AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0016380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016380 MtrunA17_Chr1g0208221 98.031 254 5 0 1 254 1 254 0.0 512
Msa0016380 MtrunA17_Chr1g0208201 70.472 254 67 1 7 252 80 333 5.38e-124 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0016380 AT4G35220.1 79.574 235 46 1 20 252 37 271 1.37e-139 393
Msa0016380 AT4G34180.1 68.966 232 71 1 23 253 24 255 7.99e-117 335
Msa0016380 AT1G44542.1 68.722 227 70 1 28 253 45 271 6.74e-115 330

Find 82 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCAAACATTGCCTTAT+TGG 0.080684 1_1:+27186859 None:intergenic
CACCATTGCGGCAATTTATT+TGG 0.156294 1_1:+27186973 None:intergenic
TTGCCGCAATGGTGTCTTTA+TGG 0.169887 1_1:-27186964 Msa0016380:three_prime_UTR
CTGGGACATCATCAAGTTTC+AGG 0.182140 1_1:+27187393 None:intergenic
CAGTCCATTGCTTACCTCTT+AGG 0.209663 1_1:-27187358 Msa0016380:CDS
ATGCATTCTAATCAAGTATT+AGG 0.250536 1_1:-27187306 Msa0016380:exon
TGCTTACCTCTTAGGTTGGC+TGG 0.313330 1_1:-27187350 Msa0016380:CDS
GTCTCAAAAGCTGGCATGTC+TGG 0.322806 1_1:+27191785 None:intergenic
ATATTACACTTTAACTTTAG+TGG 0.330864 1_1:-27186926 Msa0016380:three_prime_UTR
TTCCATTGTCGTATACTTCC+CGG 0.343600 1_1:+27191837 None:intergenic
GGCAATTTATTTGGTTCAAC+AGG 0.354890 1_1:+27186982 None:intergenic
AATAAACAAACACTCCAATA+AGG 0.369224 1_1:-27186873 Msa0016380:three_prime_UTR
CCAAGAGATTCTAATATAAC+TGG 0.371707 1_1:-27191452 Msa0016380:intron
ACAAACAATGAGCGTATGTT+TGG 0.387643 1_1:-27186761 Msa0016380:three_prime_UTR
CTCGACTTGCACGTCCTCAA+TGG 0.395006 1_1:-27191599 Msa0016380:intron
ACCTGTCGGTATTCAATGTT+CGG 0.395211 1_1:+27190388 None:intergenic
GTTTGCATTGCAATTTCCTA+TGG 0.401184 1_1:-27186846 Msa0016380:three_prime_UTR
TTCGATCATTACTTCGATGC+TGG 0.405597 1_1:-27191638 Msa0016380:CDS
AACACTGATATTAAACTTGT+TGG 0.407040 1_1:-27189765 Msa0016380:intron
GAGTACACGCTTTACACCTC+TGG 0.430957 1_1:+27190413 None:intergenic
CCATTGCTTACCTCTTAGGT+TGG 0.432052 1_1:-27187354 Msa0016380:CDS
CCAGTTATATTAGAATCTCT+TGG 0.437156 1_1:+27191452 None:intergenic
TTGATTAGAATGCATCGTAT+TGG 0.437438 1_1:+27187314 None:intergenic
ATGAAGCTTCCAACTCATAC+TGG 0.440868 1_1:-27191689 Msa0016380:CDS
TGAGCGTATGTTTGGTTTGG+TGG 0.459520 1_1:-27186753 None:intergenic
AATCATAAGAAGCAACAGAT+AGG 0.460354 1_1:+27188633 None:intergenic
CTTAGGTTGGCTGGTGCTGA+GGG 0.467458 1_1:-27187341 Msa0016380:CDS
CAATGAGCGTATGTTTGGTT+TGG 0.471717 1_1:-27186756 Msa0016380:three_prime_UTR
CTTCCCGGCGAGGAGGGATA+AGG 0.477141 1_1:+27191852 None:intergenic
CAGTGCTGTCTCAGAATCCA+TGG 0.480149 1_1:-27187100 Msa0016380:three_prime_UTR
TCCGCCGTTCACCGCCGTTA+CGG 0.486874 1_1:+27191880 None:intergenic
TGGACTGAATATAATCCTGC+TGG 0.490321 1_1:+27187374 None:intergenic
GGTACTCATGTTGATGCTCC+TGG 0.490330 1_1:-27191668 Msa0016380:CDS
TCTTAGGTTGGCTGGTGCTG+AGG 0.495320 1_1:-27187342 Msa0016380:CDS
TAACCTTATCCCTCCTCGCC+GGG 0.501158 1_1:-27191855 Msa0016380:CDS
GGTAGTAGCGTTAGCCTTGG+TGG 0.508800 1_1:-27191912 Msa0016380:CDS
TCAGCACCAGCCAACCTAAG+AGG 0.516231 1_1:+27187344 None:intergenic
GGAACATCAACTAATAGAGC+AGG 0.518734 1_1:+27191473 None:intergenic
TCGCTTGCTTATATGAGTAC+TGG 0.519642 1_1:+27191988 None:intergenic
GTATGTATGTTTAGAGCAAG+AGG 0.527028 1_1:-27187056 Msa0016380:three_prime_UTR
CATTTCAGAGTTATTAGCGA+TGG 0.534072 1_1:+27191709 None:intergenic
ATAACCTTATCCCTCCTCGC+CGG 0.537188 1_1:-27191856 Msa0016380:CDS
CTCAGAATCCATGGGAGGAG+TGG 0.542287 1_1:-27187091 Msa0016380:three_prime_UTR
GAATTTGACTCGAGCTATGT+GGG 0.544572 1_1:-27189822 Msa0016380:CDS
CCATCTTTAGTCTCAAAAGC+TGG 0.545793 1_1:+27191776 None:intergenic
AACCAAATAAATTGCCGCAA+TGG 0.546249 1_1:-27186975 Msa0016380:three_prime_UTR
TAATGATCGAAGACATGTCC+AGG 0.547630 1_1:+27191650 None:intergenic
TGGAGTTTACAAAATTCCAT+AGG 0.554371 1_1:+27186830 None:intergenic
AAACTTGATGATGTCCCAGC+AGG 0.554591 1_1:-27187389 Msa0016380:CDS
TAGGCGGCTTATGTTTCAGA+AGG 0.554622 1_1:-27189844 Msa0016380:CDS
TTTGAGACTAAAGATGGTAT+CGG 0.559563 1_1:-27191770 Msa0016380:CDS
ATGATGATCCACTCCTCCCA+TGG 0.559584 1_1:+27187083 None:intergenic
CGTATACTTCCCGGCGAGGA+GGG 0.566543 1_1:+27191846 None:intergenic
TCGTATACTTCCCGGCGAGG+AGG 0.574729 1_1:+27191845 None:intergenic
GGAATTTGACTCGAGCTATG+TGG 0.575810 1_1:-27189823 Msa0016380:CDS
ATCTCCGTAACGGCGGTGAA+CGG 0.576262 1_1:-27191884 Msa0016380:CDS
TGTGAAATTCGAGGCACAGA+TGG 0.579249 1_1:+27186810 None:intergenic
AGTACACGCTTTACACCTCT+GGG 0.579818 1_1:+27190414 None:intergenic
GGACTGAATATAATCCTGCT+GGG 0.585452 1_1:+27187375 None:intergenic
TCCGAACATTGAATACCGAC+AGG 0.592325 1_1:-27190389 Msa0016380:intron
ACATGAGTACCAGTATGAGT+TGG 0.596387 1_1:+27191680 None:intergenic
TATGTGGGATTCACTGTGGA+TGG 0.615993 1_1:-27189807 Msa0016380:CDS
TCCGTAACGGCGGTGAACGG+CGG 0.616006 1_1:-27191881 Msa0016380:CDS
AGCGGTAGTAGCGTTAGCCT+TGG 0.620390 1_1:-27191915 Msa0016380:CDS
GAAGATGAAACAAACCATTG+AGG 0.623787 1_1:+27191585 None:intergenic
GAATCTTCGATATCACTCAC+AGG 0.624678 1_1:-27191814 Msa0016380:CDS
ATGGTATCGGTCAATTCTTG+TGG 0.629228 1_1:-27191757 Msa0016380:CDS
TCGAAATATGAAGTATCAAG+CGG 0.632220 1_1:-27191933 Msa0016380:exon
AGTGCTGTCTCAGAATCCAT+GGG 0.635648 1_1:-27187099 Msa0016380:three_prime_UTR
CGCCGGGAAGTATACGACAA+TGG 0.637447 1_1:-27191839 Msa0016380:CDS
CCAACCTAAGAGGTAAGCAA+TGG 0.639046 1_1:+27187354 None:intergenic
GGATGGCGCAAAGTGGCTAG+TGG 0.640794 1_1:-27189790 Msa0016380:CDS
GAACATCAACTAATAGAGCA+GGG 0.644133 1_1:+27191474 None:intergenic
GGTGGTTACAATCTCCGTAA+CGG 0.645027 1_1:-27191894 Msa0016380:CDS
TCACTGTGGATGGCGCAAAG+TGG 0.674320 1_1:-27189797 Msa0016380:CDS
TTGTCGTATACTTCCCGGCG+AGG 0.682285 1_1:+27191842 None:intergenic
GCTGTCTCAGAATCCATGGG+AGG 0.707249 1_1:-27187096 Msa0016380:three_prime_UTR
GAGCTATGTGGGATTCACTG+TGG 0.716645 1_1:-27189811 Msa0016380:CDS
GGTTACAATCTCCGTAACGG+CGG 0.716921 1_1:-27191891 Msa0016380:CDS
TACGGAGATTGTAACCACCA+AGG 0.724247 1_1:+27191898 None:intergenic
GCTCCATAAAGACACCATTG+CGG 0.736681 1_1:+27186961 None:intergenic
AAGTCATTAAATATTCCCAG+AGG 0.764509 1_1:-27190429 Msa0016380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTTAATTATGATTTA+TGG - chr1_1:27188753-27188772 Msa0016380:intron 10.0%
!! AACATTTAATTATGATTTAT+GGG - chr1_1:27188754-27188773 Msa0016380:intron 10.0%
!!! TTTGGTTTAATTTCATATTT+AGG - chr1_1:27187366-27187385 Msa0016380:CDS 15.0%
!! ACAACATTAATAATTAATGT+GGG - chr1_1:27187718-27187737 Msa0016380:intron 15.0%
!!! TACATTTTTGCTTATAATTT+AGG - chr1_1:27188026-27188045 Msa0016380:intron 15.0%
!! ATAACATATTTAATCAATTC+TGG + chr1_1:27188080-27188099 None:intergenic 15.0%
!!! AATCAATTGTTATTTTGATT+TGG - chr1_1:27188214-27188233 Msa0016380:intron 15.0%
!! TATTAGATGAAGATAATATT+TGG - chr1_1:27189175-27189194 Msa0016380:intron 15.0%
!! AATTGAAGATATTTATAACT+AGG + chr1_1:27189459-27189478 None:intergenic 15.0%
!! AATTGAAAGAGAAAAAAATT+GGG + chr1_1:27190036-27190055 None:intergenic 15.0%
!!! TTCAATTCTTAACATTTTTT+TGG - chr1_1:27190049-27190068 Msa0016380:intron 15.0%
!!! AAATTGATTTTGATGTATTT+AGG - chr1_1:27190696-27190715 Msa0016380:intron 15.0%
!! AAAATAAAAAAAAATGCAAC+AGG + chr1_1:27191511-27191530 None:intergenic 15.0%
!!! ATAGCTTCTGATAATTTTTT+TGG - chr1_1:27187348-27187367 Msa0016380:CDS 20.0%
!! CTTATAGAAATAAGTTATGT+TGG + chr1_1:27187451-27187470 None:intergenic 20.0%
!!! GTTTGACTTTATTTTATCTT+TGG - chr1_1:27187518-27187537 Msa0016380:intron 20.0%
!! AAGATGATCATTATAATTAG+GGG + chr1_1:27187695-27187714 None:intergenic 20.0%
!! GAAGATGATCATTATAATTA+GGG + chr1_1:27187696-27187715 None:intergenic 20.0%
!! AGAAGATGATCATTATAATT+AGG + chr1_1:27187697-27187716 None:intergenic 20.0%
!! CACAACATTAATAATTAATG+TGG - chr1_1:27187717-27187736 Msa0016380:intron 20.0%
!! CAACATTAATAATTAATGTG+GGG - chr1_1:27187719-27187738 Msa0016380:intron 20.0%
!! AACATTAATAATTAATGTGG+GGG - chr1_1:27187720-27187739 Msa0016380:intron 20.0%
!! AAAAATGTACATAAATGCAT+TGG + chr1_1:27188015-27188034 None:intergenic 20.0%
!!! AATTCTTTGAAAGTTTTCTA+TGG + chr1_1:27188132-27188151 None:intergenic 20.0%
!! TGAGAAAGTTTGATTAAAAT+AGG + chr1_1:27188157-27188176 None:intergenic 20.0%
!! TATAAAAGACACTGAAATTT+GGG + chr1_1:27188184-27188203 None:intergenic 20.0%
!! CATAAAATCTAATATCTTTG+TGG + chr1_1:27189634-27189653 None:intergenic 20.0%
!!! TAGGCATAATTTTATTTTCT+TGG - chr1_1:27189678-27189697 Msa0016380:intron 20.0%
!! ATAAATAATGAAATAGAGAG+AGG + chr1_1:27189763-27189782 None:intergenic 20.0%
!! TTCATTATTTATTTGCAACT+TGG - chr1_1:27189771-27189790 Msa0016380:CDS 20.0%
!! GAGTTATTCTAAATCTTATT+AGG - chr1_1:27189835-27189854 Msa0016380:CDS 20.0%
!!! TTCACCATTTCATTTTTTAT+TGG - chr1_1:27189869-27189888 Msa0016380:intron 20.0%
!! GAATCCAATAAAAAATGAAA+TGG + chr1_1:27189876-27189895 None:intergenic 20.0%
!! TATTGGATTCAAGATTATAA+TGG - chr1_1:27189886-27189905 Msa0016380:intron 20.0%
!! ATTGAAAGAGAAAAAAATTG+GGG + chr1_1:27190035-27190054 None:intergenic 20.0%
!! GAATTGAAAGAGAAAAAAAT+TGG + chr1_1:27190037-27190056 None:intergenic 20.0%
!!! TAAACATAGAAACTTTTCAT+TGG - chr1_1:27190318-27190337 Msa0016380:intron 20.0%
!! ACAAGTTAAGAAACTAAAAA+TGG + chr1_1:27190412-27190431 None:intergenic 20.0%
!!! TAATTTTAACTTTTCAGTGT+TGG - chr1_1:27190554-27190573 Msa0016380:intron 20.0%
!!! AAAGATATTTTCGAATTTGT+TGG - chr1_1:27191172-27191191 Msa0016380:intron 20.0%
!!! TTTAAATTTCTGGTCTTTAA+AGG - chr1_1:27191529-27191548 Msa0016380:intron 20.0%
!!! TTAAATTTCTGGTCTTTAAA+GGG - chr1_1:27191530-27191549 Msa0016380:intron 20.0%
!! TGAAAAGAATCAAATTCTTT+CGG + chr1_1:27191595-27191614 None:intergenic 20.0%
!!! ATATTACACTTTAACTTTAG+TGG - chr1_1:27191830-27191849 Msa0016380:CDS 20.0%
!! TTGTTTATGTGATATTTTGC+AGG - chr1_1:27187259-27187278 Msa0016380:intron 25.0%
!!! TATTTAGGACATGTTTTGAT+TGG - chr1_1:27187381-27187400 Msa0016380:CDS 25.0%
! ACATAAACAATTACTCATTC+TGG - chr1_1:27187558-27187577 Msa0016380:intron 25.0%
! ATCTACTTTCACACTTATTA+AGG - chr1_1:27187601-27187620 Msa0016380:intron 25.0%
! GTGTTTATCATATACTACTT+AGG + chr1_1:27188052-27188071 None:intergenic 25.0%
! TAAATATGTTATACTGTACG+AGG - chr1_1:27188088-27188107 Msa0016380:intron 25.0%
! GTATAAAAGACACTGAAATT+TGG + chr1_1:27188185-27188204 None:intergenic 25.0%
!!! TTTGATTTGGAAAAACTAGA+AGG - chr1_1:27188227-27188246 Msa0016380:intron 25.0%
! ATATCACAAGTTAACTGAAT+TGG - chr1_1:27188401-27188420 Msa0016380:intron 25.0%
! TGTATTCATATTCTTTGTAC+TGG - chr1_1:27188658-27188677 Msa0016380:intron 25.0%
! CAATGTAGCATATTAAAGTT+GGG - chr1_1:27188712-27188731 Msa0016380:intron 25.0%
! AATGTAGCATATTAAAGTTG+GGG - chr1_1:27188713-27188732 Msa0016380:intron 25.0%
! AACACTGATATTAAACTTGT+TGG - chr1_1:27188991-27189010 Msa0016380:intron 25.0%
!!! CACTTTATACATTGTTTTTC+TGG - chr1_1:27189111-27189130 Msa0016380:intron 25.0%
! TAAGTCAAAATTTAGGGAAA+CGG + chr1_1:27189539-27189558 None:intergenic 25.0%
!! TTCAATTGAATGAGTTGAAT+AGG - chr1_1:27189659-27189678 Msa0016380:intron 25.0%
!!! TTTATTTTCTTGGTGAACAT+AGG - chr1_1:27189688-27189707 Msa0016380:intron 25.0%
! TCTAAATCTTATTAGGTAAC+TGG - chr1_1:27189842-27189861 Msa0016380:CDS 25.0%
! TTATTTATGTGATGTCATGT+AGG - chr1_1:27190091-27190110 Msa0016380:intron 25.0%
!!! CCTTAGTTTTAAGTCAAAAA+GGG + chr1_1:27190258-27190277 None:intergenic 25.0%
!!! CCTTTTTGACTTAAAACTAA+GGG - chr1_1:27190256-27190275 Msa0016380:intron 25.0%
!!! TTGAGATGCAATTAGTTTTA+GGG + chr1_1:27190460-27190479 None:intergenic 25.0%
!!! ATTGAGATGCAATTAGTTTT+AGG + chr1_1:27190461-27190480 None:intergenic 25.0%
! TTGAGTGTAAAAATCACATT+TGG + chr1_1:27190787-27190806 None:intergenic 25.0%
! AATGTTAAGTGGTTTATGTT+CGG + chr1_1:27190844-27190863 None:intergenic 25.0%
! ATCATATCCAATTGTCAAAT+TGG - chr1_1:27190992-27191011 Msa0016380:intron 25.0%
! ATGCATTCTAATCAAGTATT+AGG - chr1_1:27191450-27191469 Msa0016380:intron 25.0%
! AATAAACAAACACTCCAATA+AGG - chr1_1:27191883-27191902 Msa0016380:CDS 25.0%
! TCGAAATATGAAGTATCAAG+CGG - chr1_1:27186823-27186842 Msa0016380:three_prime_UTR 30.0%
! TTTGAGACTAAAGATGGTAT+CGG - chr1_1:27186986-27187005 Msa0016380:three_prime_UTR 30.0%
CCAGTTATATTAGAATCTCT+TGG + chr1_1:27187307-27187326 None:intergenic 30.0%
CCAAGAGATTCTAATATAAC+TGG - chr1_1:27187304-27187323 Msa0016380:exon 30.0%
TTCACACTTATTAAGGATGA+CGG - chr1_1:27187608-27187627 Msa0016380:intron 30.0%
ACAAAACAGTTGGAAATTTG+GGG + chr1_1:27187946-27187965 None:intergenic 30.0%
CACAAAACAGTTGGAAATTT+GGG + chr1_1:27187947-27187966 None:intergenic 30.0%
TCACAAAACAGTTGGAAATT+TGG + chr1_1:27187948-27187967 None:intergenic 30.0%
AAGTCATTAAATATTCCCAG+AGG - chr1_1:27188327-27188346 Msa0016380:intron 30.0%
!! ACAAACACATAATTGGTCTT+TGG + chr1_1:27188574-27188593 None:intergenic 30.0%
AGTTGAGACAAACACATAAT+TGG + chr1_1:27188581-27188600 None:intergenic 30.0%
TACATTCAGATAACACATAC+AGG + chr1_1:27188632-27188651 None:intergenic 30.0%
GCAATGTAGCATATTAAAGT+TGG - chr1_1:27188711-27188730 Msa0016380:intron 30.0%
ACAAGCTTCAGTTTCTAATT+AGG + chr1_1:27188884-27188903 None:intergenic 30.0%
!! CTGATATTAAACTTGTTGGT+AGG - chr1_1:27188995-27189014 Msa0016380:intron 30.0%
AAATGTCGGAATAAATGTCA+CGG + chr1_1:27189056-27189075 None:intergenic 30.0%
TACAAATGCAAAACTAGACA+CGG + chr1_1:27189083-27189102 None:intergenic 30.0%
ATTCATAAGTGCAACTAATC+AGG + chr1_1:27189269-27189288 None:intergenic 30.0%
TTAGTTGCACTTATGAATAG+TGG - chr1_1:27189271-27189290 Msa0016380:intron 30.0%
! AGAGAACATCTAAAACACAA+CGG + chr1_1:27189362-27189381 None:intergenic 30.0%
! ATGTTCTCTCTGATTTTTGT+TGG - chr1_1:27189373-27189392 Msa0016380:intron 30.0%
!!! TTCCCTAAATTTTGACTTAG+CGG - chr1_1:27189540-27189559 Msa0016380:intron 30.0%
AGTAGTAGTATGGTCATAAA+AGG + chr1_1:27189959-27189978 None:intergenic 30.0%
AATCATAAGAAGCAACAGAT+AGG + chr1_1:27190126-27190145 None:intergenic 30.0%
TTTAAAAACACAAGGTGAGA+TGG + chr1_1:27190157-27190176 None:intergenic 30.0%
!! ACCTTGTGTTTTTAAAAGAC+AGG - chr1_1:27190161-27190180 Msa0016380:intron 30.0%
!! CCTTGTGTTTTTAAAAGACA+GGG - chr1_1:27190162-27190181 Msa0016380:intron 30.0%
!!! CCCTTTTTGACTTAAAACTA+AGG - chr1_1:27190255-27190274 Msa0016380:intron 30.0%
!!! CCCTTAGTTTTAAGTCAAAA+AGG + chr1_1:27190259-27190278 None:intergenic 30.0%
TAATTGCATCTCAATTCTCA+AGG - chr1_1:27190466-27190485 Msa0016380:intron 30.0%
AAGAAAAATCCCAGGTTTAT+TGG + chr1_1:27190518-27190537 None:intergenic 30.0%
GATTAACAAAGAAAAATCCC+AGG + chr1_1:27190526-27190545 None:intergenic 30.0%
!!! AGTGTTGGTATCATTTGTTT+TGG - chr1_1:27190569-27190588 Msa0016380:intron 30.0%
! TTTAAAGTTCCATACACAAC+TGG - chr1_1:27190596-27190615 Msa0016380:intron 30.0%
TTAAAGTTCCATACACAACT+GGG - chr1_1:27190597-27190616 Msa0016380:intron 30.0%
TTTGTAACCATGAACATCAT+AGG - chr1_1:27190646-27190665 Msa0016380:intron 30.0%
TTGTAACCATGAACATCATA+GGG - chr1_1:27190647-27190666 Msa0016380:intron 30.0%
! AAAGTGAGTTGAATGTTAAG+TGG + chr1_1:27190855-27190874 None:intergenic 30.0%
ACACTTACCAATTTGACAAT+TGG + chr1_1:27191002-27191021 None:intergenic 30.0%
CAAACAAAACATCAATGAAC+TGG + chr1_1:27191079-27191098 None:intergenic 30.0%
TTGTTCCTTTGGATAATTGA+AGG - chr1_1:27191236-27191255 Msa0016380:intron 30.0%
TTGATTAGAATGCATCGTAT+TGG + chr1_1:27191445-27191464 None:intergenic 30.0%
TGGAGTTTACAAAATTCCAT+AGG + chr1_1:27191929-27191948 None:intergenic 30.0%
! ACAGAATTTTGTGAAATTCG+AGG + chr1_1:27191958-27191977 None:intergenic 30.0%
! CTTCCAAAAAGCATGAAGAA+CGG - chr1_1:27187022-27187041 Msa0016380:three_prime_UTR 35.0%
CATTTCAGAGTTATTAGCGA+TGG + chr1_1:27187050-27187069 None:intergenic 35.0%
GAAGATGAAACAAACCATTG+AGG + chr1_1:27187174-27187193 None:intergenic 35.0%
GAACATCAACTAATAGAGCA+GGG + chr1_1:27187285-27187304 None:intergenic 35.0%
TAAATACTTGCGAGACTGTT+TGG - chr1_1:27187416-27187435 Msa0016380:CDS 35.0%
TGAAAATTCCGCCTTAATTG+TGG - chr1_1:27187758-27187777 Msa0016380:intron 35.0%
!! CTTCATTGCATTAGCTTTGA+GGG - chr1_1:27187818-27187837 Msa0016380:intron 35.0%
!! TTCATTGCATTAGCTTTGAG+GGG - chr1_1:27187819-27187838 Msa0016380:intron 35.0%
CTTGATAAGAGTTTGCAAAG+AGG - chr1_1:27187875-27187894 Msa0016380:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_1:27187922-27187941 None:intergenic 35.0%
GTTTAGTGTCACAAAACAGT+TGG + chr1_1:27187956-27187975 None:intergenic 35.0%
ATATGTTATACTGTACGAGG+AGG - chr1_1:27188091-27188110 Msa0016380:intron 35.0%
ATTTGGAAAAACTAGAAGGC+TGG - chr1_1:27188231-27188250 Msa0016380:intron 35.0%
AATGACTTCATAACTTCAGC+TGG + chr1_1:27188315-27188334 None:intergenic 35.0%
ATATTGTGCACATTACCTGT+CGG + chr1_1:27188385-27188404 None:intergenic 35.0%
AACTGAATTGGCACTGTTAT+AGG - chr1_1:27188413-27188432 Msa0016380:intron 35.0%
ACTGAATTGGCACTGTTATA+GGG - chr1_1:27188414-27188433 Msa0016380:intron 35.0%
TTATAGGGAGAATCACAACT+AGG - chr1_1:27188429-27188448 Msa0016380:intron 35.0%
TATAGGGAGAATCACAACTA+GGG - chr1_1:27188430-27188449 Msa0016380:intron 35.0%
ATCAGCAGAGTAGTTTGAAT+TGG + chr1_1:27188484-27188503 None:intergenic 35.0%
!! ATTGGTCTTTGGTAAATTCC+TGG + chr1_1:27188563-27188582 None:intergenic 35.0%
! ATTCTTTGTACTGGTGTCAA+TGG - chr1_1:27188667-27188686 Msa0016380:intron 35.0%
GCTACTTATCGTGAACAATA+TGG + chr1_1:27188693-27188712 None:intergenic 35.0%
ATCAAGGTCTATTTGAACAG+TGG + chr1_1:27188789-27188808 None:intergenic 35.0%
!! AGCATATAAGTGGACTATCA+AGG + chr1_1:27188805-27188824 None:intergenic 35.0%
GATCTTATCGAGCATATAAG+TGG + chr1_1:27188815-27188834 None:intergenic 35.0%
!! CTGAAGCTTGTTGAACTATT+AGG - chr1_1:27188893-27188912 Msa0016380:intron 35.0%
!! AAGCTTGTTGAACTATTAGG+CGG - chr1_1:27188896-27188915 Msa0016380:intron 35.0%
AATGTCGGAATAAATGTCAC+GGG + chr1_1:27189055-27189074 None:intergenic 35.0%
TTACAAGAGATTCCCTATAG+CGG + chr1_1:27189326-27189345 None:intergenic 35.0%
TAAAACACAACGGCATATTC+GGG + chr1_1:27189352-27189371 None:intergenic 35.0%
CTAAAACACAACGGCATATT+CGG + chr1_1:27189353-27189372 None:intergenic 35.0%
! CTGATTTTTGTTGGACTCTT+TGG - chr1_1:27189382-27189401 Msa0016380:intron 35.0%
ATACCACAGTACACATGAAA+AGG + chr1_1:27189505-27189524 None:intergenic 35.0%
AGCCGCTAAGTCAAAATTTA+GGG + chr1_1:27189545-27189564 None:intergenic 35.0%
AATATCTTTGTGGTCAGTAG+TGG + chr1_1:27189624-27189643 None:intergenic 35.0%
GTCATAAAAGGAGAAGATCA+AGG + chr1_1:27189947-27189966 None:intergenic 35.0%
AGTACATCACAGTAGTAGTA+TGG + chr1_1:27189969-27189988 None:intergenic 35.0%
!! CCCTGTCTTTTAAAAACACA+AGG + chr1_1:27190165-27190184 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG - chr1_1:27190279-27190298 Msa0016380:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG - chr1_1:27190280-27190299 Msa0016380:intron 35.0%
TTTCTAAACTTGTGCCCTAA+GGG + chr1_1:27190297-27190316 None:intergenic 35.0%
!! TTTCTTAACTTGTGCCCTTA+GGG - chr1_1:27190419-27190438 Msa0016380:CDS 35.0%
TCTCAATTCTCAAGGTCTTT+AGG - chr1_1:27190474-27190493 Msa0016380:intron 35.0%
CTCAATTCTCAAGGTCTTTA+GGG - chr1_1:27190475-27190494 Msa0016380:intron 35.0%
ATGTTACTCTCCAATAAACC+TGG - chr1_1:27190505-27190524 Msa0016380:intron 35.0%
TGTTACTCTCCAATAAACCT+GGG - chr1_1:27190506-27190525 Msa0016380:intron 35.0%
CTGAGTTAGAATCAACTCTT+AGG + chr1_1:27190746-27190765 None:intergenic 35.0%
! CTAAGAGTTGATTCTAACTC+AGG - chr1_1:27190744-27190763 Msa0016380:intron 35.0%
! AGTGATGTCTTTTGTTCCTT+TGG - chr1_1:27191225-27191244 Msa0016380:intron 35.0%
TTCGACCTTCAATTATCCAA+AGG + chr1_1:27191244-27191263 None:intergenic 35.0%
!! AGTTCATGTCATGTTGATTC+TGG + chr1_1:27191303-27191322 None:intergenic 35.0%
CTAACTACTCCAAATACTTC+AGG - chr1_1:27191321-27191340 Msa0016380:intron 35.0%
! GAATGCTTTCCTGAAGTATT+TGG + chr1_1:27191333-27191352 None:intergenic 35.0%
! TTAGGTTATGTGCGATTTTG+AGG - chr1_1:27191468-27191487 Msa0016380:CDS 35.0%
! ACAGAATTTGAAATTGCTGC+AGG - chr1_1:27191630-27191649 Msa0016380:CDS 35.0%
! GTATGTATGTTTAGAGCAAG+AGG - chr1_1:27191700-27191719 Msa0016380:CDS 35.0%
! GGCAATTTATTTGGTTCAAC+AGG + chr1_1:27191777-27191796 None:intergenic 35.0%
AACCAAATAAATTGCCGCAA+TGG - chr1_1:27191781-27191800 Msa0016380:CDS 35.0%
CAATGCAAACATTGCCTTAT+TGG + chr1_1:27191900-27191919 None:intergenic 35.0%
GTTTGCATTGCAATTTCCTA+TGG - chr1_1:27191910-27191929 Msa0016380:CDS 35.0%
ACAAACAATGAGCGTATGTT+TGG - chr1_1:27191995-27192014 Msa0016380:five_prime_UTR 35.0%
TCGCTTGCTTATATGAGTAC+TGG + chr1_1:27186771-27186790 None:intergenic 40.0%
TTCCATTGTCGTATACTTCC+CGG + chr1_1:27186922-27186941 None:intergenic 40.0%
GAATCTTCGATATCACTCAC+AGG - chr1_1:27186942-27186961 Msa0016380:three_prime_UTR 40.0%
CCATCTTTAGTCTCAAAAGC+TGG + chr1_1:27186983-27187002 None:intergenic 40.0%
!!! CCAGCTTTTGAGACTAAAGA+TGG - chr1_1:27186980-27186999 Msa0016380:three_prime_UTR 40.0%
!! ATGGTATCGGTCAATTCTTG+TGG - chr1_1:27186999-27187018 Msa0016380:three_prime_UTR 40.0%
! GAACCGTTCTTCATGCTTTT+TGG + chr1_1:27187028-27187047 None:intergenic 40.0%
ATGAAGCTTCCAACTCATAC+TGG - chr1_1:27187067-27187086 Msa0016380:three_prime_UTR 40.0%
ACATGAGTACCAGTATGAGT+TGG + chr1_1:27187079-27187098 None:intergenic 40.0%
TAATGATCGAAGACATGTCC+AGG + chr1_1:27187109-27187128 None:intergenic 40.0%
TTCGATCATTACTTCGATGC+TGG - chr1_1:27187118-27187137 Msa0016380:intron 40.0%
GGAACATCAACTAATAGAGC+AGG + chr1_1:27187286-27187305 None:intergenic 40.0%
!! AATTAATGTGGGGGTGTTTC+TGG - chr1_1:27187729-27187748 Msa0016380:intron 40.0%
CCTCAAAGCTAATGCAATGA+AGG + chr1_1:27187820-27187839 None:intergenic 40.0%
!! CCTTCATTGCATTAGCTTTG+AGG - chr1_1:27187817-27187836 Msa0016380:intron 40.0%
!! TCATTGCATTAGCTTTGAGG+GGG - chr1_1:27187820-27187839 Msa0016380:intron 40.0%
! GAGTCTTATCTAACCGATGT+GGG + chr1_1:27187856-27187875 None:intergenic 40.0%
! AGAGTCTTATCTAACCGATG+TGG + chr1_1:27187857-27187876 None:intergenic 40.0%
GATAAGAGTTTGCAAAGAGG+AGG - chr1_1:27187878-27187897 Msa0016380:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_1:27187920-27187939 Msa0016380:intron 40.0%
ACCTGTCGGTATTCAATGTT+CGG + chr1_1:27188371-27188390 None:intergenic 40.0%
ATGTCACTACTTGCACTTCA+TGG + chr1_1:27188540-27188559 None:intergenic 40.0%
GTAGCATATTAAAGTTGGGG+TGG - chr1_1:27188716-27188735 Msa0016380:intron 40.0%
! GAATTTGACTCGAGCTATGT+GGG - chr1_1:27188934-27188953 Msa0016380:intron 40.0%
! CTACATGTATGAAGCACCTA+TGG + chr1_1:27189146-27189165 None:intergenic 40.0%
GTAATCAATAGCAGTCGTAG+CGG - chr1_1:27189202-27189221 Msa0016380:intron 40.0%
! TAGCCTTTTCATGTGTACTG+TGG - chr1_1:27189499-27189518 Msa0016380:intron 40.0%
CAGCCGCTAAGTCAAAATTT+AGG + chr1_1:27189546-27189565 None:intergenic 40.0%
!! TTTGTGGTCAGTAGTGGATA+GGG + chr1_1:27189618-27189637 None:intergenic 40.0%
GTTTCTAAACTTGTGCCCTA+AGG + chr1_1:27190298-27190317 None:intergenic 40.0%
!! GTTTCTTAACTTGTGCCCTT+AGG - chr1_1:27190418-27190437 Msa0016380:CDS 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr1_1:27190436-27190455 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr1_1:27190437-27190456 None:intergenic 40.0%
AGCTATCCCTATGATGTTCA+TGG + chr1_1:27190656-27190675 None:intergenic 40.0%
AACGTGTGTGTTTGGTTATG+CGG + chr1_1:27190926-27190945 None:intergenic 40.0%
GTATCTACAACGTGTGTGTT+TGG + chr1_1:27190934-27190953 None:intergenic 40.0%
ATCTCAGTGCTTGGTTGATT+TGG - chr1_1:27191110-27191129 Msa0016380:intron 40.0%
GGACTGAATATAATCCTGCT+GGG + chr1_1:27191384-27191403 None:intergenic 40.0%
TGGACTGAATATAATCCTGC+TGG + chr1_1:27191385-27191404 None:intergenic 40.0%
AGAACTTAAAGCAGGAACTG+TGG + chr1_1:27191571-27191590 None:intergenic 40.0%
CACCATTGCGGCAATTTATT+TGG + chr1_1:27191786-27191805 None:intergenic 40.0%
CAATGAGCGTATGTTTGGTT+TGG - chr1_1:27192000-27192019 Msa0016380:five_prime_UTR 40.0%
TACGGAGATTGTAACCACCA+AGG + chr1_1:27186861-27186880 None:intergenic 45.0%
GGTGGTTACAATCTCCGTAA+CGG - chr1_1:27186862-27186881 Msa0016380:three_prime_UTR 45.0%
ACTAGGGCACACCACAATTA+AGG + chr1_1:27187772-27187791 None:intergenic 45.0%
CAAACCAGAGGCTGCAATTT+AGG + chr1_1:27187797-27187816 None:intergenic 45.0%
ATGCAATGAAGGCAAACCAG+AGG + chr1_1:27187809-27187828 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_1:27187913-27187932 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_1:27187910-27187929 Msa0016380:intron 45.0%
AGTACACGCTTTACACCTCT+GGG + chr1_1:27188345-27188364 None:intergenic 45.0%
TCCGAACATTGAATACCGAC+AGG - chr1_1:27188367-27188386 Msa0016380:intron 45.0%
AAGTGCAAGTAGTGACATCC+AGG - chr1_1:27188542-27188561 Msa0016380:intron 45.0%
TAGGCGGCTTATGTTTCAGA+AGG - chr1_1:27188912-27188931 Msa0016380:intron 45.0%
! GGAATTTGACTCGAGCTATG+TGG - chr1_1:27188933-27188952 Msa0016380:intron 45.0%
TATGTGGGATTCACTGTGGA+TGG - chr1_1:27188949-27188968 Msa0016380:intron 45.0%
CTAGACACGGTCACAAATGT+CGG + chr1_1:27189070-27189089 None:intergenic 45.0%
! GTATGAAGCACCTATGGAGT+CGG + chr1_1:27189140-27189159 None:intergenic 45.0%
CTTATGAATAGTGGCTGCAG+CGG - chr1_1:27189280-27189299 Msa0016380:intron 45.0%
!! CTTTGTGGTCAGTAGTGGAT+AGG + chr1_1:27189619-27189638 None:intergenic 45.0%
GCACATCAAATCTCAGTGCT+TGG - chr1_1:27191101-27191120 Msa0016380:intron 45.0%
CTGGGACATCATCAAGTTTC+AGG + chr1_1:27191366-27191385 None:intergenic 45.0%
!! AAACTTGATGATGTCCCAGC+AGG - chr1_1:27191367-27191386 Msa0016380:intron 45.0%
CAGTCCATTGCTTACCTCTT+AGG - chr1_1:27191398-27191417 Msa0016380:intron 45.0%
CCAACCTAAGAGGTAAGCAA+TGG + chr1_1:27191405-27191424 None:intergenic 45.0%
CCATTGCTTACCTCTTAGGT+TGG - chr1_1:27191402-27191421 Msa0016380:intron 45.0%
CTTTCGGCAGAACTTAAAGC+AGG + chr1_1:27191579-27191598 None:intergenic 45.0%
AGTGCTGTCTCAGAATCCAT+GGG - chr1_1:27191657-27191676 Msa0016380:CDS 45.0%
TTGCCGCAATGGTGTCTTTA+TGG - chr1_1:27191792-27191811 Msa0016380:CDS 45.0%
GCTCCATAAAGACACCATTG+CGG + chr1_1:27191798-27191817 None:intergenic 45.0%
TGTGAAATTCGAGGCACAGA+TGG + chr1_1:27191949-27191968 None:intergenic 45.0%
!!! TTTTTTTATTTTTAAATTTC+TGG - chr1_1:27191519-27191538 Msa0016380:intron 5.0%
GGTTACAATCTCCGTAACGG+CGG - chr1_1:27186865-27186884 Msa0016380:three_prime_UTR 50.0%
ATAACCTTATCCCTCCTCGC+CGG - chr1_1:27186900-27186919 Msa0016380:three_prime_UTR 50.0%
GTCTCAAAAGCTGGCATGTC+TGG + chr1_1:27186974-27186993 None:intergenic 50.0%
GGTACTCATGTTGATGCTCC+TGG - chr1_1:27187088-27187107 Msa0016380:three_prime_UTR 50.0%
AGGGCACACCACAATTAAGG+CGG + chr1_1:27187769-27187788 None:intergenic 50.0%
GGCTGCAATTTAGGCGACTA+GGG + chr1_1:27187788-27187807 None:intergenic 50.0%
AGGCTGCAATTTAGGCGACT+AGG + chr1_1:27187789-27187808 None:intergenic 50.0%
!! TTGCATTAGCTTTGAGGGGG+TGG - chr1_1:27187823-27187842 Msa0016380:intron 50.0%
! GGGTGGATTTAGTCCCACAT+CGG - chr1_1:27187840-27187859 Msa0016380:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_1:27187908-27187927 None:intergenic 50.0%
GAGTACACGCTTTACACCTC+TGG + chr1_1:27188346-27188365 None:intergenic 50.0%
GAGCTATGTGGGATTCACTG+TGG - chr1_1:27188945-27188964 Msa0016380:intron 50.0%
!! TTTCTGGACACCGACTCCAT+AGG - chr1_1:27189127-27189146 Msa0016380:intron 50.0%
! GCGCTTATGTGCCACTATAG+CGG + chr1_1:27189236-27189255 None:intergenic 50.0%
!! TGGCTGCAGCGGACTAATAA+CGG - chr1_1:27189291-27189310 Msa0016380:intron 50.0%
GAGAAGATCAAGGTGCAGAG+TGG + chr1_1:27189937-27189956 None:intergenic 50.0%
CCAAAGCTCCCAGTTGTGTA+TGG + chr1_1:27190608-27190627 None:intergenic 50.0%
CCATACACAACTGGGAGCTT+TGG - chr1_1:27190605-27190624 Msa0016380:intron 50.0%
!! TGCTTACCTCTTAGGTTGGC+TGG - chr1_1:27191406-27191425 Msa0016380:intron 50.0%
CAGTGCTGTCTCAGAATCCA+TGG - chr1_1:27191656-27191675 Msa0016380:CDS 50.0%
ATGATGATCCACTCCTCCCA+TGG + chr1_1:27191676-27191695 None:intergenic 50.0%
! AGCGGTAGTAGCGTTAGCCT+TGG - chr1_1:27186841-27186860 Msa0016380:three_prime_UTR 55.0%
!! GGTAGTAGCGTTAGCCTTGG+TGG - chr1_1:27186844-27186863 Msa0016380:three_prime_UTR 55.0%
ATCTCCGTAACGGCGGTGAA+CGG - chr1_1:27186872-27186891 Msa0016380:three_prime_UTR 55.0%
TAACCTTATCCCTCCTCGCC+GGG - chr1_1:27186901-27186920 Msa0016380:three_prime_UTR 55.0%
TTGTCGTATACTTCCCGGCG+AGG + chr1_1:27186917-27186936 None:intergenic 55.0%
! CGCCGGGAAGTATACGACAA+TGG - chr1_1:27186917-27186936 Msa0016380:three_prime_UTR 55.0%
! CTCGACTTGCACGTCCTCAA+TGG - chr1_1:27187157-27187176 Msa0016380:intron 55.0%
GTCGCCTAAATTGCAGCCTC+TGG - chr1_1:27187790-27187809 Msa0016380:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_1:27187900-27187919 Msa0016380:intron 55.0%
TCACTGTGGATGGCGCAAAG+TGG - chr1_1:27188959-27188978 Msa0016380:intron 55.0%
!! TAGCAGTCGTAGCGGACTAG+CGG - chr1_1:27189210-27189229 Msa0016380:intron 55.0%
ACGGCTGTAGTTGCCGCTAT+AGG - chr1_1:27189310-27189329 Msa0016380:intron 55.0%
CGGCTGTAGTTGCCGCTATA+GGG - chr1_1:27189311-27189330 Msa0016380:intron 55.0%
! CCAAAGCGCTATAGCGTAGC+AGG + chr1_1:27189577-27189596 None:intergenic 55.0%
CCTGCTACGCTATAGCGCTT+TGG - chr1_1:27189574-27189593 Msa0016380:intron 55.0%
GCTACGCTATAGCGCTTTGG+CGG - chr1_1:27189577-27189596 Msa0016380:intron 55.0%
! TAGTGGATAGGGCTGTGTGG+CGG + chr1_1:27189607-27189626 None:intergenic 55.0%
!! CAGTAGTGGATAGGGCTGTG+TGG + chr1_1:27189610-27189629 None:intergenic 55.0%
TCAGCACCAGCCAACCTAAG+AGG + chr1_1:27191415-27191434 None:intergenic 55.0%
!! TCTTAGGTTGGCTGGTGCTG+AGG - chr1_1:27191414-27191433 Msa0016380:intron 55.0%
!! CTTAGGTTGGCTGGTGCTGA+GGG - chr1_1:27191415-27191434 Msa0016380:intron 55.0%
GCTGTCTCAGAATCCATGGG+AGG - chr1_1:27191660-27191679 Msa0016380:CDS 55.0%
CTCAGAATCCATGGGAGGAG+TGG - chr1_1:27191665-27191684 Msa0016380:CDS 55.0%
CGTATACTTCCCGGCGAGGA+GGG + chr1_1:27186913-27186932 None:intergenic 60.0%
TCGTATACTTCCCGGCGAGG+AGG + chr1_1:27186914-27186933 None:intergenic 60.0%
GGATGGCGCAAAGTGGCTAG+TGG - chr1_1:27188966-27188985 Msa0016380:intron 60.0%
CGCTATAGCGCTTTGGCGGT+CGG - chr1_1:27189581-27189600 Msa0016380:intron 60.0%
TCCGTAACGGCGGTGAACGG+CGG - chr1_1:27186875-27186894 Msa0016380:three_prime_UTR 65.0%
TCCGCCGTTCACCGCCGTTA+CGG + chr1_1:27186879-27186898 None:intergenic 65.0%
CTTCCCGGCGAGGAGGGATA+AGG + chr1_1:27186907-27186926 None:intergenic 65.0%
!! CGGACTAGCGGCCGCTATAG+TGG - chr1_1:27189222-27189241 Msa0016380:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 27186754 27192024 27186754 ID=Msa0016380;Name=Msa0016380
chr1_1 mRNA 27186754 27192024 27186754 ID=Msa0016380-mRNA-1;Parent=Msa0016380;Name=Msa0016380-mRNA-1;_AED=0.28;_eAED=0.28;_QI=76|1|1|1|0.83|0.85|7|391|254
chr1_1 exon 27186754 27187126 27186754 ID=Msa0016380-mRNA-1:exon:9217;Parent=Msa0016380-mRNA-1
chr1_1 exon 27187289 27187435 27187289 ID=Msa0016380-mRNA-1:exon:9216;Parent=Msa0016380-mRNA-1
chr1_1 exon 27188595 27188665 27188595 ID=Msa0016380-mRNA-1:exon:9215;Parent=Msa0016380-mRNA-1
chr1_1 exon 27189766 27189863 27189766 ID=Msa0016380-mRNA-1:exon:9214;Parent=Msa0016380-mRNA-1
chr1_1 exon 27190390 27190462 27190390 ID=Msa0016380-mRNA-1:exon:9213;Parent=Msa0016380-mRNA-1
chr1_1 exon 27191453 27191497 27191453 ID=Msa0016380-mRNA-1:exon:9212;Parent=Msa0016380-mRNA-1
chr1_1 exon 27191600 27192024 27191600 ID=Msa0016380-mRNA-1:exon:9211;Parent=Msa0016380-mRNA-1
chr1_1 five_prime_UTR 27191949 27192024 27191949 ID=Msa0016380-mRNA-1:five_prime_utr;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27191600 27191948 27191600 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27191453 27191497 27191453 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27190390 27190462 27190390 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27189766 27189863 27189766 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27188595 27188665 27188595 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 CDS 27187307 27187435 27187307 ID=Msa0016380-mRNA-1:cds;Parent=Msa0016380-mRNA-1
chr1_1 three_prime_UTR 27187289 27187306 27187289 ID=Msa0016380-mRNA-1:three_prime_utr;Parent=Msa0016380-mRNA-1
chr1_1 three_prime_UTR 27186754 27187126 27186754 ID=Msa0016380-mRNA-1:three_prime_utr;Parent=Msa0016380-mRNA-1
Gene Sequence

>Msa0016380

ATGAAGTATCAAGCGGTAGTAGCGTTAGCCTTGGTGGTTACAATCTCCGTAACGGCGGTGAACGGCGGAGATAACCTTATCCCTCCTCGCCGGGAAGTATACGACAATGGAAGAATCTTCGATATCACTCACAGGTATCAACCAGACATGCCAGCTTTTGAGACTAAAGATGGTATCGGTCAATTCTTGTGGCTTCCAAAAAGCATGAAGAACGGTTCCATCGCTAATAACTCTGAAATGAAGCTTCCAACTCATACTGGTACTCATGTTGATGCTCCTGGACATGTCTTCGATCATTACTTCGATGCTGGATTCGATGTCGATTCTCTCGACTTGCACGTCCTCAATGGCCCTGCTCTATTAGTTGATGTTCCAAGAGATTCTAATATAACTGCTGAAGTTATGAAGTCATTAAATATTCCCAGAGGTGTAAAGCGTGTACTCTTCCGAACATTGAATACCGACAGGCGGCTTATGTTTCAGAAGGAATTTGACTCGAGCTATGTGGGATTCACTGTGGATGGCGCAAAGTGGCTAGTGGAGAACACTGATATTAAACTTGTTGGTATTGATTACCTATCTGTTGCTTCTTATGATTACTTGATTCCATCTCACCTTGTGTTTTTAAAAGACAGGGAAAGCATTCTCGTCGAAAGCCTGAAACTTGATGATGTCCCAGCAGGATTATATTCAGTCCATTGCTTACCTCTTAGGTTGGCTGGTGCTGAGGGATCACCAATACGATGCATTCTAATCAAGTATTAG

Protein sequence

>Msa0016380

MKYQAVVALALVVTISVTAVNGGDNLIPPRREVYDNGRIFDITHRYQPDMPAFETKDGIGQFLWLPKSMKNGSIANNSEMKLPTHTGTHVDAPGHVFDHYFDAGFDVDSLDLHVLNGPALLVDVPRDSNITAEVMKSLNIPRGVKRVLFRTLNTDRRLMFQKEFDSSYVGFTVDGAKWLVENTDIKLVGIDYLSVASYDYLIPSHLVFLKDRESILVESLKLDDVPAGLYSVHCLPLRLAGAEGSPIRCILIKY*