Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1277080 | XP_003627441.1 | 92.283 | 622 | 48 | 0 | 1 | 622 | 1 | 622 | 0.0 | 1187 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000880 | Msa1277080 | 0.836879 | 7.224287e-57 | -8.615850e-47 |
Msa0001940 | Msa1277080 | 0.811415 | 7.081151e-51 | -8.615850e-47 |
Msa0001960 | Msa1277080 | 0.801057 | 1.077487e-48 | -8.615850e-47 |
Msa0002680 | Msa1277080 | 0.853341 | 2.547274e-61 | -8.615850e-47 |
Msa0002710 | Msa1277080 | 0.832604 | 8.596732e-56 | -8.615850e-47 |
Msa0003220 | Msa1277080 | 0.818642 | 1.762118e-52 | -8.615850e-47 |
Msa0003720 | Msa1277080 | 0.817009 | 4.117262e-52 | -8.615850e-47 |
Msa0007970 | Msa1277080 | 0.801515 | 8.682381e-49 | -8.615850e-47 |
Msa0012940 | Msa1277080 | 0.849761 | 2.628173e-60 | -8.615850e-47 |
Msa0015670 | Msa1277080 | 0.806205 | 9.211152e-50 | -8.615850e-47 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1277080 | MtrunA17_Chr8g0345071 | 92.283 | 622 | 48 | 0 | 1 | 622 | 1 | 622 | 0.0 | 1187 |
Msa1277080 | MtrunA17_Chr4g0028881 | 28.814 | 295 | 173 | 9 | 52 | 332 | 592 | 863 | 3.69e-29 | 123 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1277080 | AT5G12260.1 | 52.532 | 632 | 258 | 9 | 4 | 622 | 22 | 624 | 0.0 | 630 |
Msa1277080 | AT5G60700.1 | 28.986 | 276 | 159 | 7 | 52 | 311 | 324 | 578 | 6.25e-25 | 110 |
Msa1277080 | AT5G60700.2 | 28.618 | 304 | 170 | 8 | 34 | 311 | 560 | 842 | 9.66e-25 | 110 |
Find 168 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAATATGTAAGCTAAAT+TGG | 0.209161 | 8_3:+12218946 | None:intergenic |
AAATTCTCTTTCCAAAGCCA+TGG | 0.558733 | 8_3:-12220311 | Msa1277080:CDS |
AACGGAGTCAAGGCGGTTAA+AGG | 0.323886 | 8_3:+12222906 | None:intergenic |
AACGGGAAACGGAGTCAAGG+CGG | 0.705636 | 8_3:+12222899 | None:intergenic |
AACTGGGAATGTGGGGTTGC+AGG | 0.304283 | 8_3:-12222695 | Msa1277080:CDS |
AAGCAATGTTTCTGAATCAA+TGG | 0.564515 | 8_3:-12223121 | Msa1277080:exon |
AAGGTGGTGCATTATAGAAC+TGG | 0.428956 | 8_3:-12222712 | Msa1277080:CDS |
AAGTAAAGTTCCAAGTTCTT+CGG | 0.458975 | 8_3:+12219814 | None:intergenic |
AATAATAAATTGACTTTGCA+AGG | 0.420449 | 8_3:-12219587 | Msa1277080:CDS |
AATCGAATCGAGGAGAATTT+TGG | 0.214428 | 8_3:-12222770 | Msa1277080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TGTGAAATTAGGGTTAGATT+CGG | + | chr8_3:12219075-12219094 | None:intergenic | 30.0% | |
GATAAGGAAAGTAAAATTGG+GGG | + | chr8_3:12219138-12219157 | None:intergenic | 30.0% | |
AATGATCAATGTAAACATGG+AGG | + | chr8_3:12219247-12219266 | None:intergenic | 30.0% | |
AACAAAAACAAAATGGTACC+TGG | + | chr8_3:12219590-12219609 | None:intergenic | 30.0% | |
ATTACTTGAACCTAAAACCA+AGG | + | chr8_3:12219852-12219871 | None:intergenic | 30.0% | |
CCAATAACCAATCTCTTTAT+TGG | + | chr8_3:12220053-12220072 | None:intergenic | 30.0% | |
TCAGTTTATTCTTCGATATC+AGG | - | chr8_3:12220156-12220175 | Msa1277080:intron | 30.0% | |
ATAATGTATGCTTAGCATGT+TGG | - | chr8_3:12220390-12220409 | Msa1277080:intron | 30.0% | |
TTCAAAAACCAGACAAACAA+TGG | + | chr8_3:12220416-12220435 | None:intergenic | 30.0% | |
TCAATTCTGCTAATGATATC+TGG | - | chr8_3:12220473-12220492 | Msa1277080:intron | 30.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 12218818 | 12223278 | 12218818 | ID=Msa1277080;Name=Msa1277080 |
chr8_3 | mRNA | 12218818 | 12223278 | 12218818 | ID=Msa1277080-mRNA-1;Parent=Msa1277080;Name=Msa1277080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|3|228|622 |
chr8_3 | exon | 12218818 | 12220131 | 12218818 | ID=Msa1277080-mRNA-1:exon:4889;Parent=Msa1277080-mRNA-1 |
chr8_3 | exon | 12220245 | 12220408 | 12220245 | ID=Msa1277080-mRNA-1:exon:4888;Parent=Msa1277080-mRNA-1 |
chr8_3 | exon | 12222506 | 12223278 | 12222506 | ID=Msa1277080-mRNA-1:exon:4887;Parent=Msa1277080-mRNA-1 |
chr8_3 | five_prime_UTR | 12223125 | 12223278 | 12223125 | ID=Msa1277080-mRNA-1:five_prime_utr;Parent=Msa1277080-mRNA-1 |
chr8_3 | CDS | 12222506 | 12223124 | 12222506 | ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1 |
chr8_3 | CDS | 12220245 | 12220408 | 12220245 | ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1 |
chr8_3 | CDS | 12219046 | 12220131 | 12219046 | ID=Msa1277080-mRNA-1:cds;Parent=Msa1277080-mRNA-1 |
chr8_3 | three_prime_UTR | 12218818 | 12219045 | 12218818 | ID=Msa1277080-mRNA-1:three_prime_utr;Parent=Msa1277080-mRNA-1 |
Gene Sequence |
>Msa1277080 ATGGTGGGACCCAAAAAGCACTTCCTTCCAATAATCTTCATCACCCTCATTGCATTCATCTTCTACACTTTTCACAACTCTTCTCTCCCATCTTCAATCACCGAATCTAACCCTAATTTCACACTAAAATCCCCAATTCCAAAAAACCCTAATTCAACAATTTCCCCCAATTTTACTTTCCTTATCAAAGTTCTCGCCTTTAACCGCCTTGACTCCGTTTCCCGTTGCCTCCGTTCCCTCGCTACCGCAGATTACCTCGGCGATCGCGTCCACCTCCATGTTTACATTGATCATTTTACCCCTTTGAACAATTCCGATGTCGATTTGAAATTAATCGAATCGAGGAGAATTTTGGATTTTGTTGATGGGTTTGAGTGGAAATATGGGGAAAAGGTGGTGCATTATAGAACTGGGAATGTGGGGTTGCAGGCACAGTGGTTGGAGGCATGGTGGCCTGGTTCAGATGATGAGTTTGCTTTTGTTGTAGAGGATGATTTGGAGGTTTCTTCGCTTTATTACGAGTATATTAAAGCGTTGATTGTGAATTTCTATTATAATGGTTCTAATTATAGTCCTTCCATTTTTGGTGCTACATTGCAACGTGCAAGGTTTGTTCCAGGTAAACATGGCAACAAGTTGCAGTTGGATGACCAGACACGGCTTTTCTTGTACCAGTTGGTTGGTACGTGGGGGCAAATTCTCTTTCCAAAGCCATGGAAAGAGTTCAGGTTGTGGTATGACAAAAACAAGGCAAAGGGCAATAAACCATTTCTTGAGGGGATGGTGACTACAGGTTGGTATAAGAAGATGGGGGAGAGAATATGGACACCTTGGTTCATCAAGTTTATTCAATCCCATGGTTACTTTAATATCTATGCCAATTTTTTGCACGAGAGAGCATTAAGTGTCTCTCACAGAGATGCTGGAGTAAACTACGGGAAAACTGCTGGACCTGATTCTCAGTTACTAGAGGAAAGATCCCTAGACTTCAATATTTTGGAAATGCAGCCTTTGAGTAGTTTAAAATGGTTTGACTTTTGTTTCAGAGAAGTACGTCCGGGAAGGTTTGTGAGGAACTCCGAAGAACTTGGAACTTTACTTCACTCTATGCAGAAACAAGATAGTATCTTCTTAGTAGATCTTTTAGGGGTATCAGATGCTGTAGTAAGAAACTTATTATGCAACTTTGAGAGGCTAAATATAAGGAATTATATACTTATGGGCCCTCCATCTGATTCCTTAGTTGATCTGTCCAGGAGGGGACATCCTGTAATCAATGTAGACCAATTTGTAACTAGCATTGGAAATAATAAATTGACTTTGCAAGGTTCGAGAATTGAGACTATCAATGGTATTGTGGCCAAGGCTTATGTAATTAAAAAGTTTATCGAAAGTAAGTATAACACATGGGTTTTGGATGGGAGCATGCTTCCCACTTCCGACGTATTGCTCGAGTCTAGAGATCCCAACTACGACTTCTGTGTTGCAAAAAACGTGGAACTGTTTTACGCTGAAAGCTCATCGTCTAGTGAGAAAATCTGGACCAATGGCTTCGTGTCGAAAATTGTAGCCATGGCCGACTCTTTGGGGAGAAAAGACTCATCAACCCAAGGTAGCCTAAGTTTTGTGTATATTGTAACAAAATTATTGGAACAGAATGGTGCAAGTATCAGAAGAGTTGATGAGACTTCTTTTGGCATGAAGATTGGTTCAGATGGTGTTAGTAAATCTTCTATAGGGGATAGAAAGTTGGTATATTGGTCAACTGAGATGGAGCTGGAATCGATTCAGAAACGGCTCAAAGAGTTGAATTTGTGGAGTATAGACAGTGAGTTATCCTGCACTGCTGTGGTTTGTCACAAGTCATAG |
Protein sequence |
>Msa1277080 MVGPKKHFLPIIFITLIAFIFYTFHNSSLPSSITESNPNFTLKSPIPKNPNSTISPNFTFLIKVLAFNRLDSVSRCLRSLATADYLGDRVHLHVYIDHFTPLNNSDVDLKLIESRRILDFVDGFEWKYGEKVVHYRTGNVGLQAQWLEAWWPGSDDEFAFVVEDDLEVSSLYYEYIKALIVNFYYNGSNYSPSIFGATLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDKNKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSHGYFNIYANFLHERALSVSHRDAGVNYGKTAGPDSQLLEERSLDFNILEMQPLSSLKWFDFCFREVRPGRFVRNSEELGTLLHSMQKQDSIFLVDLLGVSDAVVRNLLCNFERLNIRNYILMGPPSDSLVDLSRRGHPVINVDQFVTSIGNNKLTLQGSRIETINGIVAKAYVIKKFIESKYNTWVLDGSMLPTSDVLLESRDPNYDFCVAKNVELFYAESSSSSEKIWTNGFVSKIVAMADSLGRKDSSTQGSLSFVYIVTKLLEQNGASIRRVDETSFGMKIGSDGVSKSSIGDRKLVYWSTEMELESIQKRLKELNLWSIDSELSCTAVVCHKS* |