Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530870 | XP_013454691.1 | 95.570 | 158 | 4 | 1 | 1 | 158 | 1 | 155 | 7.88e-105 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530870 | sp|Q9SSB8|CX5B2_ARATH | 60.759 | 158 | 46 | 2 | 1 | 143 | 1 | 157 | 3.07e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530870 | I3ST38 | 95.570 | 158 | 4 | 1 | 1 | 158 | 1 | 155 | 3.76e-105 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005000 | Msa0530870 | 0.806212 | 9.177461e-50 | -8.615850e-47 |
| Msa0010770 | Msa0530870 | -0.805876 | 1.080120e-49 | -8.615850e-47 |
| Msa0026660 | Msa0530870 | -0.809847 | 1.545364e-50 | -8.615850e-47 |
| Msa0038870 | Msa0530870 | -0.800341 | 1.508411e-48 | -8.615850e-47 |
| Msa0092170 | Msa0530870 | -0.809486 | 1.847452e-50 | -8.615850e-47 |
| Msa0096580 | Msa0530870 | -0.800450 | 1.432860e-48 | -8.615850e-47 |
| Msa0098390 | Msa0530870 | 0.805361 | 1.385418e-49 | -8.615850e-47 |
| Msa0126910 | Msa0530870 | -0.804264 | 2.348200e-49 | -8.615850e-47 |
| Msa0377440 | Msa0530870 | -0.811700 | 6.141003e-51 | -8.615850e-47 |
| Msa0381000 | Msa0530870 | -0.822204 | 2.684819e-53 | -8.615850e-47 |
| Msa0381080 | Msa0530870 | -0.814690 | 1.355095e-51 | -8.615850e-47 |
| Msa0390960 | Msa0530870 | -0.818476 | 1.921922e-52 | -8.615850e-47 |
| Msa0419640 | Msa0530870 | 0.807152 | 5.811797e-50 | -8.615850e-47 |
| Msa0430870 | Msa0530870 | -0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa0430950 | Msa0530870 | -0.800485 | 1.409599e-48 | -8.615850e-47 |
| Msa0443430 | Msa0530870 | -0.813854 | 2.073565e-51 | -8.615850e-47 |
| Msa0446900 | Msa0530870 | -0.803617 | 3.200710e-49 | -8.615850e-47 |
| Msa0461590 | Msa0530870 | -0.801107 | 1.052271e-48 | -8.615850e-47 |
| Msa0240300 | Msa0530870 | -0.806279 | 8.887725e-50 | -8.615850e-47 |
| Msa0267870 | Msa0530870 | -0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0281480 | Msa0530870 | -0.800082 | 1.702649e-48 | -8.615850e-47 |
| Msa0310430 | Msa0530870 | -0.803523 | 3.346652e-49 | -8.615850e-47 |
| Msa0324240 | Msa0530870 | -0.808416 | 3.130036e-50 | -8.615850e-47 |
| Msa0530870 | Msa0533960 | 0.827080 | 1.905621e-54 | -8.615850e-47 |
| Msa0530870 | Msa0554380 | 0.805571 | 1.251635e-49 | -8.615850e-47 |
| Msa0530870 | Msa0555640 | -0.803817 | 2.909324e-49 | -8.615850e-47 |
| Msa0530870 | Msa0577200 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0530870 | Msa0621650 | -0.803686 | 3.096763e-49 | -8.615850e-47 |
| Msa0530870 | Msa0621840 | -0.801471 | 8.864580e-49 | -8.615850e-47 |
| Msa0530870 | Msa0624550 | 0.824315 | 8.629459e-54 | -8.615850e-47 |
| Msa0530870 | Msa0628500 | -0.805722 | 1.163466e-49 | -8.615850e-47 |
| Msa0530870 | Msa0668460 | 0.830681 | 2.560715e-55 | -8.615850e-47 |
| Msa0530870 | Msa0698210 | -0.804586 | 2.012208e-49 | -8.615850e-47 |
| Msa0530870 | Msa0736570 | -0.803073 | 4.149318e-49 | -8.615850e-47 |
| Msa0530870 | Msa0747720 | 0.802130 | 6.490462e-49 | -8.615850e-47 |
| Msa0530870 | Msa0820250 | -0.806261 | 8.965790e-50 | -8.615850e-47 |
| Msa0530870 | Msa0866400 | -0.822197 | 2.694856e-53 | -8.615850e-47 |
| Msa0530870 | Msa0866410 | -0.804153 | 2.476266e-49 | -8.615850e-47 |
| Msa0530870 | Msa0869010 | -0.800372 | 1.486430e-48 | -8.615850e-47 |
| Msa0530870 | Msa0918390 | -0.810802 | 9.614641e-51 | -8.615850e-47 |
| Msa0530870 | Msa0965020 | -0.811583 | 6.510595e-51 | -8.615850e-47 |
| Msa0530870 | Msa0981310 | -0.816231 | 6.151002e-52 | -8.615850e-47 |
| Msa0530870 | Msa0990580 | -0.800878 | 1.172275e-48 | -8.615850e-47 |
| Msa0530870 | Msa1010460 | -0.818087 | 2.354177e-52 | -8.615850e-47 |
| Msa0530870 | Msa1072700 | -0.803220 | 3.868030e-49 | -8.615850e-47 |
| Msa0530870 | Msa1089740 | 0.815498 | 8.962954e-52 | -8.615850e-47 |
| Msa0530870 | Msa1113230 | 0.812190 | 4.802966e-51 | -8.615850e-47 |
| Msa0530870 | Msa1122780 | -0.801906 | 7.217024e-49 | -8.615850e-47 |
| Msa0530870 | Msa1130530 | -0.818915 | 1.527471e-52 | -8.615850e-47 |
| Msa0530870 | Msa1131490 | -0.800156 | 1.645108e-48 | -8.615850e-47 |
| Msa0530870 | Msa1174850 | -0.820714 | 5.928370e-53 | -8.615850e-47 |
| Msa0530870 | Msa1181170 | 0.820986 | 5.132873e-53 | -8.615850e-47 |
| Msa0530870 | Msa1188600 | 0.866656 | 2.430385e-65 | -8.615850e-47 |
| Msa0530870 | Msa1242580 | 0.846586 | 1.979636e-59 | -8.615850e-47 |
| Msa0530870 | Msa1263290 | 0.805724 | 1.162757e-49 | -8.615850e-47 |
| Msa0530870 | Msa1270660 | -0.802606 | 5.179933e-49 | -8.615850e-47 |
| Msa0530870 | Msa1336040 | -0.806605 | 7.583557e-50 | -8.615850e-47 |
| Msa0530870 | Msa1338250 | -0.801104 | 1.053921e-48 | -8.615850e-47 |
| Msa0530870 | Msa1341490 | -0.829750 | 4.321471e-55 | -8.615850e-47 |
| Msa0530870 | Msa1359920 | -0.820807 | 5.642994e-53 | -8.615850e-47 |
| Msa0530870 | Msa1372290 | -0.807059 | 6.081921e-50 | -8.615850e-47 |
| Msa0530870 | Msa1416260 | -0.807613 | 4.640520e-50 | -8.615850e-47 |
| Msa0530870 | Msa1422840 | -0.802002 | 6.898282e-49 | -8.615850e-47 |
| Msa0530870 | Msa1426350 | -0.807825 | 4.184197e-50 | -8.615850e-47 |
| Msa0530870 | Msa1426570 | -0.825163 | 5.443630e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530870 | MtrunA17_Chr4g0003811 | 95.570 | 158 | 4 | 1 | 1 | 158 | 1 | 155 | 7.25e-109 | 306 |
| Msa0530870 | MtrunA17_Chr2g0332571 | 73.377 | 154 | 34 | 3 | 1 | 152 | 1 | 149 | 1.82e-75 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530870 | AT1G80230.1 | 60.759 | 158 | 46 | 2 | 1 | 143 | 1 | 157 | 3.12e-60 | 184 |
| Msa0530870 | AT3G15640.2 | 62.658 | 158 | 43 | 3 | 1 | 143 | 1 | 157 | 2.48e-54 | 169 |
| Msa0530870 | AT3G15640.1 | 62.264 | 159 | 43 | 3 | 1 | 143 | 1 | 158 | 2.09e-53 | 167 |
| Msa0530870 | AT1G52710.1 | 63.043 | 92 | 27 | 2 | 68 | 158 | 4 | 89 | 5.63e-35 | 117 |
Find 64 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGAAATTGTTTGGAAAT+TGG | 0.181137 | 4_1:-4949836 | Msa0530870:three_prime_UTR |
| TTGTTTGGAAATTGGTTAAA+AGG | 0.196575 | 4_1:-4949828 | Msa0530870:three_prime_UTR |
| TTAAATCTTACTATGATAAA+AGG | 0.245243 | 4_1:-4951200 | Msa0530870:CDS |
| AGCATGATGTTGTCTGGTTT+TGG | 0.271011 | 4_1:-4951017 | Msa0530870:CDS |
| TAAAAGTTATTGAAATTGTT+TGG | 0.297885 | 4_1:-4949843 | Msa0530870:three_prime_UTR |
| GGACCTGGTGGATCACCTTA+TGG | 0.300463 | 4_1:-4950177 | Msa0530870:CDS |
| TGTCCTTTCAGAATAAATTC+TGG | 0.319828 | 4_1:-4950115 | Msa0530870:three_prime_UTR |
| GGAGAGAAGAAGAAGAAGTT+AGG | 0.335767 | 4_1:+4955354 | None:intergenic |
| CACAAAATACTGTGCACAAA+CGG | 0.360619 | 4_1:+4950966 | None:intergenic |
| TCATGAGCGTGAGGAGATTC+AGG | 0.362790 | 4_1:-4955113 | Msa0530870:CDS |
| CAGAATAAATTCTGGAAAGA+TGG | 0.388234 | 4_1:-4950107 | Msa0530870:three_prime_UTR |
| GACCATCCTGAAGGTCCTTT+CGG | 0.407997 | 4_1:-4953465 | Msa0530870:CDS |
| AACTCACCGCCTTCACCACC+TGG | 0.414850 | 4_1:+4951165 | None:intergenic |
| GACCTGGTGGATCACCTTAT+GGG | 0.425022 | 4_1:-4950176 | Msa0530870:CDS |
| ACAAAATACTGTGCACAAAC+GGG | 0.428150 | 4_1:+4950967 | None:intergenic |
| TACTATGATAAAAGGATAGT+TGG | 0.431549 | 4_1:-4951192 | Msa0530870:CDS |
| CGCTCATGACCAGTAGCAAT+TGG | 0.434453 | 4_1:+4955127 | None:intergenic |
| GAGAGAAGAAGAAGAAGTTA+GGG | 0.434784 | 4_1:+4955355 | None:intergenic |
| GGATGCCATTAGTGATGATC+AGG | 0.437949 | 4_1:+4950144 | None:intergenic |
| TATTCTGAAAGGACAATTGA+AGG | 0.450784 | 4_1:+4950123 | None:intergenic |
| TTAGTGCCGAAAGGACCTTC+AGG | 0.451311 | 4_1:+4953459 | None:intergenic |
| TGAAGGTCCTTTCGGCACTA+AGG | 0.452856 | 4_1:-4953457 | Msa0530870:intron |
| TCAGGATCGCCGTGCCCATA+AGG | 0.466868 | 4_1:+4950162 | None:intergenic |
| GCGATCCTGATCATCACTAA+TGG | 0.467394 | 4_1:-4950149 | Msa0530870:exon |
| TAAATCATGAGGCCTATGTT+TGG | 0.468285 | 4_1:-4950048 | Msa0530870:three_prime_UTR |
| GGTTAAAAGGAAAAGTGAAA+TGG | 0.482131 | 4_1:-4949815 | Msa0530870:three_prime_UTR |
| TTTCCAGAATTTATTCTGAA+AGG | 0.494631 | 4_1:+4950112 | None:intergenic |
| AGGATGAGCATGATGTTGTC+TGG | 0.496376 | 4_1:-4951023 | Msa0530870:CDS |
| GCAGGTGACGACAGTACTAC+TGG | 0.504424 | 4_1:-4955178 | Msa0530870:intron |
| AGTAATGAAACAGCGACGGC+GGG | 0.509168 | 4_1:+4955320 | None:intergenic |
| TAGTAAGATTTAACAACAGC+AGG | 0.525274 | 4_1:+4951210 | None:intergenic |
| AAAAGGATAGTTGGATGCCC+AGG | 0.535634 | 4_1:-4951183 | Msa0530870:CDS |
| ACATAATTTGACAGAATCCA+TGG | 0.538988 | 4_1:+4949940 | None:intergenic |
| TTTGACAGAATCCATGGCTC+AGG | 0.539506 | 4_1:+4949946 | None:intergenic |
| GTTGGATGCCCAGGTGGTGA+AGG | 0.545498 | 4_1:-4951174 | Msa0530870:CDS |
| GATGTAATGCCAATTGCTAC+TGG | 0.553661 | 4_1:-4955136 | Msa0530870:CDS |
| GGAAAAGTGAAATGGCAAGA+AGG | 0.555994 | 4_1:-4949807 | Msa0530870:three_prime_UTR |
| ATAGGCCTCATGATTTAGAA+AGG | 0.561194 | 4_1:+4950054 | None:intergenic |
| ATGCTCAATTGCCTGAGCCA+TGG | 0.572434 | 4_1:-4949957 | Msa0530870:three_prime_UTR |
| TGCCCATAAGGTGATCCACC+AGG | 0.585360 | 4_1:+4950174 | None:intergenic |
| CAGCTCGAAGTGGTAGGACC+TGG | 0.586031 | 4_1:-4950192 | Msa0530870:CDS |
| GTAACATCAAAACCAAACAT+AGG | 0.587343 | 4_1:+4950036 | None:intergenic |
| TAATGAAACAGCGACGGCGG+GGG | 0.589892 | 4_1:+4955322 | None:intergenic |
| CTCGAAGTGGTAGGACCTGG+TGG | 0.596102 | 4_1:-4950189 | Msa0530870:CDS |
| CTTGAAATTGACCATCCTGA+AGG | 0.603198 | 4_1:-4953474 | Msa0530870:CDS |
| GGTGGATCACCTTATGGGCA+CGG | 0.603424 | 4_1:-4950171 | Msa0530870:CDS |
| AACTGGATTGAGTAGAGAAG+TGG | 0.605523 | 4_1:+4955288 | None:intergenic |
| GGAGATTCAGGCTCAACTTG+AGG | 0.610521 | 4_1:-4955101 | Msa0530870:intron |
| TGCTACTGGTCATGAGCGTG+AGG | 0.621350 | 4_1:-4955122 | Msa0530870:CDS |
| TCATGATTTAGAAAGGCCGT+AGG | 0.622656 | 4_1:+4950061 | None:intergenic |
| GAGTAATGAAACAGCGACGG+CGG | 0.623940 | 4_1:+4955319 | None:intergenic |
| TGGATTGAGTAGAGAAGTGG+TGG | 0.624347 | 4_1:+4955291 | None:intergenic |
| ACTCACCGCCTTCACCACCT+GGG | 0.633268 | 4_1:+4951166 | None:intergenic |
| TGCCGAAAGGACCTTCAGGA+TGG | 0.633681 | 4_1:+4953463 | None:intergenic |
| GTGGAACAGCTCGAAGTGGT+AGG | 0.637413 | 4_1:-4950198 | Msa0530870:intron |
| CATGATTTAGAAAGGCCGTA+GGG | 0.642179 | 4_1:+4950062 | None:intergenic |
| GTAATGAAACAGCGACGGCG+GGG | 0.642880 | 4_1:+4955321 | None:intergenic |
| TACGGCCTTTCTAAATCATG+AGG | 0.650319 | 4_1:-4950059 | Msa0530870:three_prime_UTR |
| ACACTAACCTTAGTGCCGAA+AGG | 0.651717 | 4_1:+4953450 | None:intergenic |
| GGATGCCCAGGTGGTGAAGG+CGG | 0.652349 | 4_1:-4951171 | Msa0530870:intron |
| GCACAAACGGGACATTCATG+AGG | 0.657296 | 4_1:+4950979 | None:intergenic |
| AGGATAGTTGGATGCCCAGG+TGG | 0.659956 | 4_1:-4951180 | Msa0530870:CDS |
| AGAGAGTAATGAAACAGCGA+CGG | 0.677097 | 4_1:+4955316 | None:intergenic |
| ATTTGTGGAACAGCTCGAAG+TGG | 0.677398 | 4_1:-4950202 | Msa0530870:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTAATTGAAAAAAATAA+AGG | - | chr4_1:4950470-4950489 | Msa0530870:intron | 10.0% |
| !! | TAATAAAATTACATTCATTT+GGG | + | chr4_1:4953249-4953268 | None:intergenic | 10.0% |
| !! | AAATATAAAAAATAAGCATT+AGG | - | chr4_1:4953805-4953824 | Msa0530870:intron | 10.0% |
| !!! | TAATTTCTATTTTTATAAGA+AGG | - | chr4_1:4954763-4954782 | Msa0530870:intron | 10.0% |
| !! | GAATAAATGAAAACAATTAT+CGG | + | chr4_1:4950293-4950312 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATTAAGATTGAT+GGG | + | chr4_1:4950466-4950485 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAATTAAGATTGA+TGG | + | chr4_1:4950467-4950486 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTTGTAATAGG+AGG | - | chr4_1:4950789-4950808 | Msa0530870:intron | 15.0% |
| !!! | TTAAACTAACATTTAACTTA+AGG | + | chr4_1:4951002-4951021 | None:intergenic | 15.0% |
| !!! | ACATGTATTTAATGTTTTAT+TGG | - | chr4_1:4951629-4951648 | Msa0530870:intron | 15.0% |
| !!! | CATGTATTTAATGTTTTATT+GGG | - | chr4_1:4951630-4951649 | Msa0530870:intron | 15.0% |
| !!! | ATGTATTTAATGTTTTATTG+GGG | - | chr4_1:4951631-4951650 | Msa0530870:intron | 15.0% |
| !! | CAAAAATTTAAACCAATAAT+AGG | + | chr4_1:4952290-4952309 | None:intergenic | 15.0% |
| !! | TTAAAGTGAAAATTACATAT+TGG | - | chr4_1:4952709-4952728 | Msa0530870:intron | 15.0% |
| !! | ACATATTGCAATAAAAATAA+TGG | + | chr4_1:4952840-4952859 | None:intergenic | 15.0% |
| !!! | TTCTATATTTTTCACTTATT+TGG | - | chr4_1:4952918-4952937 | Msa0530870:intron | 15.0% |
| !! | CTAATAAAATTACATTCATT+TGG | + | chr4_1:4953250-4953269 | None:intergenic | 15.0% |
| !! | TTAAATCTTACTATGATAAA+AGG | - | chr4_1:4954150-4954169 | Msa0530870:intron | 15.0% |
| !!! | TAAGTTTGTACTTTTAAAAA+TGG | - | chr4_1:4955464-4955483 | Msa0530870:five_prime_UTR | 15.0% |
| !! | TAAAAGTTATTGAAATTGTT+TGG | - | chr4_1:4955507-4955526 | Msa0530870:intron | 15.0% |
| !!! | AATGCTTCTTTGATTTTTTT+CGG | + | chr4_1:4949817-4949836 | None:intergenic | 20.0% |
| !! | ATTTATTATTAGTGTCTGTT+TGG | - | chr4_1:4950332-4950351 | Msa0530870:intron | 20.0% |
| !!! | TTTTTCAATTAAGATTGATG+GGG | + | chr4_1:4950465-4950484 | None:intergenic | 20.0% |
| !!! | AATGTGTTTTTTTTAATAGG+GGG | + | chr4_1:4950532-4950551 | None:intergenic | 20.0% |
| !!! | GAATGTGTTTTTTTTAATAG+GGG | + | chr4_1:4950533-4950552 | None:intergenic | 20.0% |
| !!! | GGAATGTGTTTTTTTTAATA+GGG | + | chr4_1:4950534-4950553 | None:intergenic | 20.0% |
| !!! | TGGAATGTGTTTTTTTTAAT+AGG | + | chr4_1:4950535-4950554 | None:intergenic | 20.0% |
| !! | ATCAAAATTGAAACAAAAGA+GGG | + | chr4_1:4950571-4950590 | None:intergenic | 20.0% |
| !! | ACTTACAAGTTAACTTATAT+CGG | + | chr4_1:4950927-4950946 | None:intergenic | 20.0% |
| !!! | GTTAGTTTAAGTTTGAATAT+AGG | - | chr4_1:4951012-4951031 | Msa0530870:CDS | 20.0% |
| !! | AACTAAGTTGTTTATACAAA+TGG | - | chr4_1:4951268-4951287 | Msa0530870:intron | 20.0% |
| !! | ACTAAGTTGTTTATACAAAT+GGG | - | chr4_1:4951269-4951288 | Msa0530870:intron | 20.0% |
| !!! | TACAAATCATAGAATTCTTT+TGG | - | chr4_1:4951362-4951381 | Msa0530870:intron | 20.0% |
| !! | TCGAAATTCTTTATTAGAAT+TGG | + | chr4_1:4951558-4951577 | None:intergenic | 20.0% |
| !!! | ACTAGTAATAATTTGTGAAA+TGG | - | chr4_1:4952024-4952043 | Msa0530870:intron | 20.0% |
| !! | CAAAAAAAGAAAGATAAAAG+AGG | + | chr4_1:4952380-4952399 | None:intergenic | 20.0% |
| !! | GAGATGCAATAAAATAAAAA+AGG | + | chr4_1:4952474-4952493 | None:intergenic | 20.0% |
| !!! | CTTTTTCATATTTGAAAGTA+AGG | - | chr4_1:4952530-4952549 | Msa0530870:intron | 20.0% |
| !! | AATATAGAAACCAATAATGA+TGG | + | chr4_1:4952907-4952926 | None:intergenic | 20.0% |
| !!! | TGGTAGTTTTTTCAATTATT+TGG | - | chr4_1:4953043-4953062 | Msa0530870:intron | 20.0% |
| !! | ATATCTTAATAAGTGAAAAG+TGG | + | chr4_1:4953206-4953225 | None:intergenic | 20.0% |
| !!! | CTTTTCACTTATTAAGATAT+TGG | - | chr4_1:4953206-4953225 | Msa0530870:intron | 20.0% |
| !! | TGACAAACAATTAAAAACTA+CGG | + | chr4_1:4953273-4953292 | None:intergenic | 20.0% |
| !!! | GTTTTTGAAATTTCAGTTAA+GGG | + | chr4_1:4953327-4953346 | None:intergenic | 20.0% |
| !!! | AGTTTTTGAAATTTCAGTTA+AGG | + | chr4_1:4953328-4953347 | None:intergenic | 20.0% |
| !! | AACTCTTTAACATGTTTATA+AGG | - | chr4_1:4953344-4953363 | Msa0530870:intron | 20.0% |
| !!! | TGTGCATAAATTTTGAATTT+AGG | - | chr4_1:4953633-4953652 | Msa0530870:intron | 20.0% |
| !!! | GTGCATAAATTTTGAATTTA+GGG | - | chr4_1:4953634-4953653 | Msa0530870:intron | 20.0% |
| !!! | AGTAAGGTAATTTTCAATTA+CGG | + | chr4_1:4954542-4954561 | None:intergenic | 20.0% |
| !!! | TACGAAATATTTAAAGCTAA+AGG | + | chr4_1:4954657-4954676 | None:intergenic | 20.0% |
| !! | ATAATCATACTTAATAGTCA+AGG | + | chr4_1:4954689-4954708 | None:intergenic | 20.0% |
| !! | GATAACTTAAACCAATATAT+AGG | + | chr4_1:4954868-4954887 | None:intergenic | 20.0% |
| !!! | TGAAATTCTGATTTACTTTT+TGG | - | chr4_1:4955068-4955087 | Msa0530870:intron | 20.0% |
| !!! | TTTACTTTTTGGATCATTTT+TGG | - | chr4_1:4955079-4955098 | Msa0530870:intron | 20.0% |
| !! | TATTGAAATTGTTTGGAAAT+TGG | - | chr4_1:4955514-4955533 | Msa0530870:intron | 20.0% |
| ! | AAATTGAGAGAAAAACGAAA+AGG | - | chr4_1:4949898-4949917 | Msa0530870:three_prime_UTR | 25.0% |
| ! | AATTGAGAGAAAAACGAAAA+GGG | - | chr4_1:4949899-4949918 | Msa0530870:three_prime_UTR | 25.0% |
| !!! | ATGTGTTTTTATATGATCTC+AGG | + | chr4_1:4949930-4949949 | None:intergenic | 25.0% |
| ! | AATAATCAAAATCACGAAAC+AGG | + | chr4_1:4950140-4950159 | None:intergenic | 25.0% |
| !! | ATTATTTTCTTTCTTGTTGC+AGG | - | chr4_1:4950154-4950173 | Msa0530870:CDS | 25.0% |
| ! | TAGACTTAATATTGAGCTTA+TGG | - | chr4_1:4950356-4950375 | Msa0530870:intron | 25.0% |
| !! | TTATTTTCATGAGCTTATAG+TGG | - | chr4_1:4950387-4950406 | Msa0530870:intron | 25.0% |
| !! | TTAAACACCTAATTTTGCAT+TGG | - | chr4_1:4950494-4950513 | Msa0530870:intron | 25.0% |
| ! | GATCAAAATTGAAACAAAAG+AGG | + | chr4_1:4950572-4950591 | None:intergenic | 25.0% |
| ! | TCAAAATTGAAAGTTGCAAA+AGG | - | chr4_1:4950732-4950751 | Msa0530870:intron | 25.0% |
| ! | CAAAATTGAAAGTTGCAAAA+GGG | - | chr4_1:4950733-4950752 | Msa0530870:intron | 25.0% |
| ! | AAAATTGAAAGTTGCAAAAG+GGG | - | chr4_1:4950734-4950753 | Msa0530870:intron | 25.0% |
| ! | CTATGTTTGGTAAAAAATAG+TGG | + | chr4_1:4950979-4950998 | None:intergenic | 25.0% |
| !! | ATTTAACTTAAGGCTATGTT+TGG | + | chr4_1:4950992-4951011 | None:intergenic | 25.0% |
| ! | CTCAATAGATAAGTTCAAAT+AGG | + | chr4_1:4951052-4951071 | None:intergenic | 25.0% |
| !! | CTAACTTTTGTCATAAACAT+AGG | + | chr4_1:4951296-4951315 | None:intergenic | 25.0% |
| !!! | ATCATAGAATTCTTTTGGTT+TGG | - | chr4_1:4951367-4951386 | Msa0530870:intron | 25.0% |
| ! | TAGGATTTATTCTAACTTGA+AGG | + | chr4_1:4951526-4951545 | None:intergenic | 25.0% |
| ! | CAAGTTAGAATAAATCCTAA+AGG | - | chr4_1:4951527-4951546 | Msa0530870:intron | 25.0% |
| !!! | TGAGAATTTTGTTGTATAGT+TGG | - | chr4_1:4951779-4951798 | Msa0530870:intron | 25.0% |
| ! | TTGAATGTAATTACATGTGT+TGG | - | chr4_1:4952053-4952072 | Msa0530870:intron | 25.0% |
| ! | TTCAGTTCAATATGAAATGT+TGG | - | chr4_1:4952106-4952125 | Msa0530870:intron | 25.0% |
| ! | AGAATATTAACTATTGCACA+AGG | + | chr4_1:4952512-4952531 | None:intergenic | 25.0% |
| ! | AAGTGAAAATTACATATTGG+AGG | - | chr4_1:4952712-4952731 | Msa0530870:intron | 25.0% |
| ! | AGCTATTGATATTAACCATA+TGG | - | chr4_1:4952749-4952768 | Msa0530870:intron | 25.0% |
| ! | TTACAGAAACCAATTCTTAT+CGG | + | chr4_1:4953122-4953141 | None:intergenic | 25.0% |
| !!! | AATTACATTCATTTGGGTTT+TGG | + | chr4_1:4953243-4953262 | None:intergenic | 25.0% |
| ! | AAAAGTAGCTAACTGAATTT+AGG | + | chr4_1:4953489-4953508 | None:intergenic | 25.0% |
| ! | CATTAGTTATTCCAATTTGT+TGG | + | chr4_1:4953584-4953603 | None:intergenic | 25.0% |
| ! | CAACAAATTGGAATAACTAA+TGG | - | chr4_1:4953582-4953601 | Msa0530870:intron | 25.0% |
| ! | AATTGGAATAACTAATGGAA+AGG | - | chr4_1:4953587-4953606 | Msa0530870:intron | 25.0% |
| !! | TGACAACTTTTATATGGTAA+TGG | - | chr4_1:4953728-4953747 | Msa0530870:intron | 25.0% |
| ! | GCTGTATTATTAGTAGATAA+TGG | - | chr4_1:4954061-4954080 | Msa0530870:intron | 25.0% |
| ! | AAACAAACAATTAAAGTAGC+TGG | + | chr4_1:4954104-4954123 | None:intergenic | 25.0% |
| !!! | GCTACTTTAATTGTTTGTTT+TGG | - | chr4_1:4954104-4954123 | Msa0530870:intron | 25.0% |
| !!! | AATTGTTTGTTTTGGTTCAT+AGG | - | chr4_1:4954112-4954131 | Msa0530870:intron | 25.0% |
| ! | TACTATGATAAAAGGATAGT+TGG | - | chr4_1:4954158-4954177 | Msa0530870:intron | 25.0% |
| ! | TGATGAAAAATGCTAGAATT+TGG | - | chr4_1:4954264-4954283 | Msa0530870:intron | 25.0% |
| ! | AATACTGCAATAACAGTAAA+AGG | + | chr4_1:4954435-4954454 | None:intergenic | 25.0% |
| !!! | ACTGTTATTGCAGTATTTTT+TGG | - | chr4_1:4954438-4954457 | Msa0530870:intron | 25.0% |
| !! | TAAGGTAATTTTCAATTACG+GGG | + | chr4_1:4954540-4954559 | None:intergenic | 25.0% |
| !! | GTAAGGTAATTTTCAATTAC+GGG | + | chr4_1:4954541-4954560 | None:intergenic | 25.0% |
| !! | GTTATTGATTGCACATAATA+AGG | - | chr4_1:4954606-4954625 | Msa0530870:intron | 25.0% |
| !! | ATCAAAATTTTATTAGCTGC+AGG | - | chr4_1:4954952-4954971 | Msa0530870:intron | 25.0% |
| ! | TCTAAATAGTAAGAATGCAT+AGG | - | chr4_1:4954978-4954997 | Msa0530870:intron | 25.0% |
| !! | AATGCATAGGTTTGTTTAAA+CGG | - | chr4_1:4954991-4955010 | Msa0530870:intron | 25.0% |
| ! | ACTAACAATCTGTTTATTTG+TGG | - | chr4_1:4955133-4955152 | Msa0530870:CDS | 25.0% |
| ! | TTTCCAGAATTTATTCTGAA+AGG | + | chr4_1:4955241-4955260 | None:intergenic | 25.0% |
| !!! | CTCTGTGATTATTTTTAAGT+AGG | - | chr4_1:4955370-4955389 | Msa0530870:CDS | 25.0% |
| !!! | TTATTTTTCATTAAACTCCC+AGG | + | chr4_1:4955490-4955509 | None:intergenic | 25.0% |
| ! | TTGTTTGGAAATTGGTTAAA+AGG | - | chr4_1:4955522-4955541 | Msa0530870:intron | 25.0% |
| TACTACTGGAATCAAAAAGA+AGG | - | chr4_1:4950186-4950205 | Msa0530870:CDS | 30.0% | |
| TTAAGATTGATGGGGTAAAA+TGG | + | chr4_1:4950457-4950476 | None:intergenic | 30.0% | |
| AAACAAAAGAGGGAAATTCA+GGG | + | chr4_1:4950561-4950580 | None:intergenic | 30.0% | |
| TTGAGCAAGTTTCAGATTTA+TGG | - | chr4_1:4950639-4950658 | Msa0530870:intron | 30.0% | |
| TGAGCAAGTTTCAGATTTAT+GGG | - | chr4_1:4950640-4950659 | Msa0530870:intron | 30.0% | |
| ! | TTTTCACTTAAACGCACTTT+TGG | + | chr4_1:4950847-4950866 | None:intergenic | 30.0% |
| CAATGTGACTTATAGGAATT+AGG | - | chr4_1:4951426-4951445 | Msa0530870:intron | 30.0% | |
| TCATTCGTAATTGCAAACAA+TGG | - | chr4_1:4951495-4951514 | Msa0530870:intron | 30.0% | |
| !!! | TTAGAATTGGTTTTGCCTTT+AGG | + | chr4_1:4951545-4951564 | None:intergenic | 30.0% |
| ! | GAGTGTCATTCTTTGTATAT+AGG | - | chr4_1:4951755-4951774 | Msa0530870:intron | 30.0% |
| !!! | ACATGTGTGTTGTTTTTGTT+AGG | - | chr4_1:4951842-4951861 | Msa0530870:intron | 30.0% |
| !!! | CATGTGTGTTGTTTTTGTTA+GGG | - | chr4_1:4951843-4951862 | Msa0530870:intron | 30.0% |
| TAAACCAATAATAGGACTGT+TGG | + | chr4_1:4952282-4952301 | None:intergenic | 30.0% | |
| CAATTGACTAAAATTCACGA+CGG | + | chr4_1:4952335-4952354 | None:intergenic | 30.0% | |
| AAAGAAAGATAAAAGAGGAG+TGG | + | chr4_1:4952375-4952394 | None:intergenic | 30.0% | |
| CAGTTTCACATTAAAATGCT+TGG | + | chr4_1:4952651-4952670 | None:intergenic | 30.0% | |
| !! | CAAGCATTTTAATGTGAAAC+TGG | - | chr4_1:4952649-4952668 | Msa0530870:intron | 30.0% |
| !!! | TCAATAGCTTTTGAAGCTAA+TGG | + | chr4_1:4952738-4952757 | None:intergenic | 30.0% |
| TTATCATCTAGTGAACCATA+TGG | + | chr4_1:4952767-4952786 | None:intergenic | 30.0% | |
| CTAAAATCTAATGAAAACCG+AGG | + | chr4_1:4952791-4952810 | None:intergenic | 30.0% | |
| ! | ATAATGGAGACTGATTTACT+GGG | + | chr4_1:4952824-4952843 | None:intergenic | 30.0% |
| ! | AATAATGGAGACTGATTTAC+TGG | + | chr4_1:4952825-4952844 | None:intergenic | 30.0% |
| TTAGTTCCTACCATCATTAT+TGG | - | chr4_1:4952894-4952913 | Msa0530870:intron | 30.0% | |
| TAGAAACCAATAATGATGGT+AGG | + | chr4_1:4952903-4952922 | None:intergenic | 30.0% | |
| TAGTTCCTGTAGTTTCTATT+TGG | - | chr4_1:4952948-4952967 | Msa0530870:intron | 30.0% | |
| ! | GTTTCTATTTGGTAAGGTTT+TGG | - | chr4_1:4952959-4952978 | Msa0530870:intron | 30.0% |
| CTCGATATGTGAAAATTACA+GGG | + | chr4_1:4953012-4953031 | None:intergenic | 30.0% | |
| CTTGATGAACAGAAATGATA+GGG | + | chr4_1:4953078-4953097 | None:intergenic | 30.0% | |
| CTGTTCATCAAGGTAATATT+TGG | - | chr4_1:4953086-4953105 | Msa0530870:intron | 30.0% | |
| CCAATTCTTATCGGAAAATA+GGG | + | chr4_1:4953113-4953132 | None:intergenic | 30.0% | |
| ACCAATTCTTATCGGAAAAT+AGG | + | chr4_1:4953114-4953133 | None:intergenic | 30.0% | |
| ! | TCTGTAATTTTCACAAGTTG+AGG | - | chr4_1:4953135-4953154 | Msa0530870:intron | 30.0% |
| TAGTGTACTAAATAGAAGCT+AGG | - | chr4_1:4953406-4953425 | Msa0530870:intron | 30.0% | |
| !! | ATATATCCATTGTTGCTTTC+AGG | + | chr4_1:4953435-4953454 | None:intergenic | 30.0% |
| CTGAATTTAGGAAGAATCAT+TGG | + | chr4_1:4953477-4953496 | None:intergenic | 30.0% | |
| ! | AACTTTTGTAGTGACTTAAC+AGG | + | chr4_1:4953524-4953543 | None:intergenic | 30.0% |
| !! | TTCCAATTTGTTGGATACTT+AGG | + | chr4_1:4953575-4953594 | None:intergenic | 30.0% |
| TTACAGGGATAACTTTATGT+TGG | + | chr4_1:4953694-4953713 | None:intergenic | 30.0% | |
| ! | AAGCTCTTTTACATCTTACA+GGG | + | chr4_1:4953709-4953728 | None:intergenic | 30.0% |
| ! | AGAGCTTGACAACTTTTATA+TGG | - | chr4_1:4953722-4953741 | Msa0530870:intron | 30.0% |
| !!! | CAACTTTTATATGGTAATGG+TGG | - | chr4_1:4953731-4953750 | Msa0530870:intron | 30.0% |
| ATGATATGACATAAAGCCAT+TGG | + | chr4_1:4953873-4953892 | None:intergenic | 30.0% | |
| !! | ATGGCTTTATGTCATATCAT+TGG | - | chr4_1:4953873-4953892 | Msa0530870:intron | 30.0% |
| GGGCAAATGAAAAACAAAAA+TGG | + | chr4_1:4953968-4953987 | None:intergenic | 30.0% | |
| ! | GATAAGCATATAGCTCTTTT+GGG | + | chr4_1:4953988-4954007 | None:intergenic | 30.0% |
| ! | AGATAAGCATATAGCTCTTT+TGG | + | chr4_1:4953989-4954008 | None:intergenic | 30.0% |
| TAGTAAGATTTAACAACAGC+AGG | + | chr4_1:4954143-4954162 | None:intergenic | 30.0% | |
| AAGAGAAACAAAGAATACTC+TGG | + | chr4_1:4954211-4954230 | None:intergenic | 30.0% | |
| !!! | ACAAATTGTTTTGATTGCAG+AGG | - | chr4_1:4954307-4954326 | Msa0530870:intron | 30.0% |
| ! | AAGGTAATTTTCAATTACGG+GGG | + | chr4_1:4954539-4954558 | None:intergenic | 30.0% |
| AGGAACTAAAAACATCTTGT+AGG | + | chr4_1:4954637-4954656 | None:intergenic | 30.0% | |
| GATTATATCATGTTGTTGCA+TGG | - | chr4_1:4954703-4954722 | Msa0530870:intron | 30.0% | |
| ! | AATGTTCTAAGCAGATTGAA+AGG | + | chr4_1:4954820-4954839 | None:intergenic | 30.0% |
| ! | TCCATTTAGAGCCTATATAT+TGG | - | chr4_1:4954854-4954873 | Msa0530870:intron | 30.0% |
| !! | ACCAATATATAGGCTCTAAA+TGG | + | chr4_1:4954858-4954877 | None:intergenic | 30.0% |
| CTTTCATGAGGTTGAAATAA+AGG | + | chr4_1:4954896-4954915 | None:intergenic | 30.0% | |
| ! | ACTTTTCATTTGCTTTCATG+AGG | + | chr4_1:4954908-4954927 | None:intergenic | 30.0% |
| AATGAAAAGTCAAACAGCAA+AGG | - | chr4_1:4954918-4954937 | Msa0530870:intron | 30.0% | |
| ! | TATTCTGAAAGGACAATTGA+AGG | + | chr4_1:4955230-4955249 | None:intergenic | 30.0% |
| TGTCCTTTCAGAATAAATTC+TGG | - | chr4_1:4955235-4955254 | Msa0530870:intron | 30.0% | |
| ! | CAGAATAAATTCTGGAAAGA+TGG | - | chr4_1:4955243-4955262 | Msa0530870:intron | 30.0% |
| GTAACATCAAAACCAAACAT+AGG | + | chr4_1:4955317-4955336 | None:intergenic | 30.0% | |
| ACATAATTTGACAGAATCCA+TGG | + | chr4_1:4955413-4955432 | None:intergenic | 30.0% | |
| !! | TTGTACTTTTAAAAATGGCC+TGG | - | chr4_1:4955469-4955488 | Msa0530870:five_prime_UTR | 30.0% |
| !! | TGTACTTTTAAAAATGGCCT+GGG | - | chr4_1:4955470-4955489 | Msa0530870:five_prime_UTR | 30.0% |
| GGTTAAAAGGAAAAGTGAAA+TGG | - | chr4_1:4955535-4955554 | Msa0530870:five_prime_UTR | 30.0% | |
| !!! | TCTTTGATTTTTTTCGGTGG+TGG | + | chr4_1:4949811-4949830 | None:intergenic | 35.0% |
| !!! | GCTTCTTTGATTTTTTTCGG+TGG | + | chr4_1:4949814-4949833 | None:intergenic | 35.0% |
| GAGAGAAGAAGAAGAAGTTA+GGG | + | chr4_1:4949998-4950017 | None:intergenic | 35.0% | |
| GAGAAAGAGAGAGTAATAAC+TGG | + | chr4_1:4950082-4950101 | None:intergenic | 35.0% | |
| ATCGCAACCAATGCAAAATT+AGG | + | chr4_1:4950504-4950523 | None:intergenic | 35.0% | |
| AACAAAAGAGGGAAATTCAG+GGG | + | chr4_1:4950560-4950579 | None:intergenic | 35.0% | |
| GAAACAAAAGAGGGAAATTC+AGG | + | chr4_1:4950562-4950581 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTTACTGTCTTGAA+TGG | + | chr4_1:4950607-4950626 | None:intergenic | 35.0% |
| TTCAAGACAGTAAAACCAAG+TGG | - | chr4_1:4950607-4950626 | Msa0530870:intron | 35.0% | |
| TCAAGACAGTAAAACCAAGT+GGG | - | chr4_1:4950608-4950627 | Msa0530870:intron | 35.0% | |
| GAGCAAGTTTCAGATTTATG+GGG | - | chr4_1:4950641-4950660 | Msa0530870:intron | 35.0% | |
| GATTTATGGGGCAAAGAATA+TGG | - | chr4_1:4950653-4950672 | Msa0530870:intron | 35.0% | |
| TCTTCTTCATGACTCATGAA+TGG | - | chr4_1:4950695-4950714 | Msa0530870:intron | 35.0% | |
| TTGCAAAAGGGGTAAACTTA+GGG | - | chr4_1:4950745-4950764 | Msa0530870:intron | 35.0% | |
| ! | CTTTGCACTAGTTGTGATTT+TGG | + | chr4_1:4950815-4950834 | None:intergenic | 35.0% |
| ATCACAACTAGTGCAAAGTT+AGG | - | chr4_1:4950817-4950836 | Msa0530870:intron | 35.0% | |
| TCACAACTAGTGCAAAGTTA+GGG | - | chr4_1:4950818-4950837 | Msa0530870:intron | 35.0% | |
| ! | GCTGATAAACTAGTTTAGAG+TGG | + | chr4_1:4950953-4950972 | None:intergenic | 35.0% |
| AGTTTGAATATAGGCCTCTT+TGG | - | chr4_1:4951021-4951040 | Msa0530870:CDS | 35.0% | |
| !!! | AATTCTTTTGGTTTGGCGTT+TGG | - | chr4_1:4951374-4951393 | Msa0530870:intron | 35.0% |
| TCCTATAAGTCACATTGAAG+TGG | + | chr4_1:4951423-4951442 | None:intergenic | 35.0% | |
| TGTTTGCAATTACGAATGAC+AGG | + | chr4_1:4951494-4951513 | None:intergenic | 35.0% | |
| !!! | TTGGCGTTTTTTGCATTTGA+AGG | - | chr4_1:4951798-4951817 | Msa0530870:intron | 35.0% |
| !!! | TGGCGTTTTTTGCATTTGAA+GGG | - | chr4_1:4951799-4951818 | Msa0530870:intron | 35.0% |
| !!! | TGTGTTGTTTTTGTTAGGGT+AGG | - | chr4_1:4951847-4951866 | Msa0530870:intron | 35.0% |
| !!! | GTGTTGTTTTTGTTAGGGTA+GGG | - | chr4_1:4951848-4951867 | Msa0530870:intron | 35.0% |
| !! | ATTTGGTGTCTATGCTTCAT+AGG | + | chr4_1:4951982-4952001 | None:intergenic | 35.0% |
| TATTGAACTGAAGTCATGTC+TGG | + | chr4_1:4952098-4952117 | None:intergenic | 35.0% | |
| !! | TATGAAATGTTGGTGCTATG+TGG | - | chr4_1:4952116-4952135 | Msa0530870:intron | 35.0% |
| GCTAATTTATGTTCTGTGAG+AGG | - | chr4_1:4952138-4952157 | Msa0530870:intron | 35.0% | |
| ACTACCAACAGTCCTATTAT+TGG | - | chr4_1:4952275-4952294 | Msa0530870:intron | 35.0% | |
| TTGTGTCCAACATAAGTTCA+TGG | - | chr4_1:4952307-4952326 | Msa0530870:intron | 35.0% | |
| ! | GTCAATTGTGAAGAAAGTGT+TGG | - | chr4_1:4952347-4952366 | Msa0530870:intron | 35.0% |
| !! | ACATGTAATCCGTTGTTTCT+TGG | - | chr4_1:4952556-4952575 | Msa0530870:intron | 35.0% |
| TGAAGAGAACCAAGAAACAA+CGG | + | chr4_1:4952568-4952587 | None:intergenic | 35.0% | |
| TTTAATGTGAAACTGGCGTA+TGG | - | chr4_1:4952656-4952675 | Msa0530870:intron | 35.0% | |
| GTTCACTAGATGATAATCCT+CGG | - | chr4_1:4952771-4952790 | Msa0530870:intron | 35.0% | |
| ! | TCCCTATATTTTCACTCAGT+TGG | - | chr4_1:4952861-4952880 | Msa0530870:intron | 35.0% |
| CCCAACTGAGTGAAAATATA+GGG | + | chr4_1:4952865-4952884 | None:intergenic | 35.0% | |
| ! | CCCTATATTTTCACTCAGTT+GGG | - | chr4_1:4952862-4952881 | Msa0530870:intron | 35.0% |
| ACCCAACTGAGTGAAAATAT+AGG | + | chr4_1:4952866-4952885 | None:intergenic | 35.0% | |
| CCTTACCAAATAGAAACTAC+AGG | + | chr4_1:4952956-4952975 | None:intergenic | 35.0% | |
| CCTGTAGTTTCTATTTGGTA+AGG | - | chr4_1:4952953-4952972 | Msa0530870:intron | 35.0% | |
| GATATGTGAAAATTACAGGG+AGG | + | chr4_1:4953009-4953028 | None:intergenic | 35.0% | |
| CCTCGATATGTGAAAATTAC+AGG | + | chr4_1:4953013-4953032 | None:intergenic | 35.0% | |
| ! | CCTGTAATTTTCACATATCG+AGG | - | chr4_1:4953010-4953029 | Msa0530870:intron | 35.0% |
| ! | ATTTTCACATATCGAGGTGT+TGG | - | chr4_1:4953016-4953035 | Msa0530870:intron | 35.0% |
| CCTTGATGAACAGAAATGAT+AGG | + | chr4_1:4953079-4953098 | None:intergenic | 35.0% | |
| CCTATCATTTCTGTTCATCA+AGG | - | chr4_1:4953076-4953095 | Msa0530870:intron | 35.0% | |
| ! | CCCTATTTTCCGATAAGAAT+TGG | - | chr4_1:4953110-4953129 | Msa0530870:intron | 35.0% |
| AGTGAAAAGTGGAAACTACA+AGG | + | chr4_1:4953195-4953214 | None:intergenic | 35.0% | |
| CACCTAAGTATCCAACAAAT+TGG | - | chr4_1:4953570-4953589 | Msa0530870:intron | 35.0% | |
| AGGGATAACTTTATGTTGGT+TGG | + | chr4_1:4953690-4953709 | None:intergenic | 35.0% | |
| ! | CAAGCTCTTTTACATCTTAC+AGG | + | chr4_1:4953710-4953729 | None:intergenic | 35.0% |
| TTAGGCTAGAAAACCAATCA+AGG | - | chr4_1:4953823-4953842 | Msa0530870:intron | 35.0% | |
| TAGGCTAGAAAACCAATCAA+GGG | - | chr4_1:4953824-4953843 | Msa0530870:intron | 35.0% | |
| GGTAGGGTAAAGGATAATAA+AGG | + | chr4_1:4953916-4953935 | None:intergenic | 35.0% | |
| TATCCTTTACCCTACCAAAA+TGG | - | chr4_1:4953920-4953939 | Msa0530870:intron | 35.0% | |
| !! | ATACCATTTTGGTAGGGTAA+AGG | + | chr4_1:4953926-4953945 | None:intergenic | 35.0% |
| !! | CCAAGTATACCATTTTGGTA+GGG | + | chr4_1:4953932-4953951 | None:intergenic | 35.0% |
| ! | AGAAGCCAAGTATACCATTT+TGG | + | chr4_1:4953937-4953956 | None:intergenic | 35.0% |
| TTTCTTTCTCTCTCTGCAAA+CGG | - | chr4_1:4954020-4954039 | Msa0530870:intron | 35.0% | |
| AGAATTTGGTTATAGCGTTG+AGG | - | chr4_1:4954278-4954297 | Msa0530870:intron | 35.0% | |
| ACAAAATACTGTGCACAAAC+GGG | + | chr4_1:4954386-4954405 | None:intergenic | 35.0% | |
| CACAAAATACTGTGCACAAA+CGG | + | chr4_1:4954387-4954406 | None:intergenic | 35.0% | |
| ! | ATTTTGTGGTAAGTCGATAG+TGG | - | chr4_1:4954399-4954418 | Msa0530870:intron | 35.0% |
| ! | TTTTGTGGTAAGTCGATAGT+GGG | - | chr4_1:4954400-4954419 | Msa0530870:intron | 35.0% |
| ! | TACTGTTACTTAGACAAGTG+TGG | - | chr4_1:4954492-4954511 | Msa0530870:intron | 35.0% |
| ATCCTTGACAACTAATGTGT+GGG | + | chr4_1:4954578-4954597 | None:intergenic | 35.0% | |
| AATCCTTGACAACTAATGTG+TGG | + | chr4_1:4954579-4954598 | None:intergenic | 35.0% | |
| !! | AGCTGTTTTCTATAGCATGT+AGG | - | chr4_1:4954739-4954758 | Msa0530870:intron | 35.0% |
| !!! | GTTTTGTTTAGCATACCCTA+CGG | - | chr4_1:4955273-4955292 | Msa0530870:intron | 35.0% |
| ATAGGCCTCATGATTTAGAA+AGG | + | chr4_1:4955299-4955318 | None:intergenic | 35.0% | |
| TAAATCATGAGGCCTATGTT+TGG | - | chr4_1:4955302-4955321 | Msa0530870:CDS | 35.0% | |
| GGAGAGAAGAAGAAGAAGTT+AGG | + | chr4_1:4949999-4950018 | None:intergenic | 40.0% | |
| AGAGAGTAATGAAACAGCGA+CGG | + | chr4_1:4950037-4950056 | None:intergenic | 40.0% | |
| AACTGGATTGAGTAGAGAAG+TGG | + | chr4_1:4950065-4950084 | None:intergenic | 40.0% | |
| GATGTAATGCCAATTGCTAC+TGG | - | chr4_1:4950214-4950233 | Msa0530870:intron | 40.0% | |
| ACAAAAGAGGGAAATTCAGG+GGG | + | chr4_1:4950559-4950578 | None:intergenic | 40.0% | |
| CAAGACAGTAAAACCAAGTG+GGG | - | chr4_1:4950609-4950628 | Msa0530870:intron | 40.0% | |
| GTTGCAAAAGGGGTAAACTT+AGG | - | chr4_1:4950744-4950763 | Msa0530870:intron | 40.0% | |
| TGCAAAAGGGGTAAACTTAG+GGG | - | chr4_1:4950746-4950765 | Msa0530870:intron | 40.0% | |
| CACAACTAGTGCAAAGTTAG+GGG | - | chr4_1:4950819-4950838 | Msa0530870:intron | 40.0% | |
| ACAACTAGTGCAAAGTTAGG+GGG | - | chr4_1:4950820-4950839 | Msa0530870:intron | 40.0% | |
| TCAAATAGGTCGATCCAAAG+AGG | + | chr4_1:4951038-4951057 | None:intergenic | 40.0% | |
| ATAAGCACTTGTGATGCTGT+TGG | - | chr4_1:4951072-4951091 | Msa0530870:intron | 40.0% | |
| TAAGCACTTGTGATGCTGTT+GGG | - | chr4_1:4951073-4951092 | Msa0530870:intron | 40.0% | |
| GCCACTTCAATGTGACTTAT+AGG | - | chr4_1:4951419-4951438 | Msa0530870:intron | 40.0% | |
| CTTCAGTCTGAATGTGTGTT+AGG | - | chr4_1:4951465-4951484 | Msa0530870:intron | 40.0% | |
| CTTGAAATTGACCATCCTGA+AGG | - | chr4_1:4951876-4951895 | Msa0530870:intron | 40.0% | |
| ATAGACACCAAATACGACAC+TGG | - | chr4_1:4951989-4952008 | Msa0530870:intron | 40.0% | |
| GTCTGGTATCAAAAACGTGT+CGG | + | chr4_1:4952081-4952100 | None:intergenic | 40.0% | |
| CACAAGGACAAAACAAGAAC+AGG | + | chr4_1:4952496-4952515 | None:intergenic | 40.0% | |
| !! | GAACTTGTTGTAATTGCTGC+TGG | - | chr4_1:4952598-4952617 | Msa0530870:intron | 40.0% |
| GTTGGTTGGCAATACTTCTA+AGG | + | chr4_1:4953676-4953695 | None:intergenic | 40.0% | |
| AGGCTAGAAAACCAATCAAG+GGG | - | chr4_1:4953825-4953844 | Msa0530870:intron | 40.0% | |
| CTCTCATAACAAGGATCCAA+TGG | - | chr4_1:4953854-4953873 | Msa0530870:intron | 40.0% | |
| CCCTACCAAAATGGTATACT+TGG | - | chr4_1:4953929-4953948 | Msa0530870:intron | 40.0% | |
| !! | GCCAAGTATACCATTTTGGT+AGG | + | chr4_1:4953933-4953952 | None:intergenic | 40.0% |
| TCTTGCATGCAAACTTCTTC+TGG | - | chr4_1:4954238-4954257 | Msa0530870:intron | 40.0% | |
| ! | ATTTGGTTATAGCGTTGAGG+AGG | - | chr4_1:4954281-4954300 | Msa0530870:intron | 40.0% |
| !! | AGCATGATGTTGTCTGGTTT+TGG | - | chr4_1:4954333-4954352 | Msa0530870:intron | 40.0% |
| ! | CGTTTGTGCACAGTATTTTG+TGG | - | chr4_1:4954385-4954404 | Msa0530870:intron | 40.0% |
| TTTGTGGTAAGTCGATAGTG+GGG | - | chr4_1:4954401-4954420 | Msa0530870:intron | 40.0% | |
| ATCATGTTGTTGCATGGTTC+TGG | - | chr4_1:4954709-4954728 | Msa0530870:intron | 40.0% | |
| CATGATTTAGAAAGGCCGTA+GGG | + | chr4_1:4955291-4955310 | None:intergenic | 40.0% | |
| TCATGATTTAGAAAGGCCGT+AGG | + | chr4_1:4955292-4955311 | None:intergenic | 40.0% | |
| TACGGCCTTTCTAAATCATG+AGG | - | chr4_1:4955291-4955310 | Msa0530870:CDS | 40.0% | |
| GGAAAAGTGAAATGGCAAGA+AGG | - | chr4_1:4955543-4955562 | Msa0530870:five_prime_UTR | 40.0% | |
| !!! | TGATTTTTTTCGGTGGTGGC+TGG | + | chr4_1:4949807-4949826 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGTA+TGG | + | chr4_1:4949841-4949860 | None:intergenic | 45.0% | |
| TGGATTGAGTAGAGAAGTGG+TGG | + | chr4_1:4950062-4950081 | None:intergenic | 45.0% | |
| ATGGGGCAAAGAATATGGCT+TGG | - | chr4_1:4950658-4950677 | Msa0530870:intron | 45.0% | |
| TGGGGCAAAGAATATGGCTT+GGG | - | chr4_1:4950659-4950678 | Msa0530870:intron | 45.0% | |
| ! | CAAAGAATATGGCTTGGGAC+TGG | - | chr4_1:4950664-4950683 | Msa0530870:intron | 45.0% |
| GCAAAAGGGGTAAACTTAGG+GGG | - | chr4_1:4950747-4950766 | Msa0530870:intron | 45.0% | |
| CAACTAGTGCAAAGTTAGGG+GGG | - | chr4_1:4950821-4950840 | Msa0530870:intron | 45.0% | |
| GATGCTGTTGGGAGAATTTG+TGG | - | chr4_1:4951084-4951103 | Msa0530870:intron | 45.0% | |
| AGTCACATTGAAGTGGCATC+AGG | + | chr4_1:4951416-4951435 | None:intergenic | 45.0% | |
| CAGTCTGAATGTGTGTTAGG+TGG | - | chr4_1:4951468-4951487 | Msa0530870:intron | 45.0% | |
| ! | ACACTAACCTTAGTGCCGAA+AGG | + | chr4_1:4951903-4951922 | None:intergenic | 45.0% |
| CATCATGCCAGTGTCGTATT+TGG | + | chr4_1:4951999-4952018 | None:intergenic | 45.0% | |
| ACGGCTCCATGAACTTATGT+TGG | + | chr4_1:4952316-4952335 | None:intergenic | 45.0% | |
| CTAAACTAGCCCACCCAAAT+TGG | - | chr4_1:4952408-4952427 | Msa0530870:intron | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+GGG | + | chr4_1:4952424-4952443 | None:intergenic | 45.0% |
| AATCGAACCTGAGACCTTGA+GGG | - | chr4_1:4952441-4952460 | Msa0530870:intron | 45.0% | |
| CGCAATTGTCCCTTAAAAGC+TGG | - | chr4_1:4952983-4953002 | Msa0530870:intron | 45.0% | |
| !! | CATATCGAGGTGTTGGTCTT+TGG | - | chr4_1:4953023-4953042 | Msa0530870:intron | 45.0% |
| !!! | CATTTGGGTTTTGGTTGCTG+AGG | + | chr4_1:4953234-4953253 | None:intergenic | 45.0% |
| AGGAAGCCTGAAAGCAACAA+TGG | - | chr4_1:4953426-4953445 | Msa0530870:intron | 45.0% | |
| ! | GGTTGGCAATACTTCTAAGG+AGG | + | chr4_1:4953673-4953692 | None:intergenic | 45.0% |
| ATTGTCAGTCTATGCTGTCG+CGG | - | chr4_1:4953757-4953776 | Msa0530870:intron | 45.0% | |
| CGGTGGTAAACTGTCATGTT+TGG | - | chr4_1:4953777-4953796 | Msa0530870:intron | 45.0% | |
| AAAAGGATAGTTGGATGCCC+AGG | - | chr4_1:4954167-4954186 | Msa0530870:intron | 45.0% | |
| TGCATGCAAACTTCTTCTGG+AGG | - | chr4_1:4954241-4954260 | Msa0530870:intron | 45.0% | |
| AGGATGAGCATGATGTTGTC+TGG | - | chr4_1:4954327-4954346 | Msa0530870:intron | 45.0% | |
| !!! | TGATGTTGTCTGGTTTTGGC+TGG | - | chr4_1:4954337-4954356 | Msa0530870:intron | 45.0% |
| !! | TAGGCTCTAAATGGAGACTG+AGG | + | chr4_1:4954849-4954868 | None:intergenic | 45.0% |
| ATTTGTGGAACAGCTCGAAG+TGG | - | chr4_1:4955148-4955167 | Msa0530870:CDS | 45.0% | |
| GCGATCCTGATCATCACTAA+TGG | - | chr4_1:4955201-4955220 | Msa0530870:intron | 45.0% | |
| GGATGCCATTAGTGATGATC+AGG | + | chr4_1:4955209-4955228 | None:intergenic | 45.0% | |
| TTTGACAGAATCCATGGCTC+AGG | + | chr4_1:4955407-4955426 | None:intergenic | 45.0% | |
| !!! | TTATTTTATTTTTTTGTAAT+AGG | - | chr4_1:4950786-4950805 | Msa0530870:intron | 5.0% |
| AGTAATGAAACAGCGACGGC+GGG | + | chr4_1:4950033-4950052 | None:intergenic | 50.0% | |
| GAGTAATGAAACAGCGACGG+CGG | + | chr4_1:4950034-4950053 | None:intergenic | 50.0% | |
| CGCTCATGACCAGTAGCAAT+TGG | + | chr4_1:4950226-4950245 | None:intergenic | 50.0% | |
| TCATGAGCGTGAGGAGATTC+AGG | - | chr4_1:4950237-4950256 | Msa0530870:intron | 50.0% | |
| GGAGATTCAGGCTCAACTTG+AGG | - | chr4_1:4950249-4950268 | Msa0530870:intron | 50.0% | |
| GCTCAACAAAACACCCCACT+TGG | + | chr4_1:4950625-4950644 | None:intergenic | 50.0% | |
| GACCATCCTGAAGGTCCTTT+CGG | - | chr4_1:4951885-4951904 | Msa0530870:intron | 50.0% | |
| ! | TTAGTGCCGAAAGGACCTTC+AGG | + | chr4_1:4951894-4951913 | None:intergenic | 50.0% |
| TGAAGGTCCTTTCGGCACTA+AGG | - | chr4_1:4951893-4951912 | Msa0530870:intron | 50.0% | |
| ! | GATTCTCTCCGGTGCCAATT+TGG | + | chr4_1:4952425-4952444 | None:intergenic | 50.0% |
| GTCTCAGGTTCGATTCTCTC+CGG | + | chr4_1:4952436-4952455 | None:intergenic | 50.0% | |
| GAATCGAACCTGAGACCTTG+AGG | - | chr4_1:4952440-4952459 | Msa0530870:intron | 50.0% | |
| ATCGAACCTGAGACCTTGAG+GGG | - | chr4_1:4952442-4952461 | Msa0530870:intron | 50.0% | |
| AAAAAGGAGTCTCCCCCTCA+AGG | + | chr4_1:4952458-4952477 | None:intergenic | 50.0% | |
| ! | ACAGGGAGGCCAGCTTTTAA+GGG | + | chr4_1:4952995-4953014 | None:intergenic | 50.0% |
| ! | TACAGGGAGGCCAGCTTTTA+AGG | + | chr4_1:4952996-4953015 | None:intergenic | 50.0% |
| GGGACTCAGCTCTCATAACA+AGG | - | chr4_1:4953845-4953864 | Msa0530870:intron | 50.0% | |
| !!! | TGTCTGGTTTTGGCTGGAGA+AGG | - | chr4_1:4954343-4954362 | Msa0530870:intron | 50.0% |
| GCACAAACGGGACATTCATG+AGG | + | chr4_1:4954374-4954393 | None:intergenic | 50.0% | |
| ! | AATTACGGGGGCGCATATCT+TGG | + | chr4_1:4954527-4954546 | None:intergenic | 50.0% |
| CGCCCACACATTAGTTGTCA+AGG | - | chr4_1:4954573-4954592 | Msa0530870:intron | 50.0% | |
| ! | GACCTGGTGGATCACCTTAT+GGG | - | chr4_1:4955174-4955193 | Msa0530870:CDS | 50.0% |
| ATGCTCAATTGCCTGAGCCA+TGG | - | chr4_1:4955393-4955412 | Msa0530870:CDS | 50.0% | |
| TAATGAAACAGCGACGGCGG+GGG | + | chr4_1:4950031-4950050 | None:intergenic | 55.0% | |
| GTAATGAAACAGCGACGGCG+GGG | + | chr4_1:4950032-4950051 | None:intergenic | 55.0% | |
| GCAGGTGACGACAGTACTAC+TGG | - | chr4_1:4950172-4950191 | Msa0530870:CDS | 55.0% | |
| TGCTACTGGTCATGAGCGTG+AGG | - | chr4_1:4950228-4950247 | Msa0530870:intron | 55.0% | |
| AAGAGGGAAATTCAGGGGGC+TGG | + | chr4_1:4950555-4950574 | None:intergenic | 55.0% | |
| AGGGGTAAACTTAGGGGGAC+TGG | - | chr4_1:4950752-4950771 | Msa0530870:intron | 55.0% | |
| TGCCGAAAGGACCTTCAGGA+TGG | + | chr4_1:4951890-4951909 | None:intergenic | 55.0% | |
| TAGCCCACCCAAATTGGCAC+CGG | - | chr4_1:4952414-4952433 | Msa0530870:intron | 55.0% | |
| ! | TCTCCGGTGCCAATTTGGGT+GGG | + | chr4_1:4952420-4952439 | None:intergenic | 55.0% |
| TCGAACCTGAGACCTTGAGG+GGG | - | chr4_1:4952443-4952462 | Msa0530870:intron | 55.0% | |
| GAGAGCTGAGTCCCCTTGAT+TGG | + | chr4_1:4953839-4953858 | None:intergenic | 55.0% | |
| AGGATAGTTGGATGCCCAGG+TGG | - | chr4_1:4954170-4954189 | Msa0530870:intron | 55.0% | |
| GGGCGTGCAAGCACAAAGTA+AGG | + | chr4_1:4954558-4954577 | None:intergenic | 55.0% | |
| GTGGAACAGCTCGAAGTGGT+AGG | - | chr4_1:4955152-4955171 | Msa0530870:CDS | 55.0% | |
| ! | GGACCTGGTGGATCACCTTA+TGG | - | chr4_1:4955173-4955192 | Msa0530870:CDS | 55.0% |
| TGCCCATAAGGTGATCCACC+AGG | + | chr4_1:4955179-4955198 | None:intergenic | 55.0% | |
| GGTGGATCACCTTATGGGCA+CGG | - | chr4_1:4955179-4955198 | Msa0530870:intron | 55.0% | |
| ! | CTCTCCGGTGCCAATTTGGG+TGG | + | chr4_1:4952421-4952440 | None:intergenic | 60.0% |
| AGTCTCCCCCTCAAGGTCTC+AGG | + | chr4_1:4952451-4952470 | None:intergenic | 60.0% | |
| GTCAGTCTATGCTGTCGCGG+TGG | - | chr4_1:4953760-4953779 | Msa0530870:intron | 60.0% | |
| GTTGGATGCCCAGGTGGTGA+AGG | - | chr4_1:4954176-4954195 | Msa0530870:intron | 60.0% | |
| ACTCACCGCCTTCACCACCT+GGG | + | chr4_1:4954187-4954206 | None:intergenic | 60.0% | |
| AACTCACCGCCTTCACCACC+TGG | + | chr4_1:4954188-4954207 | None:intergenic | 60.0% | |
| CAGCTCGAAGTGGTAGGACC+TGG | - | chr4_1:4955158-4955177 | Msa0530870:CDS | 60.0% | |
| CTCGAAGTGGTAGGACCTGG+TGG | - | chr4_1:4955161-4955180 | Msa0530870:CDS | 60.0% | |
| TCAGGATCGCCGTGCCCATA+AGG | + | chr4_1:4955191-4955210 | None:intergenic | 60.0% | |
| GGATGCCCAGGTGGTGAAGG+CGG | - | chr4_1:4954179-4954198 | Msa0530870:intron | 65.0% | |
| CGACGGCGGGGGAAGGAGAT+CGG | + | chr4_1:4950020-4950039 | None:intergenic | 70.0% | |
| GAAACAGCGACGGCGGGGGA+AGG | + | chr4_1:4950027-4950046 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4949802 | 4955570 | 4949802 | ID=Msa0530870;Name=Msa0530870 |
| chr4_1 | mRNA | 4949802 | 4955570 | 4949802 | ID=Msa0530870-mRNA-1;Parent=Msa0530870;Name=Msa0530870-mRNA-1;_AED=0.12;_eAED=0.12;_QI=131|1|1|1|0.83|0.71|7|350|158 |
| chr4_1 | exon | 4949802 | 4950211 | 4949802 | ID=Msa0530870-mRNA-1:exon:1515;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4950966 | 4951045 | 4950966 | ID=Msa0530870-mRNA-1:exon:1514;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4951172 | 4951238 | 4951172 | ID=Msa0530870-mRNA-1:exon:1513;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4953458 | 4953508 | 4953458 | ID=Msa0530870-mRNA-1:exon:1512;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4955102 | 4955196 | 4955102 | ID=Msa0530870-mRNA-1:exon:1511;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4955291 | 4955502 | 4955291 | ID=Msa0530870-mRNA-1:exon:1510;Parent=Msa0530870-mRNA-1 |
| chr4_1 | exon | 4955528 | 4955570 | 4955528 | ID=Msa0530870-mRNA-1:exon:1509;Parent=Msa0530870-mRNA-1 |
| chr4_1 | five_prime_UTR | 4955528 | 4955570 | 4955528 | ID=Msa0530870-mRNA-1:five_prime_utr;Parent=Msa0530870-mRNA-1 |
| chr4_1 | five_prime_UTR | 4955415 | 4955502 | 4955415 | ID=Msa0530870-mRNA-1:five_prime_utr;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4955291 | 4955414 | 4955291 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4955102 | 4955196 | 4955102 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4953458 | 4953508 | 4953458 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4951172 | 4951238 | 4951172 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4950966 | 4951045 | 4950966 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | CDS | 4950152 | 4950211 | 4950152 | ID=Msa0530870-mRNA-1:cds;Parent=Msa0530870-mRNA-1 |
| chr4_1 | three_prime_UTR | 4949802 | 4950151 | 4949802 | ID=Msa0530870-mRNA-1:three_prime_utr;Parent=Msa0530870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
