AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277080


Find 168 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr8_3 gene 12218818 12223278 12218818 ID=Msa1277080;Name=Msa1277080
chr8_3 mRNA 12218818 12223278 12218818 ID=Msa1277080-mRNA-1;Parent=Msa1277080;Name=Msa1277080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|3|228|622
chr8_3 exon 12218818 12220131 12218818 ID=Msa1277080-mRNA-1:exon:4889;Parent=Msa1277080-mRNA-1
chr8_3 exon 12220245 12220408 12220245 ID=Msa1277080-mRNA-1:exon:4888;Parent=Msa1277080-mRNA-1
chr8_3 exon 12222506 12223278 12222506 ID=Msa1277080-mRNA-1:exon:4887;Parent=Msa1277080-mRNA-1
chr8_3 five_prime_UTR 12223125 12223278 12223125 ID=Msa1277080-mRNA-1:five_prime_utr;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12222506 12223124 12222506 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12220245 12220408 12220245 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 CDS 12219046 12220131 12219046 ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1
chr8_3 three_prime_UTR 12218818 12219045 12218818 ID=Msa1277080-mRNA-1:three_prime_utr;Parent=Msa1277080-mRNA-1
Gene Sequence

>Msa1277080

ATGGTGGGACCCAAAAAGCACTTCCTTCCAATAATCTTCATCACCCTCATTGCATTCATCTTCTACACTTTTCACAACTCTTCTCTCCCATCTTCAATCACCGAATCTAACCCTAATTTCACACTAAAATCCCCAATTCCAAAAAACCCTAATTCAACAATTTCCCCCAATTTTACTTTCCTTATCAAAGTTCTCGCCTTTAACCGCCTTGACTCCGTTTCCCGTTGCCTCCGTTCCCTCGCTACCGCAGATTACCTCGGCGATCGCGTCCACCTCCATGTTTACATTGATCATTTTACCCCTTTGAACAATTCCGATGTCGATTTGAAATTAATCGAATCGAGGAGAATTTTGGATTTTGTTGATGGGTTTGAGTGGAAATATGGGGAAAAGGTGGTGCATTATAGAACTGGGAATGTGGGGTTGCAGGCACAGTGGTTGGAGGCATGGTGGCCTGGTTCAGATGATGAGTTTGCTTTTGTTGTAGAGGATGATTTGGAGGTTTCTTCGCTTTATTACGAGTATATTAAAGCGTTGATTGTGAATTTCTATTATAATGGTTCTAATTATAGTCCTTCCATTTTTGGTGCTACATTGCAACGTGCAAGGTTTGTTCCAGGTAAACATGGCAACAAGTTGCAGTTGGATGACCAGACACGGCTTTTCTTGTACCAGTTGGTTGGTACGTGGGGGCAAATTCTCTTTCCAAAGCCATGGAAAGAGTTCAGGTTGTGGTATGACAAAAACAAGGCAAAGGGCAATAAACCATTTCTTGAGGGGATGGTGACTACAGGTTGGTATAAGAAGATGGGGGAGAGAATATGGACACCTTGGTTCATCAAGTTTATTCAATCCCATGGTTACTTTAATATCTATGCCAATTTTTTGCACGAGAGAGCATTAAGTGTCTCTCACAGAGATGCTGGAGTAAACTACGGGAAAACTGCTGGACCTGATTCTCAGTTACTAGAGGAAAGATCCCTAGACTTCAATATTTTGGAAATGCAGCCTTTGAGTAGTTTAAAATGGTTTGACTTTTGTTTCAGAGAAGTACGTCCGGGAAGGTTTGTGAGGAACTCCGAAGAACTTGGAACTTTACTTCACTCTATGCAGAAACAAGATAGTATCTTCTTAGTAGATCTTTTAGGGGTATCAGATGCTGTAGTAAGAAACTTATTATGCAACTTTGAGAGGCTAAATATAAGGAATTATATACTTATGGGCCCTCCATCTGATTCCTTAGTTGATCTGTCCAGGAGGGGACATCCTGTAATCAATGTAGACCAATTTGTAACTAGCATTGGAAATAATAAATTGACTTTGCAAGGTTCGAGAATTGAGACTATCAATGGTATTGTGGCCAAGGCTTATGTAATTAAAAAGTTTATCGAAAGTAAGTATAACACATGGGTTTTGGATGGGAGCATGCTTCCCACTTCCGACGTATTGCTCGAGTCTAGAGATCCCAACTACGACTTCTGTGTTGCAAAAAACGTGGAACTGTTTTACGCTGAAAGCTCATCGTCTAGTGAGAAAATCTGGACCAATGGCTTCGTGTCGAAAATTGTAGCCATGGCCGACTCTTTGGGGAGAAAAGACTCATCAACCCAAGGTAGCCTAAGTTTTGTGTATATTGTAACAAAATTATTGGAACAGAATGGTGCAAGTATCAGAAGAGTTGATGAGACTTCTTTTGGCATGAAGATTGGTTCAGATGGTGTTAGTAAATCTTCTATAGGGGATAGAAAGTTGGTATATTGGTCAACTGAGATGGAGCTGGAATCGATTCAGAAACGGCTCAAAGAGTTGAATTTGTGGAGTATAGACAGTGAGTTATCCTGCACTGCTGTGGTTTGTCACAAGTCATAG

Protein sequence

>Msa1277080

MVGPKKHFLPIIFITLIAFIFYTFHNSSLPSSITESNPNFTLKSPIPKNPNSTISPNFTFLIKVLAFNRLDSVSRCLRSLATADYLGDRVHLHVYIDHFTPLNNSDVDLKLIESRRILDFVDGFEWKYGEKVVHYRTGNVGLQAQWLEAWWPGSDDEFAFVVEDDLEVSSLYYEYIKALIVNFYYNGSNYSPSIFGATLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDKNKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSHGYFNIYANFLHERALSVSHRDAGVNYGKTAGPDSQLLEERSLDFNILEMQPLSSLKWFDFCFREVRPGRFVRNSEELGTLLHSMQKQDSIFLVDLLGVSDAVVRNLLCNFERLNIRNYILMGPPSDSLVDLSRRGHPVINVDQFVTSIGNNKLTLQGSRIETINGIVAKAYVIKKFIESKYNTWVLDGSMLPTSDVLLESRDPNYDFCVAKNVELFYAESSSSSEKIWTNGFVSKIVAMADSLGRKDSSTQGSLSFVYIVTKLLEQNGASIRRVDETSFGMKIGSDGVSKSSIGDRKLVYWSTEMELESIQKRLKELNLWSIDSELSCTAVVCHKS*