AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130150 MtrunA17_Chr7g0275281 94.444 162 8 1 3 164 1 161 6.01e-101 287
Msa1130150 MtrunA17_Chr5g0412411 51.136 88 42 1 75 162 97 183 1.75e-28 103
Msa1130150 MtrunA17_Chr7g0276381 40.196 102 61 0 63 164 78 179 4.02e-22 87.4
Msa1130150 MtrunA17_Chr8g0345861 32.743 113 74 1 51 163 59 169 1.43e-16 72.8
Msa1130150 MtrunA17_Chr4g0004811 36.782 87 55 0 76 162 59 145 8.89e-16 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130150 AT4G01150.1 68.452 168 45 5 1 164 1 164 1.72e-72 215
Msa1130150 AT4G01150.2 60.484 124 41 5 1 120 1 120 1.59e-39 130
Msa1130150 AT4G38100.1 46.667 90 45 1 75 164 105 191 2.09e-24 94.0
Msa1130150 AT4G38100.2 46.667 90 45 1 75 164 65 151 4.41e-24 92.0
Msa1130150 AT1G52220.1 34.568 162 87 6 7 161 2 151 7.35e-17 73.6
Msa1130150 AT2G46820.2 38.554 83 51 0 81 163 91 173 1.06e-16 73.6
Msa1130150 AT2G46820.1 38.554 83 51 0 81 163 91 173 1.06e-16 73.6
Msa1130150 AT1G52220.2 34.568 162 86 6 7 161 2 150 2.80e-16 72.0

Find 62 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAAGTTGTTGTTGTTTA+AGG 0.093861 7_3:-82269144 None:intergenic
TTACCGATACCTTCTGTTTA+AGG 0.134213 7_3:+82270153 Msa1130150:CDS
CTTAAACAACAACAACTTTC+AGG 0.165400 7_3:+82269145 Msa1130150:CDS
AATAAACAAGTGTTTAATTA+AGG 0.215404 7_3:-82270793 None:intergenic
GTTTCAGCTTCCAAAGATTA+TGG 0.232736 7_3:+82270096 Msa1130150:intron
TTATCCACTGTCATGTGTTT+TGG 0.287531 7_3:-82268879 None:intergenic
GGGGAAGTGGAGTGGCGAGG+AGG 0.334522 7_3:-82269118 None:intergenic
GGGAAGTGGAGTGGCGAGGA+GGG 0.335779 7_3:-82269117 None:intergenic
CCTACCAACTCCATAATCTT+TGG 0.339884 7_3:-82270106 None:intergenic
AAGTCCACAGTGCTTCTATA+TGG 0.385074 7_3:+82269934 Msa1130150:CDS
TGAGTTGTTTACTGATTTGA+AGG 0.387775 7_3:+82269568 Msa1130150:CDS
TGGTTATCTTCAATCCTTGT+TGG 0.408776 7_3:+82269979 Msa1130150:CDS
GTTGCAGCAGCAGCAAGTGC+AGG 0.408982 7_3:+82269025 Msa1130150:CDS
GTGGAGCTTTAGTTGCTGTT+TGG 0.417611 7_3:+82269959 Msa1130150:CDS
AATACAGTTCTATTCAGTTC+CGG 0.418432 7_3:-82270510 None:intergenic
GTTTACTGATTTGAAGGAAA+AGG 0.439046 7_3:+82269574 Msa1130150:CDS
GAATTTGTAGAGATAGATAA+TGG 0.459192 7_3:+82269000 Msa1130150:exon
TACCAAGGGGACAGAGTTGA+TGG 0.465274 7_3:-82270004 None:intergenic
AGGTTGATATTTATAGAGAC+CGG 0.469248 7_3:-82270639 None:intergenic
CAATGAAATTGATTAATACA+AGG 0.470493 7_3:-82270659 None:intergenic
CAAATCAGTAAACAACTCAT+TGG 0.473251 7_3:-82269564 None:intergenic
GAGTGGCGAGGAGGGAGAAA+AGG 0.477206 7_3:-82269109 None:intergenic
GCACTGAAGAAGAAAATTGC+CGG 0.482146 7_3:+82270491 Msa1130150:CDS
AAGTTGTTGTTGTTTAAGGA+AGG 0.484853 7_3:-82269140 None:intergenic
GTTGTTGTTGTTTAAGGAAG+GGG 0.491337 7_3:-82269138 None:intergenic
GCTTCCAAAGATTATGGAGT+TGG 0.493722 7_3:+82270102 Msa1130150:intron
TGCCATCAACTCTGTCCCCT+TGG 0.495202 7_3:+82270002 Msa1130150:CDS
CTGATGCAGAGAAAACTTAC+GGG 0.496844 7_3:-82269498 None:intergenic
GGAATTCTATTCTATATCAA+AGG 0.506125 7_3:-82270616 None:intergenic
ATTATGGAGTTGGTAGGACT+AGG 0.507832 7_3:+82270112 Msa1130150:CDS
TCTGATGCAGAGAAAACTTA+CGG 0.508867 7_3:-82269499 None:intergenic
GAATTCTATTCTATATCAAA+GGG 0.511185 7_3:-82270615 None:intergenic
CTCTGTACAGTCTAGCAGAA+AGG 0.539958 7_3:+82270448 Msa1130150:intron
AGTTGTTGTTGTTTAAGGAA+GGG 0.546157 7_3:-82269139 None:intergenic
GGTTGATATTTATAGAGACC+GGG 0.550924 7_3:-82270638 None:intergenic
ACAGTGCTTCTATATGGTGG+TGG 0.552883 7_3:+82269940 Msa1130150:CDS
TAGCAGAAAGGAACTAGCTA+CGG 0.563569 7_3:+82270460 Msa1130150:CDS
CCAAAGATTATGGAGTTGGT+AGG 0.564360 7_3:+82270106 Msa1130150:CDS
GTGGATAACAAGCAAGGGTG+TGG 0.565840 7_3:+82268894 Msa1130150:five_prime_UTR
TTTGGCCTACCTTAAACAGA+AGG 0.581785 7_3:-82270162 None:intergenic
TTATGGAGTTGGTAGGACTA+GGG 0.584651 7_3:+82270113 Msa1130150:CDS
GTACAGTGTTAGTTCCTCCT+CGG 0.590474 7_3:+82269047 Msa1130150:CDS
GTATCGGTAAACAAACCATC+CGG 0.591701 7_3:-82270140 None:intergenic
TGATATAGAATAGAATTCCC+CGG 0.591832 7_3:+82270620 Msa1130150:three_prime_UTR
AAACAAACAAATGATGAGCA+AGG 0.597184 7_3:-82270555 None:intergenic
CTACCTTAAACAGAAGGTAT+CGG 0.603325 7_3:-82270156 None:intergenic
TTGTTGTTGTTTAAGGAAGG+GGG 0.608496 7_3:-82269137 None:intergenic
ATGACAGTGGATAACAAGCA+AGG 0.610141 7_3:+82268888 Msa1130150:five_prime_UTR
CAGAGTTGATGGCACCAACA+AGG 0.615176 7_3:-82269993 None:intergenic
TCCACAGTGCTTCTATATGG+TGG 0.616000 7_3:+82269937 Msa1130150:CDS
AGCAGAGCAGCGAGTAACGT+TGG 0.616254 7_3:-82269083 None:intergenic
AGAGCAGCGAGTAACGTTGG+TGG 0.622412 7_3:-82269080 None:intergenic
ATGAGCAAGGAAGATCAACT+TGG 0.629853 7_3:-82270542 None:intergenic
TAGGACTAGGGTACACCGGA+TGG 0.634002 7_3:+82270125 Msa1130150:CDS
TTGGTGGTTGTCAGTAGCCG+AGG 0.644018 7_3:-82269064 None:intergenic
TGACAGTGGATAACAAGCAA+GGG 0.648736 7_3:+82268889 Msa1130150:five_prime_UTR
GTGGTTGTCAGTAGCCGAGG+AGG 0.655188 7_3:-82269061 None:intergenic
TTGGTAGGACTAGGGTACAC+CGG 0.662768 7_3:+82270121 Msa1130150:CDS
GTTGATATTTATAGAGACCG+GGG 0.664014 7_3:-82270637 None:intergenic
TTTGTAGAGATAGATAATGG+CGG 0.677803 7_3:+82269003 Msa1130150:exon
TGTTCCAAAACACATGACAG+TGG 0.696030 7_3:+82268875 Msa1130150:five_prime_UTR
ACCACCATATAGAAGCACTG+TGG 0.769266 7_3:-82269938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATGAATCAATTTATA+AGG - chr7_3:82269606-82269625 None:intergenic 10.0%
!! TTTACAAAATTAATTCAAAA+TGG - chr7_3:82269643-82269662 None:intergenic 10.0%
!! ATAAAATGAATCAATTTATA+AGG - chr7_3:82269606-82269625 None:intergenic 10.0%
!! TTTACAAAATTAATTCAAAA+TGG - chr7_3:82269643-82269662 None:intergenic 10.0%
!! AGAAAAGAAAAGAAAATTAA+AGG - chr7_3:82269180-82269199 None:intergenic 15.0%
!! AATAAACAAGTGTTTAATTA+AGG - chr7_3:82270796-82270815 None:intergenic 15.0%
!! AGAAAAGAAAAGAAAATTAA+AGG - chr7_3:82269180-82269199 None:intergenic 15.0%
!! AATAAACAAGTGTTTAATTA+AGG - chr7_3:82270796-82270815 None:intergenic 15.0%
!! AGAAAAGAAAATTAAAGGAA+TGG - chr7_3:82269175-82269194 None:intergenic 20.0%
!!! ATCATTCATTATAAGTTGAA+AGG - chr7_3:82269281-82269300 None:intergenic 20.0%
!!! TATGAAAACAAGTTTGTTAT+AGG - chr7_3:82269314-82269333 None:intergenic 20.0%
!!! ATTGTATGTGTTATTAGAAT+CGG - chr7_3:82269684-82269703 None:intergenic 20.0%
!!! GCTTTTTTAAATTCACTTAT+TGG + chr7_3:82270038-82270057 Msa1130150:intron 20.0%
!! AAAATAGAATTGTTTCAGAT+TGG - chr7_3:82270074-82270093 None:intergenic 20.0%
!! AGAAATTTACACATTTGTAT+TGG + chr7_3:82270217-82270236 Msa1130150:intron 20.0%
!! GAATTCTATTCTATATCAAA+GGG - chr7_3:82270618-82270637 None:intergenic 20.0%
!! CAATGAAATTGATTAATACA+AGG - chr7_3:82270662-82270681 None:intergenic 20.0%
!! TACAGAAGTAAAAATATGAA+TGG - chr7_3:82270736-82270755 None:intergenic 20.0%
!!! TAATTAAGGATATTCTTTTC+TGG - chr7_3:82270782-82270801 None:intergenic 20.0%
!! AGAAAAGAAAATTAAAGGAA+TGG - chr7_3:82269175-82269194 None:intergenic 20.0%
!!! ATCATTCATTATAAGTTGAA+AGG - chr7_3:82269281-82269300 None:intergenic 20.0%
!!! TATGAAAACAAGTTTGTTAT+AGG - chr7_3:82269314-82269333 None:intergenic 20.0%
!!! ATTGTATGTGTTATTAGAAT+CGG - chr7_3:82269684-82269703 None:intergenic 20.0%
!!! GCTTTTTTAAATTCACTTAT+TGG + chr7_3:82270038-82270057 Msa1130150:intron 20.0%
!! AAAATAGAATTGTTTCAGAT+TGG - chr7_3:82270074-82270093 None:intergenic 20.0%
!! AGAAATTTACACATTTGTAT+TGG + chr7_3:82270217-82270236 Msa1130150:intron 20.0%
!! GAATTCTATTCTATATCAAA+GGG - chr7_3:82270618-82270637 None:intergenic 20.0%
!! CAATGAAATTGATTAATACA+AGG - chr7_3:82270662-82270681 None:intergenic 20.0%
!! TACAGAAGTAAAAATATGAA+TGG - chr7_3:82270736-82270755 None:intergenic 20.0%
!!! TAATTAAGGATATTCTTTTC+TGG - chr7_3:82270782-82270801 None:intergenic 20.0%
! GAATTTGTAGAGATAGATAA+TGG + chr7_3:82269000-82269019 Msa1130150:exon 25.0%
! TTCTTACCACAATTAATATG+AGG + chr7_3:82269196-82269215 Msa1130150:intron 25.0%
! AATCAACCTCATATTAATTG+TGG - chr7_3:82269205-82269224 None:intergenic 25.0%
! TCACTTACTTGAATTACTAT+TGG - chr7_3:82269735-82269754 None:intergenic 25.0%
! AATGTAATCACATACATCAT+TGG + chr7_3:82269763-82269782 Msa1130150:intron 25.0%
! ATGACGAATGTTTATGTATT+TGG - chr7_3:82270183-82270202 None:intergenic 25.0%
! TTGATTCTGATTGAAAAAAG+AGG - chr7_3:82270348-82270367 None:intergenic 25.0%
! AATATATTGTTTATGCCTTG+AGG - chr7_3:82270405-82270424 None:intergenic 25.0%
! GGAATTCTATTCTATATCAA+AGG - chr7_3:82270619-82270638 None:intergenic 25.0%
!!! GAATGTTTTGATACAAAAGA+AGG + chr7_3:82270826-82270845 Msa1130150:three_prime_UTR 25.0%
! GAATTTGTAGAGATAGATAA+TGG + chr7_3:82269000-82269019 Msa1130150:exon 25.0%
! TTCTTACCACAATTAATATG+AGG + chr7_3:82269196-82269215 Msa1130150:intron 25.0%
! AATCAACCTCATATTAATTG+TGG - chr7_3:82269205-82269224 None:intergenic 25.0%
! TCACTTACTTGAATTACTAT+TGG - chr7_3:82269735-82269754 None:intergenic 25.0%
! AATGTAATCACATACATCAT+TGG + chr7_3:82269763-82269782 Msa1130150:intron 25.0%
! ATGACGAATGTTTATGTATT+TGG - chr7_3:82270183-82270202 None:intergenic 25.0%
! TTGATTCTGATTGAAAAAAG+AGG - chr7_3:82270348-82270367 None:intergenic 25.0%
! AATATATTGTTTATGCCTTG+AGG - chr7_3:82270405-82270424 None:intergenic 25.0%
! GGAATTCTATTCTATATCAA+AGG - chr7_3:82270619-82270638 None:intergenic 25.0%
!!! GAATGTTTTGATACAAAAGA+AGG + chr7_3:82270826-82270845 Msa1130150:three_prime_UTR 25.0%
!! CGAATGTTTTTGTTTCTTTG+AGG - chr7_3:82268932-82268951 None:intergenic 30.0%
GAGCAAAAAAGAAAGAAAGA+AGG + chr7_3:82268978-82268997 Msa1130150:five_prime_UTR 30.0%
! TTTGTAGAGATAGATAATGG+CGG + chr7_3:82269003-82269022 Msa1130150:exon 30.0%
!! AGTTGTTGTTGTTTAAGGAA+GGG - chr7_3:82269142-82269161 None:intergenic 30.0%
!! AAGTTGTTGTTGTTTAAGGA+AGG - chr7_3:82269143-82269162 None:intergenic 30.0%
!! CTGAAAGTTGTTGTTGTTTA+AGG - chr7_3:82269147-82269166 None:intergenic 30.0%
CTTAAACAACAACAACTTTC+AGG + chr7_3:82269145-82269164 Msa1130150:CDS 30.0%
CAAATCAGTAAACAACTCAT+TGG - chr7_3:82269567-82269586 None:intergenic 30.0%
!! TGAGTTGTTTACTGATTTGA+AGG + chr7_3:82269568-82269587 Msa1130150:CDS 30.0%
!! GTTTACTGATTTGAAGGAAA+AGG + chr7_3:82269574-82269593 Msa1130150:CDS 30.0%
GAATCGGAAATGAAACATTA+TGG - chr7_3:82269668-82269687 None:intergenic 30.0%
TGATGTATGTGATTACATTC+AGG - chr7_3:82269762-82269781 None:intergenic 30.0%
ACATTAATGTTGTCAAAGAG+AGG - chr7_3:82269842-82269861 None:intergenic 30.0%
!! TACAGTTTTAGTAACCAAGT+AGG + chr7_3:82269866-82269885 Msa1130150:intron 30.0%
TGGAGTATATTATTCCTACT+TGG - chr7_3:82269883-82269902 None:intergenic 30.0%
! TGTTTCAGATTGGTTCAAAA+TGG - chr7_3:82270064-82270083 None:intergenic 30.0%
CAGCAACAAGAAAAAAACAA+TGG - chr7_3:82270373-82270392 None:intergenic 30.0%
AATACAGTTCTATTCAGTTC+CGG - chr7_3:82270513-82270532 None:intergenic 30.0%
AAACAAACAAATGATGAGCA+AGG - chr7_3:82270558-82270577 None:intergenic 30.0%
TGATATAGAATAGAATTCCC+CGG + chr7_3:82270620-82270639 Msa1130150:three_prime_UTR 30.0%
!! AGGTTGATATTTATAGAGAC+CGG - chr7_3:82270642-82270661 None:intergenic 30.0%
!! CGAATGTTTTTGTTTCTTTG+AGG - chr7_3:82268932-82268951 None:intergenic 30.0%
GAGCAAAAAAGAAAGAAAGA+AGG + chr7_3:82268978-82268997 Msa1130150:five_prime_UTR 30.0%
! TTTGTAGAGATAGATAATGG+CGG + chr7_3:82269003-82269022 Msa1130150:exon 30.0%
!! AGTTGTTGTTGTTTAAGGAA+GGG - chr7_3:82269142-82269161 None:intergenic 30.0%
!! AAGTTGTTGTTGTTTAAGGA+AGG - chr7_3:82269143-82269162 None:intergenic 30.0%
!! CTGAAAGTTGTTGTTGTTTA+AGG - chr7_3:82269147-82269166 None:intergenic 30.0%
CTTAAACAACAACAACTTTC+AGG + chr7_3:82269145-82269164 Msa1130150:CDS 30.0%
CAAATCAGTAAACAACTCAT+TGG - chr7_3:82269567-82269586 None:intergenic 30.0%
!! TGAGTTGTTTACTGATTTGA+AGG + chr7_3:82269568-82269587 Msa1130150:CDS 30.0%
!! GTTTACTGATTTGAAGGAAA+AGG + chr7_3:82269574-82269593 Msa1130150:CDS 30.0%
GAATCGGAAATGAAACATTA+TGG - chr7_3:82269668-82269687 None:intergenic 30.0%
TGATGTATGTGATTACATTC+AGG - chr7_3:82269762-82269781 None:intergenic 30.0%
ACATTAATGTTGTCAAAGAG+AGG - chr7_3:82269842-82269861 None:intergenic 30.0%
!! TACAGTTTTAGTAACCAAGT+AGG + chr7_3:82269866-82269885 Msa1130150:intron 30.0%
TGGAGTATATTATTCCTACT+TGG - chr7_3:82269883-82269902 None:intergenic 30.0%
! TGTTTCAGATTGGTTCAAAA+TGG - chr7_3:82270064-82270083 None:intergenic 30.0%
CAGCAACAAGAAAAAAACAA+TGG - chr7_3:82270373-82270392 None:intergenic 30.0%
AATACAGTTCTATTCAGTTC+CGG - chr7_3:82270513-82270532 None:intergenic 30.0%
AAACAAACAAATGATGAGCA+AGG - chr7_3:82270558-82270577 None:intergenic 30.0%
TGATATAGAATAGAATTCCC+CGG + chr7_3:82270620-82270639 Msa1130150:three_prime_UTR 30.0%
!! AGGTTGATATTTATAGAGAC+CGG - chr7_3:82270642-82270661 None:intergenic 30.0%
! TTATCCACTGTCATGTGTTT+TGG - chr7_3:82268882-82268901 None:intergenic 35.0%
!! TTGTTGTTGTTTAAGGAAGG+GGG - chr7_3:82269140-82269159 None:intergenic 35.0%
!! GTTGTTGTTGTTTAAGGAAG+GGG - chr7_3:82269141-82269160 None:intergenic 35.0%
! CTACAAACATCTGTAATGGA+AGG - chr7_3:82269230-82269249 None:intergenic 35.0%
TAAGCTGTTTATCCAAACAG+AGG - chr7_3:82269253-82269272 None:intergenic 35.0%
TCTGATGCAGAGAAAACTTA+CGG - chr7_3:82269502-82269521 None:intergenic 35.0%
TACTCCATTGTCATTATCAG+TGG + chr7_3:82269896-82269915 Msa1130150:intron 35.0%
ACTCCATTGTCATTATCAGT+GGG + chr7_3:82269897-82269916 Msa1130150:intron 35.0%
TGGTTATCTTCAATCCTTGT+TGG + chr7_3:82269979-82269998 Msa1130150:CDS 35.0%
GTTTCAGCTTCCAAAGATTA+TGG + chr7_3:82270096-82270115 Msa1130150:intron 35.0%
TTACCGATACCTTCTGTTTA+AGG + chr7_3:82270153-82270172 Msa1130150:CDS 35.0%
! CTACCTTAAACAGAAGGTAT+CGG - chr7_3:82270159-82270178 None:intergenic 35.0%
! CACATTTGTATTGGTGTTTC+TGG + chr7_3:82270226-82270245 Msa1130150:intron 35.0%
GTTTGTGAACTTTCTTGCAT+TGG + chr7_3:82270313-82270332 Msa1130150:intron 35.0%
TGAACTTTCTTGCATTGGAT+TGG + chr7_3:82270318-82270337 Msa1130150:intron 35.0%
GTTGATATTTATAGAGACCG+GGG - chr7_3:82270640-82270659 None:intergenic 35.0%
! GGTTGATATTTATAGAGACC+GGG - chr7_3:82270641-82270660 None:intergenic 35.0%
! TTATCCACTGTCATGTGTTT+TGG - chr7_3:82268882-82268901 None:intergenic 35.0%
!! TTGTTGTTGTTTAAGGAAGG+GGG - chr7_3:82269140-82269159 None:intergenic 35.0%
!! GTTGTTGTTGTTTAAGGAAG+GGG - chr7_3:82269141-82269160 None:intergenic 35.0%
! CTACAAACATCTGTAATGGA+AGG - chr7_3:82269230-82269249 None:intergenic 35.0%
TAAGCTGTTTATCCAAACAG+AGG - chr7_3:82269253-82269272 None:intergenic 35.0%
TCTGATGCAGAGAAAACTTA+CGG - chr7_3:82269502-82269521 None:intergenic 35.0%
TACTCCATTGTCATTATCAG+TGG + chr7_3:82269896-82269915 Msa1130150:intron 35.0%
ACTCCATTGTCATTATCAGT+GGG + chr7_3:82269897-82269916 Msa1130150:intron 35.0%
TGGTTATCTTCAATCCTTGT+TGG + chr7_3:82269979-82269998 Msa1130150:CDS 35.0%
GTTTCAGCTTCCAAAGATTA+TGG + chr7_3:82270096-82270115 Msa1130150:intron 35.0%
TTACCGATACCTTCTGTTTA+AGG + chr7_3:82270153-82270172 Msa1130150:CDS 35.0%
! CTACCTTAAACAGAAGGTAT+CGG - chr7_3:82270159-82270178 None:intergenic 35.0%
! CACATTTGTATTGGTGTTTC+TGG + chr7_3:82270226-82270245 Msa1130150:intron 35.0%
GTTTGTGAACTTTCTTGCAT+TGG + chr7_3:82270313-82270332 Msa1130150:intron 35.0%
TGAACTTTCTTGCATTGGAT+TGG + chr7_3:82270318-82270337 Msa1130150:intron 35.0%
GTTGATATTTATAGAGACCG+GGG - chr7_3:82270640-82270659 None:intergenic 35.0%
! GGTTGATATTTATAGAGACC+GGG - chr7_3:82270641-82270660 None:intergenic 35.0%
TGTTCCAAAACACATGACAG+TGG + chr7_3:82268875-82268894 Msa1130150:five_prime_UTR 40.0%
ATGACAGTGGATAACAAGCA+AGG + chr7_3:82268888-82268907 Msa1130150:five_prime_UTR 40.0%
TGACAGTGGATAACAAGCAA+GGG + chr7_3:82268889-82268908 Msa1130150:five_prime_UTR 40.0%
GAGGCTACAAACATCTGTAA+TGG - chr7_3:82269234-82269253 None:intergenic 40.0%
AGATGTTTGTAGCCTCTGTT+TGG + chr7_3:82269238-82269257 Msa1130150:intron 40.0%
GATAAGCTCAAATTGACGCT+AGG + chr7_3:82269396-82269415 Msa1130150:intron 40.0%
CTGATGCAGAGAAAACTTAC+GGG - chr7_3:82269501-82269520 None:intergenic 40.0%
! CATCCCACTGATAATGACAA+TGG - chr7_3:82269903-82269922 None:intergenic 40.0%
AAGTCCACAGTGCTTCTATA+TGG + chr7_3:82269934-82269953 Msa1130150:CDS 40.0%
GCTTCCAAAGATTATGGAGT+TGG + chr7_3:82270102-82270121 Msa1130150:intron 40.0%
CCTACCAACTCCATAATCTT+TGG - chr7_3:82270109-82270128 None:intergenic 40.0%
! CCAAAGATTATGGAGTTGGT+AGG + chr7_3:82270106-82270125 Msa1130150:CDS 40.0%
!! ATTATGGAGTTGGTAGGACT+AGG + chr7_3:82270112-82270131 Msa1130150:CDS 40.0%
!! TTATGGAGTTGGTAGGACTA+GGG + chr7_3:82270113-82270132 Msa1130150:CDS 40.0%
! GTATCGGTAAACAAACCATC+CGG - chr7_3:82270143-82270162 None:intergenic 40.0%
! CGATACCTTCTGTTTAAGGT+AGG + chr7_3:82270157-82270176 Msa1130150:intron 40.0%
TTTGGCCTACCTTAAACAGA+AGG - chr7_3:82270165-82270184 None:intergenic 40.0%
TAGCAGAAAGGAACTAGCTA+CGG + chr7_3:82270460-82270479 Msa1130150:CDS 40.0%
GCACTGAAGAAGAAAATTGC+CGG + chr7_3:82270491-82270510 Msa1130150:CDS 40.0%
ATGAGCAAGGAAGATCAACT+TGG - chr7_3:82270545-82270564 None:intergenic 40.0%
TGTTCCAAAACACATGACAG+TGG + chr7_3:82268875-82268894 Msa1130150:five_prime_UTR 40.0%
ATGACAGTGGATAACAAGCA+AGG + chr7_3:82268888-82268907 Msa1130150:five_prime_UTR 40.0%
TGACAGTGGATAACAAGCAA+GGG + chr7_3:82268889-82268908 Msa1130150:five_prime_UTR 40.0%
GAGGCTACAAACATCTGTAA+TGG - chr7_3:82269234-82269253 None:intergenic 40.0%
AGATGTTTGTAGCCTCTGTT+TGG + chr7_3:82269238-82269257 Msa1130150:intron 40.0%
GATAAGCTCAAATTGACGCT+AGG + chr7_3:82269396-82269415 Msa1130150:intron 40.0%
CTGATGCAGAGAAAACTTAC+GGG - chr7_3:82269501-82269520 None:intergenic 40.0%
! CATCCCACTGATAATGACAA+TGG - chr7_3:82269903-82269922 None:intergenic 40.0%
AAGTCCACAGTGCTTCTATA+TGG + chr7_3:82269934-82269953 Msa1130150:CDS 40.0%
GCTTCCAAAGATTATGGAGT+TGG + chr7_3:82270102-82270121 Msa1130150:intron 40.0%
CCTACCAACTCCATAATCTT+TGG - chr7_3:82270109-82270128 None:intergenic 40.0%
! CCAAAGATTATGGAGTTGGT+AGG + chr7_3:82270106-82270125 Msa1130150:CDS 40.0%
!! ATTATGGAGTTGGTAGGACT+AGG + chr7_3:82270112-82270131 Msa1130150:CDS 40.0%
!! TTATGGAGTTGGTAGGACTA+GGG + chr7_3:82270113-82270132 Msa1130150:CDS 40.0%
! GTATCGGTAAACAAACCATC+CGG - chr7_3:82270143-82270162 None:intergenic 40.0%
! CGATACCTTCTGTTTAAGGT+AGG + chr7_3:82270157-82270176 Msa1130150:intron 40.0%
TTTGGCCTACCTTAAACAGA+AGG - chr7_3:82270165-82270184 None:intergenic 40.0%
TAGCAGAAAGGAACTAGCTA+CGG + chr7_3:82270460-82270479 Msa1130150:CDS 40.0%
GCACTGAAGAAGAAAATTGC+CGG + chr7_3:82270491-82270510 Msa1130150:CDS 40.0%
ATGAGCAAGGAAGATCAACT+TGG - chr7_3:82270545-82270564 None:intergenic 40.0%
GTACAGTGTTAGTTCCTCCT+CGG + chr7_3:82269047-82269066 Msa1130150:CDS 45.0%
TTGTTTAAGGAAGGGGGAAG+TGG - chr7_3:82269134-82269153 None:intergenic 45.0%
TCCACAGTGCTTCTATATGG+TGG + chr7_3:82269937-82269956 Msa1130150:CDS 45.0%
!! ACCACCATATAGAAGCACTG+TGG - chr7_3:82269941-82269960 None:intergenic 45.0%
ACAGTGCTTCTATATGGTGG+TGG + chr7_3:82269940-82269959 Msa1130150:CDS 45.0%
! GTGGAGCTTTAGTTGCTGTT+TGG + chr7_3:82269959-82269978 Msa1130150:CDS 45.0%
AGCGAGTGATAGCTTACCAA+GGG - chr7_3:82270021-82270040 None:intergenic 45.0%
AAGCGAGTGATAGCTTACCA+AGG - chr7_3:82270022-82270041 None:intergenic 45.0%
TGTTTATGCCTTGAGGCATG+TGG - chr7_3:82270398-82270417 None:intergenic 45.0%
CTCTGTACAGTCTAGCAGAA+AGG + chr7_3:82270448-82270467 Msa1130150:intron 45.0%
GTACAGTGTTAGTTCCTCCT+CGG + chr7_3:82269047-82269066 Msa1130150:CDS 45.0%
TTGTTTAAGGAAGGGGGAAG+TGG - chr7_3:82269134-82269153 None:intergenic 45.0%
TCCACAGTGCTTCTATATGG+TGG + chr7_3:82269937-82269956 Msa1130150:CDS 45.0%
!! ACCACCATATAGAAGCACTG+TGG - chr7_3:82269941-82269960 None:intergenic 45.0%
ACAGTGCTTCTATATGGTGG+TGG + chr7_3:82269940-82269959 Msa1130150:CDS 45.0%
! GTGGAGCTTTAGTTGCTGTT+TGG + chr7_3:82269959-82269978 Msa1130150:CDS 45.0%
AGCGAGTGATAGCTTACCAA+GGG - chr7_3:82270021-82270040 None:intergenic 45.0%
AAGCGAGTGATAGCTTACCA+AGG - chr7_3:82270022-82270041 None:intergenic 45.0%
TGTTTATGCCTTGAGGCATG+TGG - chr7_3:82270398-82270417 None:intergenic 45.0%
CTCTGTACAGTCTAGCAGAA+AGG + chr7_3:82270448-82270467 Msa1130150:intron 45.0%
GTGGATAACAAGCAAGGGTG+TGG + chr7_3:82268894-82268913 Msa1130150:five_prime_UTR 50.0%
CAGCACTGTCACTGTCACAT+TGG + chr7_3:82269707-82269726 Msa1130150:intron 50.0%
!! GCACTGACACTTTAGCTTGC+CGG - chr7_3:82269815-82269834 None:intergenic 50.0%
!! CAGAGTTGATGGCACCAACA+AGG - chr7_3:82269996-82270015 None:intergenic 50.0%
TACCAAGGGGACAGAGTTGA+TGG - chr7_3:82270007-82270026 None:intergenic 50.0%
GCGAGTGATAGCTTACCAAG+GGG - chr7_3:82270020-82270039 None:intergenic 50.0%
TTGGTAGGACTAGGGTACAC+CGG + chr7_3:82270121-82270140 Msa1130150:CDS 50.0%
TTGCTGATCCACATGCCTCA+AGG + chr7_3:82270387-82270406 Msa1130150:intron 50.0%
GTGGATAACAAGCAAGGGTG+TGG + chr7_3:82268894-82268913 Msa1130150:five_prime_UTR 50.0%
CAGCACTGTCACTGTCACAT+TGG + chr7_3:82269707-82269726 Msa1130150:intron 50.0%
!! GCACTGACACTTTAGCTTGC+CGG - chr7_3:82269815-82269834 None:intergenic 50.0%
!! CAGAGTTGATGGCACCAACA+AGG - chr7_3:82269996-82270015 None:intergenic 50.0%
TACCAAGGGGACAGAGTTGA+TGG - chr7_3:82270007-82270026 None:intergenic 50.0%
GCGAGTGATAGCTTACCAAG+GGG - chr7_3:82270020-82270039 None:intergenic 50.0%
TTGGTAGGACTAGGGTACAC+CGG + chr7_3:82270121-82270140 Msa1130150:CDS 50.0%
TTGCTGATCCACATGCCTCA+AGG + chr7_3:82270387-82270406 Msa1130150:intron 50.0%
! TTGGTGGTTGTCAGTAGCCG+AGG - chr7_3:82269067-82269086 None:intergenic 55.0%
AGAGCAGCGAGTAACGTTGG+TGG - chr7_3:82269083-82269102 None:intergenic 55.0%
AGCAGAGCAGCGAGTAACGT+TGG - chr7_3:82269086-82269105 None:intergenic 55.0%
TAAGGAAGGGGGAAGTGGAG+TGG - chr7_3:82269129-82269148 None:intergenic 55.0%
!! CATTGGTGTCGTGTCAGTGC+CGG + chr7_3:82269780-82269799 Msa1130150:intron 55.0%
!! CACTTTAGCTTGCCGGCATC+CGG - chr7_3:82269808-82269827 None:intergenic 55.0%
TGCCATCAACTCTGTCCCCT+TGG + chr7_3:82270002-82270021 Msa1130150:CDS 55.0%
TAGGACTAGGGTACACCGGA+TGG + chr7_3:82270125-82270144 Msa1130150:CDS 55.0%
! TTGGTGGTTGTCAGTAGCCG+AGG - chr7_3:82269067-82269086 None:intergenic 55.0%
AGAGCAGCGAGTAACGTTGG+TGG - chr7_3:82269083-82269102 None:intergenic 55.0%
AGCAGAGCAGCGAGTAACGT+TGG - chr7_3:82269086-82269105 None:intergenic 55.0%
TAAGGAAGGGGGAAGTGGAG+TGG - chr7_3:82269129-82269148 None:intergenic 55.0%
!! CATTGGTGTCGTGTCAGTGC+CGG + chr7_3:82269780-82269799 Msa1130150:intron 55.0%
!! CACTTTAGCTTGCCGGCATC+CGG - chr7_3:82269808-82269827 None:intergenic 55.0%
TGCCATCAACTCTGTCCCCT+TGG + chr7_3:82270002-82270021 Msa1130150:CDS 55.0%
TAGGACTAGGGTACACCGGA+TGG + chr7_3:82270125-82270144 Msa1130150:CDS 55.0%
GTTGCAGCAGCAGCAAGTGC+AGG + chr7_3:82269025-82269044 Msa1130150:CDS 60.0%
GTGGTTGTCAGTAGCCGAGG+AGG - chr7_3:82269064-82269083 None:intergenic 60.0%
GAGTGGCGAGGAGGGAGAAA+AGG - chr7_3:82269112-82269131 None:intergenic 60.0%
GTTGCAGCAGCAGCAAGTGC+AGG + chr7_3:82269025-82269044 Msa1130150:CDS 60.0%
GTGGTTGTCAGTAGCCGAGG+AGG - chr7_3:82269064-82269083 None:intergenic 60.0%
GAGTGGCGAGGAGGGAGAAA+AGG - chr7_3:82269112-82269131 None:intergenic 60.0%
GGGAAGTGGAGTGGCGAGGA+GGG - chr7_3:82269120-82269139 None:intergenic 65.0%
AAGGGGGAAGTGGAGTGGCG+AGG - chr7_3:82269124-82269143 None:intergenic 65.0%
!! TGTCGTGTCAGTGCCGGTGC+CGG + chr7_3:82269786-82269805 Msa1130150:intron 65.0%
GGGAAGTGGAGTGGCGAGGA+GGG - chr7_3:82269120-82269139 None:intergenic 65.0%
AAGGGGGAAGTGGAGTGGCG+AGG - chr7_3:82269124-82269143 None:intergenic 65.0%
!! TGTCGTGTCAGTGCCGGTGC+CGG + chr7_3:82269786-82269805 Msa1130150:intron 65.0%
GGGGAAGTGGAGTGGCGAGG+AGG - chr7_3:82269121-82269140 None:intergenic 70.0%
!! TCAGTGCCGGTGCCGGATGC+CGG + chr7_3:82269793-82269812 Msa1130150:intron 70.0%
AGCTTGCCGGCATCCGGCAC+CGG - chr7_3:82269802-82269821 None:intergenic 70.0%
GGGGAAGTGGAGTGGCGAGG+AGG - chr7_3:82269121-82269140 None:intergenic 70.0%
!! TCAGTGCCGGTGCCGGATGC+CGG + chr7_3:82269793-82269812 Msa1130150:intron 70.0%
AGCTTGCCGGCATCCGGCAC+CGG - chr7_3:82269802-82269821 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82268872 82270853 82268872 ID=Msa1130150;Name=Msa1130150
chr7_3 mRNA 82268872 82270853 82268872 ID=Msa1130150-mRNA-1;Parent=Msa1130150;Name=Msa1130150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|5|330|164
chr7_3 exon 82268872 82269166 82268872 ID=Msa1130150-mRNA-1:exon:24155;Parent=Msa1130150-mRNA-1
chr7_3 exon 82269495 82269595 82269495 ID=Msa1130150-mRNA-1:exon:24156;Parent=Msa1130150-mRNA-1
chr7_3 exon 82269916 82270023 82269916 ID=Msa1130150-mRNA-1:exon:24157;Parent=Msa1130150-mRNA-1
chr7_3 exon 82270103 82270174 82270103 ID=Msa1130150-mRNA-1:exon:24158;Parent=Msa1130150-mRNA-1
chr7_3 exon 82270458 82270853 82270458 ID=Msa1130150-mRNA-1:exon:24159;Parent=Msa1130150-mRNA-1
chr7_3 five_prime_UTR 82268872 82269018 82268872 ID=Msa1130150-mRNA-1:five_prime_utr;Parent=Msa1130150-mRNA-1
chr7_3 CDS 82269019 82269166 82269019 ID=Msa1130150-mRNA-1:cds;Parent=Msa1130150-mRNA-1
chr7_3 CDS 82269495 82269595 82269495 ID=Msa1130150-mRNA-1:cds;Parent=Msa1130150-mRNA-1
chr7_3 CDS 82269916 82270023 82269916 ID=Msa1130150-mRNA-1:cds;Parent=Msa1130150-mRNA-1
chr7_3 CDS 82270103 82270174 82270103 ID=Msa1130150-mRNA-1:cds;Parent=Msa1130150-mRNA-1
chr7_3 CDS 82270458 82270523 82270458 ID=Msa1130150-mRNA-1:cds;Parent=Msa1130150-mRNA-1
chr7_3 three_prime_UTR 82270524 82270853 82270524 ID=Msa1130150-mRNA-1:three_prime_utr;Parent=Msa1130150-mRNA-1
Gene Sequence

>Msa1130150

ATGGCGGTTGCAGCAGCAGCAAGTGCAGGTACAGTGTTAGTTCCTCCTCGGCTACTGACAACCACCAACGTTACTCGCTGCTCTGCTTTGCCTTTTCTCCCTCCTCGCCACTCCACTTCCCCCTTCCTTAAACAACAACAACTTTCAGAGTCCCGTAAGTTTTCTCTGCATCAGACTAGAGCTTCTTCTTCAGAAGAAACATCTACTTCTCTTGATACCAATGAGTTGTTTACTGATTTGAAGGAAAAGTGGGATGCTGTTGAAAACAAGTCCACAGTGCTTCTATATGGTGGTGGAGCTTTAGTTGCTGTTTGGTTATCTTCAATCCTTGTTGGTGCCATCAACTCTGTCCCCTTGCTTCCAAAGATTATGGAGTTGGTAGGACTAGGGTACACCGGATGGTTTGTTTACCGATACCTTCTGTTTAAGTCTAGCAGAAAGGAACTAGCTACGGATATTGATGCACTGAAGAAGAAAATTGCCGGAACTGAATAG

Protein sequence

>Msa1130150

MAVAAAASAGTVLVPPRLLTTTNVTRCSALPFLPPRHSTSPFLKQQQLSESRKFSLHQTRASSSEETSTSLDTNELFTDLKEKWDAVENKSTVLLYGGGALVAVWLSSILVGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIDALKKKIAGTE*