AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091100 MtrunA17_Chr7g0214171 100.000 106 0 0 1 106 1 106 5.29e-77 222
Msa1091100 MtrunA17_Chr5g0427821 86.792 106 14 0 1 106 7 112 8.65e-68 199
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091100 AT4G24440.2 90.566 106 10 0 1 106 1 106 6.66e-71 207
Msa1091100 AT4G24440.1 90.566 106 10 0 1 106 1 106 6.66e-71 207

Find 41 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTGAGATTGCGATTC+AGG 0.222867 7_3:-6290692 Msa1091100:CDS
TTAATCTTGGCGATCGATTT+AGG 0.231845 7_3:-6291181 Msa1091100:intron
TTTCTCTGGGCAAACATCTA+TGG 0.280270 7_3:-6287440 Msa1091100:three_prime_UTR
TATGTTATTATAGATTTAAA+AGG 0.331823 7_3:-6287631 Msa1091100:three_prime_UTR
CTCTCTCGATTAGTTAATCT+TGG 0.355497 7_3:-6291194 Msa1091100:five_prime_UTR
ATGTGGCCTTCAGTTCTTGC+AGG 0.384806 7_3:-6287669 Msa1091100:three_prime_UTR
TAGTCATCGTTATAAATGTA+TGG 0.419101 7_3:-6287408 Msa1091100:three_prime_UTR
TCGTTATAAATGTATGGTTA+TGG 0.429200 7_3:-6287402 Msa1091100:three_prime_UTR
AATGTGCCTCACTGAGACTT+TGG 0.433161 7_3:-6290740 Msa1091100:CDS
TGAGAATATCACTTGGGAAC+TGG 0.438530 7_3:-6287567 Msa1091100:three_prime_UTR
AATAATAACATGAAGATTGA+AGG 0.444739 7_3:+6287608 None:intergenic
GTAGTCTATGACTGAAGCTC+TGG 0.460011 7_3:-6290553 Msa1091100:intron
GGTTCTCGTTCAGTTTGATA+AGG 0.472558 7_3:-6290671 Msa1091100:intron
GAAGGCCACATCCGTCACTA+TGG 0.482621 7_3:+6287681 None:intergenic
CAAAGCATCTTGTAAGATGA+AGG 0.489651 7_3:+6287852 None:intergenic
CTTATCATCTGCTGGTACCA+TGG 0.489942 7_3:-6287717 Msa1091100:three_prime_UTR
TAACCCGTCCAACATTCTCT+TGG 0.494051 7_3:+6287812 None:intergenic
CACTGAGACTTTGGACGAGA+TGG 0.495885 7_3:-6290731 Msa1091100:CDS
AGAACCTGAATCGCAATCTC+AGG 0.497392 7_3:+6290688 None:intergenic
ATTTGTTTACATAGAGCTCA+TGG 0.502581 7_3:+6287468 None:intergenic
TAAAAGCAAGGTCTCTATCA+AGG 0.505886 7_3:-6290520 Msa1091100:intron
ACAAGGAGCTTATCATCTGC+TGG 0.531966 7_3:-6287725 Msa1091100:three_prime_UTR
TGTTGGACGGGTTAAAATAG+TGG 0.534469 7_3:-6287803 Msa1091100:CDS
CTGGTTCCTGCAAGAACTGA+AGG 0.534775 7_3:+6287663 None:intergenic
CATCTGCTGGTACCATGGAT+TGG 0.547292 7_3:-6287712 Msa1091100:three_prime_UTR
CTGCTGGTACCATGGATTGG+TGG 0.547361 7_3:-6287709 Msa1091100:three_prime_UTR
CTTTATCGTAGGTCGACAAT+CGG 0.550857 7_3:-6290763 Msa1091100:CDS
GAAGACAACCAAGAGAATGT+TGG 0.561206 7_3:-6287820 Msa1091100:CDS
TAATAACATAGTGTAGATGC+TGG 0.566171 7_3:+6287644 None:intergenic
TTGGACGAGATGGTTCAGAA+TGG 0.589806 7_3:-6290721 Msa1091100:CDS
CAACCAAGAGAATGTTGGAC+GGG 0.592439 7_3:-6287815 Msa1091100:CDS
TTAGACCATAGTGACGGATG+TGG 0.610434 7_3:-6287686 Msa1091100:three_prime_UTR
ATGGTCTAACCACCAATCCA+TGG 0.610777 7_3:+6287700 None:intergenic
GGAAACACAAGTTAAAAGCA+AGG 0.611187 7_3:-6290532 Msa1091100:CDS
TTTCTATCGTATTGTCAACA+AGG 0.636647 7_3:-6287742 Msa1091100:three_prime_UTR
GTTACATTGAGAATATCACT+TGG 0.644377 7_3:-6287574 Msa1091100:three_prime_UTR
ACAACCAAGAGAATGTTGGA+CGG 0.645466 7_3:-6287816 Msa1091100:CDS
CGACGTTCGAACTTTATCGT+AGG 0.648273 7_3:-6290774 Msa1091100:CDS
TTACATTGAGAATATCACTT+GGG 0.661466 7_3:-6287573 Msa1091100:three_prime_UTR
TGGTGGTTAGACCATAGTGA+CGG 0.696323 7_3:-6287692 Msa1091100:three_prime_UTR
TCTCGTCCAAAGTCTCAGTG+AGG 0.751939 7_3:+6290734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTGAATAAATTCTT+TGG - chr7_3:6289304-6289323 Msa1091100:intron 10.0%
!! ATTTATTGAATAAATTCTTT+GGG - chr7_3:6289305-6289324 Msa1091100:intron 10.0%
!! TATGTTATTATAGATTTAAA+AGG - chr7_3:6291031-6291050 Msa1091100:intron 10.0%
!!! ACAGTTTTTTTTTTTTTTTT+TGG + chr7_3:6291158-6291177 None:intergenic 10.0%
!! TTTGATGTGTAATTAAAATT+TGG + chr7_3:6288828-6288847 None:intergenic 15.0%
!! TTTATTGAATAAATTCTTTG+GGG - chr7_3:6289306-6289325 Msa1091100:intron 15.0%
!!! TACCTTTTTACTTAATTTTT+TGG - chr7_3:6289915-6289934 Msa1091100:intron 15.0%
!!! AAACATAAAAAGATGTTTTA+AGG + chr7_3:6290618-6290637 None:intergenic 15.0%
!!! TAAACAAATTTATTTTTCTC+TGG - chr7_3:6291208-6291227 Msa1091100:five_prime_UTR 15.0%
!!! AAACAAATTTATTTTTCTCT+GGG - chr7_3:6291209-6291228 Msa1091100:five_prime_UTR 15.0%
!! TTCAATTAACAAAAAGAGTA+GGG + chr7_3:6287560-6287579 None:intergenic 20.0%
!! ATTCAATTAACAAAAAGAGT+AGG + chr7_3:6287561-6287580 None:intergenic 20.0%
!!! CTTATTATTTTAATTGCATG+TGG - chr7_3:6288081-6288100 Msa1091100:intron 20.0%
!!! TTTTTACCTTTCAATTCAAT+GGG - chr7_3:6288690-6288709 Msa1091100:intron 20.0%
!!! TAAAATTTGGTTTAAGACAT+TGG + chr7_3:6288815-6288834 None:intergenic 20.0%
!! TTACATTTAGAAATTCCTTA+TGG - chr7_3:6289676-6289695 Msa1091100:intron 20.0%
!! TATTTGCATTATCTTCTATT+TGG - chr7_3:6289738-6289757 Msa1091100:intron 20.0%
!!! ATCATTCAAGGTTTAATTTT+TGG - chr7_3:6289772-6289791 Msa1091100:intron 20.0%
!! TTAAGTAAAAAGGTAATTGT+GGG + chr7_3:6289910-6289929 None:intergenic 20.0%
!! ATTAAGTAAAAAGGTAATTG+TGG + chr7_3:6289911-6289930 None:intergenic 20.0%
!! AGCCAAAAAATTAAGTAAAA+AGG + chr7_3:6289920-6289939 None:intergenic 20.0%
!! ATAATCATGAGTAAAAAGTA+TGG + chr7_3:6290009-6290028 None:intergenic 20.0%
!! TTAAAATTCTTCTACGTAAT+AGG - chr7_3:6290276-6290295 Msa1091100:intron 20.0%
!! TAAAATTCTTCTACGTAATA+GGG - chr7_3:6290277-6290296 Msa1091100:intron 20.0%
!! TAGTACAAAATGTTGTTAAA+TGG + chr7_3:6290323-6290342 None:intergenic 20.0%
!! AATAATAACATGAAGATTGA+AGG + chr7_3:6291057-6291076 None:intergenic 20.0%
!!! TCACATTTTTCAAGCTAAAA+TGG - chr7_3:6287865-6287884 Msa1091100:CDS 25.0%
!! ATCTTTTGTTAGATAGTGTA+AGG - chr7_3:6288176-6288195 Msa1091100:intron 25.0%
!! TTCATCTCATTAGTTTGAAT+TGG + chr7_3:6288412-6288431 None:intergenic 25.0%
!! CTTTTTACCTTTCAATTCAA+TGG - chr7_3:6288689-6288708 Msa1091100:intron 25.0%
!! TCTCATAGTTTGGAATAAAT+CGG + chr7_3:6288724-6288743 None:intergenic 25.0%
!! CACATCAAATAACAATTTTC+CGG - chr7_3:6288839-6288858 Msa1091100:intron 25.0%
!! ACATCAAATAACAATTTTCC+GGG - chr7_3:6288840-6288859 Msa1091100:intron 25.0%
!!! TTTTCAAGAGATTCTTAAAC+CGG + chr7_3:6288944-6288963 None:intergenic 25.0%
! ATGACATGTTTCAGTATAAA+GGG + chr7_3:6288993-6289012 None:intergenic 25.0%
! TGTTGAAAAACCAAATTTGA+TGG - chr7_3:6289219-6289238 Msa1091100:intron 25.0%
! CTATAATTCACCATCAAATT+TGG + chr7_3:6289232-6289251 None:intergenic 25.0%
! TAGAATTGTCTGATAAAAAC+TGG - chr7_3:6289249-6289268 Msa1091100:intron 25.0%
! ATTCAGTTACAAATCCTATT+TGG + chr7_3:6289277-6289296 None:intergenic 25.0%
! GTTTGTACTAGGAATAAATA+TGG + chr7_3:6289501-6289520 None:intergenic 25.0%
!! AGAAAAATTGAAACTGACTT+TGG + chr7_3:6289607-6289626 None:intergenic 25.0%
! TCATAAAGAAATACTATGCA+AGG + chr7_3:6289631-6289650 None:intergenic 25.0%
! GAGATTTAAAGAGATTGAAT+TGG - chr7_3:6289873-6289892 Msa1091100:intron 25.0%
! TTAAAGAGATTGAATTGGTA+TGG - chr7_3:6289878-6289897 Msa1091100:intron 25.0%
! ATAACAGTCATATATGTCAA+TGG + chr7_3:6290037-6290056 None:intergenic 25.0%
! GAAACTAAGTAAACTATTGT+TGG - chr7_3:6290124-6290143 Msa1091100:intron 25.0%
! TACAAAATGTTGTTAAATGG+AGG + chr7_3:6290320-6290339 None:intergenic 25.0%
!! ATAGAAGATTAATTTGACTG+TGG - chr7_3:6290534-6290553 Msa1091100:CDS 25.0%
!! TAGAAGATTAATTTGACTGT+GGG - chr7_3:6290535-6290554 Msa1091100:CDS 25.0%
!!! AAAAGATGTTTTAAGGTGTT+GGG + chr7_3:6290611-6290630 None:intergenic 25.0%
!!! AAAAAGATGTTTTAAGGTGT+TGG + chr7_3:6290612-6290631 None:intergenic 25.0%
! TTACATTGAGAATATCACTT+GGG - chr7_3:6291089-6291108 Msa1091100:intron 25.0%
! TAGTCATCGTTATAAATGTA+TGG - chr7_3:6291254-6291273 Msa1091100:five_prime_UTR 25.0%
! TCGTTATAAATGTATGGTTA+TGG - chr7_3:6291260-6291279 Msa1091100:five_prime_UTR 25.0%
! TCATTTTCATAGCTTCTTAC+CGG - chr7_3:6287663-6287682 Msa1091100:three_prime_UTR 30.0%
AATGAATACTGTAGTAGTAG+TGG - chr7_3:6287694-6287713 Msa1091100:three_prime_UTR 30.0%
CATTTCATGAGAAAACAAAG+AGG + chr7_3:6287761-6287780 None:intergenic 30.0%
!!! AGTGTAAGGTGTTGATTTTT+TGG - chr7_3:6288190-6288209 Msa1091100:intron 30.0%
TATTGTTAAGATTGTCTAGC+AGG - chr7_3:6288229-6288248 Msa1091100:intron 30.0%
ATTGTTAAGATTGTCTAGCA+GGG - chr7_3:6288230-6288249 Msa1091100:intron 30.0%
CATTGAGCAACAAATATACA+AGG + chr7_3:6288302-6288321 None:intergenic 30.0%
!! TACTGAGCCTTGTATATTTT+TGG - chr7_3:6288324-6288343 Msa1091100:intron 30.0%
GATTGAGCCAAAAATATACA+AGG + chr7_3:6288334-6288353 None:intergenic 30.0%
TAATGAGATGAAGTTTACCT+AGG - chr7_3:6288420-6288439 Msa1091100:intron 30.0%
AATGAGATGAAGTTTACCTA+GGG - chr7_3:6288421-6288440 Msa1091100:intron 30.0%
!! GTATCAGTTTTTCAATCCAA+TGG - chr7_3:6288652-6288671 Msa1091100:intron 30.0%
TTTATTCCAAACTATGAGAG+AGG - chr7_3:6288725-6288744 Msa1091100:intron 30.0%
TAAAATCAAAGTCGAGGATA+TGG + chr7_3:6288785-6288804 None:intergenic 30.0%
TGGAAGAACATGAAAAAATG+AGG + chr7_3:6288873-6288892 None:intergenic 30.0%
GAAAGTTTGTGAATGAGTTT+CGG + chr7_3:6288904-6288923 None:intergenic 30.0%
GGTTTAAGAATCTCTTGAAA+AGG - chr7_3:6288943-6288962 Msa1091100:intron 30.0%
GATGACATGTTTCAGTATAA+AGG + chr7_3:6288994-6289013 None:intergenic 30.0%
! AAATCTCTAAAGGCTGAAAT+AGG + chr7_3:6289016-6289035 None:intergenic 30.0%
CCAACTTTACAAATCTCTAA+AGG + chr7_3:6289026-6289045 None:intergenic 30.0%
! CCTTTAGAGATTTGTAAAGT+TGG - chr7_3:6289023-6289042 Msa1091100:intron 30.0%
! ACACAAAGGTATATTGTAGA+GGG + chr7_3:6289052-6289071 None:intergenic 30.0%
ATACAACTGTTAACACACAA+AGG + chr7_3:6289066-6289085 None:intergenic 30.0%
! GTGTTCTTTATTTATCAGCA+TGG + chr7_3:6289104-6289123 None:intergenic 30.0%
GATAAAAACTGGTACCAAAT+AGG - chr7_3:6289260-6289279 Msa1091100:intron 30.0%
ACACAGAACTAAAATTACAC+AGG - chr7_3:6289365-6289384 Msa1091100:intron 30.0%
GTTATTGTAGAATTATTGCG+TGG + chr7_3:6289460-6289479 None:intergenic 30.0%
! GCATATTTTCTGTTTGTACT+AGG + chr7_3:6289512-6289531 None:intergenic 30.0%
TGTGCAGTTAGTATCTATTA+TGG + chr7_3:6289565-6289584 None:intergenic 30.0%
GCATAGTATTTCTTTATGAG+AGG - chr7_3:6289632-6289651 Msa1091100:intron 30.0%
CATTTAGAAATTCCTTATGG+CGG - chr7_3:6289679-6289698 Msa1091100:intron 30.0%
ATTTAGAAATTCCTTATGGC+GGG - chr7_3:6289680-6289699 Msa1091100:intron 30.0%
!!! ATTTTTTGGCTCTAAACATG+AGG - chr7_3:6289929-6289948 Msa1091100:intron 30.0%
GGAAGTCATGACAAAAAAAA+TGG + chr7_3:6289988-6290007 None:intergenic 30.0%
!!! GTTTTTTCCATCTCTTTTTG+CGG - chr7_3:6290092-6290111 Msa1091100:intron 30.0%
!!! TTTTTTCCATCTCTTTTTGC+GGG - chr7_3:6290093-6290112 Msa1091100:intron 30.0%
TAAACTATTGTTGGATAGCA+AGG - chr7_3:6290133-6290152 Msa1091100:intron 30.0%
TTGTTAAATGGAGGATATAG+TGG + chr7_3:6290311-6290330 None:intergenic 30.0%
TTGTACTAAATAACGTATCG+TGG - chr7_3:6290335-6290354 Msa1091100:intron 30.0%
ACTATACCACTATAATGTAG+CGG + chr7_3:6290384-6290403 None:intergenic 30.0%
TTGTTAAATAGCAGCTATAG+TGG + chr7_3:6290408-6290427 None:intergenic 30.0%
! ACAGATTTTGTGACAATGTT+TGG - chr7_3:6290786-6290805 Msa1091100:exon 30.0%
TTTCTATCGTATTGTCAACA+AGG - chr7_3:6290920-6290939 Msa1091100:intron 30.0%
TAATAACATAGTGTAGATGC+TGG + chr7_3:6291021-6291040 None:intergenic 30.0%
GTTACATTGAGAATATCACT+TGG - chr7_3:6291088-6291107 Msa1091100:intron 30.0%
ATTTGTTTACATAGAGCTCA+TGG + chr7_3:6291197-6291216 None:intergenic 30.0%
! CTCTCTCGATTAGTTAATCT+TGG - chr7_3:6287468-6287487 Msa1091100:three_prime_UTR 35.0%
! TTAATCTTGGCGATCGATTT+AGG - chr7_3:6287481-6287500 Msa1091100:three_prime_UTR 35.0%
AAAATAATCGCGAAGAAGGA+AGG + chr7_3:6287520-6287539 None:intergenic 35.0%
CCAAAAAATAATCGCGAAGA+AGG + chr7_3:6287524-6287543 None:intergenic 35.0%
!!! CCTTCTTCGCGATTATTTTT+TGG - chr7_3:6287521-6287540 Msa1091100:three_prime_UTR 35.0%
! TGATTCTGCTACTTGAAACT+GGG - chr7_3:6287622-6287641 Msa1091100:three_prime_UTR 35.0%
CAGTATTCATTATATTCCGC+CGG + chr7_3:6287685-6287704 None:intergenic 35.0%
CAGTTTGATAAGGTAGGTTT+CGG - chr7_3:6288001-6288020 Msa1091100:intron 35.0%
GGAAACACAAGTTAAAAGCA+AGG - chr7_3:6288130-6288149 Msa1091100:intron 35.0%
TAAAAGCAAGGTCTCTATCA+AGG - chr7_3:6288142-6288161 Msa1091100:intron 35.0%
!!! AAGGTGTTGATTTTTTGGTG+AGG - chr7_3:6288195-6288214 Msa1091100:intron 35.0%
! TCTCATTAGTTTGAATTGGC+TGG + chr7_3:6288408-6288427 None:intergenic 35.0%
GTCGCATTTCAGTTTAAGTA+TGG - chr7_3:6288443-6288462 Msa1091100:intron 35.0%
TTACCTTTCAATTCAATGGG+TGG - chr7_3:6288693-6288712 Msa1091100:intron 35.0%
!! TCCTCGACTTTGATTTTACT+TGG - chr7_3:6288787-6288806 Msa1091100:intron 35.0%
TCCAAGTAAAATCAAAGTCG+AGG + chr7_3:6288791-6288810 None:intergenic 35.0%
AAAAAATGAGGAAGAGAACC+CGG + chr7_3:6288861-6288880 None:intergenic 35.0%
AAGAATCTCTTGAAAAGGTG+TGG - chr7_3:6288948-6288967 Msa1091100:intron 35.0%
! CACACAAAGGTATATTGTAG+AGG + chr7_3:6289053-6289072 None:intergenic 35.0%
TGTGTGTTAACAGTTGTATC+TGG - chr7_3:6289067-6289086 Msa1091100:intron 35.0%
ACAATTCAAGTCCACAAATC+AGG - chr7_3:6289122-6289141 Msa1091100:intron 35.0%
TCCACAAATCAGGATCAAAT+AGG - chr7_3:6289132-6289151 Msa1091100:intron 35.0%
CCACAAATCAGGATCAAATA+GGG - chr7_3:6289133-6289152 Msa1091100:intron 35.0%
AGAATTATTGCGTGGTTAAC+TGG + chr7_3:6289452-6289471 None:intergenic 35.0%
TAAAGATGCCTAACTTGAGA+GGG + chr7_3:6289709-6289728 None:intergenic 35.0%
TTAAAGATGCCTAACTTGAG+AGG + chr7_3:6289710-6289729 None:intergenic 35.0%
TAAACATGAGGTTCATTTGC+CGG - chr7_3:6289941-6289960 Msa1091100:intron 35.0%
ATGAGATCGTATAGTGCAAA+AGG + chr7_3:6290072-6290091 None:intergenic 35.0%
! ACTTTTACATGAACAAGCCA+TGG + chr7_3:6290193-6290212 None:intergenic 35.0%
AACGTATCGTGGAACAATAA+CGG - chr7_3:6290346-6290365 Msa1091100:intron 35.0%
CAAATTCCGCTACATTATAG+TGG - chr7_3:6290375-6290394 Msa1091100:intron 35.0%
GAACACTCAGAGTAAAGAAA+AGG + chr7_3:6290724-6290743 None:intergenic 35.0%
! TCTTTTCACTTTCCAATCAC+AGG - chr7_3:6290748-6290767 Msa1091100:CDS 35.0%
! CTTTTCACTTTCCAATCACA+GGG - chr7_3:6290749-6290768 Msa1091100:CDS 35.0%
! CAAAGCATCTTGTAAGATGA+AGG + chr7_3:6290813-6290832 None:intergenic 35.0%
! GTGATTCTGCTACTTGAAAC+TGG - chr7_3:6287621-6287640 Msa1091100:three_prime_UTR 40.0%
! TTTTCATAGCTTCTTACCGG+CGG - chr7_3:6287666-6287685 Msa1091100:three_prime_UTR 40.0%
TTAACAAGACTGACTGCACT+AGG + chr7_3:6287800-6287819 None:intergenic 40.0%
CTTTATCGTAGGTCGACAAT+CGG - chr7_3:6287899-6287918 Msa1091100:intron 40.0%
GGTTCTCGTTCAGTTTGATA+AGG - chr7_3:6287991-6288010 Msa1091100:intron 40.0%
CTCGTTCAGTTTGATAAGGT+AGG - chr7_3:6287995-6288014 Msa1091100:intron 40.0%
GATAAGGTAGGTTTCGGAAT+TGG - chr7_3:6288007-6288026 Msa1091100:intron 40.0%
GAGACTACATGTTTCGTTTC+TGG - chr7_3:6288036-6288055 Msa1091100:intron 40.0%
! ACATGTTTCGTTTCTGGATC+TGG - chr7_3:6288042-6288061 Msa1091100:intron 40.0%
!!! TTTTTTGGTGAGGTGAAGCA+TGG - chr7_3:6288205-6288224 Msa1091100:intron 40.0%
TTAAGATTGTCTAGCAGGGA+TGG - chr7_3:6288234-6288253 Msa1091100:intron 40.0%
TTAAACTGAAATGCGACCCT+AGG + chr7_3:6288440-6288459 None:intergenic 40.0%
CAACCACCCATTGAATTGAA+AGG + chr7_3:6288699-6288718 None:intergenic 40.0%
ACATCTCCTCTCTCATAGTT+TGG + chr7_3:6288734-6288753 None:intergenic 40.0%
AGTTTGTGAATGAGTTTCGG+AGG + chr7_3:6288901-6288920 None:intergenic 40.0%
! CCCTATTTGATCCTGATTTG+TGG + chr7_3:6289136-6289155 None:intergenic 40.0%
TTGTGAACTGTCTCTGACTT+GGG + chr7_3:6289339-6289358 None:intergenic 40.0%
ATTGTGAACTGTCTCTGACT+TGG + chr7_3:6289340-6289359 None:intergenic 40.0%
! GGATTAGTGAAACACAGTCA+CGG - chr7_3:6289386-6289405 Msa1091100:intron 40.0%
ATTGCGTGGTTAACTGGAAT+AGG + chr7_3:6289446-6289465 None:intergenic 40.0%
GAGAAGAAACGCATCATTCA+AGG - chr7_3:6289760-6289779 Msa1091100:intron 40.0%
AAACATGAGGTTCATTTGCC+GGG - chr7_3:6289942-6289961 Msa1091100:intron 40.0%
ATATGACCAAACTGCATACC+CGG + chr7_3:6289963-6289982 None:intergenic 40.0%
! TCTCATGATGATGACAACCA+TGG - chr7_3:6290173-6290192 Msa1091100:intron 40.0%
GAAGACAACCAAGAGAATGT+TGG - chr7_3:6290842-6290861 Msa1091100:intron 40.0%
ACAACCAAGAGAATGTTGGA+CGG - chr7_3:6290846-6290865 Msa1091100:intron 40.0%
!! TGTTGGACGGGTTAAAATAG+TGG - chr7_3:6290859-6290878 Msa1091100:intron 40.0%
TGAGAATATCACTTGGGAAC+TGG - chr7_3:6291095-6291114 Msa1091100:intron 40.0%
TTTCTCTGGGCAAACATCTA+TGG - chr7_3:6291222-6291241 Msa1091100:five_prime_UTR 40.0%
CGACGTTCGAACTTTATCGT+AGG - chr7_3:6287888-6287907 Msa1091100:CDS 45.0%
AATGTGCCTCACTGAGACTT+TGG - chr7_3:6287922-6287941 Msa1091100:intron 45.0%
TTGGACGAGATGGTTCAGAA+TGG - chr7_3:6287941-6287960 Msa1091100:intron 45.0%
TAGTCCTGAGATTGCGATTC+AGG - chr7_3:6287970-6287989 Msa1091100:intron 45.0%
AGAACCTGAATCGCAATCTC+AGG + chr7_3:6287977-6287996 None:intergenic 45.0%
! TAGGTTTCGGAATTGGTGCT+AGG - chr7_3:6288014-6288033 Msa1091100:intron 45.0%
GTAGTCTATGACTGAAGCTC+TGG - chr7_3:6288109-6288128 Msa1091100:intron 45.0%
AATCAGAGAGACGAAGGGTT+TGG - chr7_3:6288350-6288369 Msa1091100:intron 45.0%
!! CAGACGTAACTTGTTACGAG+TGG - chr7_3:6288531-6288550 Msa1091100:intron 45.0%
AGCAAAAGTGACACAGCCAT+TGG + chr7_3:6288671-6288690 None:intergenic 45.0%
AATGAGTTTCGGAGGATGGA+TGG + chr7_3:6288893-6288912 None:intergenic 45.0%
TGTGAATGAGTTTCGGAGGA+TGG + chr7_3:6288897-6288916 None:intergenic 45.0%
TCTGATCACGCTCATTGTTC+CGG - chr7_3:6288922-6288941 Msa1091100:intron 45.0%
! CTCTTGAAAAGGTGTGGCAT+TGG - chr7_3:6288954-6288973 Msa1091100:intron 45.0%
!! AGAAAGCTCTAGAACCCTTG+TGG + chr7_3:6289415-6289434 None:intergenic 45.0%
AGCACGCCAACAACATGAAA+CGG + chr7_3:6290564-6290583 None:intergenic 45.0%
TATGCAGATGTCCCTGTGAT+TGG + chr7_3:6290763-6290782 None:intergenic 45.0%
CAACCAAGAGAATGTTGGAC+GGG - chr7_3:6290847-6290866 Msa1091100:intron 45.0%
TAACCCGTCCAACATTCTCT+TGG + chr7_3:6290853-6290872 None:intergenic 45.0%
ACAAGGAGCTTATCATCTGC+TGG - chr7_3:6290937-6290956 Msa1091100:intron 45.0%
CTTATCATCTGCTGGTACCA+TGG - chr7_3:6290945-6290964 Msa1091100:intron 45.0%
ATGGTCTAACCACCAATCCA+TGG + chr7_3:6290965-6290984 None:intergenic 45.0%
TGGTGGTTAGACCATAGTGA+CGG - chr7_3:6290970-6290989 Msa1091100:intron 45.0%
!! TTAGACCATAGTGACGGATG+TGG - chr7_3:6290976-6290995 Msa1091100:intron 45.0%
TCTCGTCCAAAGTCTCAGTG+AGG + chr7_3:6287931-6287950 None:intergenic 50.0%
CACTGAGACTTTGGACGAGA+TGG - chr7_3:6287931-6287950 Msa1091100:intron 50.0%
TGGCTCAATCAGAGAGACGA+AGG - chr7_3:6288344-6288363 Msa1091100:intron 50.0%
GGCTCAATCAGAGAGACGAA+GGG - chr7_3:6288345-6288364 Msa1091100:intron 50.0%
AGAGATACGCACACTGTGTG+TGG - chr7_3:6288489-6288508 Msa1091100:intron 50.0%
TGTGTGTGGACACTTGTGTG+AGG - chr7_3:6288503-6288522 Msa1091100:intron 50.0%
ACACAGTCACGGTTTCCACA+AGG - chr7_3:6289397-6289416 Msa1091100:intron 50.0%
CACAGTCACGGTTTCCACAA+GGG - chr7_3:6289398-6289417 Msa1091100:intron 50.0%
CATTTGCCGGGTATGCAGTT+TGG - chr7_3:6289954-6289973 Msa1091100:intron 50.0%
! TCCATCTCTTTTTGCGGGAG+TGG - chr7_3:6290098-6290117 Msa1091100:intron 50.0%
! CCATCTCTTTTTGCGGGAGT+GGG - chr7_3:6290099-6290118 Msa1091100:intron 50.0%
CATCTGCTGGTACCATGGAT+TGG - chr7_3:6290950-6290969 Msa1091100:intron 50.0%
ATGTGGCCTTCAGTTCTTGC+AGG - chr7_3:6290993-6291012 Msa1091100:intron 50.0%
CTGGTTCCTGCAAGAACTGA+AGG + chr7_3:6291002-6291021 None:intergenic 50.0%
AGAGAGACGAAGGGTTTGGC+TGG - chr7_3:6288354-6288373 Msa1091100:intron 55.0%
!! TGGTAAGTGAGAGCACCCTC+AGG - chr7_3:6288374-6288393 Msa1091100:intron 55.0%
!! TGAGAGGGTATCCCGCCATA+AGG + chr7_3:6289694-6289713 None:intergenic 55.0%
GCGGGATACCCTCTCAAGTT+AGG - chr7_3:6289698-6289717 Msa1091100:intron 55.0%
CCCACTCCCGCAAAAAGAGA+TGG + chr7_3:6290102-6290121 None:intergenic 55.0%
! GGGCTGCCGTTTCATGTTGT+TGG - chr7_3:6290555-6290574 Msa1091100:intron 55.0%
TTGGCGTGCTCAGTAGCTTG+TGG - chr7_3:6290574-6290593 Msa1091100:intron 55.0%
! TGGCGTGCTCAGTAGCTTGT+GGG - chr7_3:6290575-6290594 Msa1091100:intron 55.0%
!! CTGCTGGTACCATGGATTGG+TGG - chr7_3:6290953-6290972 Msa1091100:intron 55.0%
GAAGGCCACATCCGTCACTA+TGG + chr7_3:6290984-6291003 None:intergenic 55.0%
TGGCTGGCAGTGTGACCTGA+GGG + chr7_3:6288392-6288411 None:intergenic 60.0%
TTGGCTGGCAGTGTGACCTG+AGG + chr7_3:6288393-6288412 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6287392 6291292 6287392 ID=Msa1091100;Name=Msa1091100
chr7_3 mRNA 6287392 6291292 6287392 ID=Msa1091100-mRNA-1;Parent=Msa1091100;Name=Msa1091100-mRNA-1;_AED=0.23;_eAED=0.23;_QI=131|1|1|1|0.66|0.5|4|382|106
chr7_3 exon 6287392 6287914 6287392 ID=Msa1091100-mRNA-1:exon:1909;Parent=Msa1091100-mRNA-1
chr7_3 exon 6290521 6290571 6290521 ID=Msa1091100-mRNA-1:exon:1908;Parent=Msa1091100-mRNA-1
chr7_3 exon 6290672 6290820 6290672 ID=Msa1091100-mRNA-1:exon:1907;Parent=Msa1091100-mRNA-1
chr7_3 exon 6291182 6291292 6291182 ID=Msa1091100-mRNA-1:exon:1906;Parent=Msa1091100-mRNA-1
chr7_3 five_prime_UTR 6291182 6291292 6291182 ID=Msa1091100-mRNA-1:five_prime_utr;Parent=Msa1091100-mRNA-1
chr7_3 five_prime_UTR 6290801 6290820 6290801 ID=Msa1091100-mRNA-1:five_prime_utr;Parent=Msa1091100-mRNA-1
chr7_3 CDS 6290672 6290800 6290672 ID=Msa1091100-mRNA-1:cds;Parent=Msa1091100-mRNA-1
chr7_3 CDS 6290521 6290571 6290521 ID=Msa1091100-mRNA-1:cds;Parent=Msa1091100-mRNA-1
chr7_3 CDS 6287774 6287914 6287774 ID=Msa1091100-mRNA-1:cds;Parent=Msa1091100-mRNA-1
chr7_3 three_prime_UTR 6287392 6287773 6287392 ID=Msa1091100-mRNA-1:three_prime_utr;Parent=Msa1091100-mRNA-1
Gene Sequence

>Msa1091100

ATGGCGACGTTCGAACTTTATCGTAGGTCGACAATCGGAATGTGCCTCACTGAGACTTTGGACGAGATGGTTCAGAATGGAACTCTTAGTCCTGAGATTGCGATTCAGGTTCTCGTTCAGTTTGATAAGTCTATGACTGAAGCTCTGGAAACACAAGTTAAAAGCAAGGTCTCTATCAAGGGACATCTGCATACATACAGATTTTGTGACAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTTAAGAATGAAGACAACCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCGAAATTGCTCAGTCAGTAA

Protein sequence

>Msa1091100

MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ*