AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277080 MtrunA17_Chr8g0345071 92.283 622 48 0 1 622 1 622 0.0 1187
Msa1277080 MtrunA17_Chr4g0028881 28.814 295 173 9 52 332 592 863 3.69e-29 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277080 AT5G12260.1 52.532 632 258 9 4 622 22 624 0.0 630
Msa1277080 AT5G60700.1 28.986 276 159 7 52 311 324 578 6.25e-25 110
Msa1277080 AT5G60700.2 28.618 304 170 8 34 311 560 842 9.66e-25 110

Find 168 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCTAGACTTCAATATTT+TGG 0.079759 8_3:-12219915 Msa1277080:CDS
GTATATTGTAACAAAATTAT+TGG 0.174626 8_3:-12219264 Msa1277080:CDS
TTTGATAAGGAAAGTAAAAT+TGG 0.192453 8_3:+12222936 None:intergenic
AAAGAATATGTAAGCTAAAT+TGG 0.209161 8_3:+12218946 None:intergenic
AATCGAATCGAGGAGAATTT+TGG 0.214428 8_3:-12222770 Msa1277080:CDS
TATAAGGAATTATATACTTA+TGG 0.233682 8_3:-12219693 Msa1277080:CDS
GATGGGTTTGAGTGGAAATA+TGG 0.234846 8_3:-12222739 Msa1277080:CDS
TGTAGCCATGGCCGACTCTT+TGG 0.269350 8_3:-12219327 Msa1277080:CDS
CTGAACTCTTTCCATGGCTT+TGG 0.280942 8_3:+12220300 None:intergenic
AGCCTTTGAGTAGTTTAAAA+TGG 0.295749 8_3:-12219886 Msa1277080:CDS
AGAAACATTGCTTGCAGGTT+AGG 0.296890 8_3:+12223131 None:intergenic
AACTGGGAATGTGGGGTTGC+AGG 0.304283 8_3:-12222695 Msa1277080:CDS
GTAGCCATGGCCGACTCTTT+GGG 0.306253 8_3:-12219326 Msa1277080:CDS
TAAGTATAACACATGGGTTT+TGG 0.306286 8_3:-12219498 Msa1277080:CDS
TTCCAATGCTAGTTACAAAT+TGG 0.318749 8_3:+12219609 None:intergenic
AACGGAGTCAAGGCGGTTAA+AGG 0.323886 8_3:+12222906 None:intergenic
CAAAGCCATGGAAAGAGTTC+AGG 0.324713 8_3:-12220299 Msa1277080:CDS
AGAGTTGATGAGACTTCTTT+TGG 0.347350 8_3:-12219218 Msa1277080:CDS
AATTGGTCTACATTGATTAC+AGG 0.347667 8_3:+12219626 None:intergenic
TTGATAAGGAAAGTAAAATT+GGG 0.349088 8_3:+12222937 None:intergenic
GTGTTAGTAAATCTTCTATA+GGG 0.357806 8_3:-12219175 Msa1277080:CDS
TGGTTGGAGGCATGGTGGCC+TGG 0.368096 8_3:-12222667 Msa1277080:CDS
GATTCAGAAACATTGCTTGC+AGG 0.368545 8_3:+12223126 None:intergenic
ATGAGGGTGATGAAGATTAT+TGG 0.369770 8_3:+12223075 None:intergenic
CAACGTGCAAGGTTTGTTCC+AGG 0.371232 8_3:-12222505 Msa1277080:intron
TCCTCTAGTAACTGAGAATC+AGG 0.386913 8_3:+12219941 None:intergenic
ATTGTGAATTTCTATTATAA+TGG 0.387193 8_3:-12222565 Msa1277080:CDS
ATAAGGAATTATATACTTAT+GGG 0.390689 8_3:-12219692 Msa1277080:CDS
ACTTTGAGAGGCTAAATATA+AGG 0.395045 8_3:-12219709 Msa1277080:CDS
TTTCCAAAATATTGAAGTCT+AGG 0.397017 8_3:+12219912 None:intergenic
CATCGTCTAGTGAGAAAATC+TGG 0.398816 8_3:-12219373 Msa1277080:CDS
GAAACATTGCTTGCAGGTTA+GGG 0.400532 8_3:+12223132 None:intergenic
GGGATAGAAAGTTGGTATAT+TGG 0.404991 8_3:-12219154 Msa1277080:CDS
GGAACGGAGGCAACGGGAAA+CGG 0.405809 8_3:+12222888 None:intergenic
GAGTTCCTCACAAACCTTCC+CGG 0.413102 8_3:+12219836 None:intergenic
ATTACCATCCCCTCAAGAAA+TGG 0.420016 8_3:+12220240 None:intergenic
AATAATAAATTGACTTTGCA+AGG 0.420449 8_3:-12219587 Msa1277080:CDS
AAGGTGGTGCATTATAGAAC+TGG 0.428956 8_3:-12222712 Msa1277080:CDS
CAATGTACTCACTTCAAAAC+AGG 0.436407 8_3:+12223215 None:intergenic
AGCGAGGGAACGGAGGCAAC+GGG 0.438756 8_3:+12222882 None:intergenic
GACCAATTTGTAACTAGCAT+TGG 0.442136 8_3:-12219611 Msa1277080:CDS
GTGAGGAACTCCGAAGAACT+TGG 0.447431 8_3:-12219824 Msa1277080:CDS
GGGGTTGCAGGCACAGTGGT+TGG 0.448074 8_3:-12222683 Msa1277080:CDS
ATGGGTTTGAGTGGAAATAT+GGG 0.448133 8_3:-12222738 Msa1277080:CDS
CTCGAGCAATACGTCGGAAG+TGG 0.448985 8_3:+12219460 None:intergenic
GGTGTTAGTAAATCTTCTAT+AGG 0.449571 8_3:-12219176 Msa1277080:CDS
TGTTGTAGAGGATGATTTGG+AGG 0.455071 8_3:-12222623 Msa1277080:CDS
AAGTAAAGTTCCAAGTTCTT+CGG 0.458975 8_3:+12219814 None:intergenic
TTACAATATACACAAAACTT+AGG 0.462586 8_3:+12219276 None:intergenic
GTTGCAGGCACAGTGGTTGG+AGG 0.462772 8_3:-12222680 Msa1277080:CDS
CACAAAACTTAGGCTACCTT+GGG 0.463096 8_3:+12219286 None:intergenic
ACACAAAACTTAGGCTACCT+TGG 0.465958 8_3:+12219285 None:intergenic
CGACATCGGAATTGTTCAAA+GGG 0.466541 8_3:+12222803 None:intergenic
TGCAACACAGAAGTCGTAGT+TGG 0.468556 8_3:+12219427 None:intergenic
ATTCCTTAGTTGATCTGTCC+AGG 0.469134 8_3:-12219658 Msa1277080:CDS
AGGCACAGTGGTTGGAGGCA+TGG 0.469818 8_3:-12222675 Msa1277080:CDS
TTAGATTCGGTGATTGAAGA+TGG 0.470264 8_3:+12223015 None:intergenic
GGCAATAAACCATTTCTTGA+GGG 0.470270 8_3:-12220249 Msa1277080:CDS
TAAAGGCGAGAACTTTGATA+AGG 0.475210 8_3:+12222923 None:intergenic
GCAACACAGAAGTCGTAGTT+GGG 0.475359 8_3:+12219428 None:intergenic
TACCAGTTGGTTGGTACGTG+GGG 0.476158 8_3:-12220336 Msa1277080:CDS
TAGCGAGGGAACGGAGGCAA+CGG 0.477025 8_3:+12222881 None:intergenic
GTAAACTACGGGAAAACTGC+TGG 0.477601 8_3:-12219965 Msa1277080:CDS
ATCAAGTTTATTCAATCCCA+TGG 0.479740 8_3:-12220055 Msa1277080:CDS
TACAGGTTGGTATAAGAAGA+TGG 0.482010 8_3:-12220104 Msa1277080:CDS
GGTACAAGAAAAGCCGTGTC+TGG 0.487955 8_3:+12220355 None:intergenic
TGTGAAATTAGGGTTAGATT+CGG 0.488066 8_3:+12223002 None:intergenic
CTACACTACTAAGGTGTAAG+TGG 0.489343 8_3:+12223243 None:intergenic
CAGGACAAGCTACACTACTA+AGG 0.495147 8_3:+12223234 None:intergenic
AGTGTCTCTCACAGAGATGC+TGG 0.499752 8_3:-12219989 Msa1277080:CDS
CATTATAGAACTGGGAATGT+GGG 0.500233 8_3:-12222703 Msa1277080:CDS
TTCCAAAATATTGAAGTCTA+GGG 0.502471 8_3:+12219913 None:intergenic
GGCTCAAAGAGTTGAATTTG+TGG 0.504607 8_3:-12219097 Msa1277080:CDS
ATGTGAGGCTTAAGATAGAC+TGG 0.506086 8_3:-12218881 Msa1277080:three_prime_UTR
TAAACCATTTCTTGAGGGGA+TGG 0.511562 8_3:-12220244 Msa1277080:intron
TTCTATAGGGGATAGAAAGT+TGG 0.511950 8_3:-12219162 Msa1277080:CDS
TAGATTCGGTGATTGAAGAT+GGG 0.513385 8_3:+12223016 None:intergenic
TTGTTTCAGAGAAGTACGTC+CGG 0.518864 8_3:-12219855 Msa1277080:CDS
GATTACAGGATGTCCCCTCC+TGG 0.522682 8_3:+12219640 None:intergenic
GTGACAAACCACAGCAGTGC+AGG 0.523193 8_3:+12219055 None:intergenic
GGTATATTGGTCAACTGAGA+TGG 0.527978 8_3:-12219141 Msa1277080:CDS
TGATAAGGAAAGTAAAATTG+GGG 0.529776 8_3:+12222938 None:intergenic
TGTACCAGTTGGTTGGTACG+TGG 0.531077 8_3:-12220338 Msa1277080:CDS
GTACCAGTTGGTTGGTACGT+GGG 0.532663 8_3:-12220337 Msa1277080:CDS
ACTTATTATGCAACTTTGAG+AGG 0.533453 8_3:-12219721 Msa1277080:CDS
CCTCCTGGACAGATCAACTA+AGG 0.538149 8_3:+12219655 None:intergenic
GCATTATAGAACTGGGAATG+TGG 0.539284 8_3:-12222704 Msa1277080:CDS
ACAGGTTGGTATAAGAAGAT+GGG 0.539416 8_3:-12220103 Msa1277080:CDS
TTTCTGGTTGCAGGTAAACA+TGG 0.542336 8_3:-12220399 Msa1277080:intron
GGCAACGGGAAACGGAGTCA+AGG 0.544053 8_3:+12222896 None:intergenic
TTGGTCAACTGAGATGGAGC+TGG 0.544199 8_3:-12219135 Msa1277080:CDS
AGCTGGAATCGATTCAGAAA+CGG 0.546858 8_3:-12219118 Msa1277080:CDS
GGCATGAAGATTGGTTCAGA+TGG 0.547588 8_3:-12219197 Msa1277080:CDS
TATCAATGGTATTGTGGCCA+AGG 0.547652 8_3:-12219549 Msa1277080:CDS
GATCAATGTAAACATGGAGG+TGG 0.553596 8_3:+12222833 None:intergenic
CACAACCTGAACTCTTTCCA+TGG 0.556620 8_3:+12220294 None:intergenic
CACAGTGGTTGGAGGCATGG+TGG 0.556833 8_3:-12222672 Msa1277080:CDS
AAATTCTCTTTCCAAAGCCA+TGG 0.558733 8_3:-12220311 Msa1277080:CDS
GGGTGATGAAGATTATTGGA+AGG 0.559561 8_3:+12223079 None:intergenic
TGAGTGGAAATATGGGGAAA+AGG 0.559973 8_3:-12222731 Msa1277080:CDS
CAAATTAAGTTGCCAATGTG+AGG 0.562445 8_3:-12218896 Msa1277080:three_prime_UTR
CGAGGTAATCTGCGGTAGCG+AGG 0.563235 8_3:+12222866 None:intergenic
ACAAAATTATTGGAACAGAA+TGG 0.563402 8_3:-12219254 Msa1277080:CDS
AAGCAATGTTTCTGAATCAA+TGG 0.564515 8_3:-12223121 Msa1277080:exon
TCGAGCAATACGTCGGAAGT+GGG 0.564902 8_3:+12219461 None:intergenic
CATAGATATTAAAGTAACCA+TGG 0.565495 8_3:+12220038 None:intergenic
GTGCTACATTGCAACGTGCA+AGG 0.565901 8_3:-12222516 Msa1277080:CDS
GGGCAATAAACCATTTCTTG+AGG 0.565913 8_3:-12220250 Msa1277080:CDS
TCGACATCGGAATTGTTCAA+AGG 0.568583 8_3:+12222802 None:intergenic
TTAGTTGATCTGTCCAGGAG+GGG 0.569329 8_3:-12219653 Msa1277080:CDS
TAGCCATGGCCGACTCTTTG+GGG 0.570869 8_3:-12219325 Msa1277080:CDS
TCGAGAATTGAGACTATCAA+TGG 0.571836 8_3:-12219563 Msa1277080:CDS
TCTCCCCAAAGAGTCGGCCA+TGG 0.572603 8_3:+12219322 None:intergenic
TGAGACTATCAATGGTATTG+TGG 0.572970 8_3:-12219555 Msa1277080:CDS
CGTGTCGAAAATTGTAGCCA+TGG 0.573375 8_3:-12219339 Msa1277080:CDS
AGAGATGCTGGAGTAAACTA+CGG 0.576521 8_3:-12219977 Msa1277080:CDS
AATCTGCGGTAGCGAGGGAA+CGG 0.577455 8_3:+12222872 None:intergenic
TGTTTCAGAGAAGTACGTCC+GGG 0.579351 8_3:-12219854 Msa1277080:CDS
CAATGTTTCTGAATCAATGG+TGG 0.580708 8_3:-12223118 Msa1277080:exon
TGAGTTATCCTGCACTGCTG+TGG 0.583109 8_3:-12219063 Msa1277080:CDS
GATTAATTTCAAATCGACAT+CGG 0.585392 8_3:+12222789 None:intergenic
ACATGGCAACAAGTTGCAGT+TGG 0.586027 8_3:-12220382 Msa1277080:CDS
AGATCAACTAAGGAATCAGA+TGG 0.589175 8_3:+12219665 None:intergenic
TACACTACTAAGGTGTAAGT+GGG 0.591524 8_3:+12223244 None:intergenic
TCAGAGAAGTACGTCCGGGA+AGG 0.592231 8_3:-12219850 Msa1277080:CDS
GAGGTAATCTGCGGTAGCGA+GGG 0.592429 8_3:+12222867 None:intergenic
CATGGAAAGAGTTCAGGTTG+TGG 0.593334 8_3:-12220293 Msa1277080:CDS
CAGGTTGGTATAAGAAGATG+GGG 0.594384 8_3:-12220102 Msa1277080:CDS
CTTAGTTGATCTGTCCAGGA+GGG 0.596904 8_3:-12219654 Msa1277080:CDS
AGTGAGAAAATCTGGACCAA+TGG 0.598068 8_3:-12219365 Msa1277080:CDS
TGCAGTTGGATGACCAGACA+CGG 0.604167 8_3:-12220368 Msa1277080:CDS
CTGCGGTAGCGAGGGAACGG+AGG 0.606642 8_3:+12222875 None:intergenic
GGGAGAGAATATGGACACCT+TGG 0.608370 8_3:-12220081 Msa1277080:CDS
GTAGAAGATGAATGCAATGA+GGG 0.610191 8_3:+12223059 None:intergenic
GCAATAAACCATTTCTTGAG+GGG 0.614967 8_3:-12220248 Msa1277080:CDS
ATAGATATTAAAGTAACCAT+GGG 0.616127 8_3:+12220039 None:intergenic
AGGTGGTGCATTATAGAACT+GGG 0.617157 8_3:-12222711 Msa1277080:CDS
GAGATGCTGGAGTAAACTAC+GGG 0.619627 8_3:-12219976 Msa1277080:CDS
TGAATAAACTTGATGAACCA+AGG 0.620022 8_3:+12220064 None:intergenic
TAAAATGATCAATGTAAACA+TGG 0.621057 8_3:+12222827 None:intergenic
GCAAACTCATCATCTGAACC+AGG 0.624097 8_3:+12222649 None:intergenic
CTCGCTACCGCAGATTACCT+CGG 0.624278 8_3:-12222865 Msa1277080:CDS
ATGTGGGGTTGCAGGCACAG+TGG 0.624568 8_3:-12222687 Msa1277080:CDS
AATGTTTCTGAATCAATGGT+GGG 0.632448 8_3:-12223117 Msa1277080:exon
ACCTGATTCTCAGTTACTAG+AGG 0.633008 8_3:-12219942 Msa1277080:CDS
TGTTAGTAAATCTTCTATAG+GGG 0.633783 8_3:-12219174 Msa1277080:CDS
TCAACTAAGGAATCAGATGG+AGG 0.634530 8_3:+12219668 None:intergenic
ATTTGAAATTAATCGAATCG+AGG 0.635294 8_3:-12222780 Msa1277080:CDS
CAACTAAGGAATCAGATGGA+GGG 0.635405 8_3:+12219669 None:intergenic
TGGGTTTGAGTGGAAATATG+GGG 0.640050 8_3:-12222737 Msa1277080:CDS
TCGAAAGTAAGTATAACACA+TGG 0.642011 8_3:-12219505 Msa1277080:CDS
TACGTCCGGGAAGGTTTGTG+AGG 0.642856 8_3:-12219841 Msa1277080:CDS
CGAAAGTAAGTATAACACAT+GGG 0.644749 8_3:-12219504 Msa1277080:CDS
ACCAGTTGGTTGGTACGTGG+GGG 0.646304 8_3:-12220335 Msa1277080:CDS
GTCTATCTTAAGCCTCACAT+TGG 0.650652 8_3:+12218884 None:intergenic
TCTAGACTCGAGCAATACGT+CGG 0.655138 8_3:+12219454 None:intergenic
GTGGAAATATGGGGAAAAGG+TGG 0.657369 8_3:-12222728 Msa1277080:CDS
GATAAGGAAAGTAAAATTGG+GGG 0.658590 8_3:+12222939 None:intergenic
AGAAAAGACTCATCAACCCA+AGG 0.660215 8_3:-12219302 Msa1277080:CDS
GGAGGTGGACGCGATCGCCG+AGG 0.671713 8_3:+12222848 None:intergenic
ATTATAGAACTGGGAATGTG+GGG 0.673105 8_3:-12222702 Msa1277080:CDS
AATGATCAATGTAAACATGG+AGG 0.690634 8_3:+12222830 None:intergenic
TGTAGAAGATGAATGCAATG+AGG 0.693890 8_3:+12223058 None:intergenic
CCTTAGTTGATCTGTCCAGG+AGG 0.697637 8_3:-12219655 Msa1277080:CDS
AACGGGAAACGGAGTCAAGG+CGG 0.705636 8_3:+12222899 None:intergenic
GCGATCGCCGAGGTAATCTG+CGG 0.722123 8_3:+12222858 None:intergenic
GACATCGGAATTGTTCAAAG+GGG 0.736359 8_3:+12222804 None:intergenic
AGGTTGGTATAAGAAGATGG+GGG 0.761473 8_3:-12220101 Msa1277080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACTCAATTAATAT+AGG + chr8_3:12223097-12223116 None:intergenic 10.0%
!! ATTGTGAATTTCTATTATAA+TGG - chr8_3:12219509-12219528 Msa1277080:CDS 15.0%
!! TATATAAAAGATCATTAGAT+AGG - chr8_3:12219886-12219905 Msa1277080:CDS 15.0%
!! ATATAAAAGATCATTAGATA+GGG - chr8_3:12219887-12219906 Msa1277080:CDS 15.0%
!! AATATAAGATTATTGGATAA+AGG - chr8_3:12220100-12220119 Msa1277080:CDS 15.0%
!!! TTTTAAAAACACTGTTTTTT+TGG + chr8_3:12220997-12221016 None:intergenic 15.0%
!! TCAAAATTAATAAAGAGTAA+AGG + chr8_3:12221354-12221373 None:intergenic 15.0%
!! TATAAGGAATTATATACTTA+TGG - chr8_3:12222381-12222400 Msa1277080:intron 15.0%
!! ATAAGGAATTATATACTTAT+GGG - chr8_3:12222382-12222401 Msa1277080:intron 15.0%
!! GTATATTGTAACAAAATTAT+TGG - chr8_3:12222810-12222829 Msa1277080:CDS 15.0%
!! TTGATAAGGAAAGTAAAATT+GGG + chr8_3:12219140-12219159 None:intergenic 20.0%
!! TTTGATAAGGAAAGTAAAAT+TGG + chr8_3:12219141-12219160 None:intergenic 20.0%
!! TAAAATGATCAATGTAAACA+TGG + chr8_3:12219250-12219269 None:intergenic 20.0%
!! CAAAGTAAACAAAAACAAAA+TGG + chr8_3:12219597-12219616 None:intergenic 20.0%
!!! ATCAGGAATTTTATAGAAAA+AGG - chr8_3:12220173-12220192 Msa1277080:intron 20.0%
!!! TAATTTAAAACGTTTCACAA+GGG - chr8_3:12220517-12220536 Msa1277080:intron 20.0%
!! TTTAAAAATCCATAATACCA+TGG - chr8_3:12221010-12221029 Msa1277080:intron 20.0%
!! AATTAATAAAGAGTAAAGGA+TGG + chr8_3:12221350-12221369 None:intergenic 20.0%
!! GCATCATTATTCAAAATTAA+TGG + chr8_3:12221469-12221488 None:intergenic 20.0%
!! TACATAAGTTAACCAAAAAT+GGG + chr8_3:12221568-12221587 None:intergenic 20.0%
!! ATACATAAGTTAACCAAAAA+TGG + chr8_3:12221569-12221588 None:intergenic 20.0%
!! AAAATTTCAGAACTACTATT+AGG + chr8_3:12221939-12221958 None:intergenic 20.0%
!! ATAGATATTAAAGTAACCAT+GGG + chr8_3:12222038-12222057 None:intergenic 20.0%
!!! AATAATAAATTGACTTTGCA+AGG - chr8_3:12222487-12222506 Msa1277080:intron 20.0%
!! TTACAATATACACAAAACTT+AGG + chr8_3:12222801-12222820 None:intergenic 20.0%
!! AAAGAATATGTAAGCTAAAT+TGG + chr8_3:12223131-12223150 None:intergenic 20.0%
!!! AATTAGGGTTTTTTGGAATT+GGG + chr8_3:12219106-12219125 None:intergenic 25.0%
!!! ATTGTTGAATTAGGGTTTTT+TGG + chr8_3:12219113-12219132 None:intergenic 25.0%
! TGATAAGGAAAGTAAAATTG+GGG + chr8_3:12219139-12219158 None:intergenic 25.0%
! GATTAATTTCAAATCGACAT+CGG + chr8_3:12219288-12219307 None:intergenic 25.0%
!! ATTTGAAATTAATCGAATCG+AGG - chr8_3:12219294-12219313 Msa1277080:CDS 25.0%
!! AGAATTTTGGATTTTGTTGA+TGG - chr8_3:12219317-12219336 Msa1277080:CDS 25.0%
!! GAATTTTGGATTTTGTTGAT+GGG - chr8_3:12219318-12219337 Msa1277080:CDS 25.0%
!! AATTATAGTCCTTCCATTTT+TGG - chr8_3:12219536-12219555 Msa1277080:CDS 25.0%
!! GTTTTTACACTGTGATTTAT+AGG - chr8_3:12219652-12219671 Msa1277080:CDS 25.0%
! GTGATTTATAGGTATAATAC+AGG - chr8_3:12219663-12219682 Msa1277080:CDS 25.0%
!!! AAACCAAGGCTTTTTTATAA+GGG + chr8_3:12219838-12219857 None:intergenic 25.0%
!!! AAAACCAAGGCTTTTTTATA+AGG + chr8_3:12219839-12219858 None:intergenic 25.0%
!!! TATAAAAAAGCCTTGGTTTT+AGG - chr8_3:12219839-12219858 Msa1277080:CDS 25.0%
!!! GTTGTCTACAATTTTTTACT+AGG - chr8_3:12220122-12220141 Msa1277080:intron 25.0%
!!! TACAATTTTTTACTAGGAGT+GGG - chr8_3:12220128-12220147 Msa1277080:intron 25.0%
! TGAGAAGATAGAATAGAAAT+AGG - chr8_3:12220330-12220349 Msa1277080:CDS 25.0%
! ATAGAATAGAAATAGGTGTA+AGG - chr8_3:12220337-12220356 Msa1277080:CDS 25.0%
! TAGAATAGAAATAGGTGTAA+GGG - chr8_3:12220338-12220357 Msa1277080:CDS 25.0%
!!! CTTGTGAAACGTTTTAAATT+AGG + chr8_3:12220518-12220537 None:intergenic 25.0%
!! CTAATTTAAAACGTTTCACA+AGG - chr8_3:12220516-12220535 Msa1277080:intron 25.0%
!! GCTAAACTTTTATTAATACG+CGG - chr8_3:12220913-12220932 Msa1277080:intron 25.0%
! ACATAAGTTAACCAAAAATG+GGG + chr8_3:12221567-12221586 None:intergenic 25.0%
! ATTTCTGTACAGTTTATTGA+TGG - chr8_3:12221643-12221662 Msa1277080:intron 25.0%
!! CAGTTTATTGATGGTATAAT+TGG - chr8_3:12221652-12221671 Msa1277080:intron 25.0%
!!! GTAGTTCTGAAATTTTTTAC+AGG - chr8_3:12221943-12221962 Msa1277080:intron 25.0%
! CATAGATATTAAAGTAACCA+TGG + chr8_3:12222039-12222058 None:intergenic 25.0%
! TTCCAAAATATTGAAGTCTA+GGG + chr8_3:12222164-12222183 None:intergenic 25.0%
! TTTCCAAAATATTGAAGTCT+AGG + chr8_3:12222165-12222184 None:intergenic 25.0%
!! AACCATTTTAAACTACTCAA+AGG + chr8_3:12222193-12222212 None:intergenic 25.0%
!! ATCTTCTTAGTAGATCTTTT+AGG - chr8_3:12222307-12222326 Msa1277080:intron 25.0%
!! TCTTCTTAGTAGATCTTTTA+GGG - chr8_3:12222308-12222327 Msa1277080:intron 25.0%
!!! CTTTTTAATTACATAAGCCT+TGG + chr8_3:12222545-12222564 None:intergenic 25.0%
! ACAAAATTATTGGAACAGAA+TGG - chr8_3:12222820-12222839 Msa1277080:CDS 25.0%
! GTGTTAGTAAATCTTCTATA+GGG - chr8_3:12222899-12222918 Msa1277080:CDS 25.0%
! TGTTAGTAAATCTTCTATAG+GGG - chr8_3:12222900-12222919 Msa1277080:CDS 25.0%
! AAGCAATGTTTCTGAATCAA+TGG - chr8_3:12218953-12218972 Msa1277080:three_prime_UTR 30.0%
! AATGTTTCTGAATCAATGGT+GGG - chr8_3:12218957-12218976 Msa1277080:three_prime_UTR 30.0%
TGTGAAATTAGGGTTAGATT+CGG + chr8_3:12219075-12219094 None:intergenic 30.0%
!! GGGATTTTAGTGTGAAATTA+GGG + chr8_3:12219085-12219104 None:intergenic 30.0%
!!! ATTAGGGTTTTTTGGAATTG+GGG + chr8_3:12219105-12219124 None:intergenic 30.0%
!!! GAATTAGGGTTTTTTGGAAT+TGG + chr8_3:12219107-12219126 None:intergenic 30.0%
GATAAGGAAAGTAAAATTGG+GGG + chr8_3:12219138-12219157 None:intergenic 30.0%
AATGATCAATGTAAACATGG+AGG + chr8_3:12219247-12219266 None:intergenic 30.0%
!! TTTTGTTGTAGAGGATGATT+TGG - chr8_3:12219448-12219467 Msa1277080:CDS 30.0%
AACAAAAACAAAATGGTACC+TGG + chr8_3:12219590-12219609 None:intergenic 30.0%
!! ATGAAGTAGACTTGTTACAA+TGG - chr8_3:12219624-12219643 Msa1277080:CDS 30.0%
ATTACTTGAACCTAAAACCA+AGG + chr8_3:12219852-12219871 None:intergenic 30.0%
CCAATAACCAATCTCTTTAT+TGG + chr8_3:12220053-12220072 None:intergenic 30.0%
! CCAATAAAGAGATTGGTTAT+TGG - chr8_3:12220050-12220069 Msa1277080:CDS 30.0%
!!! CTACAATTTTTTACTAGGAG+TGG - chr8_3:12220127-12220146 Msa1277080:intron 30.0%
TCAGTTTATTCTTCGATATC+AGG - chr8_3:12220156-12220175 Msa1277080:intron 30.0%
ATAATGTATGCTTAGCATGT+TGG - chr8_3:12220390-12220409 Msa1277080:intron 30.0%
TTCAAAAACCAGACAAACAA+TGG + chr8_3:12220416-12220435 None:intergenic 30.0%
!!! ATTGTTTGTCTGGTTTTTGA+AGG - chr8_3:12220415-12220434 Msa1277080:intron 30.0%
!!! TTGTTTGTCTGGTTTTTGAA+GGG - chr8_3:12220416-12220435 Msa1277080:intron 30.0%
TCAATTCTGCTAATGATATC+TGG - chr8_3:12220473-12220492 Msa1277080:intron 30.0%
CAATTCTGCTAATGATATCT+GGG - chr8_3:12220474-12220493 Msa1277080:intron 30.0%
AATTCTGCTAATGATATCTG+GGG - chr8_3:12220475-12220494 Msa1277080:intron 30.0%
GATTGACAATCATAACAACA+AGG + chr8_3:12220680-12220699 None:intergenic 30.0%
AATTATCTCTTTGGTCTGTT+GGG + chr8_3:12221253-12221272 None:intergenic 30.0%
TAATTATCTCTTTGGTCTGT+TGG + chr8_3:12221254-12221273 None:intergenic 30.0%
GTTGGGTTTAATTATCTCTT+TGG + chr8_3:12221262-12221281 None:intergenic 30.0%
TAATAAAGAGTAAAGGATGG+TGG + chr8_3:12221347-12221366 None:intergenic 30.0%
! TTACGTTTTCTTGTGTACTA+AGG - chr8_3:12221412-12221431 Msa1277080:intron 30.0%
AAAAGGGTTCAAAAGTTACA+TGG + chr8_3:12221491-12221510 None:intergenic 30.0%
GAAGTATAGCACAATTAGAA+AGG + chr8_3:12221608-12221627 None:intergenic 30.0%
! TTGATGGTATAATTGGTTTC+TGG - chr8_3:12221659-12221678 Msa1277080:intron 30.0%
TATGACAAAAACAAGGCAAA+GGG - chr8_3:12221804-12221823 Msa1277080:intron 30.0%
!!! AATTTTTTACAGGTGACTAC+AGG - chr8_3:12221953-12221972 Msa1277080:intron 30.0%
TGAATAAACTTGATGAACCA+AGG + chr8_3:12222013-12222032 None:intergenic 30.0%
ATCAAGTTTATTCAATCCCA+TGG - chr8_3:12222019-12222038 Msa1277080:intron 30.0%
! ATCCCTAGACTTCAATATTT+TGG - chr8_3:12222159-12222178 Msa1277080:intron 30.0%
AGCCTTTGAGTAGTTTAAAA+TGG - chr8_3:12222188-12222207 Msa1277080:intron 30.0%
AAGTAAAGTTCCAAGTTCTT+CGG + chr8_3:12222263-12222282 None:intergenic 30.0%
! CTTCTTAGTAGATCTTTTAG+GGG - chr8_3:12222309-12222328 Msa1277080:intron 30.0%
ACTTATTATGCAACTTTGAG+AGG - chr8_3:12222353-12222372 Msa1277080:intron 30.0%
! ACTTTGAGAGGCTAAATATA+AGG - chr8_3:12222365-12222384 Msa1277080:intron 30.0%
! AATTGGTCTACATTGATTAC+AGG + chr8_3:12222451-12222470 None:intergenic 30.0%
TTCCAATGCTAGTTACAAAT+TGG + chr8_3:12222468-12222487 None:intergenic 30.0%
TCGAAAGTAAGTATAACACA+TGG - chr8_3:12222569-12222588 Msa1277080:CDS 30.0%
CGAAAGTAAGTATAACACAT+GGG - chr8_3:12222570-12222589 Msa1277080:CDS 30.0%
! TAAGTATAACACATGGGTTT+TGG - chr8_3:12222576-12222595 Msa1277080:CDS 30.0%
GGTGTTAGTAAATCTTCTAT+AGG - chr8_3:12222898-12222917 Msa1277080:CDS 30.0%
! TCACAAGTCATAGCTTTTAA+TGG - chr8_3:12223038-12223057 Msa1277080:CDS 30.0%
! AAGTCATAGCTTTTAATGGT+AGG - chr8_3:12223042-12223061 Msa1277080:CDS 30.0%
TACACTACTAAGGTGTAAGT+GGG + chr8_3:12218833-12218852 None:intergenic 35.0%
CAATGTACTCACTTCAAAAC+AGG + chr8_3:12218862-12218881 None:intergenic 35.0%
! CAATGTTTCTGAATCAATGG+TGG - chr8_3:12218956-12218975 Msa1277080:three_prime_UTR 35.0%
!!! ATTGGAAGGAAGTGCTTTTT+GGG + chr8_3:12218984-12219003 None:intergenic 35.0%
!!! TATTGGAAGGAAGTGCTTTT+TGG + chr8_3:12218985-12219004 None:intergenic 35.0%
ATGAGGGTGATGAAGATTAT+TGG + chr8_3:12219002-12219021 None:intergenic 35.0%
GTAGAAGATGAATGCAATGA+GGG + chr8_3:12219018-12219037 None:intergenic 35.0%
TGTAGAAGATGAATGCAATG+AGG + chr8_3:12219019-12219038 None:intergenic 35.0%
!! TAGATTCGGTGATTGAAGAT+GGG + chr8_3:12219061-12219080 None:intergenic 35.0%
!! TTAGATTCGGTGATTGAAGA+TGG + chr8_3:12219062-12219081 None:intergenic 35.0%
!! GGGGATTTTAGTGTGAAATT+AGG + chr8_3:12219086-12219105 None:intergenic 35.0%
TGGGGGAAATTGTTGAATTA+GGG + chr8_3:12219121-12219140 None:intergenic 35.0%
TTGGGGGAAATTGTTGAATT+AGG + chr8_3:12219122-12219141 None:intergenic 35.0%
TAAAGGCGAGAACTTTGATA+AGG + chr8_3:12219154-12219173 None:intergenic 35.0%
! AATCGAATCGAGGAGAATTT+TGG - chr8_3:12219304-12219323 Msa1277080:CDS 35.0%
!!! ATTTTGTTGATGGGTTTGAG+TGG - chr8_3:12219327-12219346 Msa1277080:CDS 35.0%
ATGGGTTTGAGTGGAAATAT+GGG - chr8_3:12219336-12219355 Msa1277080:CDS 35.0%
CATTATAGAACTGGGAATGT+GGG - chr8_3:12219371-12219390 Msa1277080:CDS 35.0%
ATTATAGAACTGGGAATGTG+GGG - chr8_3:12219372-12219391 Msa1277080:CDS 35.0%
!! TGAGTTTGCTTTTGTTGTAG+AGG - chr8_3:12219439-12219458 Msa1277080:CDS 35.0%
AATGTAGCACCAAAAATGGA+AGG + chr8_3:12219548-12219567 None:intergenic 35.0%
TTGCAATGTAGCACCAAAAA+TGG + chr8_3:12219552-12219571 None:intergenic 35.0%
!! AGTAGACTTGTTACAATGGT+TGG - chr8_3:12219628-12219647 Msa1277080:CDS 35.0%
GCTCTATTTGAGAGTTTGTA+GGG - chr8_3:12219966-12219985 Msa1277080:CDS 35.0%
CTCTATTTGAGAGTTTGTAG+GGG - chr8_3:12219967-12219986 Msa1277080:CDS 35.0%
GTACACTCCAATAAAGAGAT+TGG - chr8_3:12220043-12220062 Msa1277080:CDS 35.0%
GTTAGCTATCAACAAACAAG+CGG + chr8_3:12220229-12220248 None:intergenic 35.0%
!! TGTTTGTTGATAGCTAACAG+AGG - chr8_3:12220231-12220250 Msa1277080:intron 35.0%
TTAAAACGTTTCACAAGGGT+TGG - chr8_3:12220521-12220540 Msa1277080:intron 35.0%
!! TGCATTGATGAGTCTTTTGT+AGG - chr8_3:12220582-12220601 Msa1277080:intron 35.0%
! TCTTTTGTAGGACAAGAACT+TGG - chr8_3:12220594-12220613 Msa1277080:intron 35.0%
TTCAATGGACAGTAGAATAC+AGG - chr8_3:12220636-12220655 Msa1277080:intron 35.0%
TCAATGGACAGTAGAATACA+GGG - chr8_3:12220637-12220656 Msa1277080:intron 35.0%
GTCTTAAAACTCGTGAATCT+AGG + chr8_3:12220813-12220832 None:intergenic 35.0%
! TTATCATTTTAGGCATGTGC+AGG + chr8_3:12220871-12220890 None:intergenic 35.0%
TCCATAATACCATGGATGAA+TGG - chr8_3:12221018-12221037 Msa1277080:intron 35.0%
! AGTTGATGTTTATTGCACCA+CGG + chr8_3:12221051-12221070 None:intergenic 35.0%
!! ACAGGTTTGTTCATGTTTTC+TGG + chr8_3:12221200-12221219 None:intergenic 35.0%
!! TTTCAAGTTGCAAGAACAAC+AGG + chr8_3:12221218-12221237 None:intergenic 35.0%
AGTTTCAGCTCATTAGAGTT+GGG + chr8_3:12221279-12221298 None:intergenic 35.0%
AAGTTTCAGCTCATTAGAGT+TGG + chr8_3:12221280-12221299 None:intergenic 35.0%
!!! TTGAACCCTTTTTTGTGCTA+TGG - chr8_3:12221499-12221518 Msa1277080:intron 35.0%
! ACCAAGTTTAACCCCATTTT+TGG - chr8_3:12221553-12221572 Msa1277080:intron 35.0%
ACCAAAAATGGGGTTAAACT+TGG + chr8_3:12221557-12221576 None:intergenic 35.0%
!! TATAATTGGTTTCTGGTTGC+AGG - chr8_3:12221666-12221685 Msa1277080:intron 35.0%
AAATTCTCTTTCCAAAGCCA+TGG - chr8_3:12221763-12221782 Msa1277080:intron 35.0%
GTTGTGGTATGACAAAAACA+AGG - chr8_3:12221797-12221816 Msa1277080:intron 35.0%
GTATGACAAAAACAAGGCAA+AGG - chr8_3:12221803-12221822 Msa1277080:intron 35.0%
GGCAATAAACCATTTCTTGA+GGG - chr8_3:12221825-12221844 Msa1277080:intron 35.0%
GCAATAAACCATTTCTTGAG+GGG - chr8_3:12221826-12221845 Msa1277080:intron 35.0%
!! TACAGGTTGGTATAAGAAGA+TGG - chr8_3:12221970-12221989 Msa1277080:intron 35.0%
!! ACAGGTTGGTATAAGAAGAT+GGG - chr8_3:12221971-12221990 Msa1277080:intron 35.0%
AGATCAACTAAGGAATCAGA+TGG + chr8_3:12222412-12222431 None:intergenic 35.0%
GACCAATTTGTAACTAGCAT+TGG - chr8_3:12222463-12222482 Msa1277080:intron 35.0%
TCGAGAATTGAGACTATCAA+TGG - chr8_3:12222511-12222530 Msa1277080:CDS 35.0%
TGAGACTATCAATGGTATTG+TGG - chr8_3:12222519-12222538 Msa1277080:CDS 35.0%
!!! TATAACACATGGGTTTTGGA+TGG - chr8_3:12222580-12222599 Msa1277080:CDS 35.0%
!!! ATAACACATGGGTTTTGGAT+GGG - chr8_3:12222581-12222600 Msa1277080:CDS 35.0%
!!! AGAGTTGATGAGACTTCTTT+TGG - chr8_3:12222856-12222875 Msa1277080:CDS 35.0%
! ACTTCTTTTGGCATGAAGAT+TGG - chr8_3:12222868-12222887 Msa1277080:CDS 35.0%
TTCTATAGGGGATAGAAAGT+TGG - chr8_3:12222912-12222931 Msa1277080:CDS 35.0%
!! GGGATAGAAAGTTGGTATAT+TGG - chr8_3:12222920-12222939 Msa1277080:CDS 35.0%
! CAAATTAAGTTGCCAATGTG+AGG - chr8_3:12223178-12223197 Msa1277080:five_prime_UTR 35.0%
CTACACTACTAAGGTGTAAG+TGG + chr8_3:12218834-12218853 None:intergenic 40.0%
GAAACATTGCTTGCAGGTTA+GGG + chr8_3:12218945-12218964 None:intergenic 40.0%
AGAAACATTGCTTGCAGGTT+AGG + chr8_3:12218946-12218965 None:intergenic 40.0%
GATTCAGAAACATTGCTTGC+AGG + chr8_3:12218951-12218970 None:intergenic 40.0%
GGGTGATGAAGATTATTGGA+AGG + chr8_3:12218998-12219017 None:intergenic 40.0%
GATCAATGTAAACATGGAGG+TGG + chr8_3:12219244-12219263 None:intergenic 40.0%
GACATCGGAATTGTTCAAAG+GGG + chr8_3:12219273-12219292 None:intergenic 40.0%
CGACATCGGAATTGTTCAAA+GGG + chr8_3:12219274-12219293 None:intergenic 40.0%
TCGACATCGGAATTGTTCAA+AGG + chr8_3:12219275-12219294 None:intergenic 40.0%
! GATGGGTTTGAGTGGAAATA+TGG - chr8_3:12219335-12219354 Msa1277080:CDS 40.0%
TGGGTTTGAGTGGAAATATG+GGG - chr8_3:12219337-12219356 Msa1277080:CDS 40.0%
TGAGTGGAAATATGGGGAAA+AGG - chr8_3:12219343-12219362 Msa1277080:CDS 40.0%
AAGGTGGTGCATTATAGAAC+TGG - chr8_3:12219362-12219381 Msa1277080:CDS 40.0%
AGGTGGTGCATTATAGAACT+GGG - chr8_3:12219363-12219382 Msa1277080:CDS 40.0%
GCATTATAGAACTGGGAATG+TGG - chr8_3:12219370-12219389 Msa1277080:CDS 40.0%
! TGTTGTAGAGGATGATTTGG+AGG - chr8_3:12219451-12219470 Msa1277080:CDS 40.0%
TGTGATTGAGACTGCATCAT+CGG + chr8_3:12219747-12219766 None:intergenic 40.0%
GGACCCTTATAAAAAAGCCT+TGG - chr8_3:12219832-12219851 Msa1277080:CDS 40.0%
TAGATAGGGATGTCTACAAC+AGG - chr8_3:12219901-12219920 Msa1277080:CDS 40.0%
AGAGCCTAAAATTCCTGACA+CGG + chr8_3:12219951-12219970 None:intergenic 40.0%
GGCTCTATTTGAGAGTTTGT+AGG - chr8_3:12219965-12219984 Msa1277080:CDS 40.0%
TATTTGAGAGTTTGTAGGGG+AGG - chr8_3:12219970-12219989 Msa1277080:CDS 40.0%
ATTTGAGAGTTTGTAGGGGA+GGG - chr8_3:12219971-12219990 Msa1277080:CDS 40.0%
GGTTTGACGTTGGATGAATT+TGG - chr8_3:12220252-12220271 Msa1277080:CDS 40.0%
TTTGGTCAGTGAGTACTTCA+TGG - chr8_3:12220270-12220289 Msa1277080:CDS 40.0%
AGTGAGTACTTCATGGATGA+GGG - chr8_3:12220277-12220296 Msa1277080:CDS 40.0%
! TGCTAATGATATCTGGGGTA+AGG - chr8_3:12220480-12220499 Msa1277080:intron 40.0%
ATGAGAAGCCAGTGTTTCAA+TGG - chr8_3:12220621-12220640 Msa1277080:intron 40.0%
TCTACTGTCCATTGAAACAC+TGG + chr8_3:12220632-12220651 None:intergenic 40.0%
GTCCTACAAGTCTACAATCT+AGG - chr8_3:12220717-12220736 Msa1277080:intron 40.0%
TGCCTAGATTGTAGACTTGT+AGG + chr8_3:12220722-12220741 None:intergenic 40.0%
GAGTCTATGTGAGTTTAGCT+AGG + chr8_3:12220783-12220802 None:intergenic 40.0%
TACCTTGTACAAGACGAACA+AGG - chr8_3:12220937-12220956 Msa1277080:intron 40.0%
GCCATTCATCCATGGTATTA+TGG + chr8_3:12221022-12221041 None:intergenic 40.0%
AATACCATGGATGAATGGCA+AGG - chr8_3:12221023-12221042 Msa1277080:intron 40.0%
! AAAGGCGTAAGATGCATCTA+TGG + chr8_3:12221095-12221114 None:intergenic 40.0%
TTGCGTATGGGTTCACATAA+AGG + chr8_3:12221113-12221132 None:intergenic 40.0%
TTATGTGAACCCATACGCAA+AGG - chr8_3:12221113-12221132 Msa1277080:intron 40.0%
CATTTACCTCCTTTGCGTAT+GGG + chr8_3:12221125-12221144 None:intergenic 40.0%
TCATTTACCTCCTTTGCGTA+TGG + chr8_3:12221126-12221145 None:intergenic 40.0%
!! TTCGTGACTTGGTTTGTCTT+AGG + chr8_3:12221177-12221196 None:intergenic 40.0%
!!! ATGTTTTCTGGTTCGTGACT+TGG + chr8_3:12221188-12221207 None:intergenic 40.0%
!! AGAGTAAAGGATGGTGGAAT+AGG + chr8_3:12221341-12221360 None:intergenic 40.0%
CCTGACCATAGCACAAAAAA+GGG + chr8_3:12221507-12221526 None:intergenic 40.0%
ACCTGACCATAGCACAAAAA+AGG + chr8_3:12221508-12221527 None:intergenic 40.0%
!! TTTCTGGTTGCAGGTAAACA+TGG - chr8_3:12221675-12221694 Msa1277080:intron 40.0%
! CTTTTCTTGTACCAGTTGGT+TGG - chr8_3:12221729-12221748 Msa1277080:intron 40.0%
GGGCAATAAACCATTTCTTG+AGG - chr8_3:12221824-12221843 Msa1277080:intron 40.0%
TAAACCATTTCTTGAGGGGA+TGG - chr8_3:12221830-12221849 Msa1277080:intron 40.0%
ATTACCATCCCCTCAAGAAA+TGG + chr8_3:12221837-12221856 None:intergenic 40.0%
! TTTTACAGGTGACTACAGGT+TGG - chr8_3:12221957-12221976 Msa1277080:intron 40.0%
!! CAGGTTGGTATAAGAAGATG+GGG - chr8_3:12221972-12221991 Msa1277080:intron 40.0%
!! AGGTTGGTATAAGAAGATGG+GGG - chr8_3:12221973-12221992 Msa1277080:intron 40.0%
TGCTCTCTCGTGCAAAAAAT+TGG + chr8_3:12222062-12222081 None:intergenic 40.0%
AGAGATGCTGGAGTAAACTA+CGG - chr8_3:12222097-12222116 Msa1277080:intron 40.0%
ACCTGATTCTCAGTTACTAG+AGG - chr8_3:12222132-12222151 Msa1277080:intron 40.0%
TCCTCTAGTAACTGAGAATC+AGG + chr8_3:12222136-12222155 None:intergenic 40.0%
! TTGTTTCAGAGAAGTACGTC+CGG - chr8_3:12222219-12222238 Msa1277080:intron 40.0%
CAACTAAGGAATCAGATGGA+GGG + chr8_3:12222408-12222427 None:intergenic 40.0%
TCAACTAAGGAATCAGATGG+AGG + chr8_3:12222409-12222428 None:intergenic 40.0%
ATTCCTTAGTTGATCTGTCC+AGG - chr8_3:12222416-12222435 Msa1277080:intron 40.0%
TATCAATGGTATTGTGGCCA+AGG - chr8_3:12222525-12222544 Msa1277080:CDS 40.0%
CTTCTGTGTTGCAAAAAACG+TGG - chr8_3:12222657-12222676 Msa1277080:CDS 40.0%
CATCGTCTAGTGAGAAAATC+TGG - chr8_3:12222701-12222720 Msa1277080:CDS 40.0%
AGTGAGAAAATCTGGACCAA+TGG - chr8_3:12222709-12222728 Msa1277080:CDS 40.0%
! AATTTTCGACACGAAGCCAT+TGG + chr8_3:12222728-12222747 None:intergenic 40.0%
AGAAAAGACTCATCAACCCA+AGG - chr8_3:12222772-12222791 Msa1277080:CDS 40.0%
CACAAAACTTAGGCTACCTT+GGG + chr8_3:12222791-12222810 None:intergenic 40.0%
ACACAAAACTTAGGCTACCT+TGG + chr8_3:12222792-12222811 None:intergenic 40.0%
GGTATATTGGTCAACTGAGA+TGG - chr8_3:12222933-12222952 Msa1277080:CDS 40.0%
! AGCTGGAATCGATTCAGAAA+CGG - chr8_3:12222956-12222975 Msa1277080:CDS 40.0%
GGCTCAAAGAGTTGAATTTG+TGG - chr8_3:12222977-12222996 Msa1277080:CDS 40.0%
GTCTATCTTAAGCCTCACAT+TGG + chr8_3:12223193-12223212 None:intergenic 40.0%
ATGTGAGGCTTAAGATAGAC+TGG - chr8_3:12223193-12223212 Msa1277080:five_prime_UTR 40.0%
!! GCGAGTTGAATTTTGTGTTC+AGG - chr8_3:12223225-12223244 Msa1277080:five_prime_UTR 40.0%
CAGGACAAGCTACACTACTA+AGG + chr8_3:12218843-12218862 None:intergenic 45.0%
GTGGAAATATGGGGAAAAGG+TGG - chr8_3:12219346-12219365 Msa1277080:CDS 45.0%
GCAAACTCATCATCTGAACC+AGG + chr8_3:12219428-12219447 None:intergenic 45.0%
GGATGTCTACAACAGGAGTT+TGG - chr8_3:12219908-12219927 Msa1277080:CDS 45.0%
!! TTTGTTGATTCCTCCGTGTC+AGG - chr8_3:12219935-12219954 Msa1277080:CDS 45.0%
! TCCTCCGTGTCAGGAATTTT+AGG - chr8_3:12219944-12219963 Msa1277080:CDS 45.0%
TTTGAGAGTTTGTAGGGGAG+GGG - chr8_3:12219972-12219991 Msa1277080:CDS 45.0%
AGCTAACAGAGGTTTGACGT+TGG - chr8_3:12220242-12220261 Msa1277080:intron 45.0%
CAGTGAGTACTTCATGGATG+AGG - chr8_3:12220276-12220295 Msa1277080:CDS 45.0%
CATGTTGGCCATTGTTTGTC+TGG - chr8_3:12220405-12220424 Msa1277080:intron 45.0%
! TGCCTTGTTCGTCTTGTACA+AGG + chr8_3:12220942-12220961 None:intergenic 45.0%
AGCTGAATCCAGCTCCAATA+AGG - chr8_3:12221310-12221329 Msa1277080:intron 45.0%
GCTGAATCCAGCTCCAATAA+GGG - chr8_3:12221311-12221330 Msa1277080:intron 45.0%
CTGAATCCAGCTCCAATAAG+GGG - chr8_3:12221312-12221331 Msa1277080:intron 45.0%
TGGAATAGGTCTCCCCTTAT+TGG + chr8_3:12221327-12221346 None:intergenic 45.0%
!!! CCCTTTTTTGTGCTATGGTC+AGG - chr8_3:12221504-12221523 Msa1277080:intron 45.0%
! TTTTGTGCTATGGTCAGGTC+TGG - chr8_3:12221509-12221528 Msa1277080:intron 45.0%
TGGTCGAATAGCGACAAAAG+TGG - chr8_3:12221529-12221548 Msa1277080:intron 45.0%
ACATGGCAACAAGTTGCAGT+TGG - chr8_3:12221692-12221711 Msa1277080:intron 45.0%
! ACGGCTTTTCTTGTACCAGT+TGG - chr8_3:12221725-12221744 Msa1277080:intron 45.0%
CTGAACTCTTTCCATGGCTT+TGG + chr8_3:12221777-12221796 None:intergenic 45.0%
CAAAGCCATGGAAAGAGTTC+AGG - chr8_3:12221775-12221794 Msa1277080:intron 45.0%
CACAACCTGAACTCTTTCCA+TGG + chr8_3:12221783-12221802 None:intergenic 45.0%
!! CATGGAAAGAGTTCAGGTTG+TGG - chr8_3:12221781-12221800 Msa1277080:intron 45.0%
AGAAGATGGGGGAGAGAATA+TGG - chr8_3:12221984-12222003 Msa1277080:intron 45.0%
GAGATGCTGGAGTAAACTAC+GGG - chr8_3:12222098-12222117 Msa1277080:intron 45.0%
GTAAACTACGGGAAAACTGC+TGG - chr8_3:12222109-12222128 Msa1277080:intron 45.0%
! TGTTTCAGAGAAGTACGTCC+GGG - chr8_3:12222220-12222239 Msa1277080:intron 45.0%
CTTAGTTGATCTGTCCAGGA+GGG - chr8_3:12222420-12222439 Msa1277080:intron 45.0%
TTAGTTGATCTGTCCAGGAG+GGG - chr8_3:12222421-12222440 Msa1277080:intron 45.0%
TCTAGACTCGAGCAATACGT+CGG + chr8_3:12222623-12222642 None:intergenic 45.0%
GCAACACAGAAGTCGTAGTT+GGG + chr8_3:12222649-12222668 None:intergenic 45.0%
TGCAACACAGAAGTCGTAGT+TGG + chr8_3:12222650-12222669 None:intergenic 45.0%
CGTGTCGAAAATTGTAGCCA+TGG - chr8_3:12222735-12222754 Msa1277080:CDS 45.0%
! GTCTTTTCTCCCCAAAGAGT+CGG + chr8_3:12222761-12222780 None:intergenic 45.0%
! GGCATGAAGATTGGTTCAGA+TGG - chr8_3:12222877-12222896 Msa1277080:CDS 45.0%
!!! ATTTTTAAATATAAGATTAT+TGG - chr8_3:12220093-12220112 Msa1277080:CDS 5.0%
!!! TTATTTTTTTCTTTAAAATA+TGG - chr8_3:12220203-12220222 Msa1277080:intron 5.0%
!!! AAAAAAAATATTATCATTTT+AGG + chr8_3:12220881-12220900 None:intergenic 5.0%
!!! TATTTTTTTTTTTTTTGAAA+CGG - chr8_3:12220891-12220910 Msa1277080:intron 5.0%
AACGGAGTCAAGGCGGTTAA+AGG + chr8_3:12219171-12219190 None:intergenic 50.0%
GTGCTACATTGCAACGTGCA+AGG - chr8_3:12219558-12219577 Msa1277080:CDS 50.0%
! CAACGTGCAAGGTTTGTTCC+AGG - chr8_3:12219569-12219588 Msa1277080:CDS 50.0%
GTCCATAGCTGTGATCTCGA+CGG + chr8_3:12219816-12219835 None:intergenic 50.0%
GCCTAAAATTCCTGACACGG+AGG + chr8_3:12219948-12219967 None:intergenic 50.0%
GGTTTGATCCTCCGTTGTAG+TGG - chr8_3:12220542-12220561 Msa1277080:intron 50.0%
TGTGAACCCATACGCAAAGG+AGG - chr8_3:12221116-12221135 Msa1277080:intron 50.0%
GGTTTGTCTTAGGAGCCACA+GGG + chr8_3:12221167-12221186 None:intergenic 50.0%
! TGGTTTGTCTTAGGAGCCAC+AGG + chr8_3:12221168-12221187 None:intergenic 50.0%
TGCAGTTGGATGACCAGACA+CGG - chr8_3:12221706-12221725 Msa1277080:intron 50.0%
GGTACAAGAAAAGCCGTGTC+TGG + chr8_3:12221722-12221741 None:intergenic 50.0%
! TGTACCAGTTGGTTGGTACG+TGG - chr8_3:12221736-12221755 Msa1277080:intron 50.0%
! GTACCAGTTGGTTGGTACGT+GGG - chr8_3:12221737-12221756 Msa1277080:intron 50.0%
! TACCAGTTGGTTGGTACGTG+GGG - chr8_3:12221738-12221757 Msa1277080:intron 50.0%
GGGAGAGAATATGGACACCT+TGG - chr8_3:12221993-12222012 Msa1277080:intron 50.0%
AGTGTCTCTCACAGAGATGC+TGG - chr8_3:12222085-12222104 Msa1277080:intron 50.0%
GAGTTCCTCACAAACCTTCC+CGG + chr8_3:12222241-12222260 None:intergenic 50.0%
GTGAGGAACTCCGAAGAACT+TGG - chr8_3:12222250-12222269 Msa1277080:intron 50.0%
CCTCCTGGACAGATCAACTA+AGG + chr8_3:12222422-12222441 None:intergenic 50.0%
CCTTAGTTGATCTGTCCAGG+AGG - chr8_3:12222419-12222438 Msa1277080:intron 50.0%
TCGAGCAATACGTCGGAAGT+GGG + chr8_3:12222616-12222635 None:intergenic 50.0%
TTGGTCAACTGAGATGGAGC+TGG - chr8_3:12222939-12222958 Msa1277080:CDS 50.0%
TGAGTTATCCTGCACTGCTG+TGG - chr8_3:12223011-12223030 Msa1277080:CDS 50.0%
AACGGGAAACGGAGTCAAGG+CGG + chr8_3:12219178-12219197 None:intergenic 55.0%
AATCTGCGGTAGCGAGGGAA+CGG + chr8_3:12219205-12219224 None:intergenic 55.0%
GAGGTAATCTGCGGTAGCGA+GGG + chr8_3:12219210-12219229 None:intergenic 55.0%
CTCGCTACCGCAGATTACCT+CGG - chr8_3:12219209-12219228 Msa1277080:CDS 55.0%
AACTGGGAATGTGGGGTTGC+AGG - chr8_3:12219379-12219398 Msa1277080:CDS 55.0%
TGCCGTCGAGATCACAGCTA+TGG - chr8_3:12219811-12219830 Msa1277080:CDS 55.0%
TTTGTAGGGGAGGGGTGGAA+AGG - chr8_3:12219980-12219999 Msa1277080:CDS 55.0%
TTGTAGGGGAGGGGTGGAAA+GGG - chr8_3:12219981-12220000 Msa1277080:CDS 55.0%
ATCCTCCGTTGTAGTGGCAG+TGG - chr8_3:12220548-12220567 Msa1277080:intron 55.0%
ACCTGCCACTGCCACTACAA+CGG + chr8_3:12220556-12220575 None:intergenic 55.0%
GGAGCCTTGCCATTCATCCA+TGG + chr8_3:12221030-12221049 None:intergenic 55.0%
CGTACTGAGTCTCAACCCTG+TGG - chr8_3:12221149-12221168 Msa1277080:intron 55.0%
AGGTCTCCCCTTATTGGAGC+TGG + chr8_3:12221321-12221340 None:intergenic 55.0%
! ACCAGTTGGTTGGTACGTGG+GGG - chr8_3:12221739-12221758 Msa1277080:intron 55.0%
! TCAGAGAAGTACGTCCGGGA+AGG - chr8_3:12222224-12222243 Msa1277080:intron 55.0%
TACGTCCGGGAAGGTTTGTG+AGG - chr8_3:12222233-12222252 Msa1277080:intron 55.0%
GATTACAGGATGTCCCCTCC+TGG + chr8_3:12222437-12222456 None:intergenic 55.0%
CTCGAGCAATACGTCGGAAG+TGG + chr8_3:12222617-12222636 None:intergenic 55.0%
! TGTAGCCATGGCCGACTCTT+TGG - chr8_3:12222747-12222766 Msa1277080:CDS 55.0%
! GTAGCCATGGCCGACTCTTT+GGG - chr8_3:12222748-12222767 Msa1277080:CDS 55.0%
! TAGCCATGGCCGACTCTTTG+GGG - chr8_3:12222749-12222768 Msa1277080:CDS 55.0%
GTGACAAACCACAGCAGTGC+AGG + chr8_3:12223022-12223041 None:intergenic 55.0%
GGCAACGGGAAACGGAGTCA+AGG + chr8_3:12219181-12219200 None:intergenic 60.0%
GGAACGGAGGCAACGGGAAA+CGG + chr8_3:12219189-12219208 None:intergenic 60.0%
TAGCGAGGGAACGGAGGCAA+CGG + chr8_3:12219196-12219215 None:intergenic 60.0%
CGAGGTAATCTGCGGTAGCG+AGG + chr8_3:12219211-12219230 None:intergenic 60.0%
GCGATCGCCGAGGTAATCTG+CGG + chr8_3:12219219-12219238 None:intergenic 60.0%
ATGTGGGGTTGCAGGCACAG+TGG - chr8_3:12219387-12219406 Msa1277080:CDS 60.0%
GTTGCAGGCACAGTGGTTGG+AGG - chr8_3:12219394-12219413 Msa1277080:CDS 60.0%
AGGCACAGTGGTTGGAGGCA+TGG - chr8_3:12219399-12219418 Msa1277080:CDS 60.0%
! CACAGTGGTTGGAGGCATGG+TGG - chr8_3:12219402-12219421 Msa1277080:CDS 60.0%
GAGAGTTTGTAGGGGAGGGG+TGG - chr8_3:12219975-12219994 Msa1277080:CDS 60.0%
! AGGGGTGGAAAGGGCTTTGG+CGG - chr8_3:12219990-12220009 Msa1277080:CDS 60.0%
! GTGGAAAGGGCTTTGGCGGA+AGG - chr8_3:12219994-12220013 Msa1277080:CDS 60.0%
CTTTGGCGGAAGGCGAAGAG+AGG - chr8_3:12220004-12220023 Msa1277080:CDS 60.0%
TGCCACTGCCACTACAACGG+AGG + chr8_3:12220553-12220572 None:intergenic 60.0%
TCCGTTGTAGTGGCAGTGGC+AGG - chr8_3:12220552-12220571 Msa1277080:intron 60.0%
GTTGTAGTGGCAGTGGCAGG+TGG - chr8_3:12220555-12220574 Msa1277080:intron 60.0%
GGATGAATGGCAAGGCTCCG+TGG - chr8_3:12221031-12221050 Msa1277080:intron 60.0%
TCTCCCCAAAGAGTCGGCCA+TGG + chr8_3:12222755-12222774 None:intergenic 60.0%
AGCGAGGGAACGGAGGCAAC+GGG + chr8_3:12219195-12219214 None:intergenic 65.0%
GGGGTTGCAGGCACAGTGGT+TGG - chr8_3:12219391-12219410 Msa1277080:CDS 65.0%
! TGGTTGGAGGCATGGTGGCC+TGG - chr8_3:12219407-12219426 Msa1277080:CDS 65.0%
GGGAGGGGTGGAAAGGGCTT+TGG - chr8_3:12219987-12220006 Msa1277080:CDS 65.0%
GCCCCCACGTACCAACCAAC+TGG + chr8_3:12221743-12221762 None:intergenic 65.0%
CTGCGGTAGCGAGGGAACGG+AGG + chr8_3:12219202-12219221 None:intergenic 70.0%
GGAGGTGGACGCGATCGCCG+AGG + chr8_3:12219229-12219248 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 12218818 12223278 12218818 ID=Msa1277080;Name=Msa1277080
chr8_3 mRNA 12218818 12223278 12218818 ID=Msa1277080-mRNA-1;Parent=Msa1277080;Name=Msa1277080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|3|228|622
chr8_3 exon 12218818 12220131 12218818 ID=Msa1277080-mRNA-1:exon:4889;Parent=Msa1277080-mRNA-1
chr8_3 exon 12220245 12220408 12220245 ID=Msa1277080-mRNA-1:exon:4888;Parent=Msa1277080-mRNA-1
chr8_3 exon 12222506 12223278 12222506 ID=Msa1277080-mRNA-1:exon:4887;Parent=Msa1277080-mRNA-1
chr8_3 five_prime_UTR 12223125 12223278 12223125 ID=Msa1277080-mRNA-1:five_prime_utr;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12222506 12223124 12222506 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12220245 12220408 12220245 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12219046 12220131 12219046 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 three_prime_UTR 12218818 12219045 12218818 ID=Msa1277080-mRNA-1:three_prime_utr;Parent=Msa1277080-mRNA-1
Gene Sequence

>Msa1277080

ATGGTGGGACCCAAAAAGCACTTCCTTCCAATAATCTTCATCACCCTCATTGCATTCATCTTCTACACTTTTCACAACTCTTCTCTCCCATCTTCAATCACCGAATCTAACCCTAATTTCACACTAAAATCCCCAATTCCAAAAAACCCTAATTCAACAATTTCCCCCAATTTTACTTTCCTTATCAAAGTTCTCGCCTTTAACCGCCTTGACTCCGTTTCCCGTTGCCTCCGTTCCCTCGCTACCGCAGATTACCTCGGCGATCGCGTCCACCTCCATGTTTACATTGATCATTTTACCCCTTTGAACAATTCCGATGTCGATTTGAAATTAATCGAATCGAGGAGAATTTTGGATTTTGTTGATGGGTTTGAGTGGAAATATGGGGAAAAGGTGGTGCATTATAGAACTGGGAATGTGGGGTTGCAGGCACAGTGGTTGGAGGCATGGTGGCCTGGTTCAGATGATGAGTTTGCTTTTGTTGTAGAGGATGATTTGGAGGTTTCTTCGCTTTATTACGAGTATATTAAAGCGTTGATTGTGAATTTCTATTATAATGGTTCTAATTATAGTCCTTCCATTTTTGGTGCTACATTGCAACGTGCAAGGTTTGTTCCAGGTAAACATGGCAACAAGTTGCAGTTGGATGACCAGACACGGCTTTTCTTGTACCAGTTGGTTGGTACGTGGGGGCAAATTCTCTTTCCAAAGCCATGGAAAGAGTTCAGGTTGTGGTATGACAAAAACAAGGCAAAGGGCAATAAACCATTTCTTGAGGGGATGGTGACTACAGGTTGGTATAAGAAGATGGGGGAGAGAATATGGACACCTTGGTTCATCAAGTTTATTCAATCCCATGGTTACTTTAATATCTATGCCAATTTTTTGCACGAGAGAGCATTAAGTGTCTCTCACAGAGATGCTGGAGTAAACTACGGGAAAACTGCTGGACCTGATTCTCAGTTACTAGAGGAAAGATCCCTAGACTTCAATATTTTGGAAATGCAGCCTTTGAGTAGTTTAAAATGGTTTGACTTTTGTTTCAGAGAAGTACGTCCGGGAAGGTTTGTGAGGAACTCCGAAGAACTTGGAACTTTACTTCACTCTATGCAGAAACAAGATAGTATCTTCTTAGTAGATCTTTTAGGGGTATCAGATGCTGTAGTAAGAAACTTATTATGCAACTTTGAGAGGCTAAATATAAGGAATTATATACTTATGGGCCCTCCATCTGATTCCTTAGTTGATCTGTCCAGGAGGGGACATCCTGTAATCAATGTAGACCAATTTGTAACTAGCATTGGAAATAATAAATTGACTTTGCAAGGTTCGAGAATTGAGACTATCAATGGTATTGTGGCCAAGGCTTATGTAATTAAAAAGTTTATCGAAAGTAAGTATAACACATGGGTTTTGGATGGGAGCATGCTTCCCACTTCCGACGTATTGCTCGAGTCTAGAGATCCCAACTACGACTTCTGTGTTGCAAAAAACGTGGAACTGTTTTACGCTGAAAGCTCATCGTCTAGTGAGAAAATCTGGACCAATGGCTTCGTGTCGAAAATTGTAGCCATGGCCGACTCTTTGGGGAGAAAAGACTCATCAACCCAAGGTAGCCTAAGTTTTGTGTATATTGTAACAAAATTATTGGAACAGAATGGTGCAAGTATCAGAAGAGTTGATGAGACTTCTTTTGGCATGAAGATTGGTTCAGATGGTGTTAGTAAATCTTCTATAGGGGATAGAAAGTTGGTATATTGGTCAACTGAGATGGAGCTGGAATCGATTCAGAAACGGCTCAAAGAGTTGAATTTGTGGAGTATAGACAGTGAGTTATCCTGCACTGCTGTGGTTTGTCACAAGTCATAG

Protein sequence

>Msa1277080

MVGPKKHFLPIIFITLIAFIFYTFHNSSLPSSITESNPNFTLKSPIPKNPNSTISPNFTFLIKVLAFNRLDSVSRCLRSLATADYLGDRVHLHVYIDHFTPLNNSDVDLKLIESRRILDFVDGFEWKYGEKVVHYRTGNVGLQAQWLEAWWPGSDDEFAFVVEDDLEVSSLYYEYIKALIVNFYYNGSNYSPSIFGATLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDKNKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSHGYFNIYANFLHERALSVSHRDAGVNYGKTAGPDSQLLEERSLDFNILEMQPLSSLKWFDFCFREVRPGRFVRNSEELGTLLHSMQKQDSIFLVDLLGVSDAVVRNLLCNFERLNIRNYILMGPPSDSLVDLSRRGHPVINVDQFVTSIGNNKLTLQGSRIETINGIVAKAYVIKKFIESKYNTWVLDGSMLPTSDVLLESRDPNYDFCVAKNVELFYAESSSSSEKIWTNGFVSKIVAMADSLGRKDSSTQGSLSFVYIVTKLLEQNGASIRRVDETSFGMKIGSDGVSKSSIGDRKLVYWSTEMELESIQKRLKELNLWSIDSELSCTAVVCHKS*