Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562730 | XP_039685462.1 | 93.088 | 651 | 14 | 2 | 1 | 651 | 1 | 620 | 0.0 | 1217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562730 | A0A396GMQ1 | 93.088 | 651 | 14 | 2 | 1 | 651 | 1 | 620 | 0.0 | 1217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0562730 | -0.804628 | 1.971432e-49 | -8.615850e-47 |
| Msa0013270 | Msa0562730 | 0.800950 | 1.133289e-48 | -8.615850e-47 |
| Msa0016380 | Msa0562730 | -0.811769 | 5.931546e-51 | -8.615850e-47 |
| Msa0042210 | Msa0562730 | -0.807586 | 4.700911e-50 | -8.615850e-47 |
| Msa0044310 | Msa0562730 | 0.821393 | 4.136087e-53 | -8.615850e-47 |
| Msa0127510 | Msa0562730 | -0.802151 | 6.427925e-49 | -8.615850e-47 |
| Msa0167570 | Msa0562730 | -0.803997 | 2.668574e-49 | -8.615850e-47 |
| Msa0431550 | Msa0562730 | -0.801546 | 8.556126e-49 | -8.615850e-47 |
| Msa0474660 | Msa0562730 | -0.801618 | 8.270984e-49 | -8.615850e-47 |
| Msa0476560 | Msa0562730 | -0.803143 | 4.012250e-49 | -8.615850e-47 |
| Msa0266330 | Msa0562730 | -0.804709 | 1.896869e-49 | -8.615850e-47 |
| Msa0293060 | Msa0562730 | -0.807283 | 5.452091e-50 | -8.615850e-47 |
| Msa0341950 | Msa0562730 | -0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0492330 | Msa0562730 | -0.817093 | 3.943195e-52 | -8.615850e-47 |
| Msa0514630 | Msa0562730 | -0.803012 | 4.270480e-49 | -8.615850e-47 |
| Msa0525180 | Msa0562730 | -0.817241 | 3.652446e-52 | -8.615850e-47 |
| Msa0561830 | Msa0562730 | 0.813760 | 2.173849e-51 | -8.615850e-47 |
| Msa0562730 | Msa0620050 | -0.801117 | 1.047540e-48 | -8.615850e-47 |
| Msa0562730 | Msa0655370 | 0.827135 | 1.849242e-54 | -8.615850e-47 |
| Msa0562730 | Msa0679220 | 0.815984 | 6.987418e-52 | -8.615850e-47 |
| Msa0562730 | Msa0698510 | -0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0562730 | Msa0699200 | -0.803195 | 3.913879e-49 | -8.615850e-47 |
| Msa0562730 | Msa0753590 | -0.802835 | 4.646974e-49 | -8.615850e-47 |
| Msa0562730 | Msa0764840 | 0.800018 | 1.754466e-48 | -8.615850e-47 |
| Msa0562730 | Msa0882480 | -0.811933 | 5.463755e-51 | -8.615850e-47 |
| Msa0562730 | Msa0964400 | -0.825554 | 4.400411e-54 | -8.615850e-47 |
| Msa0562730 | Msa1002550 | -0.803794 | 2.940506e-49 | -8.615850e-47 |
| Msa0562730 | Msa1068960 | 0.804724 | 1.882691e-49 | -8.615850e-47 |
| Msa0562730 | Msa1120960 | 0.810380 | 1.186196e-50 | -8.615850e-47 |
| Msa0562730 | Msa1130150 | -0.801011 | 1.101137e-48 | -8.615850e-47 |
| Msa0562730 | Msa1156730 | 0.828410 | 9.132774e-55 | -8.615850e-47 |
| Msa0562730 | Msa1191270 | 0.813825 | 2.103510e-51 | -8.615850e-47 |
| Msa0562730 | Msa1191530 | -0.801229 | 9.936284e-49 | -8.615850e-47 |
| Msa0562730 | Msa1247200 | -0.800624 | 1.320619e-48 | -8.615850e-47 |
| Msa0562730 | Msa1287100 | -0.812621 | 3.866071e-51 | -8.615850e-47 |
| Msa0562730 | Msa1295480 | -0.809696 | 1.665451e-50 | -8.615850e-47 |
| Msa0562730 | Msa1451200 | -0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa0562730 | Msa1452560 | -0.806621 | 7.526761e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562730 | MtrunA17_Chr8g0376181 | 93.088 | 651 | 14 | 2 | 1 | 651 | 1 | 620 | 0.0 | 1217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0562730 | AT1G23170.2 | 54.267 | 621 | 225 | 9 | 53 | 644 | 15 | 605 | 0.0 | 608 |
| Msa0562730 | AT1G70770.2 | 56.794 | 574 | 199 | 8 | 55 | 614 | 14 | 552 | 0.0 | 586 |
| Msa0562730 | AT1G70770.1 | 56.794 | 574 | 199 | 8 | 55 | 614 | 14 | 552 | 0.0 | 586 |
| Msa0562730 | AT1G23170.1 | 49.919 | 621 | 206 | 10 | 53 | 644 | 15 | 559 | 1.54e-179 | 522 |
| Msa0562730 | AT3G11880.2 | 44.513 | 483 | 205 | 12 | 147 | 614 | 3 | 437 | 2.32e-117 | 358 |
| Msa0562730 | AT3G11880.1 | 45.652 | 460 | 194 | 11 | 170 | 614 | 3 | 421 | 2.63e-116 | 355 |
| Msa0562730 | AT3G11880.3 | 45.699 | 372 | 145 | 9 | 147 | 507 | 3 | 328 | 1.82e-91 | 287 |
| Msa0562730 | AT3G11880.4 | 42.553 | 329 | 132 | 9 | 147 | 464 | 3 | 285 | 4.84e-67 | 222 |
Find 204 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGTGTTGTTCCATTAAA+AGG | 0.106037 | 4_1:-62820099 | None:intergenic |
| TTCCTTTCTGCTTTGGTCTT+TGG | 0.140592 | 4_1:+62816641 | Msa0562730:CDS |
| ATGCGGTTTGCAGATTATTT+TGG | 0.189900 | 4_1:+62815517 | Msa0562730:CDS |
| CTACCCCAACTTGGAATCTT+TGG | 0.212744 | 4_1:+62819555 | Msa0562730:CDS |
| CCCTAAAGCACGGGCTGTTT+TGG | 0.242352 | 4_1:+62818438 | Msa0562730:CDS |
| CTCTCTCAGAATGGGATATA+TGG | 0.269677 | 4_1:-62818670 | None:intergenic |
| CCAAAACAGCCCGTGCTTTA+GGG | 0.272787 | 4_1:-62818438 | None:intergenic |
| TTCCTTGGGTGAAATTGTTC+AGG | 0.284035 | 4_1:+62815572 | Msa0562730:CDS |
| CACTTAGTTCCTTTCTGCTT+TGG | 0.285709 | 4_1:+62816634 | Msa0562730:CDS |
| CATACAAAGAGTTGACTTAT+AGG | 0.286028 | 4_1:-62814758 | None:intergenic |
| ACCAAAACAGCCCGTGCTTT+AGG | 0.295717 | 4_1:-62818439 | None:intergenic |
| TGTTTCATTGCTTTACTTCC+AGG | 0.297609 | 4_1:-62818711 | None:intergenic |
| AACCCTTGGTCACGGTTTGC+TGG | 0.310634 | 4_1:-62816689 | None:intergenic |
| CTAGTTCTTTCAACTTTAAG+AGG | 0.329557 | 4_1:-62817615 | None:intergenic |
| CAACCCGCAATCCAGGGATT+TGG | 0.335667 | 4_1:+62818295 | Msa0562730:CDS |
| TCAGCGCTGCTCAGTTTCCT+TGG | 0.337666 | 4_1:+62815557 | Msa0562730:CDS |
| ACCTTAGGTTTCTTCACCTT+TGG | 0.337808 | 4_1:-62815270 | None:intergenic |
| GTGGCTCTTGGCGGTTCTCC+TGG | 0.348034 | 4_1:+62818693 | Msa0562730:CDS |
| TCTCAGTTGGTTTGTATGCT+TGG | 0.353005 | 4_1:+62818234 | Msa0562730:CDS |
| TAATAAGAGCATCGGGCTTT+CGG | 0.358463 | 4_1:-62817976 | None:intergenic |
| GGATAGTATTCTTGCTGACT+TGG | 0.362648 | 4_1:+62816662 | Msa0562730:CDS |
| ACATCAAATAAATTATAAAA+TGG | 0.362821 | 4_1:-62819825 | None:intergenic |
| AAATCCAAAGATTCCAAGTT+GGG | 0.366453 | 4_1:-62819559 | None:intergenic |
| CGTGACCAAGGGTTCCAAAA+AGG | 0.370020 | 4_1:+62816698 | Msa0562730:CDS |
| TCGATAAAGATCCGGAATTC+AGG | 0.372452 | 4_1:+62820138 | Msa0562730:three_prime_UTR |
| GTTGAAGGTGAGTTTGTTAC+CGG | 0.374708 | 4_1:-62815028 | None:intergenic |
| AAACCAAATCCCTGGATTGC+GGG | 0.379701 | 4_1:-62818298 | None:intergenic |
| ATGAAGAACCGAGAAAAGAT+AGG | 0.379893 | 4_1:-62820070 | None:intergenic |
| TCGAGAATATTGTGCATTAC+CGG | 0.386536 | 4_1:+62819623 | Msa0562730:three_prime_UTR |
| GCTTGTAGCATTCAGTGCTT+TGG | 0.393155 | 4_1:-62818936 | None:intergenic |
| AGCAGCGTCGTTTCCGTTGA+AGG | 0.401884 | 4_1:-62815043 | None:intergenic |
| TACAGGTGTAGTTGCCTCAT+TGG | 0.408090 | 4_1:-62819918 | None:intergenic |
| CACTTGTTGAGCTCGTCATT+TGG | 0.414490 | 4_1:+62820115 | Msa0562730:three_prime_UTR |
| GCTTCCGCCACCGTCACCTT+AGG | 0.420485 | 4_1:-62815285 | None:intergenic |
| CGAGGCAAGGACTGCGGCGG+AGG | 0.421727 | 4_1:+62815113 | Msa0562730:CDS |
| CAGCGCTGCTCAGTTTCCTT+GGG | 0.422296 | 4_1:+62815558 | Msa0562730:CDS |
| GGGAGATCCTAAAGAACTTT+AGG | 0.423156 | 4_1:+62819255 | Msa0562730:CDS |
| GTGGGAGATGGATCCGGAGG+GGG | 0.426014 | 4_1:-62814902 | None:intergenic |
| GAAGATTGATGCAGCTGATC+TGG | 0.427235 | 4_1:+62815314 | Msa0562730:CDS |
| AAAGTGGCAACCCGCAATCC+AGG | 0.430699 | 4_1:+62818288 | Msa0562730:CDS |
| CAAGTCGCTTGAGTTGCATT+CGG | 0.432376 | 4_1:+62815068 | Msa0562730:CDS |
| TACTGTATTGCCCAAATTGA+GGG | 0.436105 | 4_1:+62817997 | Msa0562730:CDS |
| GCACTTTATTACGAGGCAAT+TGG | 0.442187 | 4_1:-62819710 | None:intergenic |
| CCTAAAGAACTTTAGGCAAA+AGG | 0.442468 | 4_1:+62819262 | Msa0562730:CDS |
| ATCTCCCTGAGTGGCTCATA+AGG | 0.444202 | 4_1:-62819239 | None:intergenic |
| TCACTCAGTATCCTGAATTC+CGG | 0.445294 | 4_1:-62820149 | None:intergenic |
| CTCTTAAAGTTGAAAGAACT+AGG | 0.447191 | 4_1:+62817616 | Msa0562730:CDS |
| GCACTGAATGCTACAAGCTA+TGG | 0.448778 | 4_1:+62818941 | Msa0562730:CDS |
| CAAGTGTTGTTCCATTAAAA+GGG | 0.449078 | 4_1:-62820098 | None:intergenic |
| GATGATGATGTGGATCGGTC+AGG | 0.450841 | 4_1:+62815207 | Msa0562730:CDS |
| TTGAGGTCAATGCTACTTTG+AGG | 0.453389 | 4_1:+62819787 | Msa0562730:three_prime_UTR |
| GGCGGTGTGGGAGATGGATC+CGG | 0.460314 | 4_1:-62814908 | None:intergenic |
| CTAAATTAACTTCATAATAC+AGG | 0.461268 | 4_1:-62819935 | None:intergenic |
| ACAAGTAACTTCAAAATCTC+AGG | 0.462196 | 4_1:+62816728 | Msa0562730:CDS |
| CTCACGGCGCCGATCACGGC+TGG | 0.463140 | 4_1:+62814947 | Msa0562730:CDS |
| GTTAACGGTGCTGTAAGAAA+AGG | 0.468049 | 4_1:+62818460 | Msa0562730:CDS |
| GACCTTCTGCCAGCCGTGAT+CGG | 0.468288 | 4_1:-62814956 | None:intergenic |
| GGTGAGTTTGTTACCGGTAC+CGG | 0.468566 | 4_1:-62815022 | None:intergenic |
| CTGAGAGAGGTGGCTCTTGG+CGG | 0.469550 | 4_1:+62818684 | Msa0562730:CDS |
| ATTGATTCCTCCTCCAGCAT+TGG | 0.470236 | 4_1:+62818489 | Msa0562730:CDS |
| TCAGTAGGAGATCTCTCAGT+TGG | 0.471593 | 4_1:+62818221 | Msa0562730:CDS |
| CCTATAGTGGTCAGCAAAAG+TGG | 0.473008 | 4_1:+62818272 | Msa0562730:CDS |
| TGTGGGAGATGGATCCGGAG+GGG | 0.474914 | 4_1:-62814903 | None:intergenic |
| GTGGATCGGTCAGGGGAGAA+TGG | 0.475403 | 4_1:+62815216 | Msa0562730:CDS |
| ACCTTTACTCTAGCTGAAGA+TGG | 0.476260 | 4_1:-62818538 | None:intergenic |
| CGCTTGCTACAATGTTCTCC+TGG | 0.480089 | 4_1:-62819160 | None:intergenic |
| CGGATCAAAGTTTCCAATGC+TGG | 0.481600 | 4_1:-62818502 | None:intergenic |
| GGCTGAATTTGATGATGCTC+CGG | 0.482341 | 4_1:+62815134 | Msa0562730:CDS |
| AGTTAATTTAGTTGAATCAA+AGG | 0.483236 | 4_1:+62819977 | Msa0562730:three_prime_UTR |
| ACCGTGCTTGCTGTGGCTGT+TGG | 0.484447 | 4_1:+62819520 | Msa0562730:CDS |
| GCGGAATCTCCTACCTATAG+TGG | 0.484759 | 4_1:+62818259 | Msa0562730:CDS |
| TTACTGTATTGCCCAAATTG+AGG | 0.486297 | 4_1:+62817996 | Msa0562730:CDS |
| AAGAGCCACCTCTCTCAGAA+TGG | 0.486370 | 4_1:-62818679 | None:intergenic |
| ATTCTGAGAGAGGTGGCTCT+TGG | 0.487210 | 4_1:+62818681 | Msa0562730:CDS |
| TGAAGAACCGAGAAAAGATA+GGG | 0.488422 | 4_1:-62820069 | None:intergenic |
| GGAAGAGTTTCACGAGGCCA+TGG | 0.488867 | 4_1:+62819475 | Msa0562730:CDS |
| CAGCTTACATCAACCACAAT+GGG | 0.495429 | 4_1:+62819678 | Msa0562730:three_prime_UTR |
| GATCGCTGCTTCGATCTAAC+CGG | 0.497470 | 4_1:-62815153 | None:intergenic |
| AGATTCGGCGGTGTGGGAGA+TGG | 0.497613 | 4_1:-62814914 | None:intergenic |
| GCTGCTTCTTTCGATACTCC+AGG | 0.497984 | 4_1:-62818889 | None:intergenic |
| TGAGCAGGAGAAAGTTTACC+AGG | 0.499942 | 4_1:+62819142 | Msa0562730:intron |
| GCAACCATCCATACAATCAC+TGG | 0.500036 | 4_1:-62818052 | None:intergenic |
| TCCTTGGGTGAAATTGTTCA+GGG | 0.500312 | 4_1:+62815573 | Msa0562730:CDS |
| TATTCTCGATTGCTCAGACC+TGG | 0.503768 | 4_1:-62819609 | None:intergenic |
| AAGCAGCTTCTATTGCACTT+TGG | 0.504270 | 4_1:+62818905 | Msa0562730:CDS |
| AAGGAAGCTAACGGCGTCGC+CGG | 0.508318 | 4_1:+62815003 | Msa0562730:CDS |
| GTCTCAGATATGTGAGAAAG+TGG | 0.510412 | 4_1:-62816564 | None:intergenic |
| AGAGCCACCTCTCTCAGAAT+GGG | 0.511188 | 4_1:-62818678 | None:intergenic |
| CTTCTTATGCTTCTTCGCGT+AGG | 0.511297 | 4_1:-62814980 | None:intergenic |
| TTGCCAGCATGGTGATGTAA+AGG | 0.515042 | 4_1:-62819891 | None:intergenic |
| AATTTCGCTATCATAGCAGC+AGG | 0.515210 | 4_1:+62818753 | Msa0562730:CDS |
| GGTGTGGGAGATGGATCCGG+AGG | 0.515556 | 4_1:-62814905 | None:intergenic |
| TGTCTCCTTATGAGCCACTC+AGG | 0.516916 | 4_1:+62819234 | Msa0562730:CDS |
| AAATATTGCAAGATAATCTC+AGG | 0.519787 | 4_1:+62819454 | Msa0562730:CDS |
| TTAACGGTGCTGTAAGAAAA+GGG | 0.520325 | 4_1:+62818461 | Msa0562730:CDS |
| ATTCTCGATTGCTCAGACCT+GGG | 0.521969 | 4_1:-62819608 | None:intergenic |
| GAAATCCAAAGATTCCAAGT+TGG | 0.524388 | 4_1:-62819560 | None:intergenic |
| CCTTTACTCTAGCTGAAGAT+GGG | 0.524391 | 4_1:-62818537 | None:intergenic |
| GATTGTATGGATGGTTGCTC+AGG | 0.525541 | 4_1:+62818057 | Msa0562730:CDS |
| GGAGTTAGATTCGGCGGTGT+GGG | 0.527264 | 4_1:-62814920 | None:intergenic |
| CAGAAAGGAACTAAGTGCCT+CGG | 0.527844 | 4_1:-62816628 | None:intergenic |
| TCAAATTTAACCTACTGGAA+TGG | 0.528782 | 4_1:-62817679 | None:intergenic |
| ACCAACAGCCACAGCAAGCA+CGG | 0.529034 | 4_1:-62819521 | None:intergenic |
| CGCGAAGAAGCATAAGAAGA+AGG | 0.529676 | 4_1:+62814984 | Msa0562730:CDS |
| TATACAAGACATCAGTTGAC+TGG | 0.531046 | 4_1:+62816589 | Msa0562730:CDS |
| ATGATGATGTGGATCGGTCA+GGG | 0.531980 | 4_1:+62815208 | Msa0562730:CDS |
| AAAAGCTGAAGAGGTGAAGA+AGG | 0.533059 | 4_1:+62815239 | Msa0562730:CDS |
| AAGCTGCAAAACCAAATCCC+TGG | 0.534627 | 4_1:-62818306 | None:intergenic |
| GTGTGGGAGATGGATCCGGA+GGG | 0.536705 | 4_1:-62814904 | None:intergenic |
| AGAAAGGAACTAAGTGCCTC+GGG | 0.536775 | 4_1:-62816627 | None:intergenic |
| GCATATCGGATGAGAGAATA+CGG | 0.537439 | 4_1:-62820246 | None:intergenic |
| GCTAACGGCGTCGCCGGTAC+CGG | 0.537790 | 4_1:+62815009 | Msa0562730:CDS |
| CGCCGATCACGGCTGGCAGA+AGG | 0.538888 | 4_1:+62814954 | Msa0562730:CDS |
| AAAGATAGGGGAAAGGACAC+AGG | 0.540151 | 4_1:-62820056 | None:intergenic |
| GATAGTATTCTTGCTGACTT+GGG | 0.540594 | 4_1:+62816663 | Msa0562730:CDS |
| GTGAGATGAGGAGTTAGATT+CGG | 0.541523 | 4_1:-62814929 | None:intergenic |
| TTAACCTACTGGAATGGAGA+TGG | 0.543466 | 4_1:-62817673 | None:intergenic |
| TCATCTCACGGCGCCGATCA+CGG | 0.544498 | 4_1:+62814943 | Msa0562730:CDS |
| CCCATCTTCAGCTAGAGTAA+AGG | 0.544992 | 4_1:+62818537 | Msa0562730:CDS |
| TTCATCCATGATTGAAAAGG+GGG | 0.545554 | 4_1:-62814872 | None:intergenic |
| AATACAGTAATAAGAGCATC+GGG | 0.546371 | 4_1:-62817983 | None:intergenic |
| TGCATTCGGAGGATCGGAGA+AGG | 0.547304 | 4_1:+62815082 | Msa0562730:CDS |
| AATATTTGTTGCTTTAGCGT+TGG | 0.547458 | 4_1:+62817946 | Msa0562730:CDS |
| AGCTATTGTACTATTTACAT+TGG | 0.548646 | 4_1:+62820033 | Msa0562730:three_prime_UTR |
| GGTAACAAACTCACCTTCAA+CGG | 0.548782 | 4_1:+62815030 | Msa0562730:CDS |
| TTGGTTTGTATGCTTGGTCG+CGG | 0.549255 | 4_1:+62818240 | Msa0562730:CDS |
| TCATTTGGTCGATAAAGATC+CGG | 0.553644 | 4_1:+62820130 | Msa0562730:three_prime_UTR |
| AAAGTTTCCAATGCTGGAGG+AGG | 0.556105 | 4_1:-62818496 | None:intergenic |
| TTTGTCCACCCCTAAAGCAC+GGG | 0.556433 | 4_1:+62818429 | Msa0562730:CDS |
| ATGCCTTTACATCACCATGC+TGG | 0.557569 | 4_1:+62819888 | Msa0562730:three_prime_UTR |
| GACCTTTACCGTGCTTGCTG+TGG | 0.557982 | 4_1:+62819513 | Msa0562730:CDS |
| CAATACAGTAATAAGAGCAT+CGG | 0.560977 | 4_1:-62817984 | None:intergenic |
| TATTGTGCATTACCGGCAGT+TGG | 0.567491 | 4_1:+62819630 | Msa0562730:three_prime_UTR |
| TTGAGTTGCATTCGGAGGAT+CGG | 0.568593 | 4_1:+62815076 | Msa0562730:CDS |
| CACTGAATGCTACAAGCTAT+GGG | 0.569907 | 4_1:+62818942 | Msa0562730:CDS |
| AAAGCTTTCTGATGACTGGA+AGG | 0.572198 | 4_1:+62819196 | Msa0562730:CDS |
| GGGGTGAGAAAGGGATTGAA+AGG | 0.572591 | 4_1:-62814852 | None:intergenic |
| CAAAACAGCCCGTGCTTTAG+GGG | 0.574054 | 4_1:-62818437 | None:intergenic |
| GGCATCGTTTGAGCAGAATG+AGG | 0.575026 | 4_1:+62815483 | Msa0562730:intron |
| AAAACCAAATCCCTGGATTG+CGG | 0.578328 | 4_1:-62818299 | None:intergenic |
| GAAGGAAAATTCTCGAGGCA+AGG | 0.579131 | 4_1:+62815100 | Msa0562730:CDS |
| AGCCACAGCAAGCACGGTAA+AGG | 0.579436 | 4_1:-62819515 | None:intergenic |
| TATTTGATGCAACCAACTGC+CGG | 0.580342 | 4_1:-62819642 | None:intergenic |
| GCTATCATAGCAGCAGGAGA+AGG | 0.581836 | 4_1:+62818759 | Msa0562730:CDS |
| ACTCCCAGTGATTGTATGGA+TGG | 0.582697 | 4_1:+62818048 | Msa0562730:CDS |
| GAAACCTAAGGTGACGGTGG+CGG | 0.583163 | 4_1:+62815281 | Msa0562730:CDS |
| ACCGAGAAAAGATAGGGGAA+AGG | 0.583495 | 4_1:-62820063 | None:intergenic |
| ATCCAAAGACCAAAGCAGAA+AGG | 0.583672 | 4_1:-62816643 | None:intergenic |
| AGGAGTTAGATTCGGCGGTG+TGG | 0.588248 | 4_1:-62814921 | None:intergenic |
| GAAGAGTTTCACGAGGCCAT+GGG | 0.594706 | 4_1:+62819476 | Msa0562730:CDS |
| GGAGAATGGAAAAGCTGAAG+AGG | 0.595415 | 4_1:+62815230 | Msa0562730:CDS |
| AACAGCCCGTGCTTTAGGGG+TGG | 0.598573 | 4_1:-62818434 | None:intergenic |
| GTCGCTTGAGTTGCATTCGG+AGG | 0.598827 | 4_1:+62815071 | Msa0562730:CDS |
| CATATATCCCATTCTGAGAG+AGG | 0.602504 | 4_1:+62818671 | Msa0562730:CDS |
| ACATCAACAATCTTAGCCAC+AGG | 0.603144 | 4_1:-62815601 | None:intergenic |
| ACAGGCTACAGAAAGATTTG+AGG | 0.606372 | 4_1:+62818647 | Msa0562730:intron |
| TAGCCAGCAAACCGTGACCA+AGG | 0.608458 | 4_1:+62816686 | Msa0562730:CDS |
| CAACCATCCATACAATCACT+GGG | 0.608838 | 4_1:-62818051 | None:intergenic |
| AAGTGGCAACCCGCAATCCA+GGG | 0.609912 | 4_1:+62818289 | Msa0562730:CDS |
| GTCTCCTTATGAGCCACTCA+GGG | 0.610196 | 4_1:+62819235 | Msa0562730:CDS |
| GTGATCGGCGCCGTGAGATG+AGG | 0.611262 | 4_1:-62814941 | None:intergenic |
| TCCCTGAACAATTTCACCCA+AGG | 0.618599 | 4_1:-62815574 | None:intergenic |
| CGATGAAGACGATGATGATG+TGG | 0.624368 | 4_1:+62815197 | Msa0562730:CDS |
| AGCCAGCAAACCGTGACCAA+GGG | 0.624634 | 4_1:+62816687 | Msa0562730:CDS |
| CAGATGACACAGAATAGTTG+AGG | 0.629463 | 4_1:+62819770 | Msa0562730:three_prime_UTR |
| TCAGCTTACATCAACCACAA+TGG | 0.631103 | 4_1:+62819677 | Msa0562730:three_prime_UTR |
| TTTCATCCATGATTGAAAAG+GGG | 0.631521 | 4_1:-62814873 | None:intergenic |
| CTTTACTCTAGCTGAAGATG+GGG | 0.634564 | 4_1:-62818536 | None:intergenic |
| TGATGATGTGGATCGGTCAG+GGG | 0.634863 | 4_1:+62815209 | Msa0562730:CDS |
| ATGCTGGCAAAATGCCAATG+AGG | 0.634948 | 4_1:+62819904 | Msa0562730:three_prime_UTR |
| TTTACTCTAGCTGAAGATGG+GGG | 0.635009 | 4_1:-62818535 | None:intergenic |
| GTAATTCCGTGTTGATAGTG+AGG | 0.635327 | 4_1:+62814729 | Msa0562730:five_prime_UTR |
| TTGGTTTGCTGTACCCATTG+TGG | 0.636334 | 4_1:-62819691 | None:intergenic |
| AATCCAAAGATTCCAAGTTG+GGG | 0.637942 | 4_1:-62819558 | None:intergenic |
| CAGTTGACTGGATCAATCGT+CGG | 0.638176 | 4_1:+62816601 | Msa0562730:CDS |
| TCAGGATACTGAGTGAGCGA+AGG | 0.638319 | 4_1:+62820156 | Msa0562730:three_prime_UTR |
| ATCTACGTGTAGGCTTCAGT+AGG | 0.638927 | 4_1:+62818206 | Msa0562730:intron |
| GAATCTAACTCCTCATCTCA+CGG | 0.640221 | 4_1:+62814931 | Msa0562730:CDS |
| ACCAAAGGTGAAGAAACCTA+AGG | 0.640238 | 4_1:+62815269 | Msa0562730:CDS |
| ATCAAAGTTTCCAATGCTGG+AGG | 0.642389 | 4_1:-62818499 | None:intergenic |
| GATCAATCGTCGGTCTCCCG+AGG | 0.644658 | 4_1:+62816611 | Msa0562730:CDS |
| TTCTTTAGGATCTCCCTGAG+TGG | 0.645060 | 4_1:-62819248 | None:intergenic |
| CATAAGAAGAAGGAAGCTAA+CGG | 0.647003 | 4_1:+62814994 | Msa0562730:CDS |
| TGTATTGCCCAAATTGAGGG+AGG | 0.648811 | 4_1:+62818000 | Msa0562730:CDS |
| GAAGAAGGTTAAGAAACCAA+AGG | 0.649224 | 4_1:+62815254 | Msa0562730:CDS |
| GAAGAACCGAGAAAAGATAG+GGG | 0.649827 | 4_1:-62820068 | None:intergenic |
| ATGAGGAGATACAGATGATG+CGG | 0.649967 | 4_1:+62815500 | Msa0562730:CDS |
| TCTCGAGGCAAGGACTGCGG+CGG | 0.650064 | 4_1:+62815110 | Msa0562730:CDS |
| GCATTATGCACTTTATTACG+AGG | 0.653396 | 4_1:-62819717 | None:intergenic |
| ATATCCCATTCTGAGAGAGG+TGG | 0.657382 | 4_1:+62818674 | Msa0562730:CDS |
| GGTGAAGAAACCTAAGGTGA+CGG | 0.658046 | 4_1:+62815275 | Msa0562730:CDS |
| TCATCCATGATTGAAAAGGG+GGG | 0.662699 | 4_1:-62814871 | None:intergenic |
| TTACTCTAGCTGAAGATGGG+GGG | 0.666207 | 4_1:-62818534 | None:intergenic |
| ATTGTTCAGGGAGTCACCTG+TGG | 0.666973 | 4_1:+62815585 | Msa0562730:CDS |
| GAATGAGAAAGCATTGACAA+CGG | 0.668814 | 4_1:+62819390 | Msa0562730:intron |
| AATTCTCGAGGCAAGGACTG+CGG | 0.671227 | 4_1:+62815107 | Msa0562730:CDS |
| TAACGGTGCTGTAAGAAAAG+GGG | 0.674924 | 4_1:+62818462 | Msa0562730:CDS |
| AAGACGATGATGATGTGGAT+CGG | 0.676350 | 4_1:+62815202 | Msa0562730:CDS |
| AGATGAGGAGTTAGATTCGG+CGG | 0.685801 | 4_1:-62814926 | None:intergenic |
| TCGGAGAAGGAAAATTCTCG+AGG | 0.687907 | 4_1:+62815095 | Msa0562730:CDS |
| GAAGAAACCTAAGGTGACGG+TGG | 0.705385 | 4_1:+62815278 | Msa0562730:CDS |
| TCGTAATAAAGTGCATAATG+CGG | 0.707183 | 4_1:+62819719 | Msa0562730:three_prime_UTR |
| AATTGACCTCACTATCAACA+CGG | 0.710546 | 4_1:-62814735 | None:intergenic |
| ATCTCAGGAAGAGTTTCACG+AGG | 0.743689 | 4_1:+62819469 | Msa0562730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATCAAATAAATTATAAAA+TGG | - | chr4_1:62819828-62819847 | None:intergenic | 10.0% |
| !! | TTAATGTTGAGATTTAATTA+CGG | + | chr4_1:62815378-62815397 | Msa0562730:intron | 15.0% |
| !!! | CTGAATATTTATATTTTATC+AGG | + | chr4_1:62816539-62816558 | Msa0562730:intron | 15.0% |
| !!! | ATATTATTTTACCAACTATT+CGG | - | chr4_1:62817555-62817574 | None:intergenic | 15.0% |
| !!! | TTTATTTTGATGACAAATCA+TGG | + | chr4_1:62815637-62815656 | Msa0562730:intron | 20.0% |
| !! | ATCATACTTATATCTTAACT+AGG | + | chr4_1:62815903-62815922 | Msa0562730:intron | 20.0% |
| !! | TCATACTTATATTCTTAACT+AGG | + | chr4_1:62815949-62815968 | Msa0562730:intron | 20.0% |
| !! | ATAGAGCTAAATAATATGTT+TGG | + | chr4_1:62815977-62815996 | Msa0562730:intron | 20.0% |
| !! | TACATAAGTTCACATTATAA+CGG | - | chr4_1:62816209-62816228 | None:intergenic | 20.0% |
| !!! | GAACTTATGTAGTTTTTTTA+AGG | + | chr4_1:62816218-62816237 | Msa0562730:intron | 20.0% |
| !!! | TATGTAGTTTTTTTAAGGTT+TGG | + | chr4_1:62816223-62816242 | Msa0562730:intron | 20.0% |
| !!! | TATTTTAACTTGGTAGAAAA+AGG | - | chr4_1:62816287-62816306 | None:intergenic | 20.0% |
| !!! | GACACATTAATATTTTAACT+TGG | - | chr4_1:62816297-62816316 | None:intergenic | 20.0% |
| !!! | GTTATTATTGGATTTTGTTT+AGG | - | chr4_1:62816821-62816840 | None:intergenic | 20.0% |
| !!! | GTTTTTTTGTTCACTATTAA+GGG | + | chr4_1:62816886-62816905 | Msa0562730:intron | 20.0% |
| !!! | GTTTTTTTGTTCACTATTAA+GGG | + | chr4_1:62816886-62816905 | Msa0562730:intron | 20.0% |
| !! | GCGTTAATTAAACATTATTT+GGG | - | chr4_1:62817111-62817130 | None:intergenic | 20.0% |
| !! | TGCGTTAATTAAACATTATT+TGG | - | chr4_1:62817112-62817131 | None:intergenic | 20.0% |
| !! | ATCAATATCAAGACAAATAA+AGG | + | chr4_1:62817280-62817299 | Msa0562730:intron | 20.0% |
| !! | GACTTGTAAAAAAAACTTAT+TGG | + | chr4_1:62817774-62817793 | Msa0562730:intron | 20.0% |
| !!! | TTGAATGTGAAATGATTTTA+GGG | - | chr4_1:62817824-62817843 | None:intergenic | 20.0% |
| !! | AATATTAAAAATCTACGTGT+AGG | + | chr4_1:62818196-62818215 | Msa0562730:intron | 20.0% |
| !! | AAGCAAATAACAAAACATAA+TGG | - | chr4_1:62818402-62818421 | None:intergenic | 20.0% |
| !! | AGAAATCAAACAATAAAATC+AGG | - | chr4_1:62818792-62818811 | None:intergenic | 20.0% |
| !!! | TTTTTGTAATCTTTTCTATG+AGG | + | chr4_1:62819002-62819021 | Msa0562730:intron | 20.0% |
| !! | AATAAGTATATAGAGTTTCA+TGG | - | chr4_1:62819100-62819119 | None:intergenic | 20.0% |
| !! | TATTTGCTCTTATTCTTTAT+TGG | + | chr4_1:62819116-62819135 | Msa0562730:intron | 20.0% |
| !! | CTAAATTAACTTCATAATAC+AGG | - | chr4_1:62819938-62819957 | None:intergenic | 20.0% |
| !! | AGTTAATTTAGTTGAATCAA+AGG | + | chr4_1:62819977-62819996 | Msa0562730:three_prime_UTR | 20.0% |
| !!! | CATTTAACTCTAAAAAGTTA+TGG | - | chr4_1:62820214-62820233 | None:intergenic | 20.0% |
| !!! | CATAACTTTTTAGAGTTAAA+TGG | + | chr4_1:62820212-62820231 | Msa0562730:three_prime_UTR | 20.0% |
| ! | AAATTGGAATAGAAAAACGA+AGG | - | chr4_1:62814802-62814821 | None:intergenic | 25.0% |
| ! | GAGAAATGAAATCGAAAAAT+TGG | - | chr4_1:62814818-62814837 | None:intergenic | 25.0% |
| !! | TTTTCATCCATGATTGAAAA+GGG | - | chr4_1:62814877-62814896 | None:intergenic | 25.0% |
| !!! | TTTAATTACGGTTTTGTGAT+TGG | + | chr4_1:62815390-62815409 | Msa0562730:intron | 25.0% |
| !!! | TGCATGTTTGTTTTTGAATT+AGG | + | chr4_1:62815462-62815481 | Msa0562730:intron | 25.0% |
| ! | TTCAACTGTTATATATGTTC+TGG | + | chr4_1:62815710-62815729 | Msa0562730:intron | 25.0% |
| !! | TATATATGTTCTGGTGTTTT+TGG | + | chr4_1:62815719-62815738 | Msa0562730:intron | 25.0% |
| !!! | TATGTTTGGAGCTTTTAATT+TGG | + | chr4_1:62815991-62816010 | Msa0562730:intron | 25.0% |
| ! | AGAAAGAAATGTGTTAAACT+TGG | + | chr4_1:62816032-62816051 | Msa0562730:intron | 25.0% |
| ! | TATAAAACATTTCAGTACTG+TGG | - | chr4_1:62816368-62816387 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTGTTCACTATTA+AGG | + | chr4_1:62816885-62816904 | Msa0562730:intron | 25.0% |
| ! | TTATTGGAAGATTGTTTACT+AGG | - | chr4_1:62816956-62816975 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTGTTCACTATTA+AGG | + | chr4_1:62816885-62816904 | Msa0562730:intron | 25.0% |
| ! | AATGAAGATCCAATAGAAAA+GGG | - | chr4_1:62817226-62817245 | None:intergenic | 25.0% |
| !! | GTTGAATGTGAAATGATTTT+AGG | - | chr4_1:62817825-62817844 | None:intergenic | 25.0% |
| !!! | AACATATTCTTCGTTTTGAA+AGG | - | chr4_1:62817866-62817885 | None:intergenic | 25.0% |
| ! | CAATCTACATCTAAAAAACA+GGG | - | chr4_1:62817897-62817916 | None:intergenic | 25.0% |
| ! | TCAATCTACATCTAAAAAAC+AGG | - | chr4_1:62817898-62817917 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTACCCTTTCAAA+AGG | + | chr4_1:62818134-62818153 | Msa0562730:intron | 25.0% |
| !!! | TTGTACTTATCCTTTTGAAA+GGG | - | chr4_1:62818147-62818166 | None:intergenic | 25.0% |
| !! | GAAAAGTATGTAAATGTTTC+TGG | + | chr4_1:62818332-62818351 | Msa0562730:intron | 25.0% |
| ! | TCAATATATTGCTATGATAC+AGG | + | chr4_1:62818629-62818648 | Msa0562730:intron | 25.0% |
| !!! | ATGGACTGATTTAACTATTT+TGG | + | chr4_1:62819362-62819381 | Msa0562730:intron | 25.0% |
| ! | AAATATTGCAAGATAATCTC+AGG | + | chr4_1:62819454-62819473 | Msa0562730:CDS | 25.0% |
| ! | AGCTATTGTACTATTTACAT+TGG | + | chr4_1:62820033-62820052 | Msa0562730:three_prime_UTR | 25.0% |
| !! | GATTGTTTTCTGTATTATGT+TGG | + | chr4_1:62820184-62820203 | Msa0562730:three_prime_UTR | 25.0% |
| ! | CATACAAAGAGTTGACTTAT+AGG | - | chr4_1:62814761-62814780 | None:intergenic | 30.0% |
| ATAGAAAAACGAAGGTGAAA+GGG | - | chr4_1:62814794-62814813 | None:intergenic | 30.0% | |
| AATAGAAAAACGAAGGTGAA+AGG | - | chr4_1:62814795-62814814 | None:intergenic | 30.0% | |
| TTTCATCCATGATTGAAAAG+GGG | - | chr4_1:62814876-62814895 | None:intergenic | 30.0% | |
| ! | GTTTTCATCCATGATTGAAA+AGG | - | chr4_1:62814878-62814897 | None:intergenic | 30.0% |
| ! | GACTTTTCTCGTTGATATAT+CGG | + | chr4_1:62815338-62815357 | Msa0562730:CDS | 30.0% |
| CAAATCTTGCAACAGAAATT+GGG | - | chr4_1:62815814-62815833 | None:intergenic | 30.0% | |
| ACAAATCTTGCAACAGAAAT+TGG | - | chr4_1:62815815-62815834 | None:intergenic | 30.0% | |
| TATCATAAACCCTCATCATA+TGG | - | chr4_1:62815879-62815898 | None:intergenic | 30.0% | |
| TATATCTTAACTAGGAACTC+AGG | + | chr4_1:62815911-62815930 | Msa0562730:intron | 30.0% | |
| ATATCTTAACTAGGAACTCA+GGG | + | chr4_1:62815912-62815931 | Msa0562730:intron | 30.0% | |
| GACTTATAAAAACTGCTACA+TGG | - | chr4_1:62816064-62816083 | None:intergenic | 30.0% | |
| ACAAGTAACTTCAAAATCTC+AGG | + | chr4_1:62816728-62816747 | Msa0562730:CDS | 30.0% | |
| ! | TAGCTTAGTTTGGTTTATGT+TGG | - | chr4_1:62816852-62816871 | None:intergenic | 30.0% |
| ACATAAACCAAACTAAGCTA+AGG | + | chr4_1:62816852-62816871 | Msa0562730:intron | 30.0% | |
| TGTCTTTGTGATTCAGTATA+TGG | - | chr4_1:62816931-62816950 | None:intergenic | 30.0% | |
| ATATACTGAATCACAAAGAC+AGG | + | chr4_1:62816930-62816949 | Msa0562730:intron | 30.0% | |
| ! | TAGCTTAGTTTGGTTTATGT+TGG | - | chr4_1:62816852-62816871 | None:intergenic | 30.0% |
| ACATAAACCAAACTAAGCTA+AGG | + | chr4_1:62816852-62816871 | Msa0562730:intron | 30.0% | |
| GAATGAAGATCCAATAGAAA+AGG | - | chr4_1:62817227-62817246 | None:intergenic | 30.0% | |
| ACAAATAAAGGAACTTCTGT+AGG | + | chr4_1:62817292-62817311 | Msa0562730:intron | 30.0% | |
| ACGAATATTCTGATATTTCC+AGG | - | chr4_1:62817358-62817377 | None:intergenic | 30.0% | |
| !! | TTGAAGTATTTTTCCCCTTT+TGG | + | chr4_1:62817386-62817405 | Msa0562730:intron | 30.0% |
| ! | CTAGTTCTTTCAACTTTAAG+AGG | - | chr4_1:62817618-62817637 | None:intergenic | 30.0% |
| CTCTTAAAGTTGAAAGAACT+AGG | + | chr4_1:62817616-62817635 | Msa0562730:CDS | 30.0% | |
| TCAAATTTAACCTACTGGAA+TGG | - | chr4_1:62817682-62817701 | None:intergenic | 30.0% | |
| CCAAATCAAATTTAACCTAC+TGG | - | chr4_1:62817687-62817706 | None:intergenic | 30.0% | |
| CCAGTAGGTTAAATTTGATT+TGG | + | chr4_1:62817684-62817703 | Msa0562730:intron | 30.0% | |
| ATTGTTGCAGTCAAAAAACA+GGG | - | chr4_1:62817735-62817754 | None:intergenic | 30.0% | |
| ! | ATTTTGTGACTTTTGCCTTT+TGG | + | chr4_1:62817797-62817816 | Msa0562730:intron | 30.0% |
| !! | AAATGATTTTAGGGACCAAA+AGG | - | chr4_1:62817815-62817834 | None:intergenic | 30.0% |
| !! | AATATTTGTTGCTTTAGCGT+TGG | + | chr4_1:62817946-62817965 | Msa0562730:CDS | 30.0% |
| !! | AATACAGTAATAAGAGCATC+GGG | - | chr4_1:62817986-62818005 | None:intergenic | 30.0% |
| ! | CAATACAGTAATAAGAGCAT+CGG | - | chr4_1:62817987-62818006 | None:intergenic | 30.0% |
| ! | TTTTTATCCTCCCTCAATTT+GGG | - | chr4_1:62818010-62818029 | None:intergenic | 30.0% |
| !!! | TTTTTTATCCTCCCTCAATT+TGG | - | chr4_1:62818011-62818030 | None:intergenic | 30.0% |
| AGGGAGGATAAAAAATATCA+AGG | + | chr4_1:62818016-62818035 | Msa0562730:CDS | 30.0% | |
| TAGATGCCATATCAACTAAA+TGG | + | chr4_1:62818087-62818106 | Msa0562730:intron | 30.0% | |
| AGATGCCATATCAACTAAAT+GGG | + | chr4_1:62818088-62818107 | Msa0562730:intron | 30.0% | |
| ! | GTTGTACTTATCCTTTTGAA+AGG | - | chr4_1:62818148-62818167 | None:intergenic | 30.0% |
| TTAAGCATTAGCAAGATGAA+GGG | - | chr4_1:62818178-62818197 | None:intergenic | 30.0% | |
| ATTAAGCATTAGCAAGATGA+AGG | - | chr4_1:62818179-62818198 | None:intergenic | 30.0% | |
| ACAAAACATAATGGTGAAGA+TGG | - | chr4_1:62818393-62818412 | None:intergenic | 30.0% | |
| !! | AAAATACCTTCTAAAGCACT+CGG | - | chr4_1:62818839-62818858 | None:intergenic | 30.0% |
| !!! | TATTTTTTTCCAGACAATCC+TGG | + | chr4_1:62818871-62818890 | Msa0562730:intron | 30.0% |
| ATTCTTTATTGGATATGAGC+AGG | + | chr4_1:62819127-62819146 | Msa0562730:intron | 30.0% | |
| AAATCCAAAGATTCCAAGTT+GGG | - | chr4_1:62819562-62819581 | None:intergenic | 30.0% | |
| ! | CTTCATTTGTTCCCTTTTAA+TGG | + | chr4_1:62820087-62820106 | Msa0562730:three_prime_UTR | 30.0% |
| ! | CAAGTGTTGTTCCATTAAAA+GGG | - | chr4_1:62820101-62820120 | None:intergenic | 30.0% |
| ! | ACAAGTGTTGTTCCATTAAA+AGG | - | chr4_1:62820102-62820121 | None:intergenic | 30.0% |
| AATTGACCTCACTATCAACA+CGG | - | chr4_1:62814738-62814757 | None:intergenic | 35.0% | |
| TTCATCCATGATTGAAAAGG+GGG | - | chr4_1:62814875-62814894 | None:intergenic | 35.0% | |
| CATAAGAAGAAGGAAGCTAA+CGG | + | chr4_1:62814994-62815013 | Msa0562730:CDS | 35.0% | |
| GAAGAAGGTTAAGAAACCAA+AGG | + | chr4_1:62815254-62815273 | Msa0562730:CDS | 35.0% | |
| TTTCTCGTTGATATATCGGT+AGG | + | chr4_1:62815342-62815361 | Msa0562730:intron | 35.0% | |
| TTCTCGTTGATATATCGGTA+GGG | + | chr4_1:62815343-62815362 | Msa0562730:intron | 35.0% | |
| TATCGGTAGGGTTATTGAAA+TGG | + | chr4_1:62815355-62815374 | Msa0562730:intron | 35.0% | |
| ! | ATGCGGTTTGCAGATTATTT+TGG | + | chr4_1:62815517-62815536 | Msa0562730:CDS | 35.0% |
| TGTTGTTATGTGAATTGTGC+TGG | + | chr4_1:62815675-62815694 | Msa0562730:intron | 35.0% | |
| !!! | TATGTTCTGGTGTTTTTGGA+TGG | + | chr4_1:62815723-62815742 | Msa0562730:intron | 35.0% |
| AAAGTCATTGATCCTCGTAA+AGG | + | chr4_1:62816111-62816130 | Msa0562730:intron | 35.0% | |
| ! | CCAACAATTTCATTTGAAGC+TGG | - | chr4_1:62816145-62816164 | None:intergenic | 35.0% |
| CCAGCTTCAAATGAAATTGT+TGG | + | chr4_1:62816142-62816161 | Msa0562730:intron | 35.0% | |
| ACATTTCAGTACTGTGGTAT+GGG | - | chr4_1:62816362-62816381 | None:intergenic | 35.0% | |
| AACATTTCAGTACTGTGGTA+TGG | - | chr4_1:62816363-62816382 | None:intergenic | 35.0% | |
| ! | CTGAATCTGTTTCGATGTTT+TGG | + | chr4_1:62816419-62816438 | Msa0562730:intron | 35.0% |
| TATACAAGACATCAGTTGAC+TGG | + | chr4_1:62816589-62816608 | Msa0562730:CDS | 35.0% | |
| !! | GATAGTATTCTTGCTGACTT+GGG | + | chr4_1:62816663-62816682 | Msa0562730:CDS | 35.0% |
| ! | CTTAGTTTGGTTTATGTTGG+TGG | - | chr4_1:62816849-62816868 | None:intergenic | 35.0% |
| ! | CTTAGTTTGGTTTATGTTGG+TGG | - | chr4_1:62816849-62816868 | None:intergenic | 35.0% |
| TTGGGACAAGATTGTTTACT+AGG | - | chr4_1:62817093-62817112 | None:intergenic | 35.0% | |
| ! | CCAGAAATTTTACACCATTG+TGG | - | chr4_1:62817157-62817176 | None:intergenic | 35.0% |
| CCACAATGGTGTAAAATTTC+TGG | + | chr4_1:62817154-62817173 | Msa0562730:intron | 35.0% | |
| ! | CAATGGTGTAAAATTTCTGG+AGG | + | chr4_1:62817157-62817176 | Msa0562730:intron | 35.0% |
| ! | CTTTTCTCACCCTTTTCTAT+TGG | + | chr4_1:62817214-62817233 | Msa0562730:intron | 35.0% |
| ! | AAGTATTTTTCCCCTTTTGG+AGG | + | chr4_1:62817389-62817408 | Msa0562730:intron | 35.0% |
| ! | AGTATTTTTCCCCTTTTGGA+GGG | + | chr4_1:62817390-62817409 | Msa0562730:intron | 35.0% |
| AATCAAATGACCCTCCAAAA+GGG | - | chr4_1:62817403-62817422 | None:intergenic | 35.0% | |
| ATTTGATTCATGTTGCCAAC+CGG | + | chr4_1:62817415-62817434 | Msa0562730:intron | 35.0% | |
| ACAATGGCAAACAAAGAACA+TGG | - | chr4_1:62817511-62817530 | None:intergenic | 35.0% | |
| CTGAATAATGAAAGTCAAGC+AGG | - | chr4_1:62817580-62817599 | None:intergenic | 35.0% | |
| !! | ATTTGATTTGGAGAGTTGCA+TGG | + | chr4_1:62817696-62817715 | Msa0562730:intron | 35.0% |
| CATTGTTGCAGTCAAAAAAC+AGG | - | chr4_1:62817736-62817755 | None:intergenic | 35.0% | |
| !! | ATTGATTTTACATGACCTGC+AGG | + | chr4_1:62817919-62817938 | Msa0562730:intron | 35.0% |
| TTACTGTATTGCCCAAATTG+AGG | + | chr4_1:62817996-62818015 | Msa0562730:CDS | 35.0% | |
| TACTGTATTGCCCAAATTGA+GGG | + | chr4_1:62817997-62818016 | Msa0562730:CDS | 35.0% | |
| AAAAACTCCCAGTGATTGTA+TGG | + | chr4_1:62818044-62818063 | Msa0562730:CDS | 35.0% | |
| ! | ATGAGCCCATTTAGTTGATA+TGG | - | chr4_1:62818096-62818115 | None:intergenic | 35.0% |
| TAAGCATTAGCAAGATGAAG+GGG | - | chr4_1:62818177-62818196 | None:intergenic | 35.0% | |
| AACATCAATGGTACGAAAAG+GGG | - | chr4_1:62818369-62818388 | None:intergenic | 35.0% | |
| CAACATCAATGGTACGAAAA+GGG | - | chr4_1:62818370-62818389 | None:intergenic | 35.0% | |
| !! | TTAACGGTGCTGTAAGAAAA+GGG | + | chr4_1:62818461-62818480 | Msa0562730:CDS | 35.0% |
| TGTTTCATTGCTTTACTTCC+AGG | - | chr4_1:62818714-62818733 | None:intergenic | 35.0% | |
| TGAAAAAGCTTTCTGATGAC+TGG | + | chr4_1:62819192-62819211 | Msa0562730:CDS | 35.0% | |
| ! | CCTTTTGCCTAAAGTTCTTT+AGG | - | chr4_1:62819265-62819284 | None:intergenic | 35.0% |
| CCTAAAGAACTTTAGGCAAA+AGG | + | chr4_1:62819262-62819281 | Msa0562730:CDS | 35.0% | |
| ACTTACAAATACCCTTGACA+TGG | + | chr4_1:62819343-62819362 | Msa0562730:intron | 35.0% | |
| GTTAAATCAGTCCATGTCAA+GGG | - | chr4_1:62819357-62819376 | None:intergenic | 35.0% | |
| AGTTAAATCAGTCCATGTCA+AGG | - | chr4_1:62819358-62819377 | None:intergenic | 35.0% | |
| !! | GAATGAGAAAGCATTGACAA+CGG | + | chr4_1:62819390-62819409 | Msa0562730:intron | 35.0% |
| AATCCAAAGATTCCAAGTTG+GGG | - | chr4_1:62819561-62819580 | None:intergenic | 35.0% | |
| GAAATCCAAAGATTCCAAGT+TGG | - | chr4_1:62819563-62819582 | None:intergenic | 35.0% | |
| TCGAGAATATTGTGCATTAC+CGG | + | chr4_1:62819623-62819642 | Msa0562730:three_prime_UTR | 35.0% | |
| TGAAGAACCGAGAAAAGATA+GGG | - | chr4_1:62820072-62820091 | None:intergenic | 35.0% | |
| ATGAAGAACCGAGAAAAGAT+AGG | - | chr4_1:62820073-62820092 | None:intergenic | 35.0% | |
| TCATTTGGTCGATAAAGATC+CGG | + | chr4_1:62820130-62820149 | Msa0562730:three_prime_UTR | 35.0% | |
| ! | GTTTTCTGTATTATGTTGGC+AGG | + | chr4_1:62820188-62820207 | Msa0562730:three_prime_UTR | 35.0% |
| !! | GTAATTCCGTGTTGATAGTG+AGG | + | chr4_1:62814729-62814748 | Msa0562730:five_prime_UTR | 40.0% |
| TCATCCATGATTGAAAAGGG+GGG | - | chr4_1:62814874-62814893 | None:intergenic | 40.0% | |
| GTGAGATGAGGAGTTAGATT+CGG | - | chr4_1:62814932-62814951 | None:intergenic | 40.0% | |
| GAATCTAACTCCTCATCTCA+CGG | + | chr4_1:62814931-62814950 | Msa0562730:CDS | 40.0% | |
| !! | GTTGAAGGTGAGTTTGTTAC+CGG | - | chr4_1:62815031-62815050 | None:intergenic | 40.0% |
| GGTAACAAACTCACCTTCAA+CGG | + | chr4_1:62815030-62815049 | Msa0562730:CDS | 40.0% | |
| ! | AAGACGATGATGATGTGGAT+CGG | + | chr4_1:62815202-62815221 | Msa0562730:CDS | 40.0% |
| AAAAGCTGAAGAGGTGAAGA+AGG | + | chr4_1:62815239-62815258 | Msa0562730:CDS | 40.0% | |
| ACCAAAGGTGAAGAAACCTA+AGG | + | chr4_1:62815269-62815288 | Msa0562730:CDS | 40.0% | |
| ACCTTAGGTTTCTTCACCTT+TGG | - | chr4_1:62815273-62815292 | None:intergenic | 40.0% | |
| ATGAGGAGATACAGATGATG+CGG | + | chr4_1:62815500-62815519 | Msa0562730:CDS | 40.0% | |
| TTCCTTGGGTGAAATTGTTC+AGG | + | chr4_1:62815572-62815591 | Msa0562730:CDS | 40.0% | |
| TCCTTGGGTGAAATTGTTCA+GGG | + | chr4_1:62815573-62815592 | Msa0562730:CDS | 40.0% | |
| ACATCAACAATCTTAGCCAC+AGG | - | chr4_1:62815604-62815623 | None:intergenic | 40.0% | |
| TTGCGAAACTCCATATGATG+AGG | + | chr4_1:62815866-62815885 | Msa0562730:intron | 40.0% | |
| TGCGAAACTCCATATGATGA+GGG | + | chr4_1:62815867-62815886 | Msa0562730:intron | 40.0% | |
| GCTACTCGAATTTGCAGAAA+GGG | - | chr4_1:62816090-62816109 | None:intergenic | 40.0% | |
| TGCTACTCGAATTTGCAGAA+AGG | - | chr4_1:62816091-62816110 | None:intergenic | 40.0% | |
| GTCTCAGATATGTGAGAAAG+TGG | - | chr4_1:62816567-62816586 | None:intergenic | 40.0% | |
| CACTTAGTTCCTTTCTGCTT+TGG | + | chr4_1:62816634-62816653 | Msa0562730:CDS | 40.0% | |
| ! | TTCCTTTCTGCTTTGGTCTT+TGG | + | chr4_1:62816641-62816660 | Msa0562730:CDS | 40.0% |
| ATCCAAAGACCAAAGCAGAA+AGG | - | chr4_1:62816646-62816665 | None:intergenic | 40.0% | |
| ! | GGATAGTATTCTTGCTGACT+TGG | + | chr4_1:62816662-62816681 | Msa0562730:CDS | 40.0% |
| !! | TACTTGTTGCACAGCCTTTT+TGG | - | chr4_1:62816715-62816734 | None:intergenic | 40.0% |
| TCTTTGTCATGAAACTGCTG+TGG | + | chr4_1:62816767-62816786 | Msa0562730:intron | 40.0% | |
| ! | TTGGTGGCTAGCGTTATTAT+TGG | - | chr4_1:62816833-62816852 | None:intergenic | 40.0% |
| TGTTCTGCCTTAGCTTAGTT+TGG | - | chr4_1:62816862-62816881 | None:intergenic | 40.0% | |
| CTAAGCTAAGGCAGAACAAT+AGG | + | chr4_1:62816864-62816883 | Msa0562730:intron | 40.0% | |
| ATGGATTCTTCAGATTCCAC+TGG | - | chr4_1:62816912-62816931 | None:intergenic | 40.0% | |
| ! | TTGGTGGCTAGCGTTATTAT+TGG | - | chr4_1:62816833-62816852 | None:intergenic | 40.0% |
| TGTTCTGCCTTAGCTTAGTT+TGG | - | chr4_1:62816862-62816881 | None:intergenic | 40.0% | |
| CTAAGCTAAGGCAGAACAAT+AGG | + | chr4_1:62816864-62816883 | Msa0562730:intron | 40.0% | |
| ATGGATTCTTCAGATTCCAC+TGG | - | chr4_1:62816912-62816931 | None:intergenic | 40.0% | |
| CCTGTCTGTGATTCAGTATA+TGG | - | chr4_1:62817070-62817089 | None:intergenic | 40.0% | |
| CCATATACTGAATCACAGAC+AGG | + | chr4_1:62817067-62817086 | Msa0562730:intron | 40.0% | |
| ! | TGGTGTAAAATTTCTGGAGG+AGG | + | chr4_1:62817160-62817179 | Msa0562730:intron | 40.0% |
| !! | GAACTTCTGTAGGTGCTATT+GGG | + | chr4_1:62817302-62817321 | Msa0562730:intron | 40.0% |
| ! | TCATGAGTGCTTTTATGACC+TGG | + | chr4_1:62817337-62817356 | Msa0562730:intron | 40.0% |
| ATCAAATGACCCTCCAAAAG+GGG | - | chr4_1:62817402-62817421 | None:intergenic | 40.0% | |
| GAATCAAATGACCCTCCAAA+AGG | - | chr4_1:62817404-62817423 | None:intergenic | 40.0% | |
| AAGACTTATCTCACTAGGTC+CGG | - | chr4_1:62817437-62817456 | None:intergenic | 40.0% | |
| ! | GTGGTTGTTGTTAGTTGTGA+CGG | + | chr4_1:62817458-62817477 | Msa0562730:intron | 40.0% |
| ! | TGACGGCATTTTGTGACTTT+GGG | + | chr4_1:62817475-62817494 | Msa0562730:intron | 40.0% |
| CAACTATTCGGAACTACCAA+AGG | - | chr4_1:62817543-62817562 | None:intergenic | 40.0% | |
| ! | CTTTGGTAGTTCCGAATAGT+TGG | + | chr4_1:62817541-62817560 | Msa0562730:intron | 40.0% |
| TTAACCTACTGGAATGGAGA+TGG | - | chr4_1:62817676-62817695 | None:intergenic | 40.0% | |
| CAACAAATATTGCAACCTGC+AGG | - | chr4_1:62817937-62817956 | None:intergenic | 40.0% | |
| !! | TAATAAGAGCATCGGGCTTT+CGG | - | chr4_1:62817979-62817998 | None:intergenic | 40.0% |
| CAACCATCCATACAATCACT+GGG | - | chr4_1:62818054-62818073 | None:intergenic | 40.0% | |
| !! | TCTCAGTTGGTTTGTATGCT+TGG | + | chr4_1:62818234-62818253 | Msa0562730:CDS | 40.0% |
| ! | TTTTGCTGACCACTATAGGT+AGG | - | chr4_1:62818271-62818290 | None:intergenic | 40.0% |
| AAAACCAAATCCCTGGATTG+CGG | - | chr4_1:62818302-62818321 | None:intergenic | 40.0% | |
| GCAACATCAATGGTACGAAA+AGG | - | chr4_1:62818371-62818390 | None:intergenic | 40.0% | |
| !! | GTTAACGGTGCTGTAAGAAA+AGG | + | chr4_1:62818460-62818479 | Msa0562730:CDS | 40.0% |
| !! | TAACGGTGCTGTAAGAAAAG+GGG | + | chr4_1:62818462-62818481 | Msa0562730:CDS | 40.0% |
| ATCAAAGTTTCCAATGCTGG+AGG | - | chr4_1:62818502-62818521 | None:intergenic | 40.0% | |
| TTTACTCTAGCTGAAGATGG+GGG | - | chr4_1:62818538-62818557 | None:intergenic | 40.0% | |
| CTTTACTCTAGCTGAAGATG+GGG | - | chr4_1:62818539-62818558 | None:intergenic | 40.0% | |
| CCTTTACTCTAGCTGAAGAT+GGG | - | chr4_1:62818540-62818559 | None:intergenic | 40.0% | |
| ACCTTTACTCTAGCTGAAGA+TGG | - | chr4_1:62818541-62818560 | None:intergenic | 40.0% | |
| TCTTCAGCTAGAGTAAAGGT+AGG | + | chr4_1:62818541-62818560 | Msa0562730:intron | 40.0% | |
| ACAGGCTACAGAAAGATTTG+AGG | + | chr4_1:62818647-62818666 | Msa0562730:intron | 40.0% | |
| CTCTCTCAGAATGGGATATA+TGG | - | chr4_1:62818673-62818692 | None:intergenic | 40.0% | |
| ! | CATATATCCCATTCTGAGAG+AGG | + | chr4_1:62818671-62818690 | Msa0562730:CDS | 40.0% |
| AATTTCGCTATCATAGCAGC+AGG | + | chr4_1:62818753-62818772 | Msa0562730:CDS | 40.0% | |
| AAGCAGCTTCTATTGCACTT+TGG | + | chr4_1:62818905-62818924 | Msa0562730:CDS | 40.0% | |
| CACTGAATGCTACAAGCTAT+GGG | + | chr4_1:62818942-62818961 | Msa0562730:CDS | 40.0% | |
| AAAGCTTTCTGATGACTGGA+AGG | + | chr4_1:62819196-62819215 | Msa0562730:CDS | 40.0% | |
| GGGAGATCCTAAAGAACTTT+AGG | + | chr4_1:62819255-62819274 | Msa0562730:CDS | 40.0% | |
| TCTATCCGTCTATTGCATCT+AGG | + | chr4_1:62819317-62819336 | Msa0562730:intron | 40.0% | |
| GTGATCCTAGATGCAATAGA+CGG | - | chr4_1:62819325-62819344 | None:intergenic | 40.0% | |
| ! | TCAAAAATGACTTGCACCCA+TGG | - | chr4_1:62819495-62819514 | None:intergenic | 40.0% |
| !!! | TGTTGTTTTCTACCCCAACT+TGG | + | chr4_1:62819546-62819565 | Msa0562730:CDS | 40.0% |
| TATTTGATGCAACCAACTGC+CGG | - | chr4_1:62819645-62819664 | None:intergenic | 40.0% | |
| TCAGCTTACATCAACCACAA+TGG | + | chr4_1:62819677-62819696 | Msa0562730:three_prime_UTR | 40.0% | |
| CAGCTTACATCAACCACAAT+GGG | + | chr4_1:62819678-62819697 | Msa0562730:three_prime_UTR | 40.0% | |
| CAGATGACACAGAATAGTTG+AGG | + | chr4_1:62819770-62819789 | Msa0562730:three_prime_UTR | 40.0% | |
| !! | TTGAGGTCAATGCTACTTTG+AGG | + | chr4_1:62819787-62819806 | Msa0562730:three_prime_UTR | 40.0% |
| ! | TCCTTTCCCCTATCTTTTCT+CGG | + | chr4_1:62820062-62820081 | Msa0562730:three_prime_UTR | 40.0% |
| GAAGAACCGAGAAAAGATAG+GGG | - | chr4_1:62820071-62820090 | None:intergenic | 40.0% | |
| TCGATAAAGATCCGGAATTC+AGG | + | chr4_1:62820138-62820157 | Msa0562730:three_prime_UTR | 40.0% | |
| TCACTCAGTATCCTGAATTC+CGG | - | chr4_1:62820152-62820171 | None:intergenic | 40.0% | |
| TTGAAAAGGGGGGTGAGAAA+GGG | - | chr4_1:62814864-62814883 | None:intergenic | 45.0% | |
| ATTGAAAAGGGGGGTGAGAA+AGG | - | chr4_1:62814865-62814884 | None:intergenic | 45.0% | |
| AGATGAGGAGTTAGATTCGG+CGG | - | chr4_1:62814929-62814948 | None:intergenic | 45.0% | |
| CTTCTTATGCTTCTTCGCGT+AGG | - | chr4_1:62814983-62815002 | None:intergenic | 45.0% | |
| ! | CGCGAAGAAGCATAAGAAGA+AGG | + | chr4_1:62814984-62815003 | Msa0562730:CDS | 45.0% |
| ! | CAAGTCGCTTGAGTTGCATT+CGG | + | chr4_1:62815068-62815087 | Msa0562730:CDS | 45.0% |
| ! | TTGAGTTGCATTCGGAGGAT+CGG | + | chr4_1:62815076-62815095 | Msa0562730:CDS | 45.0% |
| TCGGAGAAGGAAAATTCTCG+AGG | + | chr4_1:62815095-62815114 | Msa0562730:CDS | 45.0% | |
| GAAGGAAAATTCTCGAGGCA+AGG | + | chr4_1:62815100-62815119 | Msa0562730:CDS | 45.0% | |
| !! | GGCTGAATTTGATGATGCTC+CGG | + | chr4_1:62815134-62815153 | Msa0562730:CDS | 45.0% |
| ! | CGATGAAGACGATGATGATG+TGG | + | chr4_1:62815197-62815216 | Msa0562730:CDS | 45.0% |
| ! | ATGATGATGTGGATCGGTCA+GGG | + | chr4_1:62815208-62815227 | Msa0562730:CDS | 45.0% |
| GGAGAATGGAAAAGCTGAAG+AGG | + | chr4_1:62815230-62815249 | Msa0562730:CDS | 45.0% | |
| GGTGAAGAAACCTAAGGTGA+CGG | + | chr4_1:62815275-62815294 | Msa0562730:CDS | 45.0% | |
| GAAGATTGATGCAGCTGATC+TGG | + | chr4_1:62815314-62815333 | Msa0562730:CDS | 45.0% | |
| TCCCTGAACAATTTCACCCA+AGG | - | chr4_1:62815577-62815596 | None:intergenic | 45.0% | |
| TGGAGTTTCGCAATGCAAAG+AGG | - | chr4_1:62815859-62815878 | None:intergenic | 45.0% | |
| CAGTTGACTGGATCAATCGT+CGG | + | chr4_1:62816601-62816620 | Msa0562730:CDS | 45.0% | |
| AGAAAGGAACTAAGTGCCTC+GGG | - | chr4_1:62816630-62816649 | None:intergenic | 45.0% | |
| CAGAAAGGAACTAAGTGCCT+CGG | - | chr4_1:62816631-62816650 | None:intergenic | 45.0% | |
| !!! | CTTTTTGGAACCCTTGGTCA+CGG | - | chr4_1:62816700-62816719 | None:intergenic | 45.0% |
| TGTTCACTATTAAGGGCCAG+TGG | + | chr4_1:62816893-62816912 | Msa0562730:intron | 45.0% | |
| TGTTCACTATTAAGGGCCAG+TGG | + | chr4_1:62816893-62816912 | Msa0562730:intron | 45.0% | |
| ACCATTGTGGCACGTATGAA+GGG | - | chr4_1:62817144-62817163 | None:intergenic | 45.0% | |
| ! | GGAACTTCTGTAGGTGCTAT+TGG | + | chr4_1:62817301-62817320 | Msa0562730:intron | 45.0% |
| GGACCTAGTGAGATAAGTCT+TGG | + | chr4_1:62817436-62817455 | Msa0562730:intron | 45.0% | |
| CCACCAAGACTTATCTCACT+AGG | - | chr4_1:62817442-62817461 | None:intergenic | 45.0% | |
| CCTAGTGAGATAAGTCTTGG+TGG | + | chr4_1:62817439-62817458 | Msa0562730:intron | 45.0% | |
| ! | GTGACGGCATTTTGTGACTT+TGG | + | chr4_1:62817474-62817493 | Msa0562730:intron | 45.0% |
| ! | GACGGCATTTTGTGACTTTG+GGG | + | chr4_1:62817476-62817495 | Msa0562730:intron | 45.0% |
| ! | ACGGCATTTTGTGACTTTGG+GGG | + | chr4_1:62817477-62817496 | Msa0562730:intron | 45.0% |
| CTATTCGGAACTACCAAAGG+TGG | - | chr4_1:62817540-62817559 | None:intergenic | 45.0% | |
| TGTATTGCCCAAATTGAGGG+AGG | + | chr4_1:62818000-62818019 | Msa0562730:CDS | 45.0% | |
| ACTCCCAGTGATTGTATGGA+TGG | + | chr4_1:62818048-62818067 | Msa0562730:CDS | 45.0% | |
| GCAACCATCCATACAATCAC+TGG | - | chr4_1:62818055-62818074 | None:intergenic | 45.0% | |
| GATTGTATGGATGGTTGCTC+AGG | + | chr4_1:62818057-62818076 | Msa0562730:CDS | 45.0% | |
| ATCTACGTGTAGGCTTCAGT+AGG | + | chr4_1:62818206-62818225 | Msa0562730:intron | 45.0% | |
| TCAGTAGGAGATCTCTCAGT+TGG | + | chr4_1:62818221-62818240 | Msa0562730:CDS | 45.0% | |
| !! | TTGGTTTGTATGCTTGGTCG+CGG | + | chr4_1:62818240-62818259 | Msa0562730:CDS | 45.0% |
| !! | CCACTTTTGCTGACCACTAT+AGG | - | chr4_1:62818275-62818294 | None:intergenic | 45.0% |
| CCTATAGTGGTCAGCAAAAG+TGG | + | chr4_1:62818272-62818291 | Msa0562730:CDS | 45.0% | |
| AAACCAAATCCCTGGATTGC+GGG | - | chr4_1:62818301-62818320 | None:intergenic | 45.0% | |
| AAGCTGCAAAACCAAATCCC+TGG | - | chr4_1:62818309-62818328 | None:intergenic | 45.0% | |
| !!! | GGATTTGGTTTTGCAGCTTG+TGG | + | chr4_1:62818310-62818329 | Msa0562730:CDS | 45.0% |
| ATCAATGGTACGAAAAGGGG+TGG | - | chr4_1:62818366-62818385 | None:intergenic | 45.0% | |
| GGTGAAGATGGCAACATCAA+TGG | - | chr4_1:62818381-62818400 | None:intergenic | 45.0% | |
| ! | TTTTGTCCACCCCTAAAGCA+CGG | + | chr4_1:62818428-62818447 | Msa0562730:CDS | 45.0% |
| ! | ATTGATTCCTCCTCCAGCAT+TGG | + | chr4_1:62818489-62818508 | Msa0562730:CDS | 45.0% |
| AAAGTTTCCAATGCTGGAGG+AGG | - | chr4_1:62818499-62818518 | None:intergenic | 45.0% | |
| CGGATCAAAGTTTCCAATGC+TGG | - | chr4_1:62818505-62818524 | None:intergenic | 45.0% | |
| AAGATGGGGGGAAAGTAACA+CGG | - | chr4_1:62818525-62818544 | None:intergenic | 45.0% | |
| TTACTCTAGCTGAAGATGGG+GGG | - | chr4_1:62818537-62818556 | None:intergenic | 45.0% | |
| CCCATCTTCAGCTAGAGTAA+AGG | + | chr4_1:62818537-62818556 | Msa0562730:CDS | 45.0% | |
| AGTAAAGGTAGGTGTTCAGC+TGG | + | chr4_1:62818552-62818571 | Msa0562730:intron | 45.0% | |
| !! | GGCTCTGGTGTTTTTGCATT+TGG | + | chr4_1:62818573-62818592 | Msa0562730:intron | 45.0% |
| ! | ATATCCCATTCTGAGAGAGG+TGG | + | chr4_1:62818674-62818693 | Msa0562730:CDS | 45.0% |
| ! | GATGAACCGAGTGCTTTAGA+AGG | + | chr4_1:62818830-62818849 | Msa0562730:intron | 45.0% |
| TTCGATACTCCAGGATTGTC+TGG | - | chr4_1:62818883-62818902 | None:intergenic | 45.0% | |
| GCTTGTAGCATTCAGTGCTT+TGG | - | chr4_1:62818939-62818958 | None:intergenic | 45.0% | |
| GCACTGAATGCTACAAGCTA+TGG | + | chr4_1:62818941-62818960 | Msa0562730:CDS | 45.0% | |
| TGAGCAGGAGAAAGTTTACC+AGG | + | chr4_1:62819142-62819161 | Msa0562730:intron | 45.0% | |
| !! | TTCTTTAGGATCTCCCTGAG+TGG | - | chr4_1:62819251-62819270 | None:intergenic | 45.0% |
| GAATATATCGCGCAGACAGA+TGG | - | chr4_1:62819299-62819318 | None:intergenic | 45.0% | |
| ATCTCAGGAAGAGTTTCACG+AGG | + | chr4_1:62819469-62819488 | Msa0562730:CDS | 45.0% | |
| CTACCCCAACTTGGAATCTT+TGG | + | chr4_1:62819555-62819574 | Msa0562730:CDS | 45.0% | |
| ! | TGCTGTAGTTTTCAACTCCC+AGG | + | chr4_1:62819591-62819610 | Msa0562730:CDS | 45.0% |
| ATTCTCGATTGCTCAGACCT+GGG | - | chr4_1:62819611-62819630 | None:intergenic | 45.0% | |
| TATTCTCGATTGCTCAGACC+TGG | - | chr4_1:62819612-62819631 | None:intergenic | 45.0% | |
| TATTGTGCATTACCGGCAGT+TGG | + | chr4_1:62819630-62819649 | Msa0562730:three_prime_UTR | 45.0% | |
| !! | TTGGTTTGCTGTACCCATTG+TGG | - | chr4_1:62819694-62819713 | None:intergenic | 45.0% |
| ATGCCTTTACATCACCATGC+TGG | + | chr4_1:62819888-62819907 | Msa0562730:three_prime_UTR | 45.0% | |
| ! | TTGCCAGCATGGTGATGTAA+AGG | - | chr4_1:62819894-62819913 | None:intergenic | 45.0% |
| ! | TCATTGGCATTTTGCCAGCA+TGG | - | chr4_1:62819905-62819924 | None:intergenic | 45.0% |
| ATGCTGGCAAAATGCCAATG+AGG | + | chr4_1:62819904-62819923 | Msa0562730:three_prime_UTR | 45.0% | |
| TACAGGTGTAGTTGCCTCAT+TGG | - | chr4_1:62819921-62819940 | None:intergenic | 45.0% | |
| AAAGATAGGGGAAAGGACAC+AGG | - | chr4_1:62820059-62820078 | None:intergenic | 45.0% | |
| ACCGAGAAAAGATAGGGGAA+AGG | - | chr4_1:62820066-62820085 | None:intergenic | 45.0% | |
| ! | CACTTGTTGAGCTCGTCATT+TGG | + | chr4_1:62820115-62820134 | Msa0562730:three_prime_UTR | 45.0% |
| !! | TTATTATTATTATTATTAAG+TGG | + | chr4_1:62815757-62815776 | Msa0562730:intron | 5.0% |
| !! | TATTATTATTATTATTAAGT+GGG | + | chr4_1:62815758-62815777 | Msa0562730:intron | 5.0% |
| GGGGTGAGAAAGGGATTGAA+AGG | - | chr4_1:62814855-62814874 | None:intergenic | 50.0% | |
| ! | CTCACCCCCCTTTTCAATCA+TGG | + | chr4_1:62814867-62814886 | Msa0562730:CDS | 50.0% |
| GATGAAAACTACACCCCCTC+CGG | + | chr4_1:62814889-62814908 | Msa0562730:CDS | 50.0% | |
| !! | GGTGAGTTTGTTACCGGTAC+CGG | - | chr4_1:62815025-62815044 | None:intergenic | 50.0% |
| AATTCTCGAGGCAAGGACTG+CGG | + | chr4_1:62815107-62815126 | Msa0562730:CDS | 50.0% | |
| GATCGCTGCTTCGATCTAAC+CGG | - | chr4_1:62815156-62815175 | None:intergenic | 50.0% | |
| ! | GATGATGATGTGGATCGGTC+AGG | + | chr4_1:62815207-62815226 | Msa0562730:CDS | 50.0% |
| ! | TGATGATGTGGATCGGTCAG+GGG | + | chr4_1:62815209-62815228 | Msa0562730:CDS | 50.0% |
| ! | GAAGAAACCTAAGGTGACGG+TGG | + | chr4_1:62815278-62815297 | Msa0562730:CDS | 50.0% |
| GGCATCGTTTGAGCAGAATG+AGG | + | chr4_1:62815483-62815502 | Msa0562730:intron | 50.0% | |
| ATTGTTCAGGGAGTCACCTG+TGG | + | chr4_1:62815585-62815604 | Msa0562730:CDS | 50.0% | |
| ! | CTGGCACGTTTTCCTTTACG+AGG | - | chr4_1:62816126-62816145 | None:intergenic | 50.0% |
| CGTGACCAAGGGTTCCAAAA+AGG | + | chr4_1:62816698-62816717 | Msa0562730:CDS | 50.0% | |
| !!! | CACAGCCTTTTTGGAACCCT+TGG | - | chr4_1:62816706-62816725 | None:intergenic | 50.0% |
| ACCCTTCATACGTGCCACAA+TGG | + | chr4_1:62817140-62817159 | Msa0562730:intron | 50.0% | |
| CACCATTGTGGCACGTATGA+AGG | - | chr4_1:62817145-62817164 | None:intergenic | 50.0% | |
| CTTATCTCACTAGGTCCGGT+TGG | - | chr4_1:62817433-62817452 | None:intergenic | 50.0% | |
| CCAAAGGTGGACAACGACAA+TGG | - | chr4_1:62817527-62817546 | None:intergenic | 50.0% | |
| CCATTGTCGTTGTCCACCTT+TGG | + | chr4_1:62817524-62817543 | Msa0562730:intron | 50.0% | |
| GCTTCCATCTCCATTCCAGT+AGG | + | chr4_1:62817669-62817688 | Msa0562730:intron | 50.0% | |
| TATGGATGGTTGCTCAGGTG+AGG | + | chr4_1:62818062-62818081 | Msa0562730:intron | 50.0% | |
| GCGGAATCTCCTACCTATAG+TGG | + | chr4_1:62818259-62818278 | Msa0562730:CDS | 50.0% | |
| TGGTACGAAAAGGGGTGGAA+AGG | - | chr4_1:62818361-62818380 | None:intergenic | 50.0% | |
| TTTGTCCACCCCTAAAGCAC+GGG | + | chr4_1:62818429-62818448 | Msa0562730:CDS | 50.0% | |
| CAAAACAGCCCGTGCTTTAG+GGG | - | chr4_1:62818440-62818459 | None:intergenic | 50.0% | |
| CCAAAACAGCCCGTGCTTTA+GGG | - | chr4_1:62818441-62818460 | None:intergenic | 50.0% | |
| ACCAAAACAGCCCGTGCTTT+AGG | - | chr4_1:62818442-62818461 | None:intergenic | 50.0% | |
| !!! | GCACGGGCTGTTTTGGTTAA+CGG | + | chr4_1:62818445-62818464 | Msa0562730:CDS | 50.0% |
| AGAGCCACCTCTCTCAGAAT+GGG | - | chr4_1:62818681-62818700 | None:intergenic | 50.0% | |
| AAGAGCCACCTCTCTCAGAA+TGG | - | chr4_1:62818682-62818701 | None:intergenic | 50.0% | |
| ! | ATTCTGAGAGAGGTGGCTCT+TGG | + | chr4_1:62818681-62818700 | Msa0562730:CDS | 50.0% |
| GCTATCATAGCAGCAGGAGA+AGG | + | chr4_1:62818759-62818778 | Msa0562730:CDS | 50.0% | |
| TCATAGCAGCAGGAGAAGGT+TGG | + | chr4_1:62818763-62818782 | Msa0562730:intron | 50.0% | |
| GCTGCTTCTTTCGATACTCC+AGG | - | chr4_1:62818892-62818911 | None:intergenic | 50.0% | |
| ! | CGCTTGCTACAATGTTCTCC+TGG | - | chr4_1:62819163-62819182 | None:intergenic | 50.0% |
| TGTCTCCTTATGAGCCACTC+AGG | + | chr4_1:62819234-62819253 | Msa0562730:CDS | 50.0% | |
| GTCTCCTTATGAGCCACTCA+GGG | + | chr4_1:62819235-62819254 | Msa0562730:CDS | 50.0% | |
| ATCTCCCTGAGTGGCTCATA+AGG | - | chr4_1:62819242-62819261 | None:intergenic | 50.0% | |
| GAAGAGTTTCACGAGGCCAT+GGG | + | chr4_1:62819476-62819495 | Msa0562730:CDS | 50.0% | |
| TCAGGATACTGAGTGAGCGA+AGG | + | chr4_1:62820156-62820175 | Msa0562730:three_prime_UTR | 50.0% | |
| GGAGTTAGATTCGGCGGTGT+GGG | - | chr4_1:62814923-62814942 | None:intergenic | 55.0% | |
| AGGAGTTAGATTCGGCGGTG+TGG | - | chr4_1:62814924-62814943 | None:intergenic | 55.0% | |
| AGCAGCGTCGTTTCCGTTGA+AGG | - | chr4_1:62815046-62815065 | None:intergenic | 55.0% | |
| ! | GTCGCTTGAGTTGCATTCGG+AGG | + | chr4_1:62815071-62815090 | Msa0562730:CDS | 55.0% |
| TGCATTCGGAGGATCGGAGA+AGG | + | chr4_1:62815082-62815101 | Msa0562730:CDS | 55.0% | |
| ! | GAAACCTAAGGTGACGGTGG+CGG | + | chr4_1:62815281-62815300 | Msa0562730:CDS | 55.0% |
| TCAGCGCTGCTCAGTTTCCT+TGG | + | chr4_1:62815557-62815576 | Msa0562730:CDS | 55.0% | |
| CAGCGCTGCTCAGTTTCCTT+GGG | + | chr4_1:62815558-62815577 | Msa0562730:CDS | 55.0% | |
| TAGCCAGCAAACCGTGACCA+AGG | + | chr4_1:62816686-62816705 | Msa0562730:CDS | 55.0% | |
| AGCCAGCAAACCGTGACCAA+GGG | + | chr4_1:62816687-62816706 | Msa0562730:CDS | 55.0% | |
| AACCCTTGGTCACGGTTTGC+TGG | - | chr4_1:62816692-62816711 | None:intergenic | 55.0% | |
| AAAGTGGCAACCCGCAATCC+AGG | + | chr4_1:62818288-62818307 | Msa0562730:CDS | 55.0% | |
| AAGTGGCAACCCGCAATCCA+GGG | + | chr4_1:62818289-62818308 | Msa0562730:CDS | 55.0% | |
| CAACCCGCAATCCAGGGATT+TGG | + | chr4_1:62818295-62818314 | Msa0562730:CDS | 55.0% | |
| !! | CCCTAAAGCACGGGCTGTTT+TGG | + | chr4_1:62818438-62818457 | Msa0562730:CDS | 55.0% |
| GGAAGAGTTTCACGAGGCCA+TGG | + | chr4_1:62819475-62819494 | Msa0562730:CDS | 55.0% | |
| ! | GACCTTTACCGTGCTTGCTG+TGG | + | chr4_1:62819513-62819532 | Msa0562730:CDS | 55.0% |
| AGCCACAGCAAGCACGGTAA+AGG | - | chr4_1:62819518-62819537 | None:intergenic | 55.0% | |
| ACCAACAGCCACAGCAAGCA+CGG | - | chr4_1:62819524-62819543 | None:intergenic | 55.0% | |
| TGTGGGAGATGGATCCGGAG+GGG | - | chr4_1:62814906-62814925 | None:intergenic | 60.0% | |
| GTGTGGGAGATGGATCCGGA+GGG | - | chr4_1:62814907-62814926 | None:intergenic | 60.0% | |
| AGATTCGGCGGTGTGGGAGA+TGG | - | chr4_1:62814917-62814936 | None:intergenic | 60.0% | |
| !! | TCATCTCACGGCGCCGATCA+CGG | + | chr4_1:62814943-62814962 | Msa0562730:CDS | 60.0% |
| GACCTTCTGCCAGCCGTGAT+CGG | - | chr4_1:62814959-62814978 | None:intergenic | 60.0% | |
| AAGGAAGCTAACGGCGTCGC+CGG | + | chr4_1:62815003-62815022 | Msa0562730:CDS | 60.0% | |
| GTGGATCGGTCAGGGGAGAA+TGG | + | chr4_1:62815216-62815235 | Msa0562730:CDS | 60.0% | |
| GATCAATCGTCGGTCTCCCG+AGG | + | chr4_1:62816611-62816630 | Msa0562730:CDS | 60.0% | |
| !! | AACAGCCCGTGCTTTAGGGG+TGG | - | chr4_1:62818437-62818456 | None:intergenic | 60.0% |
| ! | GGTAGGTGTTCAGCTGGCTC+TGG | + | chr4_1:62818558-62818577 | Msa0562730:intron | 60.0% |
| CTGAGAGAGGTGGCTCTTGG+CGG | + | chr4_1:62818684-62818703 | Msa0562730:CDS | 60.0% | |
| !! | ACCGTGCTTGCTGTGGCTGT+TGG | + | chr4_1:62819520-62819539 | Msa0562730:CDS | 60.0% |
| GTGGGAGATGGATCCGGAGG+GGG | - | chr4_1:62814905-62814924 | None:intergenic | 65.0% | |
| GGTGTGGGAGATGGATCCGG+AGG | - | chr4_1:62814908-62814927 | None:intergenic | 65.0% | |
| GGCGGTGTGGGAGATGGATC+CGG | - | chr4_1:62814911-62814930 | None:intergenic | 65.0% | |
| GTGATCGGCGCCGTGAGATG+AGG | - | chr4_1:62814944-62814963 | None:intergenic | 65.0% | |
| TCTCGAGGCAAGGACTGCGG+CGG | + | chr4_1:62815110-62815129 | Msa0562730:CDS | 65.0% | |
| GCTTCCGCCACCGTCACCTT+AGG | - | chr4_1:62815288-62815307 | None:intergenic | 65.0% | |
| GTGGCTCTTGGCGGTTCTCC+TGG | + | chr4_1:62818693-62818712 | Msa0562730:CDS | 65.0% | |
| CGCCGATCACGGCTGGCAGA+AGG | + | chr4_1:62814954-62814973 | Msa0562730:CDS | 70.0% | |
| GCTAACGGCGTCGCCGGTAC+CGG | + | chr4_1:62815009-62815028 | Msa0562730:CDS | 70.0% | |
| !! | CTCACGGCGCCGATCACGGC+TGG | + | chr4_1:62814947-62814966 | Msa0562730:CDS | 75.0% |
| CGAGGCAAGGACTGCGGCGG+AGG | + | chr4_1:62815113-62815132 | Msa0562730:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 62814728 | 62820256 | 62814728 | ID=Msa0562730;Name=Msa0562730 |
| chr4_1 | mRNA | 62814728 | 62820256 | 62814728 | ID=Msa0562730-mRNA-1;Parent=Msa0562730;Name=Msa0562730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|0.8|0.90|0.90|1|1|11|638|652 |
| chr4_1 | exon | 62814728 | 62815359 | 62814728 | ID=Msa0562730-mRNA-1:exon:19840;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62815484 | 62815621 | 62815484 | ID=Msa0562730-mRNA-1:exon:19841;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62816561 | 62816749 | 62816561 | ID=Msa0562730-mRNA-1:exon:19842;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62817600 | 62817686 | 62817600 | ID=Msa0562730-mRNA-1:exon:19843;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62817941 | 62818078 | 62817941 | ID=Msa0562730-mRNA-1:exon:19844;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62818218 | 62818336 | 62818218 | ID=Msa0562730-mRNA-1:exon:19845;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62818426 | 62818558 | 62818426 | ID=Msa0562730-mRNA-1:exon:19846;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62818651 | 62818780 | 62818651 | ID=Msa0562730-mRNA-1:exon:19847;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62818884 | 62818963 | 62818884 | ID=Msa0562730-mRNA-1:exon:19848;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62819149 | 62819283 | 62819149 | ID=Msa0562730-mRNA-1:exon:19849;Parent=Msa0562730-mRNA-1 |
| chr4_1 | exon | 62819391 | 62820256 | 62819391 | ID=Msa0562730-mRNA-1:exon:19850;Parent=Msa0562730-mRNA-1 |
| chr4_1 | five_prime_UTR | 62814728 | 62814777 | 62814728 | ID=Msa0562730-mRNA-1:five_prime_utr;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62814778 | 62815359 | 62814778 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62815484 | 62815621 | 62815484 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62816561 | 62816749 | 62816561 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62817600 | 62817686 | 62817600 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62817941 | 62818078 | 62817941 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62818218 | 62818336 | 62818218 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62818426 | 62818558 | 62818426 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62818651 | 62818780 | 62818651 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62818884 | 62818963 | 62818884 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62819149 | 62819283 | 62819149 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | CDS | 62819391 | 62819618 | 62819391 | ID=Msa0562730-mRNA-1:cds;Parent=Msa0562730-mRNA-1 |
| chr4_1 | three_prime_UTR | 62819619 | 62820256 | 62819619 | ID=Msa0562730-mRNA-1:three_prime_utr;Parent=Msa0562730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
