AlfalfaGEDB | Msa0628500

M. sativa cultivar zhongmu-4 / Msa0628500

KEGG: K09489
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0008144 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0017076 GO:0030054 GO:0030312 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0055044 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00012.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628500	XP_013454751.1	98.590	851	12	0	1	851	1	851	0.0	1737

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628500	sp\|Q9S7C0\|HSP7O_ARATH	75.117	852	189	6	1	850	1	831	0.0	1323

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628500	A0A072UGG8	98.590	851	12	0	1	851	1	851	0.0	1737

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0628500	0.808579	2.889830e-50	-8.615850e-47
Msa0002560	Msa0628500	0.831622	1.503900e-55	-8.615850e-47
Msa0002680	Msa0628500	0.848107	7.566339e-60	-8.615850e-47
Msa0002710	Msa0628500	0.823961	1.044932e-53	-8.615850e-47
Msa0003220	Msa0628500	0.873403	1.510581e-67	-8.615850e-47
Msa0003270	Msa0628500	0.843000	1.833634e-58	-8.615850e-47
Msa0004540	Msa0628500	0.842117	3.145046e-58	-8.615850e-47
Msa0005000	Msa0628500	-0.809152	2.179196e-50	-8.615850e-47
Msa0005270	Msa0628500	0.816738	4.736343e-52	-8.615850e-47
Msa0007970	Msa0628500	0.809239	2.087931e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0628500	MtrunA17_Chr4g0004331	98.590	851	12	0	1	851	1	851	0.0	1737
Msa0628500	MtrunA17_Chr2g0331901	78.953	860	170	4	1	851	1	858	0.0	1382
Msa0628500	MtrunA17_Chr3g0098761	49.235	784	348	7	1	780	1	738	0.0	775
Msa0628500	MtrunA17_Chr5g0444001	57.864	515	206	3	1	512	1	507	0.0	624
Msa0628500	MtrunA17_Chr4g0073741	28.571	707	392	15	4	689	9	623	1.26e-83	281
Msa0628500	MtrunA17_Chr7g0262821	34.475	438	271	4	4	438	10	434	4.23e-82	276
Msa0628500	MtrunA17_Chr7g0223181	34.703	438	270	4	4	438	10	434	4.93e-82	276
Msa0628500	MtrunA17_Chr7g0223291	34.703	438	270	4	4	438	10	434	1.07e-81	276
Msa0628500	MtrunA17_Chr4g0031301	34.018	438	273	4	4	438	10	434	4.19e-81	274
Msa0628500	MtrunA17_Chr4g0031321	33.790	438	274	4	4	438	10	434	2.29e-79	269

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0628500	AT1G79930.1	75.117	852	189	6	1	850	1	831	1323
Msa0628500	AT1G79930.2	78.005	782	169	2	1	781	1	780	1287
Msa0628500	AT1G79920.1	78.135	654	138	3	1	653	1	650	1070
Msa0628500	AT1G79920.3	78.287	654	137	3	1	653	1	650	1053
Msa0628500	AT1G79920.2	78.287	654	137	3	1	653	1	650	1053
Msa0628500	AT1G79920.4	78.287	654	137	3	1	653	1	650	1053
Msa0628500	AT1G11660.4	48.407	816	362	9	1	812	1	761	766
Msa0628500	AT1G11660.3	48.407	816	362	9	1	812	1	761	766
Msa0628500	AT1G11660.1	48.407	816	362	9	1	812	1	761	766
Msa0628500	AT1G11660.2	46.983	779	354	9	38	812	1	724	702

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Find 251 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGCAGCTGAAAGTGT+TGG	0.585816	4_3:-9202279	Msa0628500:CDS
AAAGTTCGTTTGAATGTGCA+TGG	0.566959	4_3:-9201105	Msa0628500:CDS
AAATGTTCCTGTATTTGAGT+TGG	0.487806	4_3:-9200148	Msa0628500:CDS
AACAAACCAACCAACATAGA+GGG	0.620326	4_3:+9198133	None:intergenic
AACATCGGCATCATTGCCAT+TGG	0.473099	4_3:+9200836	None:intergenic
AACCCCAGGGGTATCAGCAT+TGG	0.491129	4_3:+9200794	None:intergenic
AACTTCAGGAGGTGGAAGAT+TGG	0.468425	4_3:-9199833	Msa0628500:CDS
AAGGCCAATGCTGATACCCC+TGG	0.506668	4_3:-9200798	Msa0628500:CDS
AAGGGAACTCTGCTGATTGT+CGG	0.487246	4_3:+9201390	None:intergenic
AAGTAACGCGCCTGAATCAA+CGG	0.518110	4_3:+9202626	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACAGATTAAGAGACTTAT+TGG	-	chr4_3:9198477-9198496	Msa0628500:CDS	30.0%
CACAGATTAAGAGACTTATT+GGG	-	chr4_3:9198478-9198497	Msa0628500:CDS	30.0%
CGGTTAATGATTGTTGTATT+GGG	-	chr4_3:9198691-9198710	Msa0628500:intron	30.0%
TGCAGATCAGTAAAATAACA+CGG	+	chr4_3:9198720-9198739	None:intergenic	30.0%
TGATGATATACATATGGTTG+AGG	-	chr4_3:9199271-9199290	Msa0628500:CDS	30.0%
TTATCATGAGTGGAAGAAAT+AGG	+	chr4_3:9199513-9199532	None:intergenic	30.0%
ATTATTCCTAAAGGAACACA+CGG	+	chr4_3:9199538-9199557	None:intergenic	30.0%
TCTGATATATACCTCTGTTA+AGG	-	chr4_3:9199596-9199615	Msa0628500:intron	30.0%
CATAAATGCACAATAGGTTA+TGG	+	chr4_3:9200187-9200206	None:intergenic	30.0%
TGCATCTTGCATATTAACAT+CGG	+	chr4_3:9200387-9200406	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	9197790	9203437	9197790	ID=Msa0628500;Name=Msa0628500
chr4_3	mRNA	9197790	9203437	9197790	ID=Msa0628500-mRNA-1;Parent=Msa0628500;Name=Msa0628500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=260\|1\|1\|1\|0.88\|0.8\|10\|522\|851
chr4_3	exon	9197790	9198528	9197790	ID=Msa0628500-mRNA-1:exon:2786;Parent=Msa0628500-mRNA-1
chr4_3	exon	9199209	9199339	9199209	ID=Msa0628500-mRNA-1:exon:2785;Parent=Msa0628500-mRNA-1
chr4_3	exon	9199423	9199572	9199423	ID=Msa0628500-mRNA-1:exon:2784;Parent=Msa0628500-mRNA-1
chr4_3	exon	9199767	9199913	9199767	ID=Msa0628500-mRNA-1:exon:2783;Parent=Msa0628500-mRNA-1
chr4_3	exon	9200008	9200196	9200008	ID=Msa0628500-mRNA-1:exon:2782;Parent=Msa0628500-mRNA-1
chr4_3	exon	9200734	9200961	9200734	ID=Msa0628500-mRNA-1:exon:2781;Parent=Msa0628500-mRNA-1
chr4_3	exon	9201080	9201175	9201080	ID=Msa0628500-mRNA-1:exon:2780;Parent=Msa0628500-mRNA-1
chr4_3	exon	9201258	9201485	9201258	ID=Msa0628500-mRNA-1:exon:2779;Parent=Msa0628500-mRNA-1
chr4_3	exon	9201773	9202981	9201773	ID=Msa0628500-mRNA-1:exon:2778;Parent=Msa0628500-mRNA-1
chr4_3	exon	9203217	9203437	9203217	ID=Msa0628500-mRNA-1:exon:2777;Parent=Msa0628500-mRNA-1
chr4_3	five_prime_UTR	9203217	9203437	9203217	ID=Msa0628500-mRNA-1:five_prime_utr;Parent=Msa0628500-mRNA-1
chr4_3	five_prime_UTR	9202943	9202981	9202943	ID=Msa0628500-mRNA-1:five_prime_utr;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9201773	9202942	9201773	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9201258	9201485	9201258	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9201080	9201175	9201080	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9200734	9200961	9200734	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9200008	9200196	9200008	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9199767	9199913	9199767	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9199423	9199572	9199423	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9199209	9199339	9199209	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	CDS	9198312	9198528	9198312	ID=Msa0628500-mRNA-1:cds;Parent=Msa0628500-mRNA-1
chr4_3	three_prime_UTR	9197790	9198311	9197790	ID=Msa0628500-mRNA-1:three_prime_utr;Parent=Msa0628500-mRNA-1

Gene Sequence

>Msa0628500

ATGAGTGTGGTGGGATTTGATTTTGGTAACGAGAGTTGCATTGTTGCTGTTGCAAGACAGAGAGGGATTGATGTTGTGTTAAACGATGAATCTAAGCGCGAAACACCGGCGATTGTATGTTTCGGTGAAAAGCAGCGGTTTATTGGTACTGCTGGTGCTGCTTCAACTATGATGAATCCTAAGAATTCAATTTCACAGATTAAGAGACTTATTGGGAAATTGTATTCGGATCCGGATTTGCAGCGTGATCTTAAGTCTCTGCCTTTTAGTGTGACTGAGGGGCCGGATGGGTATCCGTTGATTCAGGCGCGTTACTTGGGGGAGGTTAAGCTGTTTACGCCGACACAAGTGTTTGCGATGATGTTGGGGAACATGAAGGAGATAGCTGAGAAGAATCTTAATGCTGCGGTTAATGATTGTTGTATTGGGATTCCGTGTTATTTTACTGATCTGCAGAGAAGGGCTGTGTTGGATGCTGCAACTATTGCTGGTTTGCATCCGCTTCGTTTGCTTCATGAGACTACTGCGACTGCATTGGCGTATGGGATTTATAAGACGGATCTGCCCGAGAATGATCAGTTGAATGTGGCTTTTGTGGATATTGGACATGCTAGTATGCAGGTTTGCATTGCTGGGTTTAAAAAGGGGCAGCTGAAAGTGTTGGCACATTCGTTTGATAGGTCTCTTGGTGGTAGGGATTTTGATGAGGTTTTGTTTCATCATTTTGCTGCAAAGTTTAAGGAGGAGTACAAAATTGATGTGCTTTCTAATGCTAGGGCTTGTTTGAGGCTTAGGGCATCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATCCTATAGTGCCCCTGAACATTGAGTGCTTGATGGATGAGAAGGATGTAAAGGGTATCATGAAGCGTGATGAGTTTGAGGAACTGAGTCTCCCGATTTTGGAGCGTGTTAAGGGACCTTTGGAGAGGGCACTTGCTGAAGCAGGACTCTCAGTTGATGATATACATATGGTTGAGGTCGTTGGTTCAGGCTCTCGTGTACCCGCTATAAACAAGATCTTGACAGAGTTTTTCAAGAAGGAGCCTAGGCGAACAATGAATGCCAGTGAATGTGTTGCTAAAGGGGCTGCATTGCAATGTGCTATTCTTAGCCCAACGTTTAAAGTGCGAGAATTTCAGGTCAATGAAAGCTTTCCTTTCTCGATCTCTCTTGCGTGGAAAGGTTCTGGTCCAGATGCACAGGATAGTGGACCCGACAATCAGCAGAGTTCCCTTGTTTTTCCGAAGGGTAATCCCATACCAAGTATCAAGGCACTGACATTCTACAGGTCAGGAACATTTTCCATTGATGCACAATACAGTGATGTGAATGGGCAGCAAACACCTGCTAGGATCAGCACATATACCATCGGTCCTTTTGAAGCAAAACAAAGCGAAAAGGCAAAAGTTAAAGTGAAAGTTCGTTTGAATGTGCATGGAATTGCATCTGTTGACTTGGCAACTGTCTTGGAAGAGGAAGAAGTTGACGCTTCAGTTTCCAAAGAATCAGCTAAAGAACCTACTAAGATGGAGGCTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCCAATGGCAATGATGCCGATGTTAATATGCAAGATGCAAAGGCCAATGCTGATACCCCTGGGGTTGAAAATGGCGTCCCTGAGACTGGAGATAAGCCTGCACAAATGGATGTTGATGATACCAAGGCTCCAAAGAAAAAGGTTAAGAAAACAAATGTTCCTGTATTTGAGTTGGTTTATGGAGCAATGGCACCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTATGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAGGACAAGAAAAATGCAGTAGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTTATTGCTTCTGAGAGGGAAGGTCTTACCGCCAAACTTCAGGAGGTGGAAGATTGGCTATATGAGGATGGTGAAGACGAAACTAAAGGTGTATATGTTGCCAAACTTGAAGAGCTCAAAAAGCAAGGCGACCCGATTGAAGAGCGTTACAAAGAATACGAGGAGAGGGGTACAATAATTGATCAGTTCAACTATTGTATAGGCAGTTACAGAGAAGCTGCAATGTCAACTGATCCCAAATTTGATCACATTGACATCAACGAGAAACAGAAGGTCTTGAATGAATGTGTTGAAGCTGAGAACTGGCTTCGGGAGAAGAAGCAGCAGCAGGACTCGCTTCCAAAATATGCCAACCCTGTACTCTTGGTAGCTGAAATAAGAAAGAAAGCTGAGGCTATTGATAGGTTCTGCAAGCCGATTATGACAAAACCAAGGCCAGCCAAGCCAGCTGCTCCACAAACACCACCAAGCCCAGCTTCTTCAGGTTCTGAGCAGCAGCAACCTCAGGCAGATGCGAATGCCAGCGCCAGTGAAAATGCCGGTGATAGTGAAAATCAGGCTTCATCAGCATCCACCGAACCAATGGAAACTGATAAGCCAGAGAATACAAGTTCTGCCTAA

Protein sequence

>Msa0628500

MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAASTMMNPKNSISQIKRLIGKLYSDPDLQRDLKSLPFSVTEGPDGYPLIQARYLGEVKLFTPTQVFAMMLGNMKEIAEKNLNAAVNDCCIGIPCYFTDLQRRAVLDAATIAGLHPLRLLHETTATALAYGIYKTDLPENDQLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFHHFAAKFKEEYKIDVLSNARACLRLRASCEKMKKMLSANPIVPLNIECLMDEKDVKGIMKRDEFEELSLPILERVKGPLERALAEAGLSVDDIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGAALQCAILSPTFKVREFQVNESFPFSISLAWKGSGPDAQDSGPDNQQSSLVFPKGNPIPSIKALTFYRSGTFSIDAQYSDVNGQQTPARISTYTIGPFEAKQSEKAKVKVKVRLNVHGIASVDLATVLEEEEVDASVSKESAKEPTKMEADEAPADAAAPPNGNDADVNMQDAKANADTPGVENGVPETGDKPAQMDVDDTKAPKKKVKKTNVPVFELVYGAMAPVDVQKAVEKEYEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIASEREGLTAKLQEVEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEYEERGTIIDQFNYCIGSYREAAMSTDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLPKYANPVLLVAEIRKKAEAIDRFCKPIMTKPRPAKPAAPQTPPSPASSGSEQQQPQADANASASENAGDSENQASSASTEPMETDKPENTSSA*