AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0341950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341950 MtrunA17_Chr2g0331621 97.279 147 3 1 1 146 1 147 4.22e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0341950 AT1G52230.1 79.452 146 29 1 1 146 1 145 2.19e-81 236
Msa0341950 AT3G16140.1 78.082 146 31 1 1 146 1 145 8.09e-80 232

Find 61 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAAATCCAAGAATTTA+AGG 0.134528 2_4:-63855165 Msa0341950:intron
GTGAAAGTACCTTAAATTCT+TGG 0.244082 2_4:+63855156 None:intergenic
CTTGCTGGCAGTTCCATTAC+TGG 0.265222 2_4:-63855220 Msa0341950:CDS
TATTAGAAACTTTCGGTATT+GGG 0.309147 2_4:-63853421 Msa0341950:three_prime_UTR
TACTTCAGTGCCACAGCTTC+AGG 0.317013 2_4:-63853893 Msa0341950:CDS
AAAAGTAAAACACATTGAAT+TGG 0.320664 2_4:+63853794 None:intergenic
TACTTTGATTTGGAGGATAT+TGG 0.323961 2_4:-63854831 Msa0341950:CDS
CAAGAGTGTGTACTTTGATT+TGG 0.336220 2_4:-63854841 Msa0341950:CDS
TAGTATGCAGCAATTTCATT+AGG 0.352262 2_4:-63853629 Msa0341950:three_prime_UTR
ATATTAGAAACTTTCGGTAT+TGG 0.353474 2_4:-63853422 Msa0341950:three_prime_UTR
TTGCCACGGGGACCGAGCTT+TGG 0.360365 2_4:+63853833 None:intergenic
CTCAATGTTAAGGGTCTTGC+TGG 0.365303 2_4:-63855235 Msa0341950:CDS
ATATGAAAATGAAGATAATA+AGG 0.379488 2_4:+63853500 None:intergenic
CTCACCATACAACCCTCTTC+AGG 0.381984 2_4:-63854766 Msa0341950:intron
ACCAGCTGGTCTCAATGTTA+AGG 0.384673 2_4:-63855245 Msa0341950:CDS
CCACGGGGACCGAGCTTTGG+TGG 0.404075 2_4:+63853836 None:intergenic
TTAGGATGTTGGTCTTAATT+CGG 0.409293 2_4:-63853611 Msa0341950:three_prime_UTR
GGCTCTGTGGTAGCAAAGTA+TGG 0.420308 2_4:-63854867 Msa0341950:CDS
AGCTGTGGACCTTTCTTGAT+TGG 0.426964 2_4:+63853860 None:intergenic
CACTTGATATTAGAAACTTT+CGG 0.427007 2_4:-63853428 Msa0341950:three_prime_UTR
CAGCAATTTCATTAGGATGT+TGG 0.439676 2_4:-63853622 Msa0341950:three_prime_UTR
GATCAAAATGTGACATGCTT+TGG 0.444197 2_4:+63855340 None:intergenic
AAAGTAAAACACATTGAATT+GGG 0.446423 2_4:+63853795 None:intergenic
CCAGCTGGTCTCAATGTTAA+GGG 0.447321 2_4:-63855244 Msa0341950:CDS
GTGGAAAATAATAAACCATA+TGG 0.455212 2_4:-63855296 Msa0341950:exon
ACTGTATTAAGACTAGTAAT+AGG 0.455465 2_4:+63853689 None:intergenic
GAGTGTGTACTTTGATTTGG+AGG 0.467087 2_4:-63854838 Msa0341950:CDS
GAACGTATAAAACACATAAA+CGG 0.473990 2_4:+63853588 None:intergenic
AGCATCATCATATGATTCAA+TGG 0.483561 2_4:+63853336 None:intergenic
GAGGATATTGGCAACACTAC+AGG 0.483887 2_4:-63854819 Msa0341950:CDS
AATTCTTGGATTTGAAACTC+TGG 0.485960 2_4:+63855170 None:intergenic
CAAACCTGAAGAGGGTTGTA+TGG 0.501808 2_4:+63854762 None:intergenic
CAAGAGTTGAACCACCTCCT+AGG 0.515089 2_4:+63853918 None:intergenic
AATAATCCTCTCTTTGTGAA+TGG 0.515909 2_4:+63853956 None:intergenic
CCCTTAACATTGAGACCAGC+TGG 0.523582 2_4:+63855244 None:intergenic
AGGTAGCAAGGGAAGCCATA+TGG 0.523790 2_4:+63855281 None:intergenic
CCGAGCTTTGGTGGAAGCTG+TGG 0.524654 2_4:+63853845 None:intergenic
GACATTCTACCAATCAAGAA+AGG 0.540823 2_4:-63853869 Msa0341950:CDS
AGATAGCTTAGTTCCAGTAA+TGG 0.548416 2_4:+63855207 None:intergenic
AGCTGGTTGTACACAAGCTA+AGG 0.551993 2_4:+63855261 None:intergenic
GCAGCTCCATTCACAAAGAG+AGG 0.555627 2_4:-63853962 Msa0341950:CDS
TCCAGTAGACAAACCTGAAG+AGG 0.558714 2_4:+63854753 None:intergenic
ACAGGTCAGTGGGATTTGTA+CGG 0.573529 2_4:-63854801 Msa0341950:CDS
TTAGCTTGTGTACAACCAGC+TGG 0.579471 2_4:-63855259 Msa0341950:CDS
GTACACAAGCTAAGGTAGCA+AGG 0.579499 2_4:+63855269 None:intergenic
GATTTGAAACTCTGGCGAGA+GGG 0.583566 2_4:+63855178 None:intergenic
CCACAGCTTCCACCAAAGCT+CGG 0.583979 2_4:-63853845 Msa0341950:CDS
ACAAGAGGAAGAGAATTAAG+TGG 0.584597 2_4:-63855315 Msa0341950:five_prime_UTR
AACTAAATTAGATCTTGCCA+CGG 0.594009 2_4:+63853819 None:intergenic
TGGCAACACTACAGGTCAGT+GGG 0.596869 2_4:-63854811 Msa0341950:CDS
ACTAAATTAGATCTTGCCAC+GGG 0.597169 2_4:+63853820 None:intergenic
GGATTTGAAACTCTGGCGAG+AGG 0.599558 2_4:+63855177 None:intergenic
CCAGTAGACAAACCTGAAGA+GGG 0.614925 2_4:+63854754 None:intergenic
TACACAAGCTAAGGTAGCAA+GGG 0.622521 2_4:+63855270 None:intergenic
TGAAGAGGGTTGTATGGTGA+GGG 0.652580 2_4:+63854768 None:intergenic
AACTTGCAGGAGTGGCTCTG+TGG 0.654086 2_4:-63854880 Msa0341950:intron
CCACCAAAGCTCGGTCCCCG+TGG 0.657534 2_4:-63853836 Msa0341950:CDS
TTGGCAACACTACAGGTCAG+TGG 0.661910 2_4:-63854812 Msa0341950:CDS
TAGAATGTCACCTGAAGCTG+TGG 0.676047 2_4:+63853883 None:intergenic
CTGAAGAGGGTTGTATGGTG+AGG 0.677728 2_4:+63854767 None:intergenic
CTAAATTAGATCTTGCCACG+GGG 0.688209 2_4:+63853821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATCTAATCTAAAT+AGG + chr2_4:63853709-63853728 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG - chr2_4:63854288-63854307 Msa0341950:intron 15.0%
!! TTTAATATGAGAATGATTTA+TGG - chr2_4:63854539-63854558 Msa0341950:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG + chr2_4:63854590-63854609 None:intergenic 15.0%
!! ATCAAAGAAATCAATTAATT+TGG + chr2_4:63854590-63854609 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG + chr2_4:63855194-63855213 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG - chr2_4:63855193-63855212 Msa0341950:CDS 15.0%
!! ATAACTTATCTAATCTAAAT+AGG + chr2_4:63853709-63853728 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG - chr2_4:63854288-63854307 Msa0341950:intron 15.0%
!! TTTAATATGAGAATGATTTA+TGG - chr2_4:63854539-63854558 Msa0341950:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG + chr2_4:63854590-63854609 None:intergenic 15.0%
!! ATCAAAGAAATCAATTAATT+TGG + chr2_4:63854590-63854609 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG + chr2_4:63855194-63855213 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG - chr2_4:63855193-63855212 Msa0341950:CDS 15.0%
!! CATTAGCGTAATAAAAAAAA+CGG + chr2_4:63853614-63853633 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG + chr2_4:63854054-63854073 None:intergenic 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG + chr2_4:63854405-63854424 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG - chr2_4:63854464-63854483 Msa0341950:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG + chr2_4:63854899-63854918 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG + chr2_4:63854900-63854919 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG + chr2_4:63855318-63855337 None:intergenic 20.0%
!! CATTAGCGTAATAAAAAAAA+CGG + chr2_4:63853614-63853633 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG + chr2_4:63854054-63854073 None:intergenic 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG + chr2_4:63854405-63854424 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG - chr2_4:63854464-63854483 Msa0341950:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG + chr2_4:63854899-63854918 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG + chr2_4:63854900-63854919 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG + chr2_4:63855318-63855337 None:intergenic 20.0%
! GTGGAAAATAATAAACCATA+TGG - chr2_4:63853395-63853414 Msa0341950:three_prime_UTR 25.0%
! GTTTCAAATCCAAGAATTTA+AGG - chr2_4:63853526-63853545 Msa0341950:three_prime_UTR 25.0%
!!! ACATAACATAATTAACTTGC+AGG - chr2_4:63853798-63853817 Msa0341950:three_prime_UTR 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG + chr2_4:63854178-63854197 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG + chr2_4:63854400-63854419 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG + chr2_4:63855005-63855024 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG + chr2_4:63855106-63855125 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG - chr2_4:63855263-63855282 Msa0341950:CDS 25.0%
! ATATTAGAAACTTTCGGTAT+TGG - chr2_4:63855269-63855288 Msa0341950:CDS 25.0%
! TATTAGAAACTTTCGGTATT+GGG - chr2_4:63855270-63855289 Msa0341950:CDS 25.0%
! GTGGAAAATAATAAACCATA+TGG - chr2_4:63853395-63853414 Msa0341950:three_prime_UTR 25.0%
! GTTTCAAATCCAAGAATTTA+AGG - chr2_4:63853526-63853545 Msa0341950:three_prime_UTR 25.0%
!!! ACATAACATAATTAACTTGC+AGG - chr2_4:63853798-63853817 Msa0341950:three_prime_UTR 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG + chr2_4:63854178-63854197 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG + chr2_4:63854400-63854419 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG + chr2_4:63855005-63855024 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG + chr2_4:63855106-63855125 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG - chr2_4:63855263-63855282 Msa0341950:CDS 25.0%
! ATATTAGAAACTTTCGGTAT+TGG - chr2_4:63855269-63855288 Msa0341950:CDS 25.0%
! TATTAGAAACTTTCGGTATT+GGG - chr2_4:63855270-63855289 Msa0341950:CDS 25.0%
! AATTCTTGGATTTGAAACTC+TGG + chr2_4:63853524-63853543 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG + chr2_4:63853538-63853557 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG - chr2_4:63853860-63853879 Msa0341950:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG - chr2_4:63854018-63854037 Msa0341950:intron 30.0%
GACACTTAATATAACACAGA+GGG + chr2_4:63854282-63854301 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG + chr2_4:63854283-63854302 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG + chr2_4:63854738-63854757 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG + chr2_4:63854875-63854894 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG - chr2_4:63855062-63855081 Msa0341950:intron 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG - chr2_4:63855080-63855099 Msa0341950:intron 30.0%
! AATTCTTGGATTTGAAACTC+TGG + chr2_4:63853524-63853543 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG + chr2_4:63853538-63853557 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG - chr2_4:63853860-63853879 Msa0341950:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG - chr2_4:63854018-63854037 Msa0341950:intron 30.0%
GACACTTAATATAACACAGA+GGG + chr2_4:63854282-63854301 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG + chr2_4:63854283-63854302 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG + chr2_4:63854738-63854757 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG + chr2_4:63854875-63854894 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG - chr2_4:63855062-63855081 Msa0341950:intron 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG - chr2_4:63855080-63855099 Msa0341950:intron 30.0%
GATCAAAATGTGACATGCTT+TGG + chr2_4:63853354-63853373 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG - chr2_4:63853361-63853380 Msa0341950:three_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG - chr2_4:63853376-63853395 Msa0341950:three_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG + chr2_4:63853487-63853506 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG - chr2_4:63853803-63853822 Msa0341950:three_prime_UTR 35.0%
! CAAGAGTGTGTACTTTGATT+TGG - chr2_4:63853850-63853869 Msa0341950:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG - chr2_4:63854024-63854043 Msa0341950:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG + chr2_4:63854257-63854276 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG - chr2_4:63854756-63854775 Msa0341950:intron 35.0%
GACATTCTACCAATCAAGAA+AGG - chr2_4:63854822-63854841 Msa0341950:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG + chr2_4:63854874-63854893 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG - chr2_4:63855069-63855088 Msa0341950:intron 35.0%
GATCAAAATGTGACATGCTT+TGG + chr2_4:63853354-63853373 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG - chr2_4:63853361-63853380 Msa0341950:three_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG - chr2_4:63853376-63853395 Msa0341950:three_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG + chr2_4:63853487-63853506 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG - chr2_4:63853803-63853822 Msa0341950:three_prime_UTR 35.0%
! CAAGAGTGTGTACTTTGATT+TGG - chr2_4:63853850-63853869 Msa0341950:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG - chr2_4:63854024-63854043 Msa0341950:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG + chr2_4:63854257-63854276 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG - chr2_4:63854756-63854775 Msa0341950:intron 35.0%
GACATTCTACCAATCAAGAA+AGG - chr2_4:63854822-63854841 Msa0341950:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG + chr2_4:63854874-63854893 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG - chr2_4:63855069-63855088 Msa0341950:intron 35.0%
TACACAAGCTAAGGTAGCAA+GGG + chr2_4:63853424-63853443 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG + chr2_4:63853600-63853619 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG - chr2_4:63853853-63853872 Msa0341950:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG - chr2_4:63854028-63854047 Msa0341950:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG - chr2_4:63854157-63854176 Msa0341950:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG + chr2_4:63854267-63854286 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG + chr2_4:63854431-63854450 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG - chr2_4:63854759-63854778 Msa0341950:intron 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG - chr2_4:63854762-63854781 Msa0341950:intron 40.0%
CTAAATTAGATCTTGCCACG+GGG + chr2_4:63854873-63854892 None:intergenic 40.0%
TACACAAGCTAAGGTAGCAA+GGG + chr2_4:63853424-63853443 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG + chr2_4:63853600-63853619 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG - chr2_4:63853853-63853872 Msa0341950:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG - chr2_4:63854028-63854047 Msa0341950:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG - chr2_4:63854157-63854176 Msa0341950:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG + chr2_4:63854267-63854286 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG + chr2_4:63854431-63854450 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG - chr2_4:63854759-63854778 Msa0341950:intron 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG - chr2_4:63854762-63854781 Msa0341950:intron 40.0%
CTAAATTAGATCTTGCCACG+GGG + chr2_4:63854873-63854892 None:intergenic 40.0%
GTACACAAGCTAAGGTAGCA+AGG + chr2_4:63853425-63853444 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG + chr2_4:63853433-63853452 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG - chr2_4:63853432-63853451 Msa0341950:three_prime_UTR 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG - chr2_4:63853446-63853465 Msa0341950:three_prime_UTR 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG - chr2_4:63853447-63853466 Msa0341950:three_prime_UTR 45.0%
CTCAATGTTAAGGGTCTTGC+TGG - chr2_4:63853456-63853475 Msa0341950:three_prime_UTR 45.0%
! GATTTGAAACTCTGGCGAGA+GGG + chr2_4:63853516-63853535 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG - chr2_4:63853872-63853891 Msa0341950:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG - chr2_4:63853890-63853909 Msa0341950:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG + chr2_4:63853926-63853945 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG + chr2_4:63853932-63853951 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG + chr2_4:63853940-63853959 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG + chr2_4:63853941-63853960 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG + chr2_4:63854254-63854273 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG + chr2_4:63854811-63854830 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG + chr2_4:63854834-63854853 None:intergenic 45.0%
GTACACAAGCTAAGGTAGCA+AGG + chr2_4:63853425-63853444 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG + chr2_4:63853433-63853452 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG - chr2_4:63853432-63853451 Msa0341950:three_prime_UTR 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG - chr2_4:63853446-63853465 Msa0341950:three_prime_UTR 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG - chr2_4:63853447-63853466 Msa0341950:three_prime_UTR 45.0%
CTCAATGTTAAGGGTCTTGC+TGG - chr2_4:63853456-63853475 Msa0341950:three_prime_UTR 45.0%
! GATTTGAAACTCTGGCGAGA+GGG + chr2_4:63853516-63853535 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG - chr2_4:63853872-63853891 Msa0341950:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG - chr2_4:63853890-63853909 Msa0341950:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG + chr2_4:63853926-63853945 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG + chr2_4:63853932-63853951 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG + chr2_4:63853940-63853959 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG + chr2_4:63853941-63853960 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG + chr2_4:63854254-63854273 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG + chr2_4:63854811-63854830 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG + chr2_4:63854834-63854853 None:intergenic 45.0%
AGGTAGCAAGGGAAGCCATA+TGG + chr2_4:63853413-63853432 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG + chr2_4:63853450-63853469 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG - chr2_4:63853471-63853490 Msa0341950:three_prime_UTR 50.0%
! GGATTTGAAACTCTGGCGAG+AGG + chr2_4:63853517-63853536 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG - chr2_4:63853824-63853843 Msa0341950:exon 50.0%
TTGGCAACACTACAGGTCAG+TGG - chr2_4:63853879-63853898 Msa0341950:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG - chr2_4:63853880-63853899 Msa0341950:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG + chr2_4:63853927-63853946 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG - chr2_4:63853925-63853944 Msa0341950:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG - chr2_4:63853937-63853956 Msa0341950:CDS 50.0%
GCAGCTCCATTCACAAAGAG+AGG - chr2_4:63854729-63854748 Msa0341950:intron 50.0%
CAAGAGTTGAACCACCTCCT+AGG + chr2_4:63854776-63854795 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG - chr2_4:63854798-63854817 Msa0341950:CDS 50.0%
AGGTAGCAAGGGAAGCCATA+TGG + chr2_4:63853413-63853432 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG + chr2_4:63853450-63853469 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG - chr2_4:63853471-63853490 Msa0341950:three_prime_UTR 50.0%
! GGATTTGAAACTCTGGCGAG+AGG + chr2_4:63853517-63853536 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG - chr2_4:63853824-63853843 Msa0341950:exon 50.0%
TTGGCAACACTACAGGTCAG+TGG - chr2_4:63853879-63853898 Msa0341950:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG - chr2_4:63853880-63853899 Msa0341950:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG + chr2_4:63853927-63853946 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG - chr2_4:63853925-63853944 Msa0341950:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG - chr2_4:63853937-63853956 Msa0341950:CDS 50.0%
GCAGCTCCATTCACAAAGAG+AGG - chr2_4:63854729-63854748 Msa0341950:intron 50.0%
CAAGAGTTGAACCACCTCCT+AGG + chr2_4:63854776-63854795 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG - chr2_4:63854798-63854817 Msa0341950:CDS 50.0%
! AACTTGCAGGAGTGGCTCTG+TGG - chr2_4:63853811-63853830 Msa0341950:exon 55.0%
CCACAGCTTCCACCAAAGCT+CGG - chr2_4:63854846-63854865 Msa0341950:CDS 55.0%
! AACTTGCAGGAGTGGCTCTG+TGG - chr2_4:63853811-63853830 Msa0341950:exon 55.0%
CCACAGCTTCCACCAAAGCT+CGG - chr2_4:63854846-63854865 Msa0341950:CDS 55.0%
! CCGAGCTTTGGTGGAAGCTG+TGG + chr2_4:63854849-63854868 None:intergenic 60.0%
! CCGAGCTTTGGTGGAAGCTG+TGG + chr2_4:63854849-63854868 None:intergenic 60.0%
TTGCCACGGGGACCGAGCTT+TGG + chr2_4:63854861-63854880 None:intergenic 65.0%
TTGCCACGGGGACCGAGCTT+TGG + chr2_4:63854861-63854880 None:intergenic 65.0%
! CCACGGGGACCGAGCTTTGG+TGG + chr2_4:63854858-63854877 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG - chr2_4:63854855-63854874 Msa0341950:CDS 70.0%
! CCACGGGGACCGAGCTTTGG+TGG + chr2_4:63854858-63854877 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG - chr2_4:63854855-63854874 Msa0341950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 63853347 63855366 63853347 ID=Msa0341950;Name=Msa0341950
chr2_4 mRNA 63853347 63855366 63853347 ID=Msa0341950-mRNA-1;Parent=Msa0341950;Name=Msa0341950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=67|1|1|1|1|1|3|479|146
chr2_4 exon 63853347 63854005 63853347 ID=Msa0341950-mRNA-1:exon:20454;Parent=Msa0341950-mRNA-1
chr2_4 exon 63854767 63854893 63854767 ID=Msa0341950-mRNA-1:exon:20453;Parent=Msa0341950-mRNA-1
chr2_4 exon 63855166 63855366 63855166 ID=Msa0341950-mRNA-1:exon:20452;Parent=Msa0341950-mRNA-1
chr2_4 five_prime_UTR 63855300 63855366 63855300 ID=Msa0341950-mRNA-1:five_prime_utr;Parent=Msa0341950-mRNA-1
chr2_4 CDS 63855166 63855299 63855166 ID=Msa0341950-mRNA-1:cds;Parent=Msa0341950-mRNA-1
chr2_4 CDS 63854767 63854893 63854767 ID=Msa0341950-mRNA-1:cds;Parent=Msa0341950-mRNA-1
chr2_4 CDS 63853826 63854005 63853826 ID=Msa0341950-mRNA-1:cds;Parent=Msa0341950-mRNA-1
chr2_4 three_prime_UTR 63853347 63853825 63853347 ID=Msa0341950-mRNA-1:three_prime_utr;Parent=Msa0341950-mRNA-1
Gene Sequence

>Msa0341950

ATGGCTTCCCTTGCTACCTTAGCTTGTGTACAACCAGCTGGTCTCAATGTTAAGGGTCTTGCTGGCAGTTCCATTACTGGAACTAAGCTATCTTTCAAGCCCTCTCGCCAGAGTTTCAAATCCAAGAATTTAAGGAGTGGCTCTGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATATTGGCAACACTACAGGTCAGTGGGATTTGTACGGCTCAGATGCACCCTCACCATACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACAAAGAGAGGATTATTGCTCAAGTTTTTGATCCTAGGAGGTGGTTCAACTCTTGCATACTTCAGTGCCACAGCTTCAGGTGACATTCTACCAATCAAGAAAGGTCCACAGCTTCCACCAAAGCTCGGTCCCCGTGGCAAGATCTAA

Protein sequence

>Msa0341950

MASLATLACVQPAGLNVKGLAGSSITGTKLSFKPSRQSFKSKNLRSGSVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI*