AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002550 MtrunA17_Chr7g0275281 95.062 162 7 1 3 164 1 161 4.23e-102 290
Msa1002550 MtrunA17_Chr5g0412411 51.136 88 42 1 75 162 97 183 1.99e-28 103
Msa1002550 MtrunA17_Chr7g0276381 40.196 102 61 0 63 164 78 179 4.87e-22 87.4
Msa1002550 MtrunA17_Chr8g0345861 33.663 101 64 1 66 163 69 169 1.81e-16 72.4
Msa1002550 MtrunA17_Chr4g0004811 36.782 87 55 0 76 162 59 145 9.88e-16 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002550 AT4G01150.1 68.452 168 45 5 1 164 1 164 2.21e-72 215
Msa1002550 AT4G01150.2 60.484 124 41 5 1 120 1 120 1.95e-39 130
Msa1002550 AT4G38100.1 46.667 90 45 1 75 164 105 191 2.48e-24 94.0
Msa1002550 AT4G38100.2 46.667 90 45 1 75 164 65 151 5.30e-24 92.0
Msa1002550 AT2G46820.2 38.554 83 51 0 81 163 91 173 1.07e-16 73.6
Msa1002550 AT2G46820.1 38.554 83 51 0 81 163 91 173 1.07e-16 73.6
Msa1002550 AT1G52220.1 33.121 157 96 4 7 161 2 151 2.92e-16 72.0
Msa1002550 AT1G52220.2 33.121 157 95 4 7 161 2 150 1.10e-15 70.5

Find 62 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAGTTGTTGTTGTTTA+AGG 0.093861 6_4:-88281023 None:intergenic
TTACCGATACCTTCTGTTTA+AGG 0.134213 6_4:+88282140 Msa1002550:CDS
CTTAAACAACAACAACTTTC+AGG 0.165400 6_4:+88281024 Msa1002550:CDS
AATAAACAAGTGTTTAATTA+AGG 0.215404 6_4:-88282784 None:intergenic
GTTTCAGCTTCCAAAGATTA+TGG 0.232736 6_4:+88282083 Msa1002550:intron
TTATCCACTGTCATGTGTTT+TGG 0.287531 6_4:-88280750 None:intergenic
GGGGAAGTGGAGAGGCGAGG+AGG 0.318832 6_4:-88280997 None:intergenic
GGGAAGTGGAGAGGCGAGGA+GGG 0.329908 6_4:-88280996 None:intergenic
CCTACCAACTCCATAATCTT+TGG 0.339884 6_4:-88282093 None:intergenic
AAGTCCACAGTGCTTCTATA+TGG 0.385074 6_4:+88281921 Msa1002550:CDS
TGAGTTGTTTACTGATTTGA+AGG 0.387775 6_4:+88281555 Msa1002550:CDS
AGAGATAGATAGATAGATAA+TGG 0.406639 6_4:+88280879 Msa1002550:exon
TGGTTATCTTCAATCCTTGT+TGG 0.408776 6_4:+88281966 Msa1002550:CDS
GTTGCAGCAGCAGCAAGTGC+AGG 0.408982 6_4:+88280904 Msa1002550:CDS
GTGGAGCTTTAGTTGCTGTT+TGG 0.417611 6_4:+88281946 Msa1002550:CDS
AATACAGTTCTATTCAGTTC+CGG 0.418432 6_4:-88282501 None:intergenic
GTTTACTGATTTGAAGGAAA+AGG 0.439046 6_4:+88281561 Msa1002550:CDS
GAGAGGCGAGGAGGGAGAAA+AGG 0.450125 6_4:-88280988 None:intergenic
TACCAAGGGGACAGAGTTGA+TGG 0.465274 6_4:-88281991 None:intergenic
AGGTTGATATTTATAGAGAC+CGG 0.469248 6_4:-88282630 None:intergenic
CAATGAAATTGATTAATACA+AGG 0.470493 6_4:-88282650 None:intergenic
CAAATCAGTAAACAACTCAT+TGG 0.473251 6_4:-88281551 None:intergenic
GCACTGAAGAAGAAAATTGC+CGG 0.482146 6_4:+88282482 Msa1002550:CDS
AAGTTGTTGTTGTTTAAGGA+AGG 0.484853 6_4:-88281019 None:intergenic
GTTGTTGTTGTTTAAGGAAG+GGG 0.491337 6_4:-88281017 None:intergenic
GCTTCCAAAGATTATGGAGT+TGG 0.493722 6_4:+88282089 Msa1002550:intron
TGCCATCAACTCTGTCCCCT+TGG 0.495202 6_4:+88281989 Msa1002550:CDS
CTGATGCAGAGAAAACTTAC+GGG 0.496844 6_4:-88281485 None:intergenic
GGAATTCTATTCTATATCAA+AGG 0.506125 6_4:-88282607 None:intergenic
ATTATGGAGTTGGTAGGACT+AGG 0.507832 6_4:+88282099 Msa1002550:CDS
TCTGATGCAGAGAAAACTTA+CGG 0.508867 6_4:-88281486 None:intergenic
GAATTCTATTCTATATCAAA+GGG 0.511185 6_4:-88282606 None:intergenic
CTCTGTACAGTCTAGCAGAA+AGG 0.539958 6_4:+88282439 Msa1002550:intron
AGTTGTTGTTGTTTAAGGAA+GGG 0.546157 6_4:-88281018 None:intergenic
GGTTGATATTTATAGAGACC+GGG 0.550924 6_4:-88282629 None:intergenic
ACAGTGCTTCTATATGGTGG+TGG 0.552883 6_4:+88281927 Msa1002550:CDS
TAGCAGAAAGGAACTAGCTA+CGG 0.563569 6_4:+88282451 Msa1002550:CDS
CCAAAGATTATGGAGTTGGT+AGG 0.564360 6_4:+88282093 Msa1002550:CDS
GTGGATAACAAGCAAGGGTG+TGG 0.565840 6_4:+88280765 Msa1002550:five_prime_UTR
TTTGGCCTACCTTAAACAGA+AGG 0.581785 6_4:-88282149 None:intergenic
TTATGGAGTTGGTAGGACTA+GGG 0.584651 6_4:+88282100 Msa1002550:CDS
GTACAGTGTTAGTTCCTCCT+CGG 0.590474 6_4:+88280926 Msa1002550:CDS
GTATCGGTAAACAAACCATC+CGG 0.591701 6_4:-88282127 None:intergenic
TGATATAGAATAGAATTCCC+CGG 0.591832 6_4:+88282611 Msa1002550:three_prime_UTR
AAACAAACAAATGATGAGCA+AGG 0.597184 6_4:-88282546 None:intergenic
CTACCTTAAACAGAAGGTAT+CGG 0.603325 6_4:-88282143 None:intergenic
TTGTTGTTGTTTAAGGAAGG+GGG 0.608496 6_4:-88281016 None:intergenic
ATGACAGTGGATAACAAGCA+AGG 0.610141 6_4:+88280759 Msa1002550:five_prime_UTR
CAGAGTTGATGGCACCAACA+AGG 0.615176 6_4:-88281980 None:intergenic
TCCACAGTGCTTCTATATGG+TGG 0.616000 6_4:+88281924 Msa1002550:CDS
AGCAGAGCAGCGAGTAACGT+TGG 0.616254 6_4:-88280962 None:intergenic
AGAGCAGCGAGTAACGTTGG+TGG 0.622412 6_4:-88280959 None:intergenic
ATGAGCAAGGAAGATCAACT+TGG 0.629853 6_4:-88282533 None:intergenic
TAGGACTAGGGTACACCGGA+TGG 0.634002 6_4:+88282112 Msa1002550:CDS
GATAGATAGATAGATAATGG+CGG 0.643070 6_4:+88280882 Msa1002550:exon
TTGGTGGTTGTCAGTAGCCG+AGG 0.644018 6_4:-88280943 None:intergenic
TGACAGTGGATAACAAGCAA+GGG 0.648736 6_4:+88280760 Msa1002550:five_prime_UTR
GTGGTTGTCAGTAGCCGAGG+AGG 0.655188 6_4:-88280940 None:intergenic
TTGGTAGGACTAGGGTACAC+CGG 0.662768 6_4:+88282108 Msa1002550:CDS
GTTGATATTTATAGAGACCG+GGG 0.664014 6_4:-88282628 None:intergenic
TGTTCCAAAACACATGACAG+TGG 0.709511 6_4:+88280746 Msa1002550:five_prime_UTR
ACCACCATATAGAAGCACTG+TGG 0.769266 6_4:-88281925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGAATCAATTTATA+AGG - chr6_4:88281593-88281612 None:intergenic 10.0%
!! TTTACAAAATTAATTCAAAA+TGG - chr6_4:88281630-88281649 None:intergenic 10.0%
!! ATAAAATGAATCAATTTATA+AGG - chr6_4:88281593-88281612 None:intergenic 10.0%
!! TTTACAAAATTAATTCAAAA+TGG - chr6_4:88281630-88281649 None:intergenic 10.0%
!! AGAAAAGAAAAGAAAATTAA+AGG - chr6_4:88281059-88281078 None:intergenic 15.0%
!! AATAAACAAGTGTTTAATTA+AGG - chr6_4:88282787-88282806 None:intergenic 15.0%
!! AGAAAAGAAAAGAAAATTAA+AGG - chr6_4:88281059-88281078 None:intergenic 15.0%
!! AATAAACAAGTGTTTAATTA+AGG - chr6_4:88282787-88282806 None:intergenic 15.0%
!! AGAAAAGAAAATTAAAGGAA+TGG - chr6_4:88281054-88281073 None:intergenic 20.0%
!!! ATCATTCATTATAAGTTGAA+AGG - chr6_4:88281160-88281179 None:intergenic 20.0%
!!! TATGAAAACAAGTTTGTTAT+AGG - chr6_4:88281193-88281212 None:intergenic 20.0%
!! ATTTAGGGAAAAAATAGAAA+TGG - chr6_4:88281433-88281452 None:intergenic 20.0%
!!! ATTGTATGTGTTATTAGAAT+CGG - chr6_4:88281671-88281690 None:intergenic 20.0%
!!! GCTTTTTTAAATTCACTTAT+TGG + chr6_4:88282025-88282044 Msa1002550:intron 20.0%
!! AAAATAGAATTGTTTCAGAT+TGG - chr6_4:88282061-88282080 None:intergenic 20.0%
!! AGAAATTTACACATTTGTAT+TGG + chr6_4:88282204-88282223 Msa1002550:intron 20.0%
!! GAATTCTATTCTATATCAAA+GGG - chr6_4:88282609-88282628 None:intergenic 20.0%
!! CAATGAAATTGATTAATACA+AGG - chr6_4:88282653-88282672 None:intergenic 20.0%
!! TACAGAAGTAAAAATATGAA+TGG - chr6_4:88282727-88282746 None:intergenic 20.0%
!!! TAATTAAGGATATTCTTTTC+TGG - chr6_4:88282773-88282792 None:intergenic 20.0%
!! AGAAAAGAAAATTAAAGGAA+TGG - chr6_4:88281054-88281073 None:intergenic 20.0%
!!! ATCATTCATTATAAGTTGAA+AGG - chr6_4:88281160-88281179 None:intergenic 20.0%
!!! TATGAAAACAAGTTTGTTAT+AGG - chr6_4:88281193-88281212 None:intergenic 20.0%
!! ATTTAGGGAAAAAATAGAAA+TGG - chr6_4:88281433-88281452 None:intergenic 20.0%
!!! ATTGTATGTGTTATTAGAAT+CGG - chr6_4:88281671-88281690 None:intergenic 20.0%
!!! GCTTTTTTAAATTCACTTAT+TGG + chr6_4:88282025-88282044 Msa1002550:intron 20.0%
!! AAAATAGAATTGTTTCAGAT+TGG - chr6_4:88282061-88282080 None:intergenic 20.0%
!! AGAAATTTACACATTTGTAT+TGG + chr6_4:88282204-88282223 Msa1002550:intron 20.0%
!! GAATTCTATTCTATATCAAA+GGG - chr6_4:88282609-88282628 None:intergenic 20.0%
!! CAATGAAATTGATTAATACA+AGG - chr6_4:88282653-88282672 None:intergenic 20.0%
!! TACAGAAGTAAAAATATGAA+TGG - chr6_4:88282727-88282746 None:intergenic 20.0%
!!! TAATTAAGGATATTCTTTTC+TGG - chr6_4:88282773-88282792 None:intergenic 20.0%
! AGAGATAGATAGATAGATAA+TGG + chr6_4:88280879-88280898 Msa1002550:exon 25.0%
! TTCTTACCACAATTAATATG+AGG + chr6_4:88281075-88281094 Msa1002550:intron 25.0%
! AATCAACCTCATATTAATTG+TGG - chr6_4:88281084-88281103 None:intergenic 25.0%
! AGAGACAATAACATGATTTA+GGG - chr6_4:88281448-88281467 None:intergenic 25.0%
! AAGAGACAATAACATGATTT+AGG - chr6_4:88281449-88281468 None:intergenic 25.0%
! TCACTTACTTGAATTACTAT+TGG - chr6_4:88281722-88281741 None:intergenic 25.0%
! AATGTAATCACATACATCAT+TGG + chr6_4:88281750-88281769 Msa1002550:intron 25.0%
! ATGACGAATGTTTATGTATT+TGG - chr6_4:88282170-88282189 None:intergenic 25.0%
! TTGATTCTGATTGAAAAAAG+AGG - chr6_4:88282339-88282358 None:intergenic 25.0%
! AATATATTGTTTATGCCTTG+AGG - chr6_4:88282396-88282415 None:intergenic 25.0%
! GGAATTCTATTCTATATCAA+AGG - chr6_4:88282610-88282629 None:intergenic 25.0%
!!! GAATGTTTTGATACAAAAGA+AGG + chr6_4:88282817-88282836 Msa1002550:three_prime_UTR 25.0%
! AGAGATAGATAGATAGATAA+TGG + chr6_4:88280879-88280898 Msa1002550:exon 25.0%
! TTCTTACCACAATTAATATG+AGG + chr6_4:88281075-88281094 Msa1002550:intron 25.0%
! AATCAACCTCATATTAATTG+TGG - chr6_4:88281084-88281103 None:intergenic 25.0%
! AGAGACAATAACATGATTTA+GGG - chr6_4:88281448-88281467 None:intergenic 25.0%
! AAGAGACAATAACATGATTT+AGG - chr6_4:88281449-88281468 None:intergenic 25.0%
! TCACTTACTTGAATTACTAT+TGG - chr6_4:88281722-88281741 None:intergenic 25.0%
! AATGTAATCACATACATCAT+TGG + chr6_4:88281750-88281769 Msa1002550:intron 25.0%
! ATGACGAATGTTTATGTATT+TGG - chr6_4:88282170-88282189 None:intergenic 25.0%
! TTGATTCTGATTGAAAAAAG+AGG - chr6_4:88282339-88282358 None:intergenic 25.0%
! AATATATTGTTTATGCCTTG+AGG - chr6_4:88282396-88282415 None:intergenic 25.0%
! GGAATTCTATTCTATATCAA+AGG - chr6_4:88282610-88282629 None:intergenic 25.0%
!!! GAATGTTTTGATACAAAAGA+AGG + chr6_4:88282817-88282836 Msa1002550:three_prime_UTR 25.0%
!! CGAATGTTTTTGTTTCTTTG+AGG - chr6_4:88280803-88280822 None:intergenic 30.0%
GAGCAAAAAAGAAAGAAAGA+AGG + chr6_4:88280849-88280868 Msa1002550:five_prime_UTR 30.0%
! GATAGATAGATAGATAATGG+CGG + chr6_4:88280882-88280901 Msa1002550:exon 30.0%
!! AGTTGTTGTTGTTTAAGGAA+GGG - chr6_4:88281021-88281040 None:intergenic 30.0%
!! AAGTTGTTGTTGTTTAAGGA+AGG - chr6_4:88281022-88281041 None:intergenic 30.0%
!! CTGAAAGTTGTTGTTGTTTA+AGG - chr6_4:88281026-88281045 None:intergenic 30.0%
CTTAAACAACAACAACTTTC+AGG + chr6_4:88281024-88281043 Msa1002550:CDS 30.0%
CAAATCAGTAAACAACTCAT+TGG - chr6_4:88281554-88281573 None:intergenic 30.0%
!! TGAGTTGTTTACTGATTTGA+AGG + chr6_4:88281555-88281574 Msa1002550:CDS 30.0%
!! GTTTACTGATTTGAAGGAAA+AGG + chr6_4:88281561-88281580 Msa1002550:CDS 30.0%
GAATCGGAAATGAAACATTA+TGG - chr6_4:88281655-88281674 None:intergenic 30.0%
TGATGTATGTGATTACATTC+AGG - chr6_4:88281749-88281768 None:intergenic 30.0%
ACATTAATGTTGTCAAAGAG+AGG - chr6_4:88281829-88281848 None:intergenic 30.0%
!! TACAGTTTTAGTAACCAAGT+AGG + chr6_4:88281853-88281872 Msa1002550:intron 30.0%
TGGAGTATATTATTCCTACT+TGG - chr6_4:88281870-88281889 None:intergenic 30.0%
! TGTTTCAGATTGGTTCAAAA+TGG - chr6_4:88282051-88282070 None:intergenic 30.0%
CAGCAACAAGAAAAAAACAA+TGG - chr6_4:88282364-88282383 None:intergenic 30.0%
AATACAGTTCTATTCAGTTC+CGG - chr6_4:88282504-88282523 None:intergenic 30.0%
AAACAAACAAATGATGAGCA+AGG - chr6_4:88282549-88282568 None:intergenic 30.0%
TGATATAGAATAGAATTCCC+CGG + chr6_4:88282611-88282630 Msa1002550:three_prime_UTR 30.0%
!! AGGTTGATATTTATAGAGAC+CGG - chr6_4:88282633-88282652 None:intergenic 30.0%
!! CGAATGTTTTTGTTTCTTTG+AGG - chr6_4:88280803-88280822 None:intergenic 30.0%
GAGCAAAAAAGAAAGAAAGA+AGG + chr6_4:88280849-88280868 Msa1002550:five_prime_UTR 30.0%
! GATAGATAGATAGATAATGG+CGG + chr6_4:88280882-88280901 Msa1002550:exon 30.0%
!! AGTTGTTGTTGTTTAAGGAA+GGG - chr6_4:88281021-88281040 None:intergenic 30.0%
!! AAGTTGTTGTTGTTTAAGGA+AGG - chr6_4:88281022-88281041 None:intergenic 30.0%
!! CTGAAAGTTGTTGTTGTTTA+AGG - chr6_4:88281026-88281045 None:intergenic 30.0%
CTTAAACAACAACAACTTTC+AGG + chr6_4:88281024-88281043 Msa1002550:CDS 30.0%
CAAATCAGTAAACAACTCAT+TGG - chr6_4:88281554-88281573 None:intergenic 30.0%
!! TGAGTTGTTTACTGATTTGA+AGG + chr6_4:88281555-88281574 Msa1002550:CDS 30.0%
!! GTTTACTGATTTGAAGGAAA+AGG + chr6_4:88281561-88281580 Msa1002550:CDS 30.0%
GAATCGGAAATGAAACATTA+TGG - chr6_4:88281655-88281674 None:intergenic 30.0%
TGATGTATGTGATTACATTC+AGG - chr6_4:88281749-88281768 None:intergenic 30.0%
ACATTAATGTTGTCAAAGAG+AGG - chr6_4:88281829-88281848 None:intergenic 30.0%
!! TACAGTTTTAGTAACCAAGT+AGG + chr6_4:88281853-88281872 Msa1002550:intron 30.0%
TGGAGTATATTATTCCTACT+TGG - chr6_4:88281870-88281889 None:intergenic 30.0%
! TGTTTCAGATTGGTTCAAAA+TGG - chr6_4:88282051-88282070 None:intergenic 30.0%
CAGCAACAAGAAAAAAACAA+TGG - chr6_4:88282364-88282383 None:intergenic 30.0%
AATACAGTTCTATTCAGTTC+CGG - chr6_4:88282504-88282523 None:intergenic 30.0%
AAACAAACAAATGATGAGCA+AGG - chr6_4:88282549-88282568 None:intergenic 30.0%
TGATATAGAATAGAATTCCC+CGG + chr6_4:88282611-88282630 Msa1002550:three_prime_UTR 30.0%
!! AGGTTGATATTTATAGAGAC+CGG - chr6_4:88282633-88282652 None:intergenic 30.0%
! TTATCCACTGTCATGTGTTT+TGG - chr6_4:88280753-88280772 None:intergenic 35.0%
!! TTGTTGTTGTTTAAGGAAGG+GGG - chr6_4:88281019-88281038 None:intergenic 35.0%
!! GTTGTTGTTGTTTAAGGAAG+GGG - chr6_4:88281020-88281039 None:intergenic 35.0%
TAAGCTGTTTATCCAAACAG+AGG - chr6_4:88281132-88281151 None:intergenic 35.0%
TCTGATGCAGAGAAAACTTA+CGG - chr6_4:88281489-88281508 None:intergenic 35.0%
TACTCCATTGTCATTATCAG+TGG + chr6_4:88281883-88281902 Msa1002550:intron 35.0%
ACTCCATTGTCATTATCAGT+GGG + chr6_4:88281884-88281903 Msa1002550:intron 35.0%
TGGTTATCTTCAATCCTTGT+TGG + chr6_4:88281966-88281985 Msa1002550:CDS 35.0%
GTTTCAGCTTCCAAAGATTA+TGG + chr6_4:88282083-88282102 Msa1002550:intron 35.0%
TTACCGATACCTTCTGTTTA+AGG + chr6_4:88282140-88282159 Msa1002550:CDS 35.0%
! CTACCTTAAACAGAAGGTAT+CGG - chr6_4:88282146-88282165 None:intergenic 35.0%
! CACATTTGTATTGGTGTTTC+TGG + chr6_4:88282213-88282232 Msa1002550:intron 35.0%
GTTTGTGAACTTTCTTGCAT+TGG + chr6_4:88282304-88282323 Msa1002550:intron 35.0%
TGAACTTTCTTGCATTGGAT+TGG + chr6_4:88282309-88282328 Msa1002550:intron 35.0%
GTTGATATTTATAGAGACCG+GGG - chr6_4:88282631-88282650 None:intergenic 35.0%
! GGTTGATATTTATAGAGACC+GGG - chr6_4:88282632-88282651 None:intergenic 35.0%
! TTATCCACTGTCATGTGTTT+TGG - chr6_4:88280753-88280772 None:intergenic 35.0%
!! TTGTTGTTGTTTAAGGAAGG+GGG - chr6_4:88281019-88281038 None:intergenic 35.0%
!! GTTGTTGTTGTTTAAGGAAG+GGG - chr6_4:88281020-88281039 None:intergenic 35.0%
TAAGCTGTTTATCCAAACAG+AGG - chr6_4:88281132-88281151 None:intergenic 35.0%
TCTGATGCAGAGAAAACTTA+CGG - chr6_4:88281489-88281508 None:intergenic 35.0%
TACTCCATTGTCATTATCAG+TGG + chr6_4:88281883-88281902 Msa1002550:intron 35.0%
ACTCCATTGTCATTATCAGT+GGG + chr6_4:88281884-88281903 Msa1002550:intron 35.0%
TGGTTATCTTCAATCCTTGT+TGG + chr6_4:88281966-88281985 Msa1002550:CDS 35.0%
GTTTCAGCTTCCAAAGATTA+TGG + chr6_4:88282083-88282102 Msa1002550:intron 35.0%
TTACCGATACCTTCTGTTTA+AGG + chr6_4:88282140-88282159 Msa1002550:CDS 35.0%
! CTACCTTAAACAGAAGGTAT+CGG - chr6_4:88282146-88282165 None:intergenic 35.0%
! CACATTTGTATTGGTGTTTC+TGG + chr6_4:88282213-88282232 Msa1002550:intron 35.0%
GTTTGTGAACTTTCTTGCAT+TGG + chr6_4:88282304-88282323 Msa1002550:intron 35.0%
TGAACTTTCTTGCATTGGAT+TGG + chr6_4:88282309-88282328 Msa1002550:intron 35.0%
GTTGATATTTATAGAGACCG+GGG - chr6_4:88282631-88282650 None:intergenic 35.0%
! GGTTGATATTTATAGAGACC+GGG - chr6_4:88282632-88282651 None:intergenic 35.0%
TGTTCCAAAACACATGACAG+TGG + chr6_4:88280746-88280765 Msa1002550:five_prime_UTR 40.0%
ATGACAGTGGATAACAAGCA+AGG + chr6_4:88280759-88280778 Msa1002550:five_prime_UTR 40.0%
TGACAGTGGATAACAAGCAA+GGG + chr6_4:88280760-88280779 Msa1002550:five_prime_UTR 40.0%
AGATGTTTGTAGCCTCTGTT+TGG + chr6_4:88281117-88281136 Msa1002550:intron 40.0%
GATAAGCTCAAATTGACGCT+AGG + chr6_4:88281275-88281294 Msa1002550:intron 40.0%
CTGATGCAGAGAAAACTTAC+GGG - chr6_4:88281488-88281507 None:intergenic 40.0%
! CATCCCACTGATAATGACAA+TGG - chr6_4:88281890-88281909 None:intergenic 40.0%
AAGTCCACAGTGCTTCTATA+TGG + chr6_4:88281921-88281940 Msa1002550:CDS 40.0%
GCTTCCAAAGATTATGGAGT+TGG + chr6_4:88282089-88282108 Msa1002550:intron 40.0%
CCTACCAACTCCATAATCTT+TGG - chr6_4:88282096-88282115 None:intergenic 40.0%
! CCAAAGATTATGGAGTTGGT+AGG + chr6_4:88282093-88282112 Msa1002550:CDS 40.0%
!! ATTATGGAGTTGGTAGGACT+AGG + chr6_4:88282099-88282118 Msa1002550:CDS 40.0%
!! TTATGGAGTTGGTAGGACTA+GGG + chr6_4:88282100-88282119 Msa1002550:CDS 40.0%
! GTATCGGTAAACAAACCATC+CGG - chr6_4:88282130-88282149 None:intergenic 40.0%
! CGATACCTTCTGTTTAAGGT+AGG + chr6_4:88282144-88282163 Msa1002550:intron 40.0%
TTTGGCCTACCTTAAACAGA+AGG - chr6_4:88282152-88282171 None:intergenic 40.0%
TAGCAGAAAGGAACTAGCTA+CGG + chr6_4:88282451-88282470 Msa1002550:CDS 40.0%
GCACTGAAGAAGAAAATTGC+CGG + chr6_4:88282482-88282501 Msa1002550:CDS 40.0%
ATGAGCAAGGAAGATCAACT+TGG - chr6_4:88282536-88282555 None:intergenic 40.0%
TGTTCCAAAACACATGACAG+TGG + chr6_4:88280746-88280765 Msa1002550:five_prime_UTR 40.0%
ATGACAGTGGATAACAAGCA+AGG + chr6_4:88280759-88280778 Msa1002550:five_prime_UTR 40.0%
TGACAGTGGATAACAAGCAA+GGG + chr6_4:88280760-88280779 Msa1002550:five_prime_UTR 40.0%
AGATGTTTGTAGCCTCTGTT+TGG + chr6_4:88281117-88281136 Msa1002550:intron 40.0%
GATAAGCTCAAATTGACGCT+AGG + chr6_4:88281275-88281294 Msa1002550:intron 40.0%
CTGATGCAGAGAAAACTTAC+GGG - chr6_4:88281488-88281507 None:intergenic 40.0%
! CATCCCACTGATAATGACAA+TGG - chr6_4:88281890-88281909 None:intergenic 40.0%
AAGTCCACAGTGCTTCTATA+TGG + chr6_4:88281921-88281940 Msa1002550:CDS 40.0%
GCTTCCAAAGATTATGGAGT+TGG + chr6_4:88282089-88282108 Msa1002550:intron 40.0%
CCTACCAACTCCATAATCTT+TGG - chr6_4:88282096-88282115 None:intergenic 40.0%
! CCAAAGATTATGGAGTTGGT+AGG + chr6_4:88282093-88282112 Msa1002550:CDS 40.0%
!! ATTATGGAGTTGGTAGGACT+AGG + chr6_4:88282099-88282118 Msa1002550:CDS 40.0%
!! TTATGGAGTTGGTAGGACTA+GGG + chr6_4:88282100-88282119 Msa1002550:CDS 40.0%
! GTATCGGTAAACAAACCATC+CGG - chr6_4:88282130-88282149 None:intergenic 40.0%
! CGATACCTTCTGTTTAAGGT+AGG + chr6_4:88282144-88282163 Msa1002550:intron 40.0%
TTTGGCCTACCTTAAACAGA+AGG - chr6_4:88282152-88282171 None:intergenic 40.0%
TAGCAGAAAGGAACTAGCTA+CGG + chr6_4:88282451-88282470 Msa1002550:CDS 40.0%
GCACTGAAGAAGAAAATTGC+CGG + chr6_4:88282482-88282501 Msa1002550:CDS 40.0%
ATGAGCAAGGAAGATCAACT+TGG - chr6_4:88282536-88282555 None:intergenic 40.0%
GTACAGTGTTAGTTCCTCCT+CGG + chr6_4:88280926-88280945 Msa1002550:CDS 45.0%
TTGTTTAAGGAAGGGGGAAG+TGG - chr6_4:88281013-88281032 None:intergenic 45.0%
! CTACAAACATCTGTGGTGGA+AGG - chr6_4:88281109-88281128 None:intergenic 45.0%
ACAGAGGCTACAAACATCTG+TGG - chr6_4:88281116-88281135 None:intergenic 45.0%
TCCACAGTGCTTCTATATGG+TGG + chr6_4:88281924-88281943 Msa1002550:CDS 45.0%
!! ACCACCATATAGAAGCACTG+TGG - chr6_4:88281928-88281947 None:intergenic 45.0%
ACAGTGCTTCTATATGGTGG+TGG + chr6_4:88281927-88281946 Msa1002550:CDS 45.0%
! GTGGAGCTTTAGTTGCTGTT+TGG + chr6_4:88281946-88281965 Msa1002550:CDS 45.0%
AGCGAGTGATAGCTTACCAA+GGG - chr6_4:88282008-88282027 None:intergenic 45.0%
AAGCGAGTGATAGCTTACCA+AGG - chr6_4:88282009-88282028 None:intergenic 45.0%
TGTTTATGCCTTGAGGCATG+TGG - chr6_4:88282389-88282408 None:intergenic 45.0%
CTCTGTACAGTCTAGCAGAA+AGG + chr6_4:88282439-88282458 Msa1002550:intron 45.0%
GTACAGTGTTAGTTCCTCCT+CGG + chr6_4:88280926-88280945 Msa1002550:CDS 45.0%
TTGTTTAAGGAAGGGGGAAG+TGG - chr6_4:88281013-88281032 None:intergenic 45.0%
! CTACAAACATCTGTGGTGGA+AGG - chr6_4:88281109-88281128 None:intergenic 45.0%
ACAGAGGCTACAAACATCTG+TGG - chr6_4:88281116-88281135 None:intergenic 45.0%
TCCACAGTGCTTCTATATGG+TGG + chr6_4:88281924-88281943 Msa1002550:CDS 45.0%
!! ACCACCATATAGAAGCACTG+TGG - chr6_4:88281928-88281947 None:intergenic 45.0%
ACAGTGCTTCTATATGGTGG+TGG + chr6_4:88281927-88281946 Msa1002550:CDS 45.0%
! GTGGAGCTTTAGTTGCTGTT+TGG + chr6_4:88281946-88281965 Msa1002550:CDS 45.0%
AGCGAGTGATAGCTTACCAA+GGG - chr6_4:88282008-88282027 None:intergenic 45.0%
AAGCGAGTGATAGCTTACCA+AGG - chr6_4:88282009-88282028 None:intergenic 45.0%
TGTTTATGCCTTGAGGCATG+TGG - chr6_4:88282389-88282408 None:intergenic 45.0%
CTCTGTACAGTCTAGCAGAA+AGG + chr6_4:88282439-88282458 Msa1002550:intron 45.0%
GTGGATAACAAGCAAGGGTG+TGG + chr6_4:88280765-88280784 Msa1002550:five_prime_UTR 50.0%
GAGGCTACAAACATCTGTGG+TGG - chr6_4:88281113-88281132 None:intergenic 50.0%
CAGCACTGTCACTGTCACAT+TGG + chr6_4:88281694-88281713 Msa1002550:intron 50.0%
!! GCACTGACACTTTAGCTTGC+CGG - chr6_4:88281802-88281821 None:intergenic 50.0%
!! CAGAGTTGATGGCACCAACA+AGG - chr6_4:88281983-88282002 None:intergenic 50.0%
TACCAAGGGGACAGAGTTGA+TGG - chr6_4:88281994-88282013 None:intergenic 50.0%
GCGAGTGATAGCTTACCAAG+GGG - chr6_4:88282007-88282026 None:intergenic 50.0%
TTGGTAGGACTAGGGTACAC+CGG + chr6_4:88282108-88282127 Msa1002550:CDS 50.0%
TTGCTGATCCACATGCCTCA+AGG + chr6_4:88282378-88282397 Msa1002550:intron 50.0%
GTGGATAACAAGCAAGGGTG+TGG + chr6_4:88280765-88280784 Msa1002550:five_prime_UTR 50.0%
GAGGCTACAAACATCTGTGG+TGG - chr6_4:88281113-88281132 None:intergenic 50.0%
CAGCACTGTCACTGTCACAT+TGG + chr6_4:88281694-88281713 Msa1002550:intron 50.0%
!! GCACTGACACTTTAGCTTGC+CGG - chr6_4:88281802-88281821 None:intergenic 50.0%
!! CAGAGTTGATGGCACCAACA+AGG - chr6_4:88281983-88282002 None:intergenic 50.0%
TACCAAGGGGACAGAGTTGA+TGG - chr6_4:88281994-88282013 None:intergenic 50.0%
GCGAGTGATAGCTTACCAAG+GGG - chr6_4:88282007-88282026 None:intergenic 50.0%
TTGGTAGGACTAGGGTACAC+CGG + chr6_4:88282108-88282127 Msa1002550:CDS 50.0%
TTGCTGATCCACATGCCTCA+AGG + chr6_4:88282378-88282397 Msa1002550:intron 50.0%
! TTGGTGGTTGTCAGTAGCCG+AGG - chr6_4:88280946-88280965 None:intergenic 55.0%
AGAGCAGCGAGTAACGTTGG+TGG - chr6_4:88280962-88280981 None:intergenic 55.0%
AGCAGAGCAGCGAGTAACGT+TGG - chr6_4:88280965-88280984 None:intergenic 55.0%
TAAGGAAGGGGGAAGTGGAG+AGG - chr6_4:88281008-88281027 None:intergenic 55.0%
!! CATTGGTGTCGTGTCAGTGC+CGG + chr6_4:88281767-88281786 Msa1002550:intron 55.0%
!! CACTTTAGCTTGCCGGCATC+CGG - chr6_4:88281795-88281814 None:intergenic 55.0%
TGCCATCAACTCTGTCCCCT+TGG + chr6_4:88281989-88282008 Msa1002550:CDS 55.0%
TAGGACTAGGGTACACCGGA+TGG + chr6_4:88282112-88282131 Msa1002550:CDS 55.0%
! TTGGTGGTTGTCAGTAGCCG+AGG - chr6_4:88280946-88280965 None:intergenic 55.0%
AGAGCAGCGAGTAACGTTGG+TGG - chr6_4:88280962-88280981 None:intergenic 55.0%
AGCAGAGCAGCGAGTAACGT+TGG - chr6_4:88280965-88280984 None:intergenic 55.0%
TAAGGAAGGGGGAAGTGGAG+AGG - chr6_4:88281008-88281027 None:intergenic 55.0%
!! CATTGGTGTCGTGTCAGTGC+CGG + chr6_4:88281767-88281786 Msa1002550:intron 55.0%
!! CACTTTAGCTTGCCGGCATC+CGG - chr6_4:88281795-88281814 None:intergenic 55.0%
TGCCATCAACTCTGTCCCCT+TGG + chr6_4:88281989-88282008 Msa1002550:CDS 55.0%
TAGGACTAGGGTACACCGGA+TGG + chr6_4:88282112-88282131 Msa1002550:CDS 55.0%
GTTGCAGCAGCAGCAAGTGC+AGG + chr6_4:88280904-88280923 Msa1002550:CDS 60.0%
GTGGTTGTCAGTAGCCGAGG+AGG - chr6_4:88280943-88280962 None:intergenic 60.0%
GAGAGGCGAGGAGGGAGAAA+AGG - chr6_4:88280991-88281010 None:intergenic 60.0%
GTTGCAGCAGCAGCAAGTGC+AGG + chr6_4:88280904-88280923 Msa1002550:CDS 60.0%
GTGGTTGTCAGTAGCCGAGG+AGG - chr6_4:88280943-88280962 None:intergenic 60.0%
GAGAGGCGAGGAGGGAGAAA+AGG - chr6_4:88280991-88281010 None:intergenic 60.0%
GGGAAGTGGAGAGGCGAGGA+GGG - chr6_4:88280999-88281018 None:intergenic 65.0%
AAGGGGGAAGTGGAGAGGCG+AGG - chr6_4:88281003-88281022 None:intergenic 65.0%
!! TGTCGTGTCAGTGCCGGTGC+CGG + chr6_4:88281773-88281792 Msa1002550:intron 65.0%
GGGAAGTGGAGAGGCGAGGA+GGG - chr6_4:88280999-88281018 None:intergenic 65.0%
AAGGGGGAAGTGGAGAGGCG+AGG - chr6_4:88281003-88281022 None:intergenic 65.0%
!! TGTCGTGTCAGTGCCGGTGC+CGG + chr6_4:88281773-88281792 Msa1002550:intron 65.0%
GGGGAAGTGGAGAGGCGAGG+AGG - chr6_4:88281000-88281019 None:intergenic 70.0%
!! TCAGTGCCGGTGCCGGATGC+CGG + chr6_4:88281780-88281799 Msa1002550:intron 70.0%
AGCTTGCCGGCATCCGGCAC+CGG - chr6_4:88281789-88281808 None:intergenic 70.0%
GGGGAAGTGGAGAGGCGAGG+AGG - chr6_4:88281000-88281019 None:intergenic 70.0%
!! TCAGTGCCGGTGCCGGATGC+CGG + chr6_4:88281780-88281799 Msa1002550:intron 70.0%
AGCTTGCCGGCATCCGGCAC+CGG - chr6_4:88281789-88281808 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 88280743 88282844 88280743 ID=Msa1002550;Name=Msa1002550
chr6_4 mRNA 88280743 88282844 88280743 ID=Msa1002550-mRNA-1;Parent=Msa1002550;Name=Msa1002550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=155|1|1|1|1|1|5|330|164
chr6_4 exon 88280743 88281045 88280743 ID=Msa1002550-mRNA-1:exon:17172;Parent=Msa1002550-mRNA-1
chr6_4 exon 88281482 88281582 88281482 ID=Msa1002550-mRNA-1:exon:17173;Parent=Msa1002550-mRNA-1
chr6_4 exon 88281903 88282010 88281903 ID=Msa1002550-mRNA-1:exon:17174;Parent=Msa1002550-mRNA-1
chr6_4 exon 88282090 88282161 88282090 ID=Msa1002550-mRNA-1:exon:17175;Parent=Msa1002550-mRNA-1
chr6_4 exon 88282449 88282844 88282449 ID=Msa1002550-mRNA-1:exon:17176;Parent=Msa1002550-mRNA-1
chr6_4 five_prime_UTR 88280743 88280897 88280743 ID=Msa1002550-mRNA-1:five_prime_utr;Parent=Msa1002550-mRNA-1
chr6_4 CDS 88280898 88281045 88280898 ID=Msa1002550-mRNA-1:cds;Parent=Msa1002550-mRNA-1
chr6_4 CDS 88281482 88281582 88281482 ID=Msa1002550-mRNA-1:cds;Parent=Msa1002550-mRNA-1
chr6_4 CDS 88281903 88282010 88281903 ID=Msa1002550-mRNA-1:cds;Parent=Msa1002550-mRNA-1
chr6_4 CDS 88282090 88282161 88282090 ID=Msa1002550-mRNA-1:cds;Parent=Msa1002550-mRNA-1
chr6_4 CDS 88282449 88282514 88282449 ID=Msa1002550-mRNA-1:cds;Parent=Msa1002550-mRNA-1
chr6_4 three_prime_UTR 88282515 88282844 88282515 ID=Msa1002550-mRNA-1:three_prime_utr;Parent=Msa1002550-mRNA-1
Gene Sequence

>Msa1002550

ATGGCGGTTGCAGCAGCAGCAAGTGCAGGTACAGTGTTAGTTCCTCCTCGGCTACTGACAACCACCAACGTTACTCGCTGCTCTGCTTTGCCTTTTCTCCCTCCTCGCCTCTCCACTTCCCCCTTCCTTAAACAACAACAACTTTCAGAGTCCCGTAAGTTTTCTCTGCATCAGACTAGAGCTTCTTCTTCAGAAGAAACATCTACTTCTCTTGATACCAATGAGTTGTTTACTGATTTGAAGGAAAAGTGGGATGCTGTTGAAAACAAGTCCACAGTGCTTCTATATGGTGGTGGAGCTTTAGTTGCTGTTTGGTTATCTTCAATCCTTGTTGGTGCCATCAACTCTGTCCCCTTGCTTCCAAAGATTATGGAGTTGGTAGGACTAGGGTACACCGGATGGTTTGTTTACCGATACCTTCTGTTTAAGTCTAGCAGAAAGGAACTAGCTACGGATATTGATGCACTGAAGAAGAAAATTGCCGGAACTGAATAG

Protein sequence

>Msa1002550

MAVAAAASAGTVLVPPRLLTTTNVTRCSALPFLPPRLSTSPFLKQQQLSESRKFSLHQTRASSSEETSTSLDTNELFTDLKEKWDAVENKSTVLLYGGGALVAVWLSSILVGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIDALKKKIAGTE*