AlfalfaGEDB | Msa0535110

M. sativa cultivar zhongmu-4 / Msa0535110

KEGG: K14500
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535110	KEH29001.1	96.040	101	4	0	1	101	1	101	3.31e-61	205

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535110	sp\|Q9M324\|BSK6_ARATH	66.990	103	29	2	1	102	1	99	4.93e-40	144

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535110	A0A072UHU0	96.040	101	4	0	1	101	1	101	1.58e-61	205

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026130	Msa0535110	0.815448	9.197893e-52	-8.615850e-47
Msa0027230	Msa0535110	0.804495	2.101896e-49	-8.615850e-47
Msa0069330	Msa0535110	0.805911	1.062293e-49	-8.615850e-47
Msa0081520	Msa0535110	0.803773	2.970279e-49	-8.615850e-47
Msa0104550	Msa0535110	0.800088	1.697816e-48	-8.615850e-47
Msa0112790	Msa0535110	0.805610	1.228433e-49	-8.615850e-47
Msa0166590	Msa0535110	0.805102	1.569413e-49	-8.615850e-47
Msa0206840	Msa0535110	0.809507	1.828718e-50	-8.615850e-47
Msa0225100	Msa0535110	0.808846	2.534023e-50	-8.615850e-47
Msa0378720	Msa0535110	0.818274	2.134650e-52	-8.615850e-47
Msa0388990	Msa0535110	0.817215	3.700651e-52	-8.615850e-47
Msa0474730	Msa0535110	0.808577	2.892867e-50	-8.615850e-47
Msa0241830	Msa0535110	0.804998	1.650489e-49	-8.615850e-47
Msa0263080	Msa0535110	0.806234	9.082035e-50	-8.615850e-47
Msa0297790	Msa0535110	0.804844	1.777316e-49	-8.615850e-47
Msa0300270	Msa0535110	0.800083	1.701895e-48	-8.615850e-47
Msa0300320	Msa0535110	0.801109	1.051582e-48	-8.615850e-47
Msa0320590	Msa0535110	0.806327	8.682607e-50	-8.615850e-47
Msa0322900	Msa0535110	0.814332	1.625631e-51	-8.615850e-47
Msa0335800	Msa0535110	0.815929	7.187432e-52	-8.615850e-47
Msa0518030	Msa0535110	0.809946	1.471193e-50	-8.615850e-47
Msa0535110	Msa0547020	0.803570	3.272630e-49	-8.615850e-47
Msa0535110	Msa0589510	0.817170	3.789410e-52	-8.615850e-47
Msa0535110	Msa0597770	0.806825	6.816752e-50	-8.615850e-47
Msa0535110	Msa0614000	0.801245	9.862010e-49	-8.615850e-47
Msa0535110	Msa0638480	0.812623	3.861629e-51	-8.615850e-47
Msa0535110	Msa0641210	0.801355	9.362341e-49	-8.615850e-47
Msa0535110	Msa0644800	0.807729	4.384068e-50	-8.615850e-47
Msa0535110	Msa0823820	0.816795	4.599690e-52	-8.615850e-47
Msa0535110	Msa0861510	0.810593	1.067343e-50	-8.615850e-47
Msa0535110	Msa0863010	0.810527	1.102537e-50	-8.615850e-47
Msa0535110	Msa0967380	0.804242	2.373599e-49	-8.615850e-47
Msa0535110	Msa1005870	0.838187	3.336666e-57	-8.615850e-47
Msa0535110	Msa1050910	0.805152	1.532454e-49	-8.615850e-47
Msa0535110	Msa1074220	0.806836	6.779673e-50	-8.615850e-47
Msa0535110	Msa1078170	0.810415	1.165897e-50	-8.615850e-47
Msa0535110	Msa1079230	0.805420	1.346525e-49	-8.615850e-47
Msa0535110	Msa1092010	0.831550	1.566683e-55	-8.615850e-47
Msa0535110	Msa1127590	0.815539	8.779866e-52	-8.615850e-47
Msa0535110	Msa1140210	0.800053	1.726468e-48	-8.615850e-47
Msa0535110	Msa1145580	0.806579	7.681314e-50	-8.615850e-47
Msa0535110	Msa1277080	0.810825	9.507307e-51	-8.615850e-47
Msa0535110	Msa1317950	0.823934	1.059946e-53	-8.615850e-47
Msa0535110	Msa1317960	0.822626	2.141913e-53	-8.615850e-47
Msa0535110	Msa1330420	0.811464	6.911864e-51	-8.615850e-47
Msa0535110	Msa1335160	0.805666	1.195580e-49	-8.615850e-47
Msa0535110	Msa1373100	0.805532	1.275698e-49	-8.615850e-47
Msa0535110	Msa1422950	0.805606	1.230956e-49	-8.615850e-47
Msa0535110	Msa1440880	0.806871	6.665676e-50	-8.615850e-47
Msa0535110	Msa1446810	0.803793	2.942438e-49	-8.615850e-47
Msa0535110	Msa1451160	0.817393	3.374665e-52	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535110	MtrunA17_Chr4g0008911	96.040	101	4	0	1	101	1	101	3.04e-65	205
Msa0535110	MtrunA17_Chr8g0349041	61.386	101	39	0	1	101	1	101	2.52e-37	134
Msa0535110	MtrunA17_Chr4g0032361	59.615	104	41	1	1	103	1	104	3.17e-35	128
Msa0535110	MtrunA17_Chr7g0247441	57.426	101	43	0	1	101	1	101	3.14e-32	120
Msa0535110	MtrunA17_Chr8g0386761	54.369	103	45	2	1	101	1	103	1.36e-25	102
Msa0535110	MtrunA17_Chr4g0054861	67.188	64	21	0	39	102	43	106	3.14e-22	92.4
Msa0535110	MtrunA17_Chr5g0448561	66.667	63	20	1	40	101	68	130	1.11e-19	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535110	AT3G54030.1	66.990	103	29	2	1	102	1	99	5.01e-41	144
Msa0535110	AT4G00710.1	63.366	101	36	1	1	101	1	100	4.50e-35	128
Msa0535110	AT4G00710.2	63.366	101	36	1	1	101	1	100	4.50e-35	128
Msa0535110	AT5G59010.1	58.416	101	38	1	1	101	1	97	4.42e-33	122
Msa0535110	AT1G01740.5	56.436	101	41	1	1	101	1	98	8.40e-29	111
Msa0535110	AT1G01740.2	56.436	101	41	1	1	101	1	98	9.00e-29	111
Msa0535110	AT1G01740.1	56.436	101	41	1	1	101	1	98	9.00e-29	111
Msa0535110	AT1G63500.1	54.902	102	38	2	5	101	3	101	4.56e-27	106
Msa0535110	AT5G41260.1	61.905	84	29	2	18	101	21	101	7.75e-27	105
Msa0535110	AT3G09240.3	54.545	77	35	0	25	101	25	101	3.20e-23	95.9
Msa0535110	AT3G09240.1	55.405	74	33	0	28	101	13	86	1.26e-22	94.0
Msa0535110	AT4G35230.1	67.742	62	20	0	39	100	56	117	1.30e-21	91.3
Msa0535110	AT5G46570.1	50.000	84	41	1	18	101	16	98	2.11e-20	87.8
Msa0535110	AT5G01060.2	50.000	84	36	2	20	102	28	106	1.98e-19	84.3
Msa0535110	AT5G01060.1	59.677	62	25	0	41	102	45	106	4.11e-19	84.0
Msa0535110	AT2G17090.1	44.872	78	36	2	24	101	22	92	3.44e-13	67.0

Find 67 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGCTTCTTATTCTTCTTCA+TGG	0.240766	4_1:-10990584	Msa0535110:exon
AATTTACTTGTTTATCTATC+TGG	0.257772	4_1:+10990797	None:intergenic
TATGTTTGTTTCAACATAAA+TGG	0.259583	4_1:+10990694	None:intergenic
CAATATGTTAAATTGTTATA+AGG	0.263014	4_1:+10990771	None:intergenic
TTCCCTTTGTAAACAACATT+TGG	0.290071	4_1:+10990125	None:intergenic
TCCAACGCTTTGTGCTTTCC+TGG	0.325826	4_1:+10989044	None:intergenic
TGCTTCTTATTCTTCTTCAT+GGG	0.337191	4_1:-10990583	Msa0535110:exon
TTCATTGTTGTGAGCCCATT+TGG	0.362792	4_1:+10990646	None:intergenic
GGGTACTACACTGGTTTCAT+TGG	0.367269	4_1:+10989309	None:intergenic
CAACATAAATGGATAAAAGT+TGG	0.373077	4_1:+10990705	None:intergenic
AACAATGAATTGTCGAGAAT+CGG	0.387156	4_1:+10990049	None:intergenic
AGATATTTCCAGAGTGTTGA+AGG	0.396911	4_1:-10989349	Msa0535110:intron
GCTCTAAATTCTCTTTCTGT+TGG	0.402140	4_1:-10990552	Msa0535110:CDS
AACATAAATGGATAAAAGTT+GGG	0.410881	4_1:+10990706	None:intergenic
AAGTGTACTCATAGACCAAA+TGG	0.411470	4_1:-10990661	Msa0535110:five_prime_UTR
GTTCTTGAATCCTCTGATCA+AGG	0.424808	4_1:-10990505	Msa0535110:intron
GGTTTAGATGGTGCTGAAGG+TGG	0.428556	4_1:-10989094	Msa0535110:intron
CTCCAAATGTTGTTTACAAA+GGG	0.429511	4_1:-10990127	Msa0535110:CDS
GAATTGAAGGCTGCCACAAA+TGG	0.442552	4_1:-10990191	Msa0535110:CDS
TTGGCCAGATGACTCTCCCT+TGG	0.449597	4_1:-10989285	Msa0535110:CDS
ATCTCCAAGGGAGAGTCATC+TGG	0.450323	4_1:+10989281	None:intergenic
ACAATGAATTGTCGAGAATC+GGG	0.460524	4_1:+10990050	None:intergenic
AGGTTAGACGGTGGGTTTGA+CGG	0.463338	4_1:-10988988	None:intergenic
ATAAAAGTTGGGAATGCAAA+AGG	0.478238	4_1:+10990717	None:intergenic
GTACAGTTTGGAAGAATTGA+AGG	0.482014	4_1:-10990204	Msa0535110:CDS
AAGAAGCAACTGAAGGTTGA+AGG	0.487708	4_1:+10990598	None:intergenic
TTAGATGGTGCTGAAGGTGG+AGG	0.493003	4_1:-10989091	Msa0535110:intron
GCTCCAAATGTTGTTTACAA+AGG	0.496749	4_1:-10990128	Msa0535110:CDS
GAAACCAGTGTAGTACCCTT+TGG	0.502090	4_1:-10989304	Msa0535110:CDS
AACGTTTCAACAAGTTCGCT+TGG	0.507748	4_1:-10990073	Msa0535110:CDS
TTCAGAGGAGAATCCATTTG+TGG	0.521059	4_1:+10990178	None:intergenic
GAACTTGTTGAAACGTTTGA+CGG	0.521430	4_1:+10990079	None:intergenic
TACAAAGGGAAACTTGAGAA+TGG	0.522897	4_1:-10990113	Msa0535110:CDS
TTGGGTTTAGATGGTGCTGA+AGG	0.528280	4_1:-10989097	Msa0535110:intron
GAAAACATTGTTTCTGAGCA+TGG	0.531837	4_1:-10990158	Msa0535110:CDS
GGGAGAGTCATCTGGCCAAA+GGG	0.533226	4_1:+10989289	None:intergenic
GCTTCTTATTCTTCTTCATG+GGG	0.537780	4_1:-10990582	Msa0535110:exon
TGTTGAAGGTCTGCTTCTCA+AGG	0.539151	4_1:-10989335	Msa0535110:CDS
GATGGTGCTGAAGGTGGAGG+AGG	0.542086	4_1:-10989088	Msa0535110:CDS
AAACTGTACTCATGAAAACT+AGG	0.548981	4_1:+10990218	None:intergenic
TTCTTATTCTTCTTCATGGG+GGG	0.554969	4_1:-10990580	Msa0535110:exon
TTTATTGTTGTAGAAAATGG+TGG	0.557391	4_1:-10990263	Msa0535110:intron
GGAAAGCACAAAGCGTTGGA+TGG	0.560755	4_1:-10989041	Msa0535110:CDS
GCCAGGAAAGCACAAAGCGT+TGG	0.561217	4_1:-10989045	Msa0535110:CDS
TCAGAGGATTCAAGAACAGA+AGG	0.565052	4_1:+10990511	None:intergenic
CCTGATGATGAACATGATGC+AGG	0.566513	4_1:+10989238	None:intergenic
GAGGATGGCATGGTGGTGAT+CGG	0.569443	4_1:-10989019	Msa0535110:CDS
GCAAAAGGTTGCTAAGGTGA+TGG	0.570792	4_1:+10990732	None:intergenic
TCAGAAGGAGGTTAGACGGT+GGG	0.571669	4_1:-10988996	Msa0535110:CDS
GGGAATGCAAAAGGTTGCTA+AGG	0.576660	4_1:+10990726	None:intergenic
CATGGTGGTGATCGGTCAGA+AGG	0.578614	4_1:-10989011	Msa0535110:CDS
AGTGTACTCATAGACCAAAT+GGG	0.579301	4_1:-10990660	Msa0535110:five_prime_UTR
AAGCACAAAGCGTTGGATGG+AGG	0.591685	4_1:-10989038	Msa0535110:CDS
CTTCTTATTCTTCTTCATGG+GGG	0.593459	4_1:-10990581	Msa0535110:exon
GATTGTAAACATAATCTCCA+AGG	0.594987	4_1:+10989268	None:intergenic
ACAAAGCGTTGGATGGAGGA+TGG	0.598893	4_1:-10989034	Msa0535110:CDS
AGGGAGAGTCATCTGGCCAA+AGG	0.603083	4_1:+10989288	None:intergenic
GAAGAATAAGAAGCAACTGA+AGG	0.608844	4_1:+10990591	None:intergenic
GCGTTGGATGGAGGATGGCA+TGG	0.612887	4_1:-10989029	Msa0535110:CDS
ATTGTAAACATAATCTCCAA+GGG	0.619287	4_1:+10989269	None:intergenic
CTGGCCAAAGGGTACTACAC+TGG	0.642599	4_1:+10989300	None:intergenic
AAAACACAAACCTTGATCAG+AGG	0.643791	4_1:+10990495	None:intergenic
TCGGTCAGAAGGAGGTTAGA+CGG	0.644419	4_1:-10989000	Msa0535110:CDS
GGTGGTGATCGGTCAGAAGG+AGG	0.650927	4_1:-10989008	Msa0535110:CDS
CAGAAGGATTGAGATGACAG+TGG	0.684134	4_1:+10990527	None:intergenic
TTGGATGGAGGATGGCATGG+TGG	0.690791	4_1:-10989026	Msa0535110:CDS
GTCAGAAGGAGGTTAGACGG+TGG	0.703176	4_1:-10988997	Msa0535110:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TCATTTTTCTAAATTATTAT+CGG	-	chr4_1:10989459-10989478	Msa0535110:intron	10.0%
!!!	TCATTTTTCTAAATTATTAT+CGG	-	chr4_1:10989459-10989478	Msa0535110:intron	10.0%
!!	CAATATGTTAAATTGTTATA+AGG	+	chr4_1:10989057-10989076	None:intergenic	15.0%
!!	CAATATGTTAAATTGTTATA+AGG	+	chr4_1:10989057-10989076	None:intergenic	15.0%
!!	AATTTACTTGTTTATCTATC+TGG	+	chr4_1:10989031-10989050	None:intergenic	20.0%
!!	AACATAAATGGATAAAAGTT+GGG	+	chr4_1:10989122-10989141	None:intergenic	20.0%
!!	TATGTTTGTTTCAACATAAA+TGG	+	chr4_1:10989134-10989153	None:intergenic	20.0%
!!	AATTATTATCGGTATTAATG+TGG	-	chr4_1:10989470-10989489	Msa0535110:intron	20.0%
!!!	TAACATTTTAAACCACAAAA+CGG	+	chr4_1:10989540-10989559	None:intergenic	20.0%
!!	ATCTTTATTGTTGTAGAAAA+TGG	-	chr4_1:10989559-10989578	Msa0535110:intron	20.0%
!!	ATATAAAATCTTGCATGAAA+TGG	+	chr4_1:10989837-10989856	None:intergenic	20.0%
!!	GTATCTTAAAATTATTTGCT+TGG	+	chr4_1:10990346-10990365	None:intergenic	20.0%
!!	ATTTAATTAACTTTGACACA+TGG	-	chr4_1:10990623-10990642	Msa0535110:five_prime_UTR	20.0%
!!	AATTTACTTGTTTATCTATC+TGG	+	chr4_1:10989031-10989050	None:intergenic	20.0%
!!	AACATAAATGGATAAAAGTT+GGG	+	chr4_1:10989122-10989141	None:intergenic	20.0%
!!	TATGTTTGTTTCAACATAAA+TGG	+	chr4_1:10989134-10989153	None:intergenic	20.0%
!!	AATTATTATCGGTATTAATG+TGG	-	chr4_1:10989470-10989489	Msa0535110:intron	20.0%
!!!	TAACATTTTAAACCACAAAA+CGG	+	chr4_1:10989540-10989559	None:intergenic	20.0%
!!	ATCTTTATTGTTGTAGAAAA+TGG	-	chr4_1:10989559-10989578	Msa0535110:intron	20.0%
!!	ATATAAAATCTTGCATGAAA+TGG	+	chr4_1:10989837-10989856	None:intergenic	20.0%
!!	GTATCTTAAAATTATTTGCT+TGG	+	chr4_1:10990346-10990365	None:intergenic	20.0%
!!	ATTTAATTAACTTTGACACA+TGG	-	chr4_1:10990623-10990642	Msa0535110:five_prime_UTR	20.0%
!	CAACATAAATGGATAAAAGT+TGG	+	chr4_1:10989123-10989142	None:intergenic	25.0%
!	TTTATTGTTGTAGAAAATGG+TGG	-	chr4_1:10989562-10989581	Msa0535110:intron	25.0%
!!	TCATGCAAGATTTTATATTG+TGG	-	chr4_1:10989839-10989858	Msa0535110:intron	25.0%
!	TCCAAATATTCTTTCAATCA+TGG	-	chr4_1:10990163-10990182	Msa0535110:CDS	25.0%
!	CCAAATATTCTTTCAATCAT+GGG	-	chr4_1:10990164-10990183	Msa0535110:CDS	25.0%
!!!	TTTGTACTGATAGTTTTTCA+GGG	+	chr4_1:10990193-10990212	None:intergenic	25.0%
!!!	ATTTGTACTGATAGTTTTTC+AGG	+	chr4_1:10990194-10990213	None:intergenic	25.0%
!	GAAAAACTATCAGTACAAAT+AGG	-	chr4_1:10990194-10990213	Msa0535110:CDS	25.0%
!!!	GCAAATAATTTTAAGATACC+AGG	-	chr4_1:10990347-10990366	Msa0535110:intron	25.0%
!	ATTGTAAACATAATCTCCAA+GGG	+	chr4_1:10990559-10990578	None:intergenic	25.0%
!	CAACATAAATGGATAAAAGT+TGG	+	chr4_1:10989123-10989142	None:intergenic	25.0%
!	TTTATTGTTGTAGAAAATGG+TGG	-	chr4_1:10989562-10989581	Msa0535110:intron	25.0%
!!	TCATGCAAGATTTTATATTG+TGG	-	chr4_1:10989839-10989858	Msa0535110:intron	25.0%
!	TCCAAATATTCTTTCAATCA+TGG	-	chr4_1:10990163-10990182	Msa0535110:CDS	25.0%
!	CCAAATATTCTTTCAATCAT+GGG	-	chr4_1:10990164-10990183	Msa0535110:CDS	25.0%
!!!	TTTGTACTGATAGTTTTTCA+GGG	+	chr4_1:10990193-10990212	None:intergenic	25.0%
!!!	ATTTGTACTGATAGTTTTTC+AGG	+	chr4_1:10990194-10990213	None:intergenic	25.0%
!	GAAAAACTATCAGTACAAAT+AGG	-	chr4_1:10990194-10990213	Msa0535110:CDS	25.0%
!!!	GCAAATAATTTTAAGATACC+AGG	-	chr4_1:10990347-10990366	Msa0535110:intron	25.0%
!	ATTGTAAACATAATCTCCAA+GGG	+	chr4_1:10990559-10990578	None:intergenic	25.0%
	ATAAAAGTTGGGAATGCAAA+AGG	+	chr4_1:10989111-10989130	None:intergenic	30.0%
	TTGCTTCTTATTCTTCTTCA+TGG	-	chr4_1:10989241-10989260	Msa0535110:intron	30.0%
	TGCTTCTTATTCTTCTTCAT+GGG	-	chr4_1:10989242-10989261	Msa0535110:intron	30.0%
	TTCAATGCAATCACATATGT+CGG	+	chr4_1:10989434-10989453	None:intergenic	30.0%
	AAACTGTACTCATGAAAACT+AGG	+	chr4_1:10989610-10989629	None:intergenic	30.0%
!	TAGTTTTCATGAGTACAGTT+TGG	-	chr4_1:10989609-10989628	Msa0535110:intron	30.0%
!	CTCCAAATGTTGTTTACAAA+GGG	-	chr4_1:10989698-10989717	Msa0535110:intron	30.0%
	TTCCCTTTGTAAACAACATT+TGG	+	chr4_1:10989703-10989722	None:intergenic	30.0%
	AACAATGAATTGTCGAGAAT+CGG	+	chr4_1:10989779-10989798	None:intergenic	30.0%
	TATATGCAAGAAAAGGAAGA+TGG	+	chr4_1:10989988-10990007	None:intergenic	30.0%
	ATGTGGATATATGCAAGAAA+AGG	+	chr4_1:10989995-10990014	None:intergenic	30.0%
	CCCATGATTGAAAGAATATT+TGG	+	chr4_1:10990167-10990186	None:intergenic	30.0%
!!	TTGAAGATCTAAGAAGTGTT+AGG	+	chr4_1:10990397-10990416	None:intergenic	30.0%
	GATTGTAAACATAATCTCCA+AGG	+	chr4_1:10990560-10990579	None:intergenic	30.0%
!	TTAACTTTGACACATGGTTT+TGG	-	chr4_1:10990629-10990648	Msa0535110:five_prime_UTR	30.0%
	ATAAAAGTTGGGAATGCAAA+AGG	+	chr4_1:10989111-10989130	None:intergenic	30.0%
	TTGCTTCTTATTCTTCTTCA+TGG	-	chr4_1:10989241-10989260	Msa0535110:intron	30.0%
	TGCTTCTTATTCTTCTTCAT+GGG	-	chr4_1:10989242-10989261	Msa0535110:intron	30.0%
	TTCAATGCAATCACATATGT+CGG	+	chr4_1:10989434-10989453	None:intergenic	30.0%
	AAACTGTACTCATGAAAACT+AGG	+	chr4_1:10989610-10989629	None:intergenic	30.0%
!	TAGTTTTCATGAGTACAGTT+TGG	-	chr4_1:10989609-10989628	Msa0535110:intron	30.0%
!	CTCCAAATGTTGTTTACAAA+GGG	-	chr4_1:10989698-10989717	Msa0535110:intron	30.0%
	TTCCCTTTGTAAACAACATT+TGG	+	chr4_1:10989703-10989722	None:intergenic	30.0%
	AACAATGAATTGTCGAGAAT+CGG	+	chr4_1:10989779-10989798	None:intergenic	30.0%
	TATATGCAAGAAAAGGAAGA+TGG	+	chr4_1:10989988-10990007	None:intergenic	30.0%
	ATGTGGATATATGCAAGAAA+AGG	+	chr4_1:10989995-10990014	None:intergenic	30.0%
	CCCATGATTGAAAGAATATT+TGG	+	chr4_1:10990167-10990186	None:intergenic	30.0%
!!	TTGAAGATCTAAGAAGTGTT+AGG	+	chr4_1:10990397-10990416	None:intergenic	30.0%
	GATTGTAAACATAATCTCCA+AGG	+	chr4_1:10990560-10990579	None:intergenic	30.0%
!	TTAACTTTGACACATGGTTT+TGG	-	chr4_1:10990629-10990648	Msa0535110:five_prime_UTR	30.0%
	AAGTGTACTCATAGACCAAA+TGG	-	chr4_1:10989164-10989183	Msa0535110:intron	35.0%
	AGTGTACTCATAGACCAAAT+GGG	-	chr4_1:10989165-10989184	Msa0535110:intron	35.0%
	GAAGAATAAGAAGCAACTGA+AGG	+	chr4_1:10989237-10989256	None:intergenic	35.0%
	GCTTCTTATTCTTCTTCATG+GGG	-	chr4_1:10989243-10989262	Msa0535110:intron	35.0%
	CTTCTTATTCTTCTTCATGG+GGG	-	chr4_1:10989244-10989263	Msa0535110:intron	35.0%
	TTCTTATTCTTCTTCATGGG+GGG	-	chr4_1:10989245-10989264	Msa0535110:intron	35.0%
!	GCTCTAAATTCTCTTTCTGT+TGG	-	chr4_1:10989273-10989292	Msa0535110:CDS	35.0%
	AAAACACAAACCTTGATCAG+AGG	+	chr4_1:10989333-10989352	None:intergenic	35.0%
	ATGCTTTCGATCAGAATTGT+CGG	+	chr4_1:10989396-10989415	None:intergenic	35.0%
	GCAAGAGTGAAAAAAACTTG+TGG	-	chr4_1:10989584-10989603	Msa0535110:intron	35.0%
	GTACAGTTTGGAAGAATTGA+AGG	-	chr4_1:10989621-10989640	Msa0535110:intron	35.0%
!	CTCAGAAACAATGTTTTCAG+AGG	+	chr4_1:10989665-10989684	None:intergenic	35.0%
!!	GAAAACATTGTTTCTGAGCA+TGG	-	chr4_1:10989667-10989686	Msa0535110:intron	35.0%
!	GCTCCAAATGTTGTTTACAA+AGG	-	chr4_1:10989697-10989716	Msa0535110:intron	35.0%
	TACAAAGGGAAACTTGAGAA+TGG	-	chr4_1:10989712-10989731	Msa0535110:intron	35.0%
!!	GAACTTGTTGAAACGTTTGA+CGG	+	chr4_1:10989749-10989768	None:intergenic	35.0%
	ACAATGAATTGTCGAGAATC+GGG	+	chr4_1:10989778-10989797	None:intergenic	35.0%
	GAACAACAATGAAGTGAAAG+TGG	+	chr4_1:10989812-10989831	None:intergenic	35.0%
	TGTGCATATTGCAAAATACC+GGG	+	chr4_1:10990023-10990042	None:intergenic	35.0%
	CTGTGCATATTGCAAAATAC+CGG	+	chr4_1:10990024-10990043	None:intergenic	35.0%
	TTGCAATATGCACAGAAATC+AGG	-	chr4_1:10990029-10990048	Msa0535110:intron	35.0%
	TAGATCTAGCCAATGAATTG+AGG	+	chr4_1:10990118-10990137	None:intergenic	35.0%
	AATATTTGGACACTATGCGA+GGG	+	chr4_1:10990153-10990172	None:intergenic	35.0%
	AAGTGTGGGTCAGATTATAT+GGG	+	chr4_1:10990280-10990299	None:intergenic	35.0%
	AAAGTGTGGGTCAGATTATA+TGG	+	chr4_1:10990281-10990300	None:intergenic	35.0%
	ATATAATCTGACCCACACTT+TGG	-	chr4_1:10990280-10990299	Msa0535110:intron	35.0%
	GGTTCTTGGAATTTAAATCC+TGG	+	chr4_1:10990368-10990387	None:intergenic	35.0%
	TGGAAATATCTAGGAAGATG+GGG	+	chr4_1:10990467-10990486	None:intergenic	35.0%
	CTGGAAATATCTAGGAAGAT+GGG	+	chr4_1:10990468-10990487	None:intergenic	35.0%
	TCTGGAAATATCTAGGAAGA+TGG	+	chr4_1:10990469-10990488	None:intergenic	35.0%
!	TCAACACTCTGGAAATATCT+AGG	+	chr4_1:10990476-10990495	None:intergenic	35.0%
!!	AGATATTTCCAGAGTGTTGA+AGG	-	chr4_1:10990476-10990495	Msa0535110:intron	35.0%
!	TGTCTTTTGTTGAACAAAGC+TGG	-	chr4_1:10990700-10990719	Msa0535110:five_prime_UTR	35.0%
	AAGTGTACTCATAGACCAAA+TGG	-	chr4_1:10989164-10989183	Msa0535110:intron	35.0%
	AGTGTACTCATAGACCAAAT+GGG	-	chr4_1:10989165-10989184	Msa0535110:intron	35.0%
	GAAGAATAAGAAGCAACTGA+AGG	+	chr4_1:10989237-10989256	None:intergenic	35.0%
	GCTTCTTATTCTTCTTCATG+GGG	-	chr4_1:10989243-10989262	Msa0535110:intron	35.0%
	CTTCTTATTCTTCTTCATGG+GGG	-	chr4_1:10989244-10989263	Msa0535110:intron	35.0%
	TTCTTATTCTTCTTCATGGG+GGG	-	chr4_1:10989245-10989264	Msa0535110:intron	35.0%
!	GCTCTAAATTCTCTTTCTGT+TGG	-	chr4_1:10989273-10989292	Msa0535110:CDS	35.0%
	AAAACACAAACCTTGATCAG+AGG	+	chr4_1:10989333-10989352	None:intergenic	35.0%
	ATGCTTTCGATCAGAATTGT+CGG	+	chr4_1:10989396-10989415	None:intergenic	35.0%
	GCAAGAGTGAAAAAAACTTG+TGG	-	chr4_1:10989584-10989603	Msa0535110:intron	35.0%
	GTACAGTTTGGAAGAATTGA+AGG	-	chr4_1:10989621-10989640	Msa0535110:intron	35.0%
!	CTCAGAAACAATGTTTTCAG+AGG	+	chr4_1:10989665-10989684	None:intergenic	35.0%
!!	GAAAACATTGTTTCTGAGCA+TGG	-	chr4_1:10989667-10989686	Msa0535110:intron	35.0%
!	GCTCCAAATGTTGTTTACAA+AGG	-	chr4_1:10989697-10989716	Msa0535110:intron	35.0%
	TACAAAGGGAAACTTGAGAA+TGG	-	chr4_1:10989712-10989731	Msa0535110:intron	35.0%
!!	GAACTTGTTGAAACGTTTGA+CGG	+	chr4_1:10989749-10989768	None:intergenic	35.0%
	ACAATGAATTGTCGAGAATC+GGG	+	chr4_1:10989778-10989797	None:intergenic	35.0%
	GAACAACAATGAAGTGAAAG+TGG	+	chr4_1:10989812-10989831	None:intergenic	35.0%
	TGTGCATATTGCAAAATACC+GGG	+	chr4_1:10990023-10990042	None:intergenic	35.0%
	CTGTGCATATTGCAAAATAC+CGG	+	chr4_1:10990024-10990043	None:intergenic	35.0%
	TTGCAATATGCACAGAAATC+AGG	-	chr4_1:10990029-10990048	Msa0535110:intron	35.0%
	TAGATCTAGCCAATGAATTG+AGG	+	chr4_1:10990118-10990137	None:intergenic	35.0%
	AATATTTGGACACTATGCGA+GGG	+	chr4_1:10990153-10990172	None:intergenic	35.0%
	AAGTGTGGGTCAGATTATAT+GGG	+	chr4_1:10990280-10990299	None:intergenic	35.0%
	AAAGTGTGGGTCAGATTATA+TGG	+	chr4_1:10990281-10990300	None:intergenic	35.0%
	ATATAATCTGACCCACACTT+TGG	-	chr4_1:10990280-10990299	Msa0535110:intron	35.0%
	GGTTCTTGGAATTTAAATCC+TGG	+	chr4_1:10990368-10990387	None:intergenic	35.0%
	TGGAAATATCTAGGAAGATG+GGG	+	chr4_1:10990467-10990486	None:intergenic	35.0%
	CTGGAAATATCTAGGAAGAT+GGG	+	chr4_1:10990468-10990487	None:intergenic	35.0%
	TCTGGAAATATCTAGGAAGA+TGG	+	chr4_1:10990469-10990488	None:intergenic	35.0%
!	TCAACACTCTGGAAATATCT+AGG	+	chr4_1:10990476-10990495	None:intergenic	35.0%
!!	AGATATTTCCAGAGTGTTGA+AGG	-	chr4_1:10990476-10990495	Msa0535110:intron	35.0%
!	TGTCTTTTGTTGAACAAAGC+TGG	-	chr4_1:10990700-10990719	Msa0535110:five_prime_UTR	35.0%
	TTCATTGTTGTGAGCCCATT+TGG	+	chr4_1:10989182-10989201	None:intergenic	40.0%
	AAGAAGCAACTGAAGGTTGA+AGG	+	chr4_1:10989230-10989249	None:intergenic	40.0%
	TCAGAGGATTCAAGAACAGA+AGG	+	chr4_1:10989317-10989336	None:intergenic	40.0%
	GTTCTTGAATCCTCTGATCA+AGG	-	chr4_1:10989320-10989339	Msa0535110:CDS	40.0%
!	ATTCTGATCGAAAGCATGTC+TGG	-	chr4_1:10989399-10989418	Msa0535110:intron	40.0%
	TTCAGAGGAGAATCCATTTG+TGG	+	chr4_1:10989650-10989669	None:intergenic	40.0%
	AACGTTTCAACAAGTTCGCT+TGG	-	chr4_1:10989752-10989771	Msa0535110:intron	40.0%
	CATATATCCACATGATGACC+CGG	-	chr4_1:10990002-10990021	Msa0535110:intron	40.0%
	TACCCTGTACCTCAATTCAT+TGG	-	chr4_1:10990106-10990125	Msa0535110:CDS	40.0%
	AGCCAATGAATTGAGGTACA+GGG	+	chr4_1:10990111-10990130	None:intergenic	40.0%
	TAGCCAATGAATTGAGGTAC+AGG	+	chr4_1:10990112-10990131	None:intergenic	40.0%
	GAATATTTGGACACTATGCG+AGG	+	chr4_1:10990154-10990173	None:intergenic	40.0%
	TTTGCCATAGCAAGTAGTGT+GGG	+	chr4_1:10990224-10990243	None:intergenic	40.0%
	ATTTGCCATAGCAAGTAGTG+TGG	+	chr4_1:10990225-10990244	None:intergenic	40.0%
!!	CTAAGAAGTGTTAGGACAGT+TGG	+	chr4_1:10990389-10990408	None:intergenic	40.0%
!	TTGAACAAAGCTGGCTGTTT+TGG	-	chr4_1:10990709-10990728	Msa0535110:five_prime_UTR	40.0%
!!	TGAACAAAGCTGGCTGTTTT+GGG	-	chr4_1:10990710-10990729	Msa0535110:five_prime_UTR	40.0%
	TTCATTGTTGTGAGCCCATT+TGG	+	chr4_1:10989182-10989201	None:intergenic	40.0%
	AAGAAGCAACTGAAGGTTGA+AGG	+	chr4_1:10989230-10989249	None:intergenic	40.0%
	TCAGAGGATTCAAGAACAGA+AGG	+	chr4_1:10989317-10989336	None:intergenic	40.0%
	GTTCTTGAATCCTCTGATCA+AGG	-	chr4_1:10989320-10989339	Msa0535110:CDS	40.0%
!	ATTCTGATCGAAAGCATGTC+TGG	-	chr4_1:10989399-10989418	Msa0535110:intron	40.0%
	TTCAGAGGAGAATCCATTTG+TGG	+	chr4_1:10989650-10989669	None:intergenic	40.0%
	AACGTTTCAACAAGTTCGCT+TGG	-	chr4_1:10989752-10989771	Msa0535110:intron	40.0%
	CATATATCCACATGATGACC+CGG	-	chr4_1:10990002-10990021	Msa0535110:intron	40.0%
	TACCCTGTACCTCAATTCAT+TGG	-	chr4_1:10990106-10990125	Msa0535110:CDS	40.0%
	AGCCAATGAATTGAGGTACA+GGG	+	chr4_1:10990111-10990130	None:intergenic	40.0%
	TAGCCAATGAATTGAGGTAC+AGG	+	chr4_1:10990112-10990131	None:intergenic	40.0%
	GAATATTTGGACACTATGCG+AGG	+	chr4_1:10990154-10990173	None:intergenic	40.0%
	TTTGCCATAGCAAGTAGTGT+GGG	+	chr4_1:10990224-10990243	None:intergenic	40.0%
	ATTTGCCATAGCAAGTAGTG+TGG	+	chr4_1:10990225-10990244	None:intergenic	40.0%
!!	CTAAGAAGTGTTAGGACAGT+TGG	+	chr4_1:10990389-10990408	None:intergenic	40.0%
!	TTGAACAAAGCTGGCTGTTT+TGG	-	chr4_1:10990709-10990728	Msa0535110:five_prime_UTR	40.0%
!!	TGAACAAAGCTGGCTGTTTT+GGG	-	chr4_1:10990710-10990729	Msa0535110:five_prime_UTR	40.0%
	GCAAAAGGTTGCTAAGGTGA+TGG	+	chr4_1:10989096-10989115	None:intergenic	45.0%
	GGGAATGCAAAAGGTTGCTA+AGG	+	chr4_1:10989102-10989121	None:intergenic	45.0%
	CAGAAGGATTGAGATGACAG+TGG	+	chr4_1:10989301-10989320	None:intergenic	45.0%
!!	CAGAATTGTCGGTGCTACAA+CGG	+	chr4_1:10989385-10989404	None:intergenic	45.0%
	GCAATCACATATGTCGGTGT+CGG	+	chr4_1:10989428-10989447	None:intergenic	45.0%
	GAATTGAAGGCTGCCACAAA+TGG	-	chr4_1:10989634-10989653	Msa0535110:intron	45.0%
	CAAAATACCGGGTCATCATG+TGG	+	chr4_1:10990012-10990031	None:intergenic	45.0%
!	AGGGTACTTGTGGAAAGGAA+AGG	+	chr4_1:10990092-10990111	None:intergenic	45.0%
!	ATTGAGGTACAGGGTACTTG+TGG	+	chr4_1:10990102-10990121	None:intergenic	45.0%
!	TGTTCCCACACTACTTGCTA+TGG	-	chr4_1:10990217-10990236	Msa0535110:CDS	45.0%
!	ATGGGTTGTCGCAGGAATAT+TGG	+	chr4_1:10990262-10990281	None:intergenic	45.0%
!	CAGATTATATGGGTTGTCGC+AGG	+	chr4_1:10990270-10990289	None:intergenic	45.0%
	TCAAACCAACGCCAAAGTGT+GGG	+	chr4_1:10990294-10990313	None:intergenic	45.0%
	TTCAAACCAACGCCAAAGTG+TGG	+	chr4_1:10990295-10990314	None:intergenic	45.0%
!!	TTTGGCGTTGGTTTGAAGCT+GGG	-	chr4_1:10990298-10990317	Msa0535110:intron	45.0%
!	GTGTTAGGACAGTTGGTTCT+TGG	+	chr4_1:10990382-10990401	None:intergenic	45.0%
	GGTATCCTCTCTCTTGGTAA+GGG	+	chr4_1:10990446-10990465	None:intergenic	45.0%
	TGTTGAAGGTCTGCTTCTCA+AGG	-	chr4_1:10990490-10990509	Msa0535110:intron	45.0%
!!	GGGTACTACACTGGTTTCAT+TGG	+	chr4_1:10990519-10990538	None:intergenic	45.0%
	GAAACCAGTGTAGTACCCTT+TGG	-	chr4_1:10990521-10990540	Msa0535110:CDS	45.0%
!	CCTGATGATGAACATGATGC+AGG	+	chr4_1:10990590-10990609	None:intergenic	45.0%
	CCTGCATCATGTTCATCATC+AGG	-	chr4_1:10990587-10990606	Msa0535110:exon	45.0%
!!!	CTGGCTGTTTTGGGTTTAGA+TGG	-	chr4_1:10990719-10990738	Msa0535110:five_prime_UTR	45.0%
!	TTGGGTTTAGATGGTGCTGA+AGG	-	chr4_1:10990728-10990747	Msa0535110:five_prime_UTR	45.0%
!	ATCGTTTTGTAAGCAACGCC+AGG	-	chr4_1:10990763-10990782	Msa0535110:five_prime_UTR	45.0%
	GCAAAAGGTTGCTAAGGTGA+TGG	+	chr4_1:10989096-10989115	None:intergenic	45.0%
	GGGAATGCAAAAGGTTGCTA+AGG	+	chr4_1:10989102-10989121	None:intergenic	45.0%
	CAGAAGGATTGAGATGACAG+TGG	+	chr4_1:10989301-10989320	None:intergenic	45.0%
!!	CAGAATTGTCGGTGCTACAA+CGG	+	chr4_1:10989385-10989404	None:intergenic	45.0%
	GCAATCACATATGTCGGTGT+CGG	+	chr4_1:10989428-10989447	None:intergenic	45.0%
	GAATTGAAGGCTGCCACAAA+TGG	-	chr4_1:10989634-10989653	Msa0535110:intron	45.0%
	CAAAATACCGGGTCATCATG+TGG	+	chr4_1:10990012-10990031	None:intergenic	45.0%
!	AGGGTACTTGTGGAAAGGAA+AGG	+	chr4_1:10990092-10990111	None:intergenic	45.0%
!	ATTGAGGTACAGGGTACTTG+TGG	+	chr4_1:10990102-10990121	None:intergenic	45.0%
!	TGTTCCCACACTACTTGCTA+TGG	-	chr4_1:10990217-10990236	Msa0535110:CDS	45.0%
!	ATGGGTTGTCGCAGGAATAT+TGG	+	chr4_1:10990262-10990281	None:intergenic	45.0%
!	CAGATTATATGGGTTGTCGC+AGG	+	chr4_1:10990270-10990289	None:intergenic	45.0%
	TCAAACCAACGCCAAAGTGT+GGG	+	chr4_1:10990294-10990313	None:intergenic	45.0%
	TTCAAACCAACGCCAAAGTG+TGG	+	chr4_1:10990295-10990314	None:intergenic	45.0%
!!	TTTGGCGTTGGTTTGAAGCT+GGG	-	chr4_1:10990298-10990317	Msa0535110:intron	45.0%
!	GTGTTAGGACAGTTGGTTCT+TGG	+	chr4_1:10990382-10990401	None:intergenic	45.0%
	GGTATCCTCTCTCTTGGTAA+GGG	+	chr4_1:10990446-10990465	None:intergenic	45.0%
	TGTTGAAGGTCTGCTTCTCA+AGG	-	chr4_1:10990490-10990509	Msa0535110:intron	45.0%
!!	GGGTACTACACTGGTTTCAT+TGG	+	chr4_1:10990519-10990538	None:intergenic	45.0%
	GAAACCAGTGTAGTACCCTT+TGG	-	chr4_1:10990521-10990540	Msa0535110:CDS	45.0%
!	CCTGATGATGAACATGATGC+AGG	+	chr4_1:10990590-10990609	None:intergenic	45.0%
	CCTGCATCATGTTCATCATC+AGG	-	chr4_1:10990587-10990606	Msa0535110:exon	45.0%
!!!	CTGGCTGTTTTGGGTTTAGA+TGG	-	chr4_1:10990719-10990738	Msa0535110:five_prime_UTR	45.0%
!	TTGGGTTTAGATGGTGCTGA+AGG	-	chr4_1:10990728-10990747	Msa0535110:five_prime_UTR	45.0%
!	ATCGTTTTGTAAGCAACGCC+AGG	-	chr4_1:10990763-10990782	Msa0535110:five_prime_UTR	45.0%
!	CTGATCGAAAGCATGTCTGG+TGG	-	chr4_1:10989402-10989421	Msa0535110:intron	50.0%
!!	TAGCATGACACGCCGTTTTG+TGG	-	chr4_1:10989525-10989544	Msa0535110:intron	50.0%
!	GGTACAGGGTACTTGTGGAA+AGG	+	chr4_1:10990097-10990116	None:intergenic	50.0%
!	TGGACACTATGCGAGGGTTT+TGG	+	chr4_1:10990147-10990166	None:intergenic	50.0%
!!	CTTTGGCGTTGGTTTGAAGC+TGG	-	chr4_1:10990297-10990316	Msa0535110:intron	50.0%
	AACAGCCCTTACCAAGAGAG+AGG	-	chr4_1:10990438-10990457	Msa0535110:intron	50.0%
	GGGTATCCTCTCTCTTGGTA+AGG	+	chr4_1:10990447-10990466	None:intergenic	50.0%
!	AGATGGGGTATCCTCTCTCT+TGG	+	chr4_1:10990452-10990471	None:intergenic	50.0%
	GAAGCAGACCTTCAACACTC+TGG	+	chr4_1:10990487-10990506	None:intergenic	50.0%
	ATCTCCAAGGGAGAGTCATC+TGG	+	chr4_1:10990547-10990566	None:intergenic	50.0%
!!!	GGTTTTGGAAGCTGACTGTG+TGG	-	chr4_1:10990644-10990663	Msa0535110:five_prime_UTR	50.0%
!	GGTTTAGATGGTGCTGAAGG+TGG	-	chr4_1:10990731-10990750	Msa0535110:five_prime_UTR	50.0%
!	TTAGATGGTGCTGAAGGTGG+AGG	-	chr4_1:10990734-10990753	Msa0535110:five_prime_UTR	50.0%
	TCCAACGCTTTGTGCTTTCC+TGG	+	chr4_1:10990784-10990803	None:intergenic	50.0%
!!	GGAAAGCACAAAGCGTTGGA+TGG	-	chr4_1:10990784-10990803	Msa0535110:five_prime_UTR	50.0%
!!	AAGCACAAAGCGTTGGATGG+AGG	-	chr4_1:10990787-10990806	Msa0535110:five_prime_UTR	50.0%
!!	ACAAAGCGTTGGATGGAGGA+TGG	-	chr4_1:10990791-10990810	Msa0535110:five_prime_UTR	50.0%
	TCGGTCAGAAGGAGGTTAGA+CGG	-	chr4_1:10990825-10990844	Msa0535110:five_prime_UTR	50.0%
	TCAGAAGGAGGTTAGACGGT+GGG	-	chr4_1:10990829-10990848	Msa0535110:five_prime_UTR	50.0%
!	CTGATCGAAAGCATGTCTGG+TGG	-	chr4_1:10989402-10989421	Msa0535110:intron	50.0%
!!	TAGCATGACACGCCGTTTTG+TGG	-	chr4_1:10989525-10989544	Msa0535110:intron	50.0%
!	GGTACAGGGTACTTGTGGAA+AGG	+	chr4_1:10990097-10990116	None:intergenic	50.0%
!	TGGACACTATGCGAGGGTTT+TGG	+	chr4_1:10990147-10990166	None:intergenic	50.0%
!!	CTTTGGCGTTGGTTTGAAGC+TGG	-	chr4_1:10990297-10990316	Msa0535110:intron	50.0%
	AACAGCCCTTACCAAGAGAG+AGG	-	chr4_1:10990438-10990457	Msa0535110:intron	50.0%
	GGGTATCCTCTCTCTTGGTA+AGG	+	chr4_1:10990447-10990466	None:intergenic	50.0%
!	AGATGGGGTATCCTCTCTCT+TGG	+	chr4_1:10990452-10990471	None:intergenic	50.0%
	GAAGCAGACCTTCAACACTC+TGG	+	chr4_1:10990487-10990506	None:intergenic	50.0%
	ATCTCCAAGGGAGAGTCATC+TGG	+	chr4_1:10990547-10990566	None:intergenic	50.0%
!!!	GGTTTTGGAAGCTGACTGTG+TGG	-	chr4_1:10990644-10990663	Msa0535110:five_prime_UTR	50.0%
!	GGTTTAGATGGTGCTGAAGG+TGG	-	chr4_1:10990731-10990750	Msa0535110:five_prime_UTR	50.0%
!	TTAGATGGTGCTGAAGGTGG+AGG	-	chr4_1:10990734-10990753	Msa0535110:five_prime_UTR	50.0%
	TCCAACGCTTTGTGCTTTCC+TGG	+	chr4_1:10990784-10990803	None:intergenic	50.0%
!!	GGAAAGCACAAAGCGTTGGA+TGG	-	chr4_1:10990784-10990803	Msa0535110:five_prime_UTR	50.0%
!!	AAGCACAAAGCGTTGGATGG+AGG	-	chr4_1:10990787-10990806	Msa0535110:five_prime_UTR	50.0%
!!	ACAAAGCGTTGGATGGAGGA+TGG	-	chr4_1:10990791-10990810	Msa0535110:five_prime_UTR	50.0%
	TCGGTCAGAAGGAGGTTAGA+CGG	-	chr4_1:10990825-10990844	Msa0535110:five_prime_UTR	50.0%
	TCAGAAGGAGGTTAGACGGT+GGG	-	chr4_1:10990829-10990848	Msa0535110:five_prime_UTR	50.0%
	TCTGACCCACACTTTGGCGT+TGG	-	chr4_1:10990286-10990305	Msa0535110:intron	55.0%
!!	CTGGCCAAAGGGTACTACAC+TGG	+	chr4_1:10990528-10990547	None:intergenic	55.0%
	GGGAGAGTCATCTGGCCAAA+GGG	+	chr4_1:10990539-10990558	None:intergenic	55.0%
	AGGGAGAGTCATCTGGCCAA+AGG	+	chr4_1:10990540-10990559	None:intergenic	55.0%
	TTGGCCAGATGACTCTCCCT+TGG	-	chr4_1:10990540-10990559	Msa0535110:CDS	55.0%
!	GCCAGGAAAGCACAAAGCGT+TGG	-	chr4_1:10990780-10990799	Msa0535110:five_prime_UTR	55.0%
	TTGGATGGAGGATGGCATGG+TGG	-	chr4_1:10990799-10990818	Msa0535110:five_prime_UTR	55.0%
!	GAGGATGGCATGGTGGTGAT+CGG	-	chr4_1:10990806-10990825	Msa0535110:five_prime_UTR	55.0%
!	CATGGTGGTGATCGGTCAGA+AGG	-	chr4_1:10990814-10990833	Msa0535110:five_prime_UTR	55.0%
	GTCAGAAGGAGGTTAGACGG+TGG	-	chr4_1:10990828-10990847	Msa0535110:five_prime_UTR	55.0%
!	GAGGTTAGACGGTGGGTTTG+AGG	-	chr4_1:10990836-10990855	Msa0535110:five_prime_UTR	55.0%
	TCTGACCCACACTTTGGCGT+TGG	-	chr4_1:10990286-10990305	Msa0535110:intron	55.0%
!!	CTGGCCAAAGGGTACTACAC+TGG	+	chr4_1:10990528-10990547	None:intergenic	55.0%
	GGGAGAGTCATCTGGCCAAA+GGG	+	chr4_1:10990539-10990558	None:intergenic	55.0%
	AGGGAGAGTCATCTGGCCAA+AGG	+	chr4_1:10990540-10990559	None:intergenic	55.0%
	TTGGCCAGATGACTCTCCCT+TGG	-	chr4_1:10990540-10990559	Msa0535110:CDS	55.0%
!	GCCAGGAAAGCACAAAGCGT+TGG	-	chr4_1:10990780-10990799	Msa0535110:five_prime_UTR	55.0%
	TTGGATGGAGGATGGCATGG+TGG	-	chr4_1:10990799-10990818	Msa0535110:five_prime_UTR	55.0%
!	GAGGATGGCATGGTGGTGAT+CGG	-	chr4_1:10990806-10990825	Msa0535110:five_prime_UTR	55.0%
!	CATGGTGGTGATCGGTCAGA+AGG	-	chr4_1:10990814-10990833	Msa0535110:five_prime_UTR	55.0%
	GTCAGAAGGAGGTTAGACGG+TGG	-	chr4_1:10990828-10990847	Msa0535110:five_prime_UTR	55.0%
!	GATGGTGCTGAAGGTGGAGG+AGG	-	chr4_1:10990737-10990756	Msa0535110:five_prime_UTR	60.0%
	GCGTTGGATGGAGGATGGCA+TGG	-	chr4_1:10990796-10990815	Msa0535110:five_prime_UTR	60.0%
	GGTGGTGATCGGTCAGAAGG+AGG	-	chr4_1:10990817-10990836	Msa0535110:five_prime_UTR	60.0%
!	GATGGTGCTGAAGGTGGAGG+AGG	-	chr4_1:10990737-10990756	Msa0535110:five_prime_UTR	60.0%
	GCGTTGGATGGAGGATGGCA+TGG	-	chr4_1:10990796-10990815	Msa0535110:five_prime_UTR	60.0%
	GGTGGTGATCGGTCAGAAGG+AGG	-	chr4_1:10990817-10990836	Msa0535110:five_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	10988991	10990856	10988991	ID=Msa0535110;Name=Msa0535110
chr4_1	mRNA	10988991	10990856	10988991	ID=Msa0535110-mRNA-1;Parent=Msa0535110;Name=Msa0535110-mRNA-1;_AED=0.21;_eAED=0.21;_QI=269\|0.33\|0.25\|0.5\|1\|1\|4\|0\|176
chr4_1	exon	10988991	10989109	10988991	ID=Msa0535110-mRNA-1:exon:3536;Parent=Msa0535110-mRNA-1
chr4_1	exon	10989251	10989359	10989251	ID=Msa0535110-mRNA-1:exon:3535;Parent=Msa0535110-mRNA-1
chr4_1	exon	10990052	10990272	10990052	ID=Msa0535110-mRNA-1:exon:3534;Parent=Msa0535110-mRNA-1
chr4_1	exon	10990506	10990856	10990506	ID=Msa0535110-mRNA-1:exon:3533;Parent=Msa0535110-mRNA-1
chr4_1	five_prime_UTR	10990588	10990856	10990588	ID=Msa0535110-mRNA-1:five_prime_utr;Parent=Msa0535110-mRNA-1
chr4_1	CDS	10990506	10990587	10990506	ID=Msa0535110-mRNA-1:cds;Parent=Msa0535110-mRNA-1
chr4_1	CDS	10990052	10990272	10990052	ID=Msa0535110-mRNA-1:cds;Parent=Msa0535110-mRNA-1
chr4_1	CDS	10989251	10989359	10989251	ID=Msa0535110-mRNA-1:cds;Parent=Msa0535110-mRNA-1
chr4_1	CDS	10988991	10989109	10988991	ID=Msa0535110-mRNA-1:cds;Parent=Msa0535110-mRNA-1

Gene Sequence

>Msa0535110

ATGGGGGGTCGTTGCTCTAAATTCTCTTTCTGTTGGTTCCACTGTCATCTCAATCCTTCTGTTCTTGAATCCTCTGATCAAGAAAATGGTGGCAAGAGTGAAAAAAACTTGTGGCCTAGTTTTCATGAGTACAGTTTGGAAGAATTGAAGGCTGCCACAAATGGATTCTCCTCTGAAAACATTGTTTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTTTACAAAGGGAAACTTGAGAATGGACTGTTGATTGCCGTCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGACAATTCATTAGTGTTGAAGGTCTGCTTCTCAAGGATTCCAATGAAACCAGTGTAGTACCCTTTGGCCAGATGACTCTCCCTTGGAGATTATGTTTACAATCGTTCAATCCTGCATCATATGGTGCTGAAGGTGGAGGAGGAGCATCGTTTTGTAAGCAACGCCAGGAAAGCACAAAGCGTTGGATGGAGGATGGCATGGTGGTGATCGGTCAGAAGGAGGTTAGACGGTGGGTTTGA

Protein sequence

>Msa0535110

MGGRCSKFSFCWFHCHLNPSVLESSDQENGGKSEKNLWPSFHEYSLEELKAATNGFSSENIVSEHGEKAPNVVYKGKLENGLLIAVKRFNKFAWPDSRQFISVEGLLLKDSNETSVVPFGQMTLPWRLCLQSFNPASYGAEGGGGASFCKQRQESTKRWMEDGMVVIGQKEVRRWV*