AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046020 MtrunA17_Chr7g0214171 100.000 106 0 0 1 106 1 106 5.29e-77 222
Msa1046020 MtrunA17_Chr5g0427821 86.792 106 14 0 1 106 7 112 8.65e-68 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046020 AT4G24440.2 90.566 106 10 0 1 106 1 106 6.66e-71 207
Msa1046020 AT4G24440.1 90.566 106 10 0 1 106 1 106 6.66e-71 207

Find 41 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTGAGATTGCGATTC+AGG 0.222867 7_2:+6359851 Msa1046020:CDS
TTAATCTTGGCGATCGATTT+AGG 0.231845 7_2:+6359362 Msa1046020:five_prime_UTR
TTTCTCTGGGCAAACATCTA+TGG 0.280270 7_2:+6363103 Msa1046020:three_prime_UTR
TATGTTATTATAGATTTAAA+AGG 0.331823 7_2:+6362912 Msa1046020:three_prime_UTR
CTCTCTCGATTAGTTAATCT+TGG 0.355497 7_2:+6359349 Msa1046020:five_prime_UTR
ATGTGGCCTTCAGTTCTTGC+AGG 0.384806 7_2:+6362874 Msa1046020:three_prime_UTR
TAGTCATCGTTATAAATGTA+TGG 0.419101 7_2:+6363135 Msa1046020:three_prime_UTR
TCGTTATAAATGTATGGTTA+TGG 0.429200 7_2:+6363141 Msa1046020:three_prime_UTR
AATGTGCCTCACTGAGACTT+TGG 0.433161 7_2:+6359803 Msa1046020:CDS
TGAGAATATCACTTGGGAAC+TGG 0.438530 7_2:+6362976 Msa1046020:three_prime_UTR
AATAATAACATGAAGATTGA+AGG 0.444739 7_2:-6362935 None:intergenic
GTAGTCTATGACTGAAGCTC+TGG 0.460011 7_2:+6359990 Msa1046020:intron
GGTTCTCGTTCAGTTTGATA+AGG 0.472558 7_2:+6359872 Msa1046020:CDS
GAAGGCCACATCCGTCACTA+TGG 0.482621 7_2:-6362862 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.489651 7_2:-6362691 None:intergenic
CTTATCATCTGCTGGTACCA+TGG 0.489942 7_2:+6362826 Msa1046020:three_prime_UTR
TAACCCGTCCAACATTCTCT+TGG 0.494051 7_2:-6362731 None:intergenic
CACTGAGACTTTGGACGAGA+TGG 0.495885 7_2:+6359812 Msa1046020:CDS
AGAACCTGAATCGCAATCTC+AGG 0.497392 7_2:-6359855 None:intergenic
ATTTGTTTACATAGAGCTCA+TGG 0.502581 7_2:-6363075 None:intergenic
TAAAAGCAAGGTCTCTATCA+AGG 0.505886 7_2:+6360023 Msa1046020:CDS
ACAAGGAGCTTATCATCTGC+TGG 0.531966 7_2:+6362818 Msa1046020:three_prime_UTR
TGTTGGACGGGTTAAAATAG+TGG 0.534469 7_2:+6362740 Msa1046020:CDS
CTGGTTCCTGCAAGAACTGA+AGG 0.534775 7_2:-6362880 None:intergenic
CATCTGCTGGTACCATGGAT+TGG 0.547292 7_2:+6362831 Msa1046020:three_prime_UTR
CTGCTGGTACCATGGATTGG+TGG 0.547361 7_2:+6362834 Msa1046020:three_prime_UTR
CTTTATCGTAGGTCGACAAT+CGG 0.550857 7_2:+6359780 Msa1046020:CDS
GAAGACAACCAAGAGAATGT+TGG 0.561206 7_2:+6362723 Msa1046020:CDS
TAATAACATAGTGTAGATGC+TGG 0.566171 7_2:-6362899 None:intergenic
TTGGACGAGATGGTTCAGAA+TGG 0.589806 7_2:+6359822 Msa1046020:CDS
CAACCAAGAGAATGTTGGAC+GGG 0.592439 7_2:+6362728 Msa1046020:CDS
TTAGACCATAGTGACGGATG+TGG 0.610434 7_2:+6362857 Msa1046020:three_prime_UTR
ATGGTCTAACCACCAATCCA+TGG 0.610777 7_2:-6362843 None:intergenic
GGAAACACAAGTTAAAAGCA+AGG 0.611187 7_2:+6360011 Msa1046020:CDS
TTTCTATCGTATTGTCAACA+AGG 0.636647 7_2:+6362801 Msa1046020:three_prime_UTR
GTTACATTGAGAATATCACT+TGG 0.644377 7_2:+6362969 Msa1046020:three_prime_UTR
ACAACCAAGAGAATGTTGGA+CGG 0.645466 7_2:+6362727 Msa1046020:CDS
CGACGTTCGAACTTTATCGT+AGG 0.648273 7_2:+6359769 Msa1046020:CDS
TTACATTGAGAATATCACTT+GGG 0.661466 7_2:+6362970 Msa1046020:three_prime_UTR
TGGTGGTTAGACCATAGTGA+CGG 0.696323 7_2:+6362851 Msa1046020:three_prime_UTR
TCTCGTCCAAAGTCTCAGTG+AGG 0.751939 7_2:-6359809 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTGAATAAATTCTT+TGG + chr7_2:6361185-6361204 Msa1046020:intron 10.0%
!! ATTTATTGAATAAATTCTTT+GGG + chr7_2:6361186-6361205 Msa1046020:intron 10.0%
!! TATGTTATTATAGATTTAAA+AGG + chr7_2:6362912-6362931 Msa1046020:three_prime_UTR 10.0%
!!! ACAGTTTTTTTTTTTTTTTT+TGG - chr7_2:6363039-6363058 None:intergenic 10.0%
!! TTTGATGTGTAATTAAAATT+TGG - chr7_2:6360709-6360728 None:intergenic 15.0%
!! TTTATTGAATAAATTCTTTG+GGG + chr7_2:6361187-6361206 Msa1046020:intron 15.0%
!!! TACCTTTTTACTTAATTTTT+TGG + chr7_2:6361796-6361815 Msa1046020:intron 15.0%
!!! AAACATAAAAAGATGTTTTA+AGG - chr7_2:6362499-6362518 None:intergenic 15.0%
!!! TAAACAAATTTATTTTTCTC+TGG + chr7_2:6363089-6363108 Msa1046020:three_prime_UTR 15.0%
!!! AAACAAATTTATTTTTCTCT+GGG + chr7_2:6363090-6363109 Msa1046020:three_prime_UTR 15.0%
!! TTCAATTAACAAAAAGAGTA+GGG - chr7_2:6359441-6359460 None:intergenic 20.0%
!! ATTCAATTAACAAAAAGAGT+AGG - chr7_2:6359442-6359461 None:intergenic 20.0%
!!! CTTATTATTTTAATTGCATG+TGG + chr7_2:6359962-6359981 Msa1046020:intron 20.0%
!!! TTTTTACCTTTCAATTCAAT+GGG + chr7_2:6360571-6360590 Msa1046020:intron 20.0%
!!! TAAAATTTGGTTTAAGACAT+TGG - chr7_2:6360696-6360715 None:intergenic 20.0%
!! TTACATTTAGAAATTCCTTA+TGG + chr7_2:6361557-6361576 Msa1046020:intron 20.0%
!! TATTTGCATTATCTTCTATT+TGG + chr7_2:6361619-6361638 Msa1046020:intron 20.0%
!!! ATCATTCAAGGTTTAATTTT+TGG + chr7_2:6361653-6361672 Msa1046020:intron 20.0%
!! TTAAGTAAAAAGGTAATTGT+GGG - chr7_2:6361791-6361810 None:intergenic 20.0%
!! ATTAAGTAAAAAGGTAATTG+TGG - chr7_2:6361792-6361811 None:intergenic 20.0%
!! AGCCAAAAAATTAAGTAAAA+AGG - chr7_2:6361801-6361820 None:intergenic 20.0%
!! ATAATCATGAGTAAAAAGTA+TGG - chr7_2:6361890-6361909 None:intergenic 20.0%
!! TTAAAATTCTTCTACGTAAT+AGG + chr7_2:6362157-6362176 Msa1046020:intron 20.0%
!! TAAAATTCTTCTACGTAATA+GGG + chr7_2:6362158-6362177 Msa1046020:intron 20.0%
!! TAGTACAAAATGTTGTTAAA+TGG - chr7_2:6362204-6362223 None:intergenic 20.0%
!! AATAATAACATGAAGATTGA+AGG - chr7_2:6362938-6362957 None:intergenic 20.0%
!!! TCACATTTTTCAAGCTAAAA+TGG + chr7_2:6359746-6359765 Msa1046020:exon 25.0%
!! ATCTTTTGTTAGATAGTGTA+AGG + chr7_2:6360057-6360076 Msa1046020:intron 25.0%
!! TTCATCTCATTAGTTTGAAT+TGG - chr7_2:6360293-6360312 None:intergenic 25.0%
!! CTTTTTACCTTTCAATTCAA+TGG + chr7_2:6360570-6360589 Msa1046020:intron 25.0%
!! TCTCATAGTTTGGAATAAAT+CGG - chr7_2:6360605-6360624 None:intergenic 25.0%
!! CACATCAAATAACAATTTTC+CGG + chr7_2:6360720-6360739 Msa1046020:intron 25.0%
!! ACATCAAATAACAATTTTCC+GGG + chr7_2:6360721-6360740 Msa1046020:intron 25.0%
!!! TTTTCAAGAGATTCTTAAAC+CGG - chr7_2:6360825-6360844 None:intergenic 25.0%
! ATGACATGTTTCAGTATAAA+GGG - chr7_2:6360874-6360893 None:intergenic 25.0%
! TGTTGAAAAACCAAATTTGA+TGG + chr7_2:6361100-6361119 Msa1046020:intron 25.0%
! CTATAATTCACCATCAAATT+TGG - chr7_2:6361113-6361132 None:intergenic 25.0%
! TAGAATTGTCTGATAAAAAC+TGG + chr7_2:6361130-6361149 Msa1046020:intron 25.0%
! ATTCAGTTACAAATCCTATT+TGG - chr7_2:6361158-6361177 None:intergenic 25.0%
! GTTTGTACTAGGAATAAATA+TGG - chr7_2:6361382-6361401 None:intergenic 25.0%
!! AGAAAAATTGAAACTGACTT+TGG - chr7_2:6361488-6361507 None:intergenic 25.0%
! TCATAAAGAAATACTATGCA+AGG - chr7_2:6361512-6361531 None:intergenic 25.0%
! GAGATTTAAAGAGATTGAAT+TGG + chr7_2:6361754-6361773 Msa1046020:intron 25.0%
! TTAAAGAGATTGAATTGGTA+TGG + chr7_2:6361759-6361778 Msa1046020:intron 25.0%
! ATAACAGTCATATATGTCAA+TGG - chr7_2:6361918-6361937 None:intergenic 25.0%
! GAAACTAAGTAAACTATTGT+TGG + chr7_2:6362005-6362024 Msa1046020:intron 25.0%
! TACAAAATGTTGTTAAATGG+AGG - chr7_2:6362201-6362220 None:intergenic 25.0%
!! ATAGAAGATTAATTTGACTG+TGG + chr7_2:6362415-6362434 Msa1046020:intron 25.0%
!! TAGAAGATTAATTTGACTGT+GGG + chr7_2:6362416-6362435 Msa1046020:intron 25.0%
!!! AAAAGATGTTTTAAGGTGTT+GGG - chr7_2:6362492-6362511 None:intergenic 25.0%
!!! AAAAAGATGTTTTAAGGTGT+TGG - chr7_2:6362493-6362512 None:intergenic 25.0%
! TTACATTGAGAATATCACTT+GGG + chr7_2:6362970-6362989 Msa1046020:three_prime_UTR 25.0%
! TAGTCATCGTTATAAATGTA+TGG + chr7_2:6363135-6363154 Msa1046020:three_prime_UTR 25.0%
! TCGTTATAAATGTATGGTTA+TGG + chr7_2:6363141-6363160 Msa1046020:three_prime_UTR 25.0%
! TCATTTTCATAGCTTCTTAC+CGG + chr7_2:6359544-6359563 Msa1046020:intron 30.0%
AATGAATACTGTAGTAGTAG+TGG + chr7_2:6359575-6359594 Msa1046020:intron 30.0%
CATTTCATGAGAAAACAAAG+AGG - chr7_2:6359642-6359661 None:intergenic 30.0%
!!! AGTGTAAGGTGTTGATTTTT+TGG + chr7_2:6360071-6360090 Msa1046020:intron 30.0%
TATTGTTAAGATTGTCTAGC+AGG + chr7_2:6360110-6360129 Msa1046020:intron 30.0%
ATTGTTAAGATTGTCTAGCA+GGG + chr7_2:6360111-6360130 Msa1046020:intron 30.0%
CATTGAGCAACAAATATACA+AGG - chr7_2:6360183-6360202 None:intergenic 30.0%
!! TACTGAGCCTTGTATATTTT+TGG + chr7_2:6360205-6360224 Msa1046020:intron 30.0%
GATTGAGCCAAAAATATACA+AGG - chr7_2:6360215-6360234 None:intergenic 30.0%
TAATGAGATGAAGTTTACCT+AGG + chr7_2:6360301-6360320 Msa1046020:intron 30.0%
AATGAGATGAAGTTTACCTA+GGG + chr7_2:6360302-6360321 Msa1046020:intron 30.0%
!! GTATCAGTTTTTCAATCCAA+TGG + chr7_2:6360533-6360552 Msa1046020:intron 30.0%
TTTATTCCAAACTATGAGAG+AGG + chr7_2:6360606-6360625 Msa1046020:intron 30.0%
TAAAATCAAAGTCGAGGATA+TGG - chr7_2:6360666-6360685 None:intergenic 30.0%
TGGAAGAACATGAAAAAATG+AGG - chr7_2:6360754-6360773 None:intergenic 30.0%
GAAAGTTTGTGAATGAGTTT+CGG - chr7_2:6360785-6360804 None:intergenic 30.0%
GGTTTAAGAATCTCTTGAAA+AGG + chr7_2:6360824-6360843 Msa1046020:intron 30.0%
GATGACATGTTTCAGTATAA+AGG - chr7_2:6360875-6360894 None:intergenic 30.0%
! AAATCTCTAAAGGCTGAAAT+AGG - chr7_2:6360897-6360916 None:intergenic 30.0%
CCAACTTTACAAATCTCTAA+AGG - chr7_2:6360907-6360926 None:intergenic 30.0%
! CCTTTAGAGATTTGTAAAGT+TGG + chr7_2:6360904-6360923 Msa1046020:intron 30.0%
! ACACAAAGGTATATTGTAGA+GGG - chr7_2:6360933-6360952 None:intergenic 30.0%
ATACAACTGTTAACACACAA+AGG - chr7_2:6360947-6360966 None:intergenic 30.0%
! GTGTTCTTTATTTATCAGCA+TGG - chr7_2:6360985-6361004 None:intergenic 30.0%
GATAAAAACTGGTACCAAAT+AGG + chr7_2:6361141-6361160 Msa1046020:intron 30.0%
ACACAGAACTAAAATTACAC+AGG + chr7_2:6361246-6361265 Msa1046020:intron 30.0%
GTTATTGTAGAATTATTGCG+TGG - chr7_2:6361341-6361360 None:intergenic 30.0%
! GCATATTTTCTGTTTGTACT+AGG - chr7_2:6361393-6361412 None:intergenic 30.0%
TGTGCAGTTAGTATCTATTA+TGG - chr7_2:6361446-6361465 None:intergenic 30.0%
GCATAGTATTTCTTTATGAG+AGG + chr7_2:6361513-6361532 Msa1046020:intron 30.0%
CATTTAGAAATTCCTTATGG+CGG + chr7_2:6361560-6361579 Msa1046020:intron 30.0%
ATTTAGAAATTCCTTATGGC+GGG + chr7_2:6361561-6361580 Msa1046020:intron 30.0%
!!! ATTTTTTGGCTCTAAACATG+AGG + chr7_2:6361810-6361829 Msa1046020:intron 30.0%
GGAAGTCATGACAAAAAAAA+TGG - chr7_2:6361869-6361888 None:intergenic 30.0%
!!! GTTTTTTCCATCTCTTTTTG+CGG + chr7_2:6361973-6361992 Msa1046020:intron 30.0%
!!! TTTTTTCCATCTCTTTTTGC+GGG + chr7_2:6361974-6361993 Msa1046020:intron 30.0%
TAAACTATTGTTGGATAGCA+AGG + chr7_2:6362014-6362033 Msa1046020:intron 30.0%
TTGTTAAATGGAGGATATAG+TGG - chr7_2:6362192-6362211 None:intergenic 30.0%
TTGTACTAAATAACGTATCG+TGG + chr7_2:6362216-6362235 Msa1046020:intron 30.0%
ACTATACCACTATAATGTAG+CGG - chr7_2:6362265-6362284 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG - chr7_2:6362289-6362308 None:intergenic 30.0%
! ACAGATTTTGTGACAATGTT+TGG + chr7_2:6362667-6362686 Msa1046020:CDS 30.0%
TTTCTATCGTATTGTCAACA+AGG + chr7_2:6362801-6362820 Msa1046020:three_prime_UTR 30.0%
TAATAACATAGTGTAGATGC+TGG - chr7_2:6362902-6362921 None:intergenic 30.0%
GTTACATTGAGAATATCACT+TGG + chr7_2:6362969-6362988 Msa1046020:three_prime_UTR 30.0%
ATTTGTTTACATAGAGCTCA+TGG - chr7_2:6363078-6363097 None:intergenic 30.0%
! CTCTCTCGATTAGTTAATCT+TGG + chr7_2:6359349-6359368 Msa1046020:five_prime_UTR 35.0%
! TTAATCTTGGCGATCGATTT+AGG + chr7_2:6359362-6359381 Msa1046020:five_prime_UTR 35.0%
AAAATAATCGCGAAGAAGGA+AGG - chr7_2:6359401-6359420 None:intergenic 35.0%
CCAAAAAATAATCGCGAAGA+AGG - chr7_2:6359405-6359424 None:intergenic 35.0%
!!! CCTTCTTCGCGATTATTTTT+TGG + chr7_2:6359402-6359421 Msa1046020:intron 35.0%
! TGATTCTGCTACTTGAAACT+GGG + chr7_2:6359503-6359522 Msa1046020:intron 35.0%
CAGTATTCATTATATTCCGC+CGG - chr7_2:6359566-6359585 None:intergenic 35.0%
CAGTTTGATAAGGTAGGTTT+CGG + chr7_2:6359882-6359901 Msa1046020:intron 35.0%
GGAAACACAAGTTAAAAGCA+AGG + chr7_2:6360011-6360030 Msa1046020:CDS 35.0%
TAAAAGCAAGGTCTCTATCA+AGG + chr7_2:6360023-6360042 Msa1046020:CDS 35.0%
!!! AAGGTGTTGATTTTTTGGTG+AGG + chr7_2:6360076-6360095 Msa1046020:intron 35.0%
! TCTCATTAGTTTGAATTGGC+TGG - chr7_2:6360289-6360308 None:intergenic 35.0%
GTCGCATTTCAGTTTAAGTA+TGG + chr7_2:6360324-6360343 Msa1046020:intron 35.0%
TTACCTTTCAATTCAATGGG+TGG + chr7_2:6360574-6360593 Msa1046020:intron 35.0%
!! TCCTCGACTTTGATTTTACT+TGG + chr7_2:6360668-6360687 Msa1046020:intron 35.0%
TCCAAGTAAAATCAAAGTCG+AGG - chr7_2:6360672-6360691 None:intergenic 35.0%
AAAAAATGAGGAAGAGAACC+CGG - chr7_2:6360742-6360761 None:intergenic 35.0%
AAGAATCTCTTGAAAAGGTG+TGG + chr7_2:6360829-6360848 Msa1046020:intron 35.0%
! CACACAAAGGTATATTGTAG+AGG - chr7_2:6360934-6360953 None:intergenic 35.0%
TGTGTGTTAACAGTTGTATC+TGG + chr7_2:6360948-6360967 Msa1046020:intron 35.0%
ACAATTCAAGTCCACAAATC+AGG + chr7_2:6361003-6361022 Msa1046020:intron 35.0%
TCCACAAATCAGGATCAAAT+AGG + chr7_2:6361013-6361032 Msa1046020:intron 35.0%
CCACAAATCAGGATCAAATA+GGG + chr7_2:6361014-6361033 Msa1046020:intron 35.0%
AGAATTATTGCGTGGTTAAC+TGG - chr7_2:6361333-6361352 None:intergenic 35.0%
TAAAGATGCCTAACTTGAGA+GGG - chr7_2:6361590-6361609 None:intergenic 35.0%
TTAAAGATGCCTAACTTGAG+AGG - chr7_2:6361591-6361610 None:intergenic 35.0%
TAAACATGAGGTTCATTTGC+CGG + chr7_2:6361822-6361841 Msa1046020:intron 35.0%
ATGAGATCGTATAGTGCAAA+AGG - chr7_2:6361953-6361972 None:intergenic 35.0%
! ACTTTTACATGAACAAGCCA+TGG - chr7_2:6362074-6362093 None:intergenic 35.0%
AACGTATCGTGGAACAATAA+CGG + chr7_2:6362227-6362246 Msa1046020:intron 35.0%
CAAATTCCGCTACATTATAG+TGG + chr7_2:6362256-6362275 Msa1046020:intron 35.0%
GAACACTCAGAGTAAAGAAA+AGG - chr7_2:6362605-6362624 None:intergenic 35.0%
! TCTTTTCACTTTCCAATCAC+AGG + chr7_2:6362629-6362648 Msa1046020:intron 35.0%
! CTTTTCACTTTCCAATCACA+GGG + chr7_2:6362630-6362649 Msa1046020:intron 35.0%
! CAAAGCATCTTGTAAGATGA+AGG - chr7_2:6362694-6362713 None:intergenic 35.0%
! GTGATTCTGCTACTTGAAAC+TGG + chr7_2:6359502-6359521 Msa1046020:intron 40.0%
! TTTTCATAGCTTCTTACCGG+CGG + chr7_2:6359547-6359566 Msa1046020:intron 40.0%
TTAACAAGACTGACTGCACT+AGG - chr7_2:6359681-6359700 None:intergenic 40.0%
CTTTATCGTAGGTCGACAAT+CGG + chr7_2:6359780-6359799 Msa1046020:CDS 40.0%
GGTTCTCGTTCAGTTTGATA+AGG + chr7_2:6359872-6359891 Msa1046020:CDS 40.0%
CTCGTTCAGTTTGATAAGGT+AGG + chr7_2:6359876-6359895 Msa1046020:intron 40.0%
GATAAGGTAGGTTTCGGAAT+TGG + chr7_2:6359888-6359907 Msa1046020:intron 40.0%
GAGACTACATGTTTCGTTTC+TGG + chr7_2:6359917-6359936 Msa1046020:intron 40.0%
! ACATGTTTCGTTTCTGGATC+TGG + chr7_2:6359923-6359942 Msa1046020:intron 40.0%
!!! TTTTTTGGTGAGGTGAAGCA+TGG + chr7_2:6360086-6360105 Msa1046020:intron 40.0%
TTAAGATTGTCTAGCAGGGA+TGG + chr7_2:6360115-6360134 Msa1046020:intron 40.0%
TTAAACTGAAATGCGACCCT+AGG - chr7_2:6360321-6360340 None:intergenic 40.0%
CAACCACCCATTGAATTGAA+AGG - chr7_2:6360580-6360599 None:intergenic 40.0%
ACATCTCCTCTCTCATAGTT+TGG - chr7_2:6360615-6360634 None:intergenic 40.0%
AGTTTGTGAATGAGTTTCGG+AGG - chr7_2:6360782-6360801 None:intergenic 40.0%
! CCCTATTTGATCCTGATTTG+TGG - chr7_2:6361017-6361036 None:intergenic 40.0%
TTGTGAACTGTCTCTGACTT+GGG - chr7_2:6361220-6361239 None:intergenic 40.0%
ATTGTGAACTGTCTCTGACT+TGG - chr7_2:6361221-6361240 None:intergenic 40.0%
! GGATTAGTGAAACACAGTCA+CGG + chr7_2:6361267-6361286 Msa1046020:intron 40.0%
ATTGCGTGGTTAACTGGAAT+AGG - chr7_2:6361327-6361346 None:intergenic 40.0%
GAGAAGAAACGCATCATTCA+AGG + chr7_2:6361641-6361660 Msa1046020:intron 40.0%
AAACATGAGGTTCATTTGCC+GGG + chr7_2:6361823-6361842 Msa1046020:intron 40.0%
ATATGACCAAACTGCATACC+CGG - chr7_2:6361844-6361863 None:intergenic 40.0%
! TCTCATGATGATGACAACCA+TGG + chr7_2:6362054-6362073 Msa1046020:intron 40.0%
GAAGACAACCAAGAGAATGT+TGG + chr7_2:6362723-6362742 Msa1046020:CDS 40.0%
ACAACCAAGAGAATGTTGGA+CGG + chr7_2:6362727-6362746 Msa1046020:CDS 40.0%
!! TGTTGGACGGGTTAAAATAG+TGG + chr7_2:6362740-6362759 Msa1046020:CDS 40.0%
TGAGAATATCACTTGGGAAC+TGG + chr7_2:6362976-6362995 Msa1046020:three_prime_UTR 40.0%
TTTCTCTGGGCAAACATCTA+TGG + chr7_2:6363103-6363122 Msa1046020:three_prime_UTR 40.0%
CGACGTTCGAACTTTATCGT+AGG + chr7_2:6359769-6359788 Msa1046020:CDS 45.0%
AATGTGCCTCACTGAGACTT+TGG + chr7_2:6359803-6359822 Msa1046020:CDS 45.0%
TTGGACGAGATGGTTCAGAA+TGG + chr7_2:6359822-6359841 Msa1046020:CDS 45.0%
TAGTCCTGAGATTGCGATTC+AGG + chr7_2:6359851-6359870 Msa1046020:CDS 45.0%
AGAACCTGAATCGCAATCTC+AGG - chr7_2:6359858-6359877 None:intergenic 45.0%
! TAGGTTTCGGAATTGGTGCT+AGG + chr7_2:6359895-6359914 Msa1046020:intron 45.0%
GTAGTCTATGACTGAAGCTC+TGG + chr7_2:6359990-6360009 Msa1046020:intron 45.0%
AATCAGAGAGACGAAGGGTT+TGG + chr7_2:6360231-6360250 Msa1046020:intron 45.0%
!! CAGACGTAACTTGTTACGAG+TGG + chr7_2:6360412-6360431 Msa1046020:intron 45.0%
AGCAAAAGTGACACAGCCAT+TGG - chr7_2:6360552-6360571 None:intergenic 45.0%
AATGAGTTTCGGAGGATGGA+TGG - chr7_2:6360774-6360793 None:intergenic 45.0%
TGTGAATGAGTTTCGGAGGA+TGG - chr7_2:6360778-6360797 None:intergenic 45.0%
TCTGATCACGCTCATTGTTC+CGG + chr7_2:6360803-6360822 Msa1046020:intron 45.0%
! CTCTTGAAAAGGTGTGGCAT+TGG + chr7_2:6360835-6360854 Msa1046020:intron 45.0%
!! AGAAAGCTCTAGAACCCTTG+TGG - chr7_2:6361296-6361315 None:intergenic 45.0%
AGCACGCCAACAACATGAAA+CGG - chr7_2:6362445-6362464 None:intergenic 45.0%
TATGCAGATGTCCCTGTGAT+TGG - chr7_2:6362644-6362663 None:intergenic 45.0%
CAACCAAGAGAATGTTGGAC+GGG + chr7_2:6362728-6362747 Msa1046020:CDS 45.0%
TAACCCGTCCAACATTCTCT+TGG - chr7_2:6362734-6362753 None:intergenic 45.0%
ACAAGGAGCTTATCATCTGC+TGG + chr7_2:6362818-6362837 Msa1046020:three_prime_UTR 45.0%
CTTATCATCTGCTGGTACCA+TGG + chr7_2:6362826-6362845 Msa1046020:three_prime_UTR 45.0%
ATGGTCTAACCACCAATCCA+TGG - chr7_2:6362846-6362865 None:intergenic 45.0%
TGGTGGTTAGACCATAGTGA+CGG + chr7_2:6362851-6362870 Msa1046020:three_prime_UTR 45.0%
!! TTAGACCATAGTGACGGATG+TGG + chr7_2:6362857-6362876 Msa1046020:three_prime_UTR 45.0%
TCTCGTCCAAAGTCTCAGTG+AGG - chr7_2:6359812-6359831 None:intergenic 50.0%
CACTGAGACTTTGGACGAGA+TGG + chr7_2:6359812-6359831 Msa1046020:CDS 50.0%
TGGCTCAATCAGAGAGACGA+AGG + chr7_2:6360225-6360244 Msa1046020:intron 50.0%
GGCTCAATCAGAGAGACGAA+GGG + chr7_2:6360226-6360245 Msa1046020:intron 50.0%
AGAGATACGCACACTGTGTG+TGG + chr7_2:6360370-6360389 Msa1046020:intron 50.0%
TGTGTGTGGACACTTGTGTG+AGG + chr7_2:6360384-6360403 Msa1046020:intron 50.0%
ACACAGTCACGGTTTCCACA+AGG + chr7_2:6361278-6361297 Msa1046020:intron 50.0%
CACAGTCACGGTTTCCACAA+GGG + chr7_2:6361279-6361298 Msa1046020:intron 50.0%
CATTTGCCGGGTATGCAGTT+TGG + chr7_2:6361835-6361854 Msa1046020:intron 50.0%
! TCCATCTCTTTTTGCGGGAG+TGG + chr7_2:6361979-6361998 Msa1046020:intron 50.0%
! CCATCTCTTTTTGCGGGAGT+GGG + chr7_2:6361980-6361999 Msa1046020:intron 50.0%
CATCTGCTGGTACCATGGAT+TGG + chr7_2:6362831-6362850 Msa1046020:three_prime_UTR 50.0%
ATGTGGCCTTCAGTTCTTGC+AGG + chr7_2:6362874-6362893 Msa1046020:three_prime_UTR 50.0%
CTGGTTCCTGCAAGAACTGA+AGG - chr7_2:6362883-6362902 None:intergenic 50.0%
AGAGAGACGAAGGGTTTGGC+TGG + chr7_2:6360235-6360254 Msa1046020:intron 55.0%
!! TGGTAAGTGAGAGCACCCTC+AGG + chr7_2:6360255-6360274 Msa1046020:intron 55.0%
!! TGAGAGGGTATCCCGCCATA+AGG - chr7_2:6361575-6361594 None:intergenic 55.0%
GCGGGATACCCTCTCAAGTT+AGG + chr7_2:6361579-6361598 Msa1046020:intron 55.0%
CCCACTCCCGCAAAAAGAGA+TGG - chr7_2:6361983-6362002 None:intergenic 55.0%
! GGGCTGCCGTTTCATGTTGT+TGG + chr7_2:6362436-6362455 Msa1046020:intron 55.0%
TTGGCGTGCTCAGTAGCTTG+TGG + chr7_2:6362455-6362474 Msa1046020:intron 55.0%
! TGGCGTGCTCAGTAGCTTGT+GGG + chr7_2:6362456-6362475 Msa1046020:intron 55.0%
!! CTGCTGGTACCATGGATTGG+TGG + chr7_2:6362834-6362853 Msa1046020:three_prime_UTR 55.0%
GAAGGCCACATCCGTCACTA+TGG - chr7_2:6362865-6362884 None:intergenic 55.0%
TGGCTGGCAGTGTGACCTGA+GGG - chr7_2:6360273-6360292 None:intergenic 60.0%
TTGGCTGGCAGTGTGACCTG+AGG - chr7_2:6360274-6360293 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6359273 6363173 6359273 ID=Msa1046020;Name=Msa1046020
chr7_2 mRNA 6359273 6363173 6359273 ID=Msa1046020-mRNA-1;Parent=Msa1046020;Name=Msa1046020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=131|1|1|1|0.66|0.5|4|382|106
chr7_2 exon 6359273 6359383 6359273 ID=Msa1046020-mRNA-1:exon:1446;Parent=Msa1046020-mRNA-1
chr7_2 exon 6359745 6359893 6359745 ID=Msa1046020-mRNA-1:exon:1447;Parent=Msa1046020-mRNA-1
chr7_2 exon 6359994 6360044 6359994 ID=Msa1046020-mRNA-1:exon:1448;Parent=Msa1046020-mRNA-1
chr7_2 exon 6362651 6363173 6362651 ID=Msa1046020-mRNA-1:exon:1449;Parent=Msa1046020-mRNA-1
chr7_2 five_prime_UTR 6359273 6359383 6359273 ID=Msa1046020-mRNA-1:five_prime_utr;Parent=Msa1046020-mRNA-1
chr7_2 five_prime_UTR 6359745 6359764 6359745 ID=Msa1046020-mRNA-1:five_prime_utr;Parent=Msa1046020-mRNA-1
chr7_2 CDS 6359765 6359893 6359765 ID=Msa1046020-mRNA-1:cds;Parent=Msa1046020-mRNA-1
chr7_2 CDS 6359994 6360044 6359994 ID=Msa1046020-mRNA-1:cds;Parent=Msa1046020-mRNA-1
chr7_2 CDS 6362651 6362791 6362651 ID=Msa1046020-mRNA-1:cds;Parent=Msa1046020-mRNA-1
chr7_2 three_prime_UTR 6362792 6363173 6362792 ID=Msa1046020-mRNA-1:three_prime_utr;Parent=Msa1046020-mRNA-1
Gene Sequence

>Msa1046020

ATGGCGACGTTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAA

Protein sequence

>Msa1046020

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ*