AlfalfaGEDB | Msa1317950

M. sativa cultivar zhongmu-4 / Msa1317950

KEGG: -
GO: GO:0000003 GO:0000118 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009555 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019222 GO:0019538 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048518 GO:0048555 GO:0048556 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0051276 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098732 GO:1901564 GO:1902494
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317950	sp\|Q84JT7\|ARID1_ARATH	39.938	323	153	9	253	570	244	530	1.07e-63	222

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317950	A0A072TN61	91.282	585	49	1	1	583	9	593	0.0	1071

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TFs/TRs:

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Gene ID	Type	Classification
Msa1317950	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa1317950	0.820502	6.631146e-53	-8.615850e-47
Msa0002710	Msa1317950	0.805617	1.224529e-49	-8.615850e-47
Msa0012940	Msa1317950	0.847539	1.085110e-59	-8.615850e-47
Msa0017390	Msa1317950	0.814916	1.207065e-51	-8.615850e-47
Msa0022550	Msa1317950	0.804394	2.206328e-49	-8.615850e-47
Msa0022750	Msa1317950	-0.812858	3.430382e-51	-8.615850e-47
Msa0035130	Msa1317950	0.810719	1.002013e-50	-8.615850e-47
Msa0036130	Msa1317950	0.824089	9.747951e-54	-8.615850e-47
Msa0039250	Msa1317950	0.827503	1.509637e-54	-8.615850e-47
Msa0041690	Msa1317950	0.810248	1.266610e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317950	MtrunA17_Chr8g0348681	89.720	321	33	0	1	321	9	329	0.0	568
Msa1317950	MtrunA17_Chr8g0348691	93.103	261	16	1	325	583	1	261	2.01e-174	494
Msa1317950	MtrunA17_Chr7g0248041	43.072	599	293	15	1	582	1	568	2.23e-141	422
Msa1317950	MtrunA17_Chr8g0387141	38.720	328	185	8	251	572	246	563	3.21e-61	213
Msa1317950	MtrunA17_Chr8g0387181	36.885	366	181	10	250	572	237	595	2.35e-60	211
Msa1317950	MtrunA17_Chr8g0387161	34.615	312	154	7	263	572	1	264	5.44e-49	172
Msa1317950	MtrunA17_Chr1g0186191	34.603	315	183	6	277	572	252	562	7.71e-49	179
Msa1317950	MtrunA17_Chr1g0186281	35.256	312	173	9	277	572	254	552	1.27e-48	178
Msa1317950	MtrunA17_Chr1g0186261	46.591	176	92	2	397	572	382	555	1.58e-45	169
Msa1317950	MtrunA17_Chr6g0479271	36.694	248	133	9	251	497	71	295	2.92e-31	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1317950	AT2G46040.3	39.938	323	153	9	253	570	244	530	1.09e-64	222
Msa1317950	AT2G46040.1	39.938	323	153	9	253	570	244	530	1.09e-64	222
Msa1317950	AT2G46040.2	39.938	323	153	9	253	570	258	544	1.16e-64	222
Msa1317950	AT4G11400.2	34.694	343	184	8	263	581	225	551	8.04e-55	195
Msa1317950	AT4G11400.1	34.694	343	184	8	263	581	225	551	8.04e-55	195
Msa1317950	AT5G04110.1	38.415	164	87	5	400	552	361	521	4.56e-28	119
Msa1317950	AT5G04110.3	38.415	164	87	5	400	552	361	521	4.56e-28	119
Msa1317950	AT5G04110.2	38.415	164	87	5	400	552	362	522	4.68e-28	119
Msa1317950	AT5G04110.4	36.735	147	79	5	400	535	361	504	1.95e-20	95.1
Msa1317950	AT1G26580.3	32.124	193	110	6	396	570	65	254	6.64e-19	90.1

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Find 186 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGATATGCAATCTA+TGG	0.330951	8_4:+19679016	None:intergenic
AAAATCAGAATTTGAAAGGT+TGG	0.383448	8_4:-19679157	Msa1317950:three_prime_UTR
AAACATTTCCTAACAAGAGC+AGG	0.439152	8_4:-19679486	Msa1317950:CDS
AAAGCGATACTAAGTGGTTT+GGG	0.433827	8_4:-19679819	Msa1317950:CDS
AAAGTTTCCCTGCTCTTGTT+AGG	0.326065	8_4:+19679478	None:intergenic
AAATGTTCATATCCTCTCTT+TGG	0.311222	8_4:+19679526	None:intergenic
AACATTTCCTAACAAGAGCA+GGG	0.584542	8_4:-19679485	Msa1317950:CDS
AACCACTTAGTATCGCTTTC+AGG	0.202455	8_4:+19679823	None:intergenic
AACGCAAAGCATACCATAGC+AGG	0.490321	8_4:-19679423	Msa1317950:CDS
AACTGAGGATGCGTCTGATT+TGG	0.415902	8_4:-19681595	Msa1317950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCGGTGATAATATTGTTC+CGG	-	chr8_4:19679608-19679627	Msa1317950:CDS	30.0%
TCTGTTTGATATGATGAGTT+GGG	-	chr8_4:19679692-19679711	Msa1317950:CDS	30.0%
ATGCTAATGTGATGTGTATT+TGG	-	chr8_4:19680474-19680493	Msa1317950:intron	30.0%
TGCTAATGTGATGTGTATTT+GGG	-	chr8_4:19680475-19680494	Msa1317950:intron	30.0%
TAAATAAAAAGGGCCCATAA+TGG	+	chr8_4:19680753-19680772	None:intergenic	30.0%
AATGTATGCTATCCCAAAAA+GGG	+	chr8_4:19680804-19680823	None:intergenic	30.0%
TGACTCTGCAAAATTATACA+AGG	+	chr8_4:19681002-19681021	None:intergenic	30.0%
ACGATCAAGTTATAGTAGAT+GGG	-	chr8_4:19681217-19681236	Msa1317950:intron	30.0%
ATTCTCAATTTCTTGTCGAA+AGG	-	chr8_4:19681360-19681379	Msa1317950:CDS	30.0%
TTCTCAATTTCTTGTCGAAA+GGG	-	chr8_4:19681361-19681380	Msa1317950:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	19678916	19682234	19678916	ID=Msa1317950;Name=Msa1317950
chr8_4	mRNA	19678916	19682234	19678916	ID=Msa1317950-mRNA-1;Parent=Msa1317950;Name=Msa1317950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|429\|583
chr8_4	exon	19678916	19680133	19678916	ID=Msa1317950-mRNA-1:exon:7226;Parent=Msa1317950-mRNA-1
chr8_4	exon	19681272	19682234	19681272	ID=Msa1317950-mRNA-1:exon:7225;Parent=Msa1317950-mRNA-1
chr8_4	CDS	19681272	19682234	19681272	ID=Msa1317950-mRNA-1:cds;Parent=Msa1317950-mRNA-1
chr8_4	CDS	19679345	19680133	19679345	ID=Msa1317950-mRNA-1:cds;Parent=Msa1317950-mRNA-1
chr8_4	three_prime_UTR	19678916	19679344	19678916	ID=Msa1317950-mRNA-1:three_prime_utr;Parent=Msa1317950-mRNA-1

Gene Sequence

>Msa1317950

ATGTTTGATGATGGACAGAAAGTTGATTTGCACAAGCTGTTGATTGTTGTTGACGGGAAAGGTGGGTTTGATGCTGTTTGTGATGGTGAGTTGTGGGATTTGGTTGGGGAAGAAAGTGGCTTAGGTGTTAACGTTGGTTCGACGCTGAAACTGGTGTTTAGTAAGTACAAGAGTGTTTTTGAGTCGTGTGTGATGAAAGTTGGTGATGCTAAGGTGTTTGATGAGTCTGGTTTGATGGGGTTTAAGGCTGAGGTGAATGAGTTGTTGTCGGGTCAGGGTGGGAATGTGGTGGCTGGAGAGAAGGTTAAGGGTGGAGCTGATGGTGCTAACGAGGTGAAGAGTGCGAATTTCGAGTCTAGTGGGGAGAAAGAAATTCACGGTGGGAATGTGGTAACTGGAGAGAAGGTTAAGGGTGGAGTTGATGGTGCTAACGAGGTGAAGAGTGTGAATTTTGAGTCTGGTGGGGTGAAAGAAGTTCCCGATGTAGGATTTCTCGATTCCAGAATGATGAATCGAGGGATGGTCAGTGATACCGATGTTGGAAAGCTGAGTGAGGGTAATGGTGATGGAATGGAAGTAGTTGAAGATTTTGATGGAGGGAAAATAACTGTAGGGACAACTGAGGATGCGTCTGATTTGGTGAAGAGCGGTGAGTCTGGATTGCTGAATGTTGGCGAGAATCATGATGGTGATATCGGTGATAATATTGTTCCGGTAGTGGATTTGTCTGGTGGTGATGGAAGTGGTTCTAGTCTTAAGAGGAAGAGAGAGGAGGCTCTGTTTGATATGATGAGTTGGGTTAAAAAAACCGCGAGTAACCCTTGTGATCCTGAAATTGTTCCGATGCCTGAAAAGCCAAAGTGGAGGGCTTACAGTAATCAGGAGGCTTGGAAGCGGGTTCTGTTGTTTCGAGAGGCTGCGTTTTACAAGAAAAAGTCGAGCATTGAACAGCAAAATTGGCAGAGTCAGAAGATGCATCCTAGCATGTATGATGATCCCACTCCGACAATCTACAATCTTAGGGAGAGGGGGAAACGTGACAAGAAACTATTTGAAAAACAAAAACCATCTTCACGAAGCTCGTCAAGTTCATCTGTGCTAGGCGAAGGAGATTTGGACGGGACCACAAGTCGTCGTGCTGTGAAACGGTTGCTTGCAAGTAGACGATCAAGTTATAGTAGATGGGCATCGGCTCGCATCTGCGTGGGGCAAAAGTATCAAGCTGAAGTGCCAGAGTGGACTGCTCCGAATCCTGAAAGCGATACTAAGTGGTTTGGGACCCAAGTATGGCCATTGGCTGTATCGAATTCTCAATTTCTTGTCGAAAGGGATCCTATAGGAAGGGGAAGACAGGATTCATGCGGCTGCGCAGTTCCAGGTTCTGTTGAATGTGTCAGATTCCACATTTCTGAGAAAAAAGCTAAAGCTAAGCTGGAGTTAGGCGTGGCTTTTTACCATTGGCGTTTCGATAAGGTCGGTGAAGATGTTCGGAATTCGTGGACAGATGAAGACGAGAAAAGGTTCAGGGAAGTGCTACAGCTTTACCCTCCAAAGAGAGGATATGAACATTTCTGGGATCATATTTTTGAAACATTTCCTAACAAGAGCAGGGAAACTTTAGTTAGCTACTACTTCAATGTCTATCTCCTGCAACGCAAAGCATACCATAGCAGGCATACACTTGGTGACATTCAGAGCGACGATGAAGAATCAGAATCTGATTTGAAGAAGCTTTTTGGACGTCGGGGATAG

Protein sequence

>Msa1317950

MFDDGQKVDLHKLLIVVDGKGGFDAVCDGELWDLVGEESGLGVNVGSTLKLVFSKYKSVFESCVMKVGDAKVFDESGLMGFKAEVNELLSGQGGNVVAGEKVKGGADGANEVKSANFESSGEKEIHGGNVVTGEKVKGGVDGANEVKSVNFESGGVKEVPDVGFLDSRMMNRGMVSDTDVGKLSEGNGDGMEVVEDFDGGKITVGTTEDASDLVKSGESGLLNVGENHDGDIGDNIVPVVDLSGGDGSGSSLKRKREEALFDMMSWVKKTASNPCDPEIVPMPEKPKWRAYSNQEAWKRVLLFREAAFYKKKSSIEQQNWQSQKMHPSMYDDPTPTIYNLRERGKRDKKLFEKQKPSSRSSSSSSVLGEGDLDGTTSRRAVKRLLASRRSSYSRWASARICVGQKYQAEVPEWTAPNPESDTKWFGTQVWPLAVSNSQFLVERDPIGRGRQDSCGCAVPGSVECVRFHISEKKAKAKLELGVAFYHWRFDKVGEDVRNSWTDEDEKRFREVLQLYPPKRGYEHFWDHIFETFPNKSRETLVSYYFNVYLLQRKAYHSRHTLGDIQSDDEESESDLKKLFGRRG*