AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004180 MtrunA17_Chr1g0156491 96.835 158 4 1 1 158 1 157 3.71e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004180 AT1G75690.1 75.497 151 34 3 8 158 7 154 2.61e-78 229

Find 56 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTATCTATGTAAAATTT+TGG 0.181569 1_1:+6647034 Msa0004180:three_prime_UTR
AATGAGTTTACTATCTTAAA+TGG 0.210653 1_1:+6647178 Msa0004180:three_prime_UTR
AGATTGAGGGGCACTGATTT+TGG 0.211384 1_1:+6646877 Msa0004180:three_prime_UTR
GGGCTGCGTGTTATCTCTTT+TGG 0.263030 1_1:-6645570 None:intergenic
TGCTTCCCATGCAATGGTTC+TGG 0.280691 1_1:+6645593 Msa0004180:CDS
ATGTACTCATTCAATTTCTT+TGG 0.295039 1_1:+6646917 Msa0004180:three_prime_UTR
TAGGCATAGTTACTTTCTCC+TGG 0.364821 1_1:-6647121 None:intergenic
CGTGGATAAAATGTGGGTTT+TGG 0.374056 1_1:-6645229 None:intergenic
TTGAGTGTGGCTGTTGGAAT+TGG 0.393770 1_1:+6645399 Msa0004180:CDS
CAAAATTCAATCTTTACAAC+AGG 0.416741 1_1:-6647084 None:intergenic
AGAACCATTGCATGGGAAGC+AGG 0.424768 1_1:-6645591 None:intergenic
AAGTTCAACAGTCACATTAC+CGG 0.426738 1_1:-6646562 None:intergenic
CAGGTAGTTGCTATAACTGT+TGG 0.428401 1_1:+6645372 Msa0004180:intron
AACTAAGTGTTGAATGTGTT+AGG 0.436200 1_1:-6645078 None:intergenic
GTTATGTTGATGCTTTCATT+TGG 0.457520 1_1:+6646970 Msa0004180:three_prime_UTR
GTAGTAGATAAGGATTTAAG+AGG 0.469567 1_1:-6645178 None:intergenic
AAGAGGAGAAGAAAGAAAAG+TGG 0.471069 1_1:-6645161 None:intergenic
TGTACAACTTGTCAAGGATC+TGG 0.478203 1_1:+6646645 Msa0004180:CDS
AGAAAAGTGGAATGTAATTG+AGG 0.481069 1_1:-6645148 None:intergenic
AGGCATAGTTACTTTCTCCT+GGG 0.485729 1_1:-6647120 None:intergenic
AGGGAGTGGCCTAATATCAT+TGG 0.501462 1_1:-6647006 None:intergenic
CTGAGAGAAGCTAAGATTGA+GGG 0.505701 1_1:+6646864 Msa0004180:exon
TTTAATACGTGGATAAAATG+TGG 0.513316 1_1:-6645236 None:intergenic
TTACATAGATAGGTCATGAA+AGG 0.516871 1_1:-6647026 None:intergenic
TTTGTTGTGCATATGGCCCC+AGG 0.518457 1_1:+6647103 Msa0004180:three_prime_UTR
TAATTGTGTAGTAGTAGATA+AGG 0.518803 1_1:-6645188 None:intergenic
TACATAGATAGGTCATGAAA+GGG 0.519051 1_1:-6647025 None:intergenic
TTAATACGTGGATAAAATGT+GGG 0.525605 1_1:-6645235 None:intergenic
ACTGAGAGAAGCTAAGATTG+AGG 0.542735 1_1:+6646863 Msa0004180:exon
CAGCCCTGCTTCCCATGCAA+TGG 0.546625 1_1:+6645587 Msa0004180:CDS
GAACACCGTACCTACGATCA+AGG 0.554130 1_1:-6646683 None:intergenic
AACAACGGTGATAGTTATGT+AGG 0.558549 1_1:-6647140 None:intergenic
GGTAATGTGACTGTTGAACT+TGG 0.571939 1_1:+6646564 Msa0004180:CDS
GAACCATTGCATGGGAAGCA+GGG 0.571952 1_1:-6645590 None:intergenic
ATTTGTGATTCATAAAACAC+TGG 0.577782 1_1:-6645426 None:intergenic
ATAACTTTGATAGTTATATG+TGG 0.581363 1_1:-6646952 None:intergenic
TGAACTTGGTGGAGCTGAGA+CGG 0.581832 1_1:+6646578 Msa0004180:CDS
GTGACAGCTTCACCACTGAA+TGG 0.583875 1_1:+6644998 Msa0004180:five_prime_UTR
CTGCATAAATTGTGATGGTG+CGG 0.586364 1_1:+6646611 Msa0004180:CDS
AGATAGGTCATGAAAGGGAG+TGG 0.587821 1_1:-6647020 None:intergenic
TGCATAAATTGTGATGGTGC+GGG 0.591712 1_1:+6646612 Msa0004180:CDS
CGAGCTCCAGAACCATTGCA+TGG 0.592093 1_1:-6645599 None:intergenic
GGCATAGTTACTTTCTCCTG+GGG 0.597615 1_1:-6647119 None:intergenic
TCTCGCTGCATAAATTGTGA+TGG 0.600927 1_1:+6646606 Msa0004180:CDS
ATCAATCATCATCCATTCAG+TGG 0.610636 1_1:-6645010 None:intergenic
CTGACATGTACAACTTGTCA+AGG 0.612986 1_1:+6646639 Msa0004180:CDS
GTGTTGAATGTGTTAGGCAA+TGG 0.621072 1_1:-6645072 None:intergenic
ACTTGGTGGAGCTGAGACGG+AGG 0.632275 1_1:+6646581 Msa0004180:CDS
AGTTCAAGAGCTTTAATACG+TGG 0.639758 1_1:-6645247 None:intergenic
AACCTCGTTACCTTGATCGT+AGG 0.640316 1_1:+6646673 Msa0004180:CDS
GCTGTCACAACCACATGACA+TGG 0.642254 1_1:-6644983 None:intergenic
GAGCTCCAGAACCATTGCAT+GGG 0.645320 1_1:-6645598 None:intergenic
AATGTGACTGTTGAACTTGG+TGG 0.646977 1_1:+6646567 Msa0004180:CDS
TGAGAGAAGCTAAGATTGAG+GGG 0.652158 1_1:+6646865 Msa0004180:exon
TCTTGAACTTGATCAAAACA+CGG 0.674004 1_1:+6645261 Msa0004180:CDS
TACCTACGATCAAGGTAACG+AGG 0.728545 1_1:-6646675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATAGTAATAAATAAA+TGG - chr1_1:6645476-6645495 None:intergenic 10.0%
!! CAACAAATTAAAAAAAAAAA+AGG - chr1_1:6645546-6645565 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG - chr1_1:6646305-6646324 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG - chr1_1:6646720-6646739 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG - chr1_1:6646721-6646740 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG - chr1_1:6646722-6646741 None:intergenic 10.0%
!! ATGATATAGTAATAAATAAA+TGG - chr1_1:6645476-6645495 None:intergenic 10.0%
!! CAACAAATTAAAAAAAAAAA+AGG - chr1_1:6645546-6645565 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG - chr1_1:6646305-6646324 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG - chr1_1:6646720-6646739 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG - chr1_1:6646721-6646740 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG - chr1_1:6646722-6646741 None:intergenic 10.0%
!! TATATCATATAATAATGTGT+TGG + chr1_1:6645488-6645507 Msa0004180:intron 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG + chr1_1:6645547-6645566 Msa0004180:intron 15.0%
!! AAGTTAAATTATATAACTTC+TGG + chr1_1:6646073-6646092 Msa0004180:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG + chr1_1:6646347-6646366 Msa0004180:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG - chr1_1:6646354-6646373 None:intergenic 15.0%
!! TATATCATATAATAATGTGT+TGG + chr1_1:6645488-6645507 Msa0004180:intron 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG + chr1_1:6645547-6645566 Msa0004180:intron 15.0%
!! AAGTTAAATTATATAACTTC+TGG + chr1_1:6646073-6646092 Msa0004180:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG + chr1_1:6646347-6646366 Msa0004180:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG - chr1_1:6646354-6646373 None:intergenic 15.0%
!! TGAATGAATGAATAAGAAAT+AGG - chr1_1:6645303-6645322 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG + chr1_1:6645656-6645675 Msa0004180:intron 20.0%
!!! CTATAAGCATATAAACTTTT+TGG - chr1_1:6645861-6645880 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG + chr1_1:6645859-6645878 Msa0004180:intron 20.0%
!!! TGTGGATAAGTTTTTTTTAT+AGG + chr1_1:6645889-6645908 Msa0004180:intron 20.0%
!!! TAAGTTTTTTTTATAGGTAG+TGG + chr1_1:6645895-6645914 Msa0004180:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG + chr1_1:6646036-6646055 Msa0004180:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG - chr1_1:6646505-6646524 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG - chr1_1:6646955-6646974 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG + chr1_1:6646997-6647016 Msa0004180:three_prime_UTR 20.0%
!! TACAAAAACATAATCAACAA+CGG - chr1_1:6647158-6647177 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG + chr1_1:6647178-6647197 Msa0004180:three_prime_UTR 20.0%
!! TGAATGAATGAATAAGAAAT+AGG - chr1_1:6645303-6645322 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG + chr1_1:6645656-6645675 Msa0004180:intron 20.0%
!!! CTATAAGCATATAAACTTTT+TGG - chr1_1:6645861-6645880 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG + chr1_1:6645859-6645878 Msa0004180:intron 20.0%
!!! TGTGGATAAGTTTTTTTTAT+AGG + chr1_1:6645889-6645908 Msa0004180:intron 20.0%
!!! TAAGTTTTTTTTATAGGTAG+TGG + chr1_1:6645895-6645914 Msa0004180:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG + chr1_1:6646036-6646055 Msa0004180:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG - chr1_1:6646505-6646524 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG - chr1_1:6646955-6646974 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG + chr1_1:6646997-6647016 Msa0004180:three_prime_UTR 20.0%
!! TACAAAAACATAATCAACAA+CGG - chr1_1:6647158-6647177 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG + chr1_1:6647178-6647197 Msa0004180:three_prime_UTR 20.0%
! TAATTGTGTAGTAGTAGATA+AGG - chr1_1:6645191-6645210 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG - chr1_1:6645238-6645257 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG - chr1_1:6645239-6645258 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG - chr1_1:6645300-6645319 None:intergenic 25.0%
! ATTTGTGATTCATAAAACAC+TGG - chr1_1:6645429-6645448 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG + chr1_1:6645659-6645678 Msa0004180:intron 25.0%
! CTCACAAGTTATTGTTAATT+TGG + chr1_1:6645698-6645717 Msa0004180:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG + chr1_1:6645795-6645814 Msa0004180:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG + chr1_1:6646762-6646781 Msa0004180:intron 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG - chr1_1:6646805-6646824 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG + chr1_1:6646917-6646936 Msa0004180:three_prime_UTR 25.0%
!! GACCTATCTATGTAAAATTT+TGG + chr1_1:6647034-6647053 Msa0004180:three_prime_UTR 25.0%
!! CACCAAAATTTTACATAGAT+AGG - chr1_1:6647039-6647058 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG - chr1_1:6647087-6647106 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG + chr1_1:6647096-6647115 Msa0004180:three_prime_UTR 25.0%
! TAATTGTGTAGTAGTAGATA+AGG - chr1_1:6645191-6645210 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG - chr1_1:6645238-6645257 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG - chr1_1:6645239-6645258 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG - chr1_1:6645300-6645319 None:intergenic 25.0%
! ATTTGTGATTCATAAAACAC+TGG - chr1_1:6645429-6645448 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG + chr1_1:6645659-6645678 Msa0004180:intron 25.0%
! CTCACAAGTTATTGTTAATT+TGG + chr1_1:6645698-6645717 Msa0004180:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG + chr1_1:6645795-6645814 Msa0004180:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG + chr1_1:6646762-6646781 Msa0004180:intron 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG - chr1_1:6646805-6646824 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG + chr1_1:6646917-6646936 Msa0004180:three_prime_UTR 25.0%
!! GACCTATCTATGTAAAATTT+TGG + chr1_1:6647034-6647053 Msa0004180:three_prime_UTR 25.0%
!! CACCAAAATTTTACATAGAT+AGG - chr1_1:6647039-6647058 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG - chr1_1:6647087-6647106 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG + chr1_1:6647096-6647115 Msa0004180:three_prime_UTR 25.0%
AAAAACATAACCATGTCATG+TGG + chr1_1:6644973-6644992 Msa0004180:five_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG - chr1_1:6645081-6645100 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG - chr1_1:6645151-6645170 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG - chr1_1:6645181-6645200 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG + chr1_1:6645261-6645280 Msa0004180:CDS 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG + chr1_1:6645353-6645372 Msa0004180:intron 30.0%
TTGCTTATAGGTAGTGTTTA+TGG + chr1_1:6646048-6646067 Msa0004180:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG - chr1_1:6646480-6646499 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG - chr1_1:6646537-6646556 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG + chr1_1:6646536-6646555 Msa0004180:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG + chr1_1:6646537-6646556 Msa0004180:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG + chr1_1:6646970-6646989 Msa0004180:three_prime_UTR 30.0%
TACATAGATAGGTCATGAAA+GGG - chr1_1:6647028-6647047 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG - chr1_1:6647029-6647048 None:intergenic 30.0%
AAAAACATAACCATGTCATG+TGG + chr1_1:6644973-6644992 Msa0004180:five_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG - chr1_1:6645081-6645100 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG - chr1_1:6645151-6645170 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG - chr1_1:6645181-6645200 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG + chr1_1:6645261-6645280 Msa0004180:CDS 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG + chr1_1:6645353-6645372 Msa0004180:intron 30.0%
TTGCTTATAGGTAGTGTTTA+TGG + chr1_1:6646048-6646067 Msa0004180:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG - chr1_1:6646480-6646499 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG - chr1_1:6646537-6646556 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG + chr1_1:6646536-6646555 Msa0004180:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG + chr1_1:6646537-6646556 Msa0004180:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG + chr1_1:6646970-6646989 Msa0004180:three_prime_UTR 30.0%
TACATAGATAGGTCATGAAA+GGG - chr1_1:6647028-6647047 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG - chr1_1:6647029-6647048 None:intergenic 30.0%
ATCAATCATCATCCATTCAG+TGG - chr1_1:6645013-6645032 None:intergenic 35.0%
AAGAGGAGAAGAAAGAAAAG+TGG - chr1_1:6645164-6645183 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG - chr1_1:6645250-6645269 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG + chr1_1:6645669-6645688 Msa0004180:intron 35.0%
CTAAAAGCTAATTCAAACGC+TGG - chr1_1:6645790-6645809 None:intergenic 35.0%
! GGAAAGAGACTTTGGTAATA+TGG + chr1_1:6645956-6645975 Msa0004180:intron 35.0%
! GACTTTGGTAATATGGAGTT+CGG + chr1_1:6645963-6645982 Msa0004180:intron 35.0%
! ATGCTAGCTTGAACAATCAT+TGG - chr1_1:6646018-6646037 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG + chr1_1:6646208-6646227 Msa0004180:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG + chr1_1:6646209-6646228 Msa0004180:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG + chr1_1:6646464-6646483 Msa0004180:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG - chr1_1:6646565-6646584 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG - chr1_1:6646767-6646786 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG - chr1_1:6647143-6647162 None:intergenic 35.0%
ATCAATCATCATCCATTCAG+TGG - chr1_1:6645013-6645032 None:intergenic 35.0%
AAGAGGAGAAGAAAGAAAAG+TGG - chr1_1:6645164-6645183 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG - chr1_1:6645250-6645269 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG + chr1_1:6645669-6645688 Msa0004180:intron 35.0%
CTAAAAGCTAATTCAAACGC+TGG - chr1_1:6645790-6645809 None:intergenic 35.0%
! GGAAAGAGACTTTGGTAATA+TGG + chr1_1:6645956-6645975 Msa0004180:intron 35.0%
! GACTTTGGTAATATGGAGTT+CGG + chr1_1:6645963-6645982 Msa0004180:intron 35.0%
! ATGCTAGCTTGAACAATCAT+TGG - chr1_1:6646018-6646037 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG + chr1_1:6646208-6646227 Msa0004180:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG + chr1_1:6646209-6646228 Msa0004180:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG + chr1_1:6646464-6646483 Msa0004180:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG - chr1_1:6646565-6646584 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG - chr1_1:6646767-6646786 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG - chr1_1:6647143-6647162 None:intergenic 35.0%
GTGTTGAATGTGTTAGGCAA+TGG - chr1_1:6645075-6645094 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG - chr1_1:6645232-6645251 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG + chr1_1:6645372-6645391 Msa0004180:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG + chr1_1:6645386-6645405 Msa0004180:CDS 40.0%
CTGTTGTAGTGTAATGTGCA+AGG + chr1_1:6645764-6645783 Msa0004180:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG + chr1_1:6645871-6645890 Msa0004180:intron 40.0%
! TTGGTAATATGGAGTTCGGT+TGG + chr1_1:6645967-6645986 Msa0004180:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG + chr1_1:6645968-6645987 Msa0004180:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG - chr1_1:6646438-6646457 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG + chr1_1:6646543-6646562 Msa0004180:CDS 40.0%
GGTAATGTGACTGTTGAACT+TGG + chr1_1:6646564-6646583 Msa0004180:CDS 40.0%
AATGTGACTGTTGAACTTGG+TGG + chr1_1:6646567-6646586 Msa0004180:CDS 40.0%
TCTCGCTGCATAAATTGTGA+TGG + chr1_1:6646606-6646625 Msa0004180:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG + chr1_1:6646611-6646630 Msa0004180:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG + chr1_1:6646612-6646631 Msa0004180:CDS 40.0%
CTGACATGTACAACTTGTCA+AGG + chr1_1:6646639-6646658 Msa0004180:CDS 40.0%
TGTACAACTTGTCAAGGATC+TGG + chr1_1:6646645-6646664 Msa0004180:CDS 40.0%
ACTGAGAGAAGCTAAGATTG+AGG + chr1_1:6646863-6646882 Msa0004180:exon 40.0%
CTGAGAGAAGCTAAGATTGA+GGG + chr1_1:6646864-6646883 Msa0004180:exon 40.0%
TGAGAGAAGCTAAGATTGAG+GGG + chr1_1:6646865-6646884 Msa0004180:exon 40.0%
! AGGCATAGTTACTTTCTCCT+GGG - chr1_1:6647123-6647142 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG - chr1_1:6647124-6647143 None:intergenic 40.0%
GTGTTGAATGTGTTAGGCAA+TGG - chr1_1:6645075-6645094 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG - chr1_1:6645232-6645251 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG + chr1_1:6645372-6645391 Msa0004180:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG + chr1_1:6645386-6645405 Msa0004180:CDS 40.0%
CTGTTGTAGTGTAATGTGCA+AGG + chr1_1:6645764-6645783 Msa0004180:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG + chr1_1:6645871-6645890 Msa0004180:intron 40.0%
! TTGGTAATATGGAGTTCGGT+TGG + chr1_1:6645967-6645986 Msa0004180:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG + chr1_1:6645968-6645987 Msa0004180:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG - chr1_1:6646438-6646457 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG + chr1_1:6646543-6646562 Msa0004180:CDS 40.0%
GGTAATGTGACTGTTGAACT+TGG + chr1_1:6646564-6646583 Msa0004180:CDS 40.0%
AATGTGACTGTTGAACTTGG+TGG + chr1_1:6646567-6646586 Msa0004180:CDS 40.0%
TCTCGCTGCATAAATTGTGA+TGG + chr1_1:6646606-6646625 Msa0004180:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG + chr1_1:6646611-6646630 Msa0004180:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG + chr1_1:6646612-6646631 Msa0004180:CDS 40.0%
CTGACATGTACAACTTGTCA+AGG + chr1_1:6646639-6646658 Msa0004180:CDS 40.0%
TGTACAACTTGTCAAGGATC+TGG + chr1_1:6646645-6646664 Msa0004180:CDS 40.0%
ACTGAGAGAAGCTAAGATTG+AGG + chr1_1:6646863-6646882 Msa0004180:exon 40.0%
CTGAGAGAAGCTAAGATTGA+GGG + chr1_1:6646864-6646883 Msa0004180:exon 40.0%
TGAGAGAAGCTAAGATTGAG+GGG + chr1_1:6646865-6646884 Msa0004180:exon 40.0%
! AGGCATAGTTACTTTCTCCT+GGG - chr1_1:6647123-6647142 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG - chr1_1:6647124-6647143 None:intergenic 40.0%
TTGAGTGTGGCTGTTGGAAT+TGG + chr1_1:6645399-6645418 Msa0004180:CDS 45.0%
!! TGAATGGAGGAGCATTATGG+AGG + chr1_1:6645672-6645691 Msa0004180:intron 45.0%
TCTTAACCGTCATGTTCTCG+AGG + chr1_1:6645934-6645953 Msa0004180:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG + chr1_1:6645935-6645954 Msa0004180:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG - chr1_1:6645943-6645962 None:intergenic 45.0%
TTCTCGAGGGAAAGAGACTT+TGG + chr1_1:6645948-6645967 Msa0004180:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG + chr1_1:6646402-6646421 Msa0004180:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG + chr1_1:6646673-6646692 Msa0004180:CDS 45.0%
TACCTACGATCAAGGTAACG+AGG - chr1_1:6646678-6646697 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG + chr1_1:6646678-6646697 Msa0004180:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG + chr1_1:6646877-6646896 Msa0004180:three_prime_UTR 45.0%
AGGGAGTGGCCTAATATCAT+TGG - chr1_1:6647009-6647028 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG - chr1_1:6647023-6647042 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG - chr1_1:6647122-6647141 None:intergenic 45.0%
TTGAGTGTGGCTGTTGGAAT+TGG + chr1_1:6645399-6645418 Msa0004180:CDS 45.0%
!! TGAATGGAGGAGCATTATGG+AGG + chr1_1:6645672-6645691 Msa0004180:intron 45.0%
TCTTAACCGTCATGTTCTCG+AGG + chr1_1:6645934-6645953 Msa0004180:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG + chr1_1:6645935-6645954 Msa0004180:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG - chr1_1:6645943-6645962 None:intergenic 45.0%
TTCTCGAGGGAAAGAGACTT+TGG + chr1_1:6645948-6645967 Msa0004180:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG + chr1_1:6646402-6646421 Msa0004180:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG + chr1_1:6646673-6646692 Msa0004180:CDS 45.0%
TACCTACGATCAAGGTAACG+AGG - chr1_1:6646678-6646697 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG + chr1_1:6646678-6646697 Msa0004180:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG + chr1_1:6646877-6646896 Msa0004180:three_prime_UTR 45.0%
AGGGAGTGGCCTAATATCAT+TGG - chr1_1:6647009-6647028 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG - chr1_1:6647023-6647042 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG - chr1_1:6647122-6647141 None:intergenic 45.0%
!!! TTATTATTTTAACTTTTTAT+CGG + chr1_1:6646145-6646164 Msa0004180:intron 5.0%
!!! TTATTATTTTAACTTTTTAT+CGG + chr1_1:6646145-6646164 Msa0004180:intron 5.0%
GCTGTCACAACCACATGACA+TGG - chr1_1:6644986-6645005 None:intergenic 50.0%
GTGACAGCTTCACCACTGAA+TGG + chr1_1:6644998-6645017 Msa0004180:five_prime_UTR 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG + chr1_1:6645393-6645412 Msa0004180:CDS 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG - chr1_1:6645573-6645592 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG - chr1_1:6645593-6645612 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG - chr1_1:6645594-6645613 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG + chr1_1:6645593-6645612 Msa0004180:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG - chr1_1:6645601-6645620 None:intergenic 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG + chr1_1:6646216-6646235 Msa0004180:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG + chr1_1:6646219-6646238 Msa0004180:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG + chr1_1:6646416-6646435 Msa0004180:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG + chr1_1:6646431-6646450 Msa0004180:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG + chr1_1:6646578-6646597 Msa0004180:CDS 50.0%
GAACACCGTACCTACGATCA+AGG - chr1_1:6646686-6646705 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG + chr1_1:6647103-6647122 Msa0004180:three_prime_UTR 50.0%
GCTGTCACAACCACATGACA+TGG - chr1_1:6644986-6645005 None:intergenic 50.0%
GTGACAGCTTCACCACTGAA+TGG + chr1_1:6644998-6645017 Msa0004180:five_prime_UTR 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG + chr1_1:6645393-6645412 Msa0004180:CDS 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG - chr1_1:6645573-6645592 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG - chr1_1:6645593-6645612 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG - chr1_1:6645594-6645613 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG + chr1_1:6645593-6645612 Msa0004180:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG - chr1_1:6645601-6645620 None:intergenic 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG + chr1_1:6646216-6646235 Msa0004180:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG + chr1_1:6646219-6646238 Msa0004180:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG + chr1_1:6646416-6646435 Msa0004180:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG + chr1_1:6646431-6646450 Msa0004180:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG + chr1_1:6646578-6646597 Msa0004180:CDS 50.0%
GAACACCGTACCTACGATCA+AGG - chr1_1:6646686-6646705 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG + chr1_1:6647103-6647122 Msa0004180:three_prime_UTR 50.0%
CGAGCTCCAGAACCATTGCA+TGG - chr1_1:6645602-6645621 None:intergenic 55.0%
CGAGCTCCAGAACCATTGCA+TGG - chr1_1:6645602-6645621 None:intergenic 55.0%
CAGCCCTGCTTCCCATGCAA+TGG + chr1_1:6645587-6645606 Msa0004180:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG + chr1_1:6646581-6646600 Msa0004180:CDS 60.0%
CAGCCCTGCTTCCCATGCAA+TGG + chr1_1:6645587-6645606 Msa0004180:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG + chr1_1:6646581-6646600 Msa0004180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6644972 6647224 6644972 ID=Msa0004180;Name=Msa0004180
chr1_1 mRNA 6644972 6647224 6644972 ID=Msa0004180-mRNA-1;Parent=Msa0004180;Name=Msa0004180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=149|1|1|1|0.75|0.8|5|357|158
chr1_1 exon 6644972 6645282 6644972 ID=Msa0004180-mRNA-1:exon:2235;Parent=Msa0004180-mRNA-1
chr1_1 exon 6645375 6645458 6645375 ID=Msa0004180-mRNA-1:exon:2236;Parent=Msa0004180-mRNA-1
chr1_1 exon 6645569 6645620 6645569 ID=Msa0004180-mRNA-1:exon:2237;Parent=Msa0004180-mRNA-1
chr1_1 exon 6646538 6646694 6646538 ID=Msa0004180-mRNA-1:exon:2238;Parent=Msa0004180-mRNA-1
chr1_1 exon 6646846 6647224 6646846 ID=Msa0004180-mRNA-1:exon:2239;Parent=Msa0004180-mRNA-1
chr1_1 five_prime_UTR 6644972 6645120 6644972 ID=Msa0004180-mRNA-1:five_prime_utr;Parent=Msa0004180-mRNA-1
chr1_1 CDS 6645121 6645282 6645121 ID=Msa0004180-mRNA-1:cds;Parent=Msa0004180-mRNA-1
chr1_1 CDS 6645375 6645458 6645375 ID=Msa0004180-mRNA-1:cds;Parent=Msa0004180-mRNA-1
chr1_1 CDS 6645569 6645620 6645569 ID=Msa0004180-mRNA-1:cds;Parent=Msa0004180-mRNA-1
chr1_1 CDS 6646538 6646694 6646538 ID=Msa0004180-mRNA-1:cds;Parent=Msa0004180-mRNA-1
chr1_1 CDS 6646846 6646867 6646846 ID=Msa0004180-mRNA-1:cds;Parent=Msa0004180-mRNA-1
chr1_1 three_prime_UTR 6646868 6647224 6646868 ID=Msa0004180-mRNA-1:three_prime_utr;Parent=Msa0004180-mRNA-1
Gene Sequence

>Msa0004180

ATGACAATATCTTATTCACTTTCACTTCCTCAATTACATTCCACTTTTCTTTCTTCTCCTCTTAAATCCTTATCTACTACTACACAATTAGCTAGAAATAAATTTCAACCAAAACCCACATTTTATCCACGTATTAAAGCTCTTGAACTTGATCAAAACACGGTAGTTGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATACCAGTGTTTTATGAATCACAAATTGATAATGCTGCCAAAAGAGATAACACGCAGCCCTGCTTCCCATGCAATGGTTCTGGAGCTCAGAAATGCAGATTTTGTTTGGGAACCGGTAATGTGACTGTTGAACTTGGTGGAGCTGAGACGGAGGTCTCTCGCTGCATAAATTGTGATGGTGCGGGTTCACTGACATGTACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGACTGA

Protein sequence

>Msa0004180

MTISYSLSLPQLHSTFLSSPLKSLSTTTQLARNKFQPKPTFYPRIKALELDQNTVVAITVGVLSVAVGIGIPVFYESQIDNAAKRDNTQPCFPCNGSGAQKCRFCLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD*