AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474660 MtrunA17_Chr3g0131571 96.226 159 5 1 52 209 1 159 1.43e-110 313
Msa0474660 MtrunA17_Chr5g0395851 50.000 60 24 2 106 161 181 238 7.76e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474660 AT5G51010.1 59.748 159 56 4 52 208 1 153 1.04e-59 184
Msa0474660 AT5G17170.1 41.584 101 33 5 106 201 180 259 2.38e-12 64.7

Find 68 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCAATTGCTTCATCTCTT+TGG 0.237136 3_3:+77564730 None:intergenic
AACATTCTTGTGCAAGCTAT+TGG 0.258906 3_3:+77564407 None:intergenic
AAAGAACATGAATGCATTAA+AGG 0.272507 3_3:+77564489 None:intergenic
GTTGATTAGGATGAAGTAAA+AGG 0.290725 3_3:+77565643 None:intergenic
TGAGTCTGTAAGGGTGTAAT+TGG 0.306471 3_3:+77565890 None:intergenic
TAAGCAACTTGTAGTTGATT+AGG 0.313376 3_3:+77565630 None:intergenic
CCAGGGCAGAAGTATTTATC+AGG 0.317364 3_3:+77565416 None:intergenic
AATCAACTACAAGTTGCTTA+TGG 0.342983 3_3:-77565627 Msa0474660:CDS
AAAGATGTCTTGAGAGTAGA+TGG 0.349045 3_3:+77565684 None:intergenic
TTGTGTGTTGTGGAAAATTC+TGG 0.355126 3_3:+77565863 None:intergenic
TAGGATGAAGTAAAAGGTTA+AGG 0.356489 3_3:+77565649 None:intergenic
ACGACAGATATAAGCTTGTT+TGG 0.361476 3_3:+77565575 None:intergenic
ATTGAACAGATGGAACTAAA+AGG 0.366566 3_3:+77564432 None:intergenic
GTGGGAGTTGTAGTTCTTGC+AGG 0.375454 3_3:-77564584 Msa0474660:CDS
CTCCAAAGAGATGAAGCAAT+TGG 0.389726 3_3:-77564732 Msa0474660:CDS
ACTCCCACGGCAACTGCAAT+AGG 0.395621 3_3:+77564599 None:intergenic
TGAACAAAAGGCTTAAAGTA+TGG 0.404906 3_3:-77564303 Msa0474660:three_prime_UTR
ATCTTCGAAGATTCTTCCTC+TGG 0.407873 3_3:+77565803 None:intergenic
ATAGGGCTTAAACCTTCGTT+TGG 0.408207 3_3:+77564815 None:intergenic
AGCTACACGCATGGTAAACC+TGG 0.428236 3_3:+77565599 None:intergenic
TTTGTTGACATCTGTTGCAT+AGG 0.431914 3_3:+77564797 None:intergenic
GTTCAGTCATAGGTGGCAAC+TGG 0.435640 3_3:+77564321 None:intergenic
TTGTTGACATCTGTTGCATA+GGG 0.437509 3_3:+77564798 None:intergenic
CTTCCTCTGGCTATGAATTG+AGG 0.442929 3_3:+77565816 None:intergenic
AGATCAAAGAGAAATCAAAA+TGG 0.446891 3_3:-77565784 Msa0474660:CDS
TTGGAGAGAGGTCGGAGGGT+AGG 0.447942 3_3:+77565708 None:intergenic
TGTCTTGAGAGTAGATGGAT+TGG 0.449903 3_3:+77565689 None:intergenic
TTCTGGTGATTGAGTCTGTA+AGG 0.464579 3_3:+77565880 None:intergenic
TAGATGGATTGGAGAGAGGT+CGG 0.467506 3_3:+77565700 None:intergenic
AGGATGAAGTAAAAGGTTAA+GGG 0.468286 3_3:+77565650 None:intergenic
TAGGGCTTAAACCTTCGTTT+GGG 0.473259 3_3:+77564816 None:intergenic
GCCACCTATGACTGAACAAA+AGG 0.477124 3_3:-77564315 Msa0474660:three_prime_UTR
TTATCAGGCAATTTATCAAA+GGG 0.481492 3_3:+77565431 None:intergenic
GTGATAATCTTGTAGTGTGA+AGG 0.484953 3_3:+77565742 None:intergenic
TCCAAAGAGATGAAGCAATT+GGG 0.489224 3_3:-77564731 Msa0474660:intron
TGATAATCTTGTAGTGTGAA+GGG 0.498122 3_3:+77565743 None:intergenic
CTTATATCTGTCGTGACTGC+GGG 0.498593 3_3:-77565566 Msa0474660:intron
TTTATCAGGCAATTTATCAA+AGG 0.502560 3_3:+77565430 None:intergenic
TGGATTGGAGAGAGGTCGGA+GGG 0.504235 3_3:+77565704 None:intergenic
GCTATTGGAAATTGAACAGA+TGG 0.508445 3_3:+77564422 None:intergenic
CAAAATGGCCTTGCAAGTGC+AGG 0.518248 3_3:-77565769 Msa0474660:CDS
AAATGAAACAGATGTTAGAA+AGG 0.526185 3_3:-77564769 Msa0474660:CDS
CTATGAATTGAGGAAATGAA+TGG 0.528980 3_3:+77565826 None:intergenic
ACTTCCTATTGCAGTTGCCG+TGG 0.541016 3_3:-77564603 Msa0474660:CDS
CCTGATAAATACTTCTGCCC+TGG 0.541318 3_3:-77565416 Msa0474660:intron
CTTCCTATTGCAGTTGCCGT+GGG 0.547663 3_3:-77564602 Msa0474660:CDS
ATGGATTGGAGAGAGGTCGG+AGG 0.556394 3_3:+77565703 None:intergenic
GAGAGGTCGGAGGGTAGGAG+TGG 0.557603 3_3:+77565713 None:intergenic
ATCAGGCAATTTATCAAAGG+GGG 0.560795 3_3:+77565433 None:intergenic
AAGGGAGGCCTGCACTTGCA+AGG 0.564120 3_3:+77565761 None:intergenic
GCAGGTATATTTACAATGAG+AGG 0.564968 3_3:-77565457 Msa0474660:intron
GCTTATATCTGTCGTGACTG+CGG 0.577229 3_3:-77565567 Msa0474660:CDS
CGGAGGGTAGGAGTGGCAGT+AGG 0.583426 3_3:+77565720 None:intergenic
AAGAGAATAGTTGTGTGTTG+TGG 0.585949 3_3:+77565853 None:intergenic
AAGTTGCTTATGGACCTCCC+AGG 0.608931 3_3:-77565617 Msa0474660:CDS
TTTCCTCAATTCATAGCCAG+AGG 0.625750 3_3:-77565819 Msa0474660:CDS
AGAGTAGATGGATTGGAGAG+AGG 0.627060 3_3:+77565696 None:intergenic
TTGTTTGGAAGCTACACGCA+TGG 0.631363 3_3:+77565590 None:intergenic
TTTGTGGTGCTCCCAAACGA+AGG 0.633347 3_3:-77564827 Msa0474660:CDS
TGCAAGAACTACAACTCCCA+CGG 0.635141 3_3:+77564586 None:intergenic
TGAATCCTACGTGGAAAGCG+TGG 0.643104 3_3:+77565915 None:intergenic
GGATGCCACGCTTTCCACGT+AGG 0.659184 3_3:-77565920 Msa0474660:CDS
TATCAGGCAATTTATCAAAG+GGG 0.660862 3_3:+77565432 None:intergenic
GCTACACGCATGGTAAACCT+GGG 0.677062 3_3:+77565600 None:intergenic
TCTGGTGATTGAGTCTGTAA+GGG 0.677551 3_3:+77565881 None:intergenic
TAATCTTGTAGTGTGAAGGG+AGG 0.698956 3_3:+77565746 None:intergenic
ACACGCATGGTAAACCTGGG+AGG 0.732150 3_3:+77565603 None:intergenic
TAATTGGTTTGAATCCTACG+TGG 0.744336 3_3:+77565906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTTATAAAAAAAAAAAAG+TGG - chr3_3:77564298-77564317 Msa0474660:three_prime_UTR 10.0%
!!! CACTTTTTTTTTTTTATAAA+TGG + chr3_3:77564300-77564319 None:intergenic 10.0%
!! CATTTATAAAAAAAAAAAAG+TGG - chr3_3:77564298-77564317 Msa0474660:three_prime_UTR 10.0%
!! GAAATATATATCTCATTATT+TGG - chr3_3:77564764-77564783 Msa0474660:CDS 15.0%
!! GAATTTGATAAATATTCATA+TGG + chr3_3:77564970-77564989 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG - chr3_3:77564974-77564993 Msa0474660:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG - chr3_3:77565330-77565349 Msa0474660:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG + chr3_3:77565610-77565629 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG + chr3_3:77565611-77565630 None:intergenic 15.0%
!! GAAATATATATCTCATTATT+TGG - chr3_3:77564764-77564783 Msa0474660:CDS 15.0%
!! GAATTTGATAAATATTCATA+TGG + chr3_3:77564970-77564989 None:intergenic 15.0%
!! AATATTTATCAAATTCTTGT+TGG - chr3_3:77564974-77564993 Msa0474660:intron 15.0%
!! TAATATTATACTGATAAGAA+AGG - chr3_3:77565330-77565349 Msa0474660:intron 15.0%
!! ATGTCAAAAACAAAAATAAT+GGG + chr3_3:77565610-77565629 None:intergenic 15.0%
!! TATGTCAAAAACAAAAATAA+TGG + chr3_3:77565611-77565630 None:intergenic 15.0%
!! AAAAAGTAATGAAATTACCA+GGG + chr3_3:77564867-77564886 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG + chr3_3:77564868-77564887 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG - chr3_3:77565038-77565057 Msa0474660:intron 20.0%
!! GCATATCTATTATCTATATA+TGG - chr3_3:77565105-77565124 Msa0474660:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG - chr3_3:77565298-77565317 Msa0474660:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG - chr3_3:77565368-77565387 Msa0474660:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG - chr3_3:77565785-77565804 Msa0474660:CDS 20.0%
!! AAAAAGTAATGAAATTACCA+GGG + chr3_3:77564867-77564886 None:intergenic 20.0%
!! TAAAAAGTAATGAAATTACC+AGG + chr3_3:77564868-77564887 None:intergenic 20.0%
!!! TAACAATTTCTATTGACTTA+AGG - chr3_3:77565038-77565057 Msa0474660:intron 20.0%
!! GCATATCTATTATCTATATA+TGG - chr3_3:77565105-77565124 Msa0474660:intron 20.0%
!!! TTTTTCAACCAAGTTTATTA+AGG - chr3_3:77565298-77565317 Msa0474660:intron 20.0%
!! TTTAAGAAGCAAAAGAAATA+CGG - chr3_3:77565368-77565387 Msa0474660:intron 20.0%
!!! TTCATGTTCTTTTGTTTATT+TGG - chr3_3:77565785-77565804 Msa0474660:CDS 20.0%
! AGATCAAAGAGAAATCAAAA+TGG - chr3_3:77564479-77564498 Msa0474660:three_prime_UTR 25.0%
! AAAAGAGAATGATCAAAGAA+AGG + chr3_3:77564730-77564749 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG - chr3_3:77564788-77564807 Msa0474660:CDS 25.0%
! TTATCAGGCAATTTATCAAA+GGG + chr3_3:77564835-77564854 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG + chr3_3:77564836-77564855 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG + chr3_3:77564965-77564984 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG + chr3_3:77565243-77565262 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG + chr3_3:77565309-77565328 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG - chr3_3:77565339-77565358 Msa0474660:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG - chr3_3:77565369-77565388 Msa0474660:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG - chr3_3:77565494-77565513 Msa0474660:intron 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG + chr3_3:77565606-77565625 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG - chr3_3:77565632-77565651 Msa0474660:CDS 25.0%
! AAAGAACATGAATGCATTAA+AGG + chr3_3:77565777-77565796 None:intergenic 25.0%
! AGATCAAAGAGAAATCAAAA+TGG - chr3_3:77564479-77564498 Msa0474660:three_prime_UTR 25.0%
! AAAAGAGAATGATCAAAGAA+AGG + chr3_3:77564730-77564749 None:intergenic 25.0%
!!! TTTGTTGATAATAATGTTGC+AGG - chr3_3:77564788-77564807 Msa0474660:CDS 25.0%
! TTATCAGGCAATTTATCAAA+GGG + chr3_3:77564835-77564854 None:intergenic 25.0%
! TTTATCAGGCAATTTATCAA+AGG + chr3_3:77564836-77564855 None:intergenic 25.0%
! TGATAAATATTCATATGGCA+TGG + chr3_3:77564965-77564984 None:intergenic 25.0%
!!! TCTGCTTTAAGTTCTAAATT+TGG + chr3_3:77565243-77565262 None:intergenic 25.0%
! ACTTTAGACCTTAATAAACT+TGG + chr3_3:77565309-77565328 None:intergenic 25.0%
! ACTGATAAGAAAGGAAAAAT+AGG - chr3_3:77565339-77565358 Msa0474660:intron 25.0%
! TTAAGAAGCAAAAGAAATAC+GGG - chr3_3:77565369-77565388 Msa0474660:intron 25.0%
! AAATGAAACAGATGTTAGAA+AGG - chr3_3:77565494-77565513 Msa0474660:intron 25.0%
!!! CAAAAACAAAAATAATGGGT+AGG + chr3_3:77565606-77565625 None:intergenic 25.0%
! TTTATTATGCTAATGTCAAC+AGG - chr3_3:77565632-77565651 Msa0474660:CDS 25.0%
! AAAGAACATGAATGCATTAA+AGG + chr3_3:77565777-77565796 None:intergenic 25.0%
CTATGAATTGAGGAAATGAA+TGG + chr3_3:77564440-77564459 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG + chr3_3:77564523-77564542 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG + chr3_3:77564616-77564635 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG + chr3_3:77564617-77564636 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG + chr3_3:77564623-77564642 None:intergenic 30.0%
TAAGCAACTTGTAGTTGATT+AGG + chr3_3:77564636-77564655 None:intergenic 30.0%
AATCAACTACAAGTTGCTTA+TGG - chr3_3:77564636-77564655 Msa0474660:intron 30.0%
TATCAGGCAATTTATCAAAG+GGG + chr3_3:77564834-77564853 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG - chr3_3:77565083-77565102 Msa0474660:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG + chr3_3:77565197-77565216 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG + chr3_3:77565240-77565259 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG - chr3_3:77565403-77565422 Msa0474660:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG + chr3_3:77565566-77565585 None:intergenic 30.0%
!!! AACAACACATTTTAGCTGAA+TGG - chr3_3:77565718-77565737 Msa0474660:CDS 30.0%
ATTGAACAGATGGAACTAAA+AGG + chr3_3:77565834-77565853 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG - chr3_3:77565960-77565979 Msa0474660:five_prime_UTR 30.0%
CTATGAATTGAGGAAATGAA+TGG + chr3_3:77564440-77564459 None:intergenic 30.0%
TGATAATCTTGTAGTGTGAA+GGG + chr3_3:77564523-77564542 None:intergenic 30.0%
AGGATGAAGTAAAAGGTTAA+GGG + chr3_3:77564616-77564635 None:intergenic 30.0%
TAGGATGAAGTAAAAGGTTA+AGG + chr3_3:77564617-77564636 None:intergenic 30.0%
GTTGATTAGGATGAAGTAAA+AGG + chr3_3:77564623-77564642 None:intergenic 30.0%
TAAGCAACTTGTAGTTGATT+AGG + chr3_3:77564636-77564655 None:intergenic 30.0%
AATCAACTACAAGTTGCTTA+TGG - chr3_3:77564636-77564655 Msa0474660:intron 30.0%
TATCAGGCAATTTATCAAAG+GGG + chr3_3:77564834-77564853 None:intergenic 30.0%
AAGTACAGAGAAAGAAAATC+AGG - chr3_3:77565083-77565102 Msa0474660:intron 30.0%
! TCTAAAATGTGTTGCCTATA+TGG + chr3_3:77565197-77565216 None:intergenic 30.0%
!! GCTTTAAGTTCTAAATTTGG+TGG + chr3_3:77565240-77565259 None:intergenic 30.0%
GCATTATGATTGTCTCAAAA+TGG - chr3_3:77565403-77565422 Msa0474660:intron 30.0%
AGGCAAAAAGAAAATGACTA+TGG + chr3_3:77565566-77565585 None:intergenic 30.0%
!!! AACAACACATTTTAGCTGAA+TGG - chr3_3:77565718-77565737 Msa0474660:CDS 30.0%
ATTGAACAGATGGAACTAAA+AGG + chr3_3:77565834-77565853 None:intergenic 30.0%
TGAACAAAAGGCTTAAAGTA+TGG - chr3_3:77565960-77565979 Msa0474660:five_prime_UTR 30.0%
AAAAGTGGGAAAAAGTTGTG+TGG - chr3_3:77564313-77564332 Msa0474660:three_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG - chr3_3:77564314-77564333 Msa0474660:three_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG + chr3_3:77564360-77564379 None:intergenic 35.0%
TTGTGTGTTGTGGAAAATTC+TGG + chr3_3:77564403-77564422 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG + chr3_3:77564413-77564432 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG + chr3_3:77564524-77564543 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG + chr3_3:77564582-77564601 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG + chr3_3:77564691-77564710 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG - chr3_3:77564806-77564825 Msa0474660:CDS 35.0%
ATCAGGCAATTTATCAAAGG+GGG + chr3_3:77564833-77564852 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG - chr3_3:77564897-77564916 Msa0474660:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG - chr3_3:77565141-77565160 Msa0474660:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG + chr3_3:77565194-77565213 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG + chr3_3:77565468-77565487 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG + chr3_3:77565469-77565488 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG - chr3_3:77565532-77565551 Msa0474660:intron 35.0%
AGGAGTGAACATATTAAGCA+AGG + chr3_3:77565586-77565605 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG + chr3_3:77565844-77565863 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG + chr3_3:77565859-77565878 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG + chr3_3:77565955-77565974 None:intergenic 35.0%
AAAAGTGGGAAAAAGTTGTG+TGG - chr3_3:77564313-77564332 Msa0474660:three_prime_UTR 35.0%
AAAGTGGGAAAAAGTTGTGT+GGG - chr3_3:77564314-77564333 Msa0474660:three_prime_UTR 35.0%
!! TAATTGGTTTGAATCCTACG+TGG + chr3_3:77564360-77564379 None:intergenic 35.0%
TTGTGTGTTGTGGAAAATTC+TGG + chr3_3:77564403-77564422 None:intergenic 35.0%
AAGAGAATAGTTGTGTGTTG+TGG + chr3_3:77564413-77564432 None:intergenic 35.0%
GTGATAATCTTGTAGTGTGA+AGG + chr3_3:77564524-77564543 None:intergenic 35.0%
AAAGATGTCTTGAGAGTAGA+TGG + chr3_3:77564582-77564601 None:intergenic 35.0%
! ACGACAGATATAAGCTTGTT+TGG + chr3_3:77564691-77564710 None:intergenic 35.0%
GCAGGTATATTTACAATGAG+AGG - chr3_3:77564806-77564825 Msa0474660:CDS 35.0%
ATCAGGCAATTTATCAAAGG+GGG + chr3_3:77564833-77564852 None:intergenic 35.0%
TGTCCACTATTACTCATAGA+TGG - chr3_3:77564897-77564916 Msa0474660:intron 35.0%
GTTAGGTTCAGTGAATTTGA+CGG - chr3_3:77565141-77565160 Msa0474660:intron 35.0%
AAAATGTGTTGCCTATATGG+CGG + chr3_3:77565194-77565213 None:intergenic 35.0%
TTGTTGACATCTGTTGCATA+GGG + chr3_3:77565468-77565487 None:intergenic 35.0%
TTTGTTGACATCTGTTGCAT+AGG + chr3_3:77565469-77565488 None:intergenic 35.0%
TCCAAAGAGATGAAGCAATT+GGG - chr3_3:77565532-77565551 Msa0474660:intron 35.0%
AGGAGTGAACATATTAAGCA+AGG + chr3_3:77565586-77565605 None:intergenic 35.0%
GCTATTGGAAATTGAACAGA+TGG + chr3_3:77565844-77565863 None:intergenic 35.0%
AACATTCTTGTGCAAGCTAT+TGG + chr3_3:77565859-77565878 None:intergenic 35.0%
! TAAGCCTTTTGTTCAGTCAT+AGG + chr3_3:77565955-77565974 None:intergenic 35.0%
AAGTGGGAAAAAGTTGTGTG+GGG - chr3_3:77564315-77564334 Msa0474660:three_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG - chr3_3:77564322-77564341 Msa0474660:three_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG + chr3_3:77564376-77564395 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG + chr3_3:77564385-77564404 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG + chr3_3:77564386-77564405 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG - chr3_3:77564444-77564463 Msa0474660:three_prime_UTR 40.0%
ATCTTCGAAGATTCTTCCTC+TGG + chr3_3:77564463-77564482 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG + chr3_3:77564520-77564539 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG + chr3_3:77564577-77564596 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG + chr3_3:77564903-77564922 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG - chr3_3:77564900-77564919 Msa0474660:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG - chr3_3:77565124-77565143 Msa0474660:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG - chr3_3:77565161-77565180 Msa0474660:intron 40.0%
TGAATTTGACAGAATCACGG+TGG - chr3_3:77565164-77565183 Msa0474660:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG - chr3_3:77565420-77565439 Msa0474660:CDS 40.0%
TAGGGCTTAAACCTTCGTTT+GGG + chr3_3:77565450-77565469 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG + chr3_3:77565451-77565470 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG - chr3_3:77565531-77565550 Msa0474660:intron 40.0%
ACCCAATTGCTTCATCTCTT+TGG + chr3_3:77565536-77565555 None:intergenic 40.0%
AAGTGGGAAAAAGTTGTGTG+GGG - chr3_3:77564315-77564334 Msa0474660:three_prime_UTR 40.0%
AAAAAGTTGTGTGGGGAGTA+TGG - chr3_3:77564322-77564341 Msa0474660:three_prime_UTR 40.0%
! TGAGTCTGTAAGGGTGTAAT+TGG + chr3_3:77564376-77564395 None:intergenic 40.0%
TCTGGTGATTGAGTCTGTAA+GGG + chr3_3:77564385-77564404 None:intergenic 40.0%
TTCTGGTGATTGAGTCTGTA+AGG + chr3_3:77564386-77564405 None:intergenic 40.0%
TTTCCTCAATTCATAGCCAG+AGG - chr3_3:77564444-77564463 Msa0474660:three_prime_UTR 40.0%
ATCTTCGAAGATTCTTCCTC+TGG + chr3_3:77564463-77564482 None:intergenic 40.0%
TAATCTTGTAGTGTGAAGGG+AGG + chr3_3:77564520-77564539 None:intergenic 40.0%
TGTCTTGAGAGTAGATGGAT+TGG + chr3_3:77564577-77564596 None:intergenic 40.0%
CCTCCATCTATGAGTAATAG+TGG + chr3_3:77564903-77564922 None:intergenic 40.0%
CCACTATTACTCATAGATGG+AGG - chr3_3:77564900-77564919 Msa0474660:intron 40.0%
ATGGCTTCTAAGTGCATGTT+AGG - chr3_3:77565124-77565143 Msa0474660:intron 40.0%
CGGTGAATTTGACAGAATCA+CGG - chr3_3:77565161-77565180 Msa0474660:intron 40.0%
TGAATTTGACAGAATCACGG+TGG - chr3_3:77565164-77565183 Msa0474660:intron 40.0%
! AAATGGCGTTTTGCAGTTTG+TGG - chr3_3:77565420-77565439 Msa0474660:CDS 40.0%
TAGGGCTTAAACCTTCGTTT+GGG + chr3_3:77565450-77565469 None:intergenic 40.0%
ATAGGGCTTAAACCTTCGTT+TGG + chr3_3:77565451-77565470 None:intergenic 40.0%
CTCCAAAGAGATGAAGCAAT+TGG - chr3_3:77565531-77565550 Msa0474660:intron 40.0%
ACCCAATTGCTTCATCTCTT+TGG + chr3_3:77565536-77565555 None:intergenic 40.0%
CTTCCTCTGGCTATGAATTG+AGG + chr3_3:77564450-77564469 None:intergenic 45.0%
!! TAGATGGATTGGAGAGAGGT+CGG + chr3_3:77564566-77564585 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+AGG + chr3_3:77564570-77564589 None:intergenic 45.0%
TTGTTTGGAAGCTACACGCA+TGG + chr3_3:77564676-77564695 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG - chr3_3:77564696-77564715 Msa0474660:intron 45.0%
CTTATATCTGTCGTGACTGC+GGG - chr3_3:77564697-77564716 Msa0474660:intron 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG + chr3_3:77564850-77564869 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG - chr3_3:77564847-77564866 Msa0474660:intron 45.0%
TGCAAGAACTACAACTCCCA+CGG + chr3_3:77565680-77565699 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG - chr3_3:77565948-77565967 Msa0474660:five_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG + chr3_3:77565952-77565971 None:intergenic 45.0%
CTTCCTCTGGCTATGAATTG+AGG + chr3_3:77564450-77564469 None:intergenic 45.0%
!! TAGATGGATTGGAGAGAGGT+CGG + chr3_3:77564566-77564585 None:intergenic 45.0%
!! AGAGTAGATGGATTGGAGAG+AGG + chr3_3:77564570-77564589 None:intergenic 45.0%
TTGTTTGGAAGCTACACGCA+TGG + chr3_3:77564676-77564695 None:intergenic 45.0%
GCTTATATCTGTCGTGACTG+CGG - chr3_3:77564696-77564715 Msa0474660:intron 45.0%
CTTATATCTGTCGTGACTGC+GGG - chr3_3:77564697-77564716 Msa0474660:intron 45.0%
!! CCAGGGCAGAAGTATTTATC+AGG + chr3_3:77564850-77564869 None:intergenic 45.0%
CCTGATAAATACTTCTGCCC+TGG - chr3_3:77564847-77564866 Msa0474660:intron 45.0%
TGCAAGAACTACAACTCCCA+CGG + chr3_3:77565680-77565699 None:intergenic 45.0%
GCCACCTATGACTGAACAAA+AGG - chr3_3:77565948-77565967 Msa0474660:five_prime_UTR 45.0%
! GCCTTTTGTTCAGTCATAGG+TGG + chr3_3:77565952-77565971 None:intergenic 45.0%
!! ATTTATAAAAAAAAAAAAGT+GGG - chr3_3:77564299-77564318 Msa0474660:three_prime_UTR 5.0%
!! ATTTATAAAAAAAAAAAAGT+GGG - chr3_3:77564299-77564318 Msa0474660:three_prime_UTR 5.0%
TGAATCCTACGTGGAAAGCG+TGG + chr3_3:77564351-77564370 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG - chr3_3:77564494-77564513 Msa0474660:three_prime_UTR 50.0%
AAGTTGCTTATGGACCTCCC+AGG - chr3_3:77564646-77564665 Msa0474660:intron 50.0%
GCTACACGCATGGTAAACCT+GGG + chr3_3:77564666-77564685 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG + chr3_3:77564667-77564686 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG - chr3_3:77565180-77565199 Msa0474660:intron 50.0%
ATGAGACCAGTCTCTGTGAG+TGG + chr3_3:77565275-77565294 None:intergenic 50.0%
TTTGTGGTGCTCCCAAACGA+AGG - chr3_3:77565436-77565455 Msa0474660:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG - chr3_3:77565660-77565679 Msa0474660:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG - chr3_3:77565661-77565680 Msa0474660:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG - chr3_3:77565679-77565698 Msa0474660:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG + chr3_3:77565945-77565964 None:intergenic 50.0%
TGAATCCTACGTGGAAAGCG+TGG + chr3_3:77564351-77564370 None:intergenic 50.0%
! CAAAATGGCCTTGCAAGTGC+AGG - chr3_3:77564494-77564513 Msa0474660:three_prime_UTR 50.0%
AAGTTGCTTATGGACCTCCC+AGG - chr3_3:77564646-77564665 Msa0474660:intron 50.0%
GCTACACGCATGGTAAACCT+GGG + chr3_3:77564666-77564685 None:intergenic 50.0%
AGCTACACGCATGGTAAACC+TGG + chr3_3:77564667-77564686 None:intergenic 50.0%
!! ACGGTGGATTACCGCCATAT+AGG - chr3_3:77565180-77565199 Msa0474660:intron 50.0%
ATGAGACCAGTCTCTGTGAG+TGG + chr3_3:77565275-77565294 None:intergenic 50.0%
TTTGTGGTGCTCCCAAACGA+AGG - chr3_3:77565436-77565455 Msa0474660:CDS 50.0%
ACTTCCTATTGCAGTTGCCG+TGG - chr3_3:77565660-77565679 Msa0474660:CDS 50.0%
CTTCCTATTGCAGTTGCCGT+GGG - chr3_3:77565661-77565680 Msa0474660:CDS 50.0%
GTGGGAGTTGTAGTTCTTGC+AGG - chr3_3:77565679-77565698 Msa0474660:CDS 50.0%
GTTCAGTCATAGGTGGCAAC+TGG + chr3_3:77565945-77565964 None:intergenic 50.0%
! TGGATTGGAGAGAGGTCGGA+GGG + chr3_3:77564562-77564581 None:intergenic 55.0%
!! ATGGATTGGAGAGAGGTCGG+AGG + chr3_3:77564563-77564582 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG + chr3_3:77564663-77564682 None:intergenic 55.0%
TCACTGCCACTCACAGAGAC+TGG - chr3_3:77565266-77565285 Msa0474660:intron 55.0%
ACTCCCACGGCAACTGCAAT+AGG + chr3_3:77565667-77565686 None:intergenic 55.0%
! TGGATTGGAGAGAGGTCGGA+GGG + chr3_3:77564562-77564581 None:intergenic 55.0%
!! ATGGATTGGAGAGAGGTCGG+AGG + chr3_3:77564563-77564582 None:intergenic 55.0%
ACACGCATGGTAAACCTGGG+AGG + chr3_3:77564663-77564682 None:intergenic 55.0%
TCACTGCCACTCACAGAGAC+TGG - chr3_3:77565266-77565285 Msa0474660:intron 55.0%
ACTCCCACGGCAACTGCAAT+AGG + chr3_3:77565667-77565686 None:intergenic 55.0%
GGATGCCACGCTTTCCACGT+AGG - chr3_3:77564343-77564362 Msa0474660:three_prime_UTR 60.0%
AAGGGAGGCCTGCACTTGCA+AGG + chr3_3:77564505-77564524 None:intergenic 60.0%
TTGGAGAGAGGTCGGAGGGT+AGG + chr3_3:77564558-77564577 None:intergenic 60.0%
GGATGCCACGCTTTCCACGT+AGG - chr3_3:77564343-77564362 Msa0474660:three_prime_UTR 60.0%
AAGGGAGGCCTGCACTTGCA+AGG + chr3_3:77564505-77564524 None:intergenic 60.0%
TTGGAGAGAGGTCGGAGGGT+AGG + chr3_3:77564558-77564577 None:intergenic 60.0%
CGGAGGGTAGGAGTGGCAGT+AGG + chr3_3:77564546-77564565 None:intergenic 65.0%
GAGAGGTCGGAGGGTAGGAG+TGG + chr3_3:77564553-77564572 None:intergenic 65.0%
CGGAGGGTAGGAGTGGCAGT+AGG + chr3_3:77564546-77564565 None:intergenic 65.0%
GAGAGGTCGGAGGGTAGGAG+TGG + chr3_3:77564553-77564572 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77564298 77565987 77564298 ID=Msa0474660;Name=Msa0474660
chr3_3 mRNA 77564298 77565987 77564298 ID=Msa0474660-mRNA-1;Parent=Msa0474660;Name=Msa0474660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=47|1|1|1|1|1|4|255|209
chr3_3 exon 77564298 77564631 77564298 ID=Msa0474660-mRNA-1:exon:20776;Parent=Msa0474660-mRNA-1
chr3_3 exon 77564732 77564849 77564732 ID=Msa0474660-mRNA-1:exon:20775;Parent=Msa0474660-mRNA-1
chr3_3 exon 77565417 77565475 77565417 ID=Msa0474660-mRNA-1:exon:20774;Parent=Msa0474660-mRNA-1
chr3_3 exon 77565567 77565987 77565567 ID=Msa0474660-mRNA-1:exon:20773;Parent=Msa0474660-mRNA-1
chr3_3 five_prime_UTR 77565941 77565987 77565941 ID=Msa0474660-mRNA-1:five_prime_utr;Parent=Msa0474660-mRNA-1
chr3_3 CDS 77565567 77565940 77565567 ID=Msa0474660-mRNA-1:cds;Parent=Msa0474660-mRNA-1
chr3_3 CDS 77565417 77565475 77565417 ID=Msa0474660-mRNA-1:cds;Parent=Msa0474660-mRNA-1
chr3_3 CDS 77564732 77564849 77564732 ID=Msa0474660-mRNA-1:cds;Parent=Msa0474660-mRNA-1
chr3_3 CDS 77564553 77564631 77564553 ID=Msa0474660-mRNA-1:cds;Parent=Msa0474660-mRNA-1
chr3_3 three_prime_UTR 77564298 77564552 77564298 ID=Msa0474660-mRNA-1:three_prime_utr;Parent=Msa0474660-mRNA-1
Gene Sequence

>Msa0474660

ATGCCACGCTTTCCACGTAGGATTCAAACCAATTACACCCTTACAGACTCAATCACCAGAATTTTCCACAACACACAACTATTCTCTTATCTCCATTCATTTCCTCAATTCATAGCCAGAGGAAGAATCTTCGAAGATCAAAGAGAAATCAAAATGGCCTTGCAAGTGCAGGCCTCCCTTCACACTACAAGATTATCACCTACTGCCACTCCTACCCTCCGACCTCTCTCCAATCCATCTACTCTCAAGACATCTTTCTTCTCTCGTTCCCTTAACCTTTTACTTCATCCTAATCAACTACAAGTTGCTTATGGACCTCCCAGGTTTACCATGCGTGTAGCTTCCAAACAAGCTTATATCTGTCGTGACTGCGGGTATATTTACAATGAGAGGACCCCCTTTGATAAATTGCCTGATAAATACTTCTGCCCTGTTTGTGGTGCTCCCAAACGAAGGTTTAAGCCCTATGCAACAGATGTCAACAAAAAAGCAAATGAAACAGATGTTAGAAAGGCAAGAAAAGCTGAACTCCAAAGAGATGAAGCAATTGGGAAAGCACTTCCTATTGCAGTTGCCGTGGGAGTTGTAGTTCTTGCAGGATTATACTTCTATCTCAACAACACATTTTAG

Protein sequence

>Msa0474660

MPRFPRRIQTNYTLTDSITRIFHNTQLFSYLHSFPQFIARGRIFEDQREIKMALQVQASLHTTRLSPTATPTLRPLSNPSTLKTSFFSRSLNLLLHPNQLQVAYGPPRFTMRVASKQAYICRDCGYIYNERTPFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETDVRKARKAELQRDEAIGKALPIAVAVGVVVLAGLYFYLNNTF*