AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266330 MtrunA17_Chr2g0331621 97.279 147 3 1 1 146 1 147 4.22e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266330 AT1G52230.1 79.452 146 29 1 1 146 1 145 2.19e-81 236
Msa0266330 AT3G16140.1 78.082 146 31 1 1 146 1 145 8.09e-80 232

Find 61 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCAAATCCAAGAATTTA+AGG 0.134528 2_2:+66841488 Msa0266330:CDS
GTGAAAGTACCTTAAATTCT+TGG 0.244082 2_2:-66841497 None:intergenic
CTTGCTGGCAGTTCCATTAC+TGG 0.265222 2_2:+66841433 Msa0266330:CDS
TATTAGAAACTTTCGGTATT+GGG 0.309147 2_2:+66843233 Msa0266330:three_prime_UTR
TACTTCAGTGCCACAGCTTC+AGG 0.317013 2_2:+66842761 Msa0266330:CDS
AAAAGTAAAACACATTGAAT+TGG 0.320664 2_2:-66842860 None:intergenic
TACTTTGATTTGGAGGATAT+TGG 0.323961 2_2:+66841822 Msa0266330:CDS
CAAGAGTGTGTACTTTGATT+TGG 0.336220 2_2:+66841812 Msa0266330:CDS
TAGTATGCAGCAATTTCATT+AGG 0.352262 2_2:+66843025 Msa0266330:three_prime_UTR
ATATTAGAAACTTTCGGTAT+TGG 0.353474 2_2:+66843232 Msa0266330:three_prime_UTR
TTGCCACGGGGACCGAGCTT+TGG 0.360365 2_2:-66842821 None:intergenic
CTCAATGTTAAGGGTCTTGC+TGG 0.365303 2_2:+66841418 Msa0266330:CDS
ATATGAAAATGAAGATAATA+AGG 0.379488 2_2:-66843154 None:intergenic
CTCACCATACAACCCTCTTC+AGG 0.381984 2_2:+66841887 Msa0266330:CDS
ACCAGCTGGTCTCAATGTTA+AGG 0.384673 2_2:+66841408 Msa0266330:CDS
CCACGGGGACCGAGCTTTGG+TGG 0.404075 2_2:-66842818 None:intergenic
TTAGGATGTTGGTCTTAATT+CGG 0.409293 2_2:+66843043 Msa0266330:three_prime_UTR
GGCTCTGTGGTAGCAAAGTA+TGG 0.420308 2_2:+66841786 Msa0266330:CDS
AGCTGTGGACCTTTCTTGAT+TGG 0.426964 2_2:-66842794 None:intergenic
CACTTGATATTAGAAACTTT+CGG 0.427007 2_2:+66843226 Msa0266330:three_prime_UTR
CAGCAATTTCATTAGGATGT+TGG 0.439676 2_2:+66843032 Msa0266330:three_prime_UTR
GATCAAAATGTGACATGCTT+TGG 0.444197 2_2:-66841313 None:intergenic
AAAGTAAAACACATTGAATT+GGG 0.446423 2_2:-66842859 None:intergenic
CCAGCTGGTCTCAATGTTAA+GGG 0.447321 2_2:+66841409 Msa0266330:CDS
GTGGAAAATAATAAACCATA+TGG 0.455212 2_2:+66841357 Msa0266330:exon
ACTGTATTAAGACTAGTAAT+AGG 0.455465 2_2:-66842965 None:intergenic
GAGTGTGTACTTTGATTTGG+AGG 0.467087 2_2:+66841815 Msa0266330:CDS
GAACGTATAAAACACATAAA+CGG 0.473990 2_2:-66843066 None:intergenic
AGCATCATCATATGATTCAA+TGG 0.483561 2_2:-66843318 None:intergenic
GAGGATATTGGCAACACTAC+AGG 0.483887 2_2:+66841834 Msa0266330:CDS
AATTCTTGGATTTGAAACTC+TGG 0.485960 2_2:-66841483 None:intergenic
CAAACCTGAAGAGGGTTGTA+TGG 0.501808 2_2:-66841891 None:intergenic
CAAGAGTTGAACCACCTCCT+AGG 0.515089 2_2:-66842736 None:intergenic
AATAATCCTCTCTTTGTGAA+TGG 0.515909 2_2:-66842698 None:intergenic
CCCTTAACATTGAGACCAGC+TGG 0.523582 2_2:-66841409 None:intergenic
AGGTAGCAAGGGAAGCCATA+TGG 0.523790 2_2:-66841372 None:intergenic
CCGAGCTTTGGTGGAAGCTG+TGG 0.524654 2_2:-66842809 None:intergenic
GACATTCTACCAATCAAGAA+AGG 0.540823 2_2:+66842785 Msa0266330:CDS
AGATAGCTTAGTTCCAGTAA+TGG 0.548416 2_2:-66841446 None:intergenic
AGCTGGTTGTACACAAGCTA+AGG 0.551993 2_2:-66841392 None:intergenic
GCAGCTCCATTCACAAAGAG+AGG 0.555627 2_2:+66842692 Msa0266330:CDS
TCCAGTAGACAAACCTGAAG+AGG 0.558714 2_2:-66841900 None:intergenic
ACAGGTCAGTGGGATTTGTA+CGG 0.573529 2_2:+66841852 Msa0266330:CDS
TTAGCTTGTGTACAACCAGC+TGG 0.579471 2_2:+66841394 Msa0266330:CDS
GTACACAAGCTAAGGTAGCA+AGG 0.579499 2_2:-66841384 None:intergenic
GATTTGAAACTCTGGCGAGA+GGG 0.583566 2_2:-66841475 None:intergenic
CCACAGCTTCCACCAAAGCT+CGG 0.583979 2_2:+66842809 Msa0266330:CDS
ACAAGAGGAAGAGAATTAAG+TGG 0.584597 2_2:+66841338 Msa0266330:five_prime_UTR
AACTAAATTAGATCTTGCCA+CGG 0.594009 2_2:-66842835 None:intergenic
TGGCAACACTACAGGTCAGT+GGG 0.596869 2_2:+66841842 Msa0266330:CDS
ACTAAATTAGATCTTGCCAC+GGG 0.597169 2_2:-66842834 None:intergenic
GGATTTGAAACTCTGGCGAG+AGG 0.599558 2_2:-66841476 None:intergenic
CCAGTAGACAAACCTGAAGA+GGG 0.614925 2_2:-66841899 None:intergenic
TACACAAGCTAAGGTAGCAA+GGG 0.622521 2_2:-66841383 None:intergenic
TGAAGAGGGTTGTATGGTGA+GGG 0.652580 2_2:-66841885 None:intergenic
AACTTGCAGGAGTGGCTCTG+TGG 0.654086 2_2:+66841773 Msa0266330:intron
CCACCAAAGCTCGGTCCCCG+TGG 0.657534 2_2:+66842818 Msa0266330:CDS
TTGGCAACACTACAGGTCAG+TGG 0.661910 2_2:+66841841 Msa0266330:CDS
TAGAATGTCACCTGAAGCTG+TGG 0.676047 2_2:-66842771 None:intergenic
CTGAAGAGGGTTGTATGGTG+AGG 0.677728 2_2:-66841886 None:intergenic
CTAAATTAGATCTTGCCACG+GGG 0.688209 2_2:-66842833 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACTTATCTAATCTAAAT+AGG - chr2_2:66841671-66841690 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr2_2:66842251-66842270 Msa0266330:intron 15.0%
!! TTTAATATGAGAATGATTTA+TGG + chr2_2:66842502-66842521 Msa0266330:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_2:66842553-66842572 None:intergenic 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_2:66842553-66842572 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr2_2:66843157-66843176 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr2_2:66843156-66843175 Msa0266330:three_prime_UTR 15.0%
!! ATAACTTATCTAATCTAAAT+AGG - chr2_2:66841671-66841690 None:intergenic 15.0%
!! TTATATTAAGTGTCTTTATA+AGG + chr2_2:66842251-66842270 Msa0266330:intron 15.0%
!! TTTAATATGAGAATGATTTA+TGG + chr2_2:66842502-66842521 Msa0266330:intron 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_2:66842553-66842572 None:intergenic 15.0%
!! ATCAAAGAAATCAATTAATT+TGG - chr2_2:66842553-66842572 None:intergenic 15.0%
!! ATATGAAAATGAAGATAATA+AGG - chr2_2:66843157-66843176 None:intergenic 15.0%
!!! TTATTATCTTCATTTTCATA+TGG + chr2_2:66843156-66843175 Msa0266330:three_prime_UTR 15.0%
!! CATTAGCGTAATAAAAAAAA+CGG - chr2_2:66841576-66841595 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr2_2:66842016-66842035 None:intergenic 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr2_2:66842368-66842387 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr2_2:66842427-66842446 Msa0266330:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG - chr2_2:66842862-66842881 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG - chr2_2:66842863-66842882 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG - chr2_2:66843281-66843300 None:intergenic 20.0%
!! CATTAGCGTAATAAAAAAAA+CGG - chr2_2:66841576-66841595 None:intergenic 20.0%
!! TAGATCAACAAAATAATCTA+TGG - chr2_2:66842016-66842035 None:intergenic 20.0%
!!! CTTCTTGTTTTCTTATAATA+AGG - chr2_2:66842368-66842387 None:intergenic 20.0%
!!! AAATGTAATTAGTTCTTCAT+TGG + chr2_2:66842427-66842446 Msa0266330:intron 20.0%
!! AAAGTAAAACACATTGAATT+GGG - chr2_2:66842862-66842881 None:intergenic 20.0%
!! AAAAGTAAAACACATTGAAT+TGG - chr2_2:66842863-66842882 None:intergenic 20.0%
!!! ATTTTGTAAAATGTTACTTC+AGG - chr2_2:66843281-66843300 None:intergenic 20.0%
! GTGGAAAATAATAAACCATA+TGG + chr2_2:66841357-66841376 Msa0266330:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr2_2:66841488-66841507 Msa0266330:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr2_2:66841760-66841779 Msa0266330:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr2_2:66842140-66842159 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr2_2:66842363-66842382 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr2_2:66842968-66842987 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr2_2:66843069-66843088 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr2_2:66843226-66843245 Msa0266330:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr2_2:66843232-66843251 Msa0266330:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr2_2:66843233-66843252 Msa0266330:three_prime_UTR 25.0%
! GTGGAAAATAATAAACCATA+TGG + chr2_2:66841357-66841376 Msa0266330:exon 25.0%
! GTTTCAAATCCAAGAATTTA+AGG + chr2_2:66841488-66841507 Msa0266330:CDS 25.0%
!!! ACATAACATAATTAACTTGC+AGG + chr2_2:66841760-66841779 Msa0266330:intron 25.0%
!!! CTTATTTTCATAAGTTTTCC+AGG - chr2_2:66842140-66842159 None:intergenic 25.0%
!! TGTTTTCTTATAATAAGGAC+TGG - chr2_2:66842363-66842382 None:intergenic 25.0%
! ACTGTATTAAGACTAGTAAT+AGG - chr2_2:66842968-66842987 None:intergenic 25.0%
! GAACGTATAAAACACATAAA+CGG - chr2_2:66843069-66843088 None:intergenic 25.0%
! CACTTGATATTAGAAACTTT+CGG + chr2_2:66843226-66843245 Msa0266330:three_prime_UTR 25.0%
! ATATTAGAAACTTTCGGTAT+TGG + chr2_2:66843232-66843251 Msa0266330:three_prime_UTR 25.0%
! TATTAGAAACTTTCGGTATT+GGG + chr2_2:66843233-66843252 Msa0266330:three_prime_UTR 25.0%
! AATTCTTGGATTTGAAACTC+TGG - chr2_2:66841486-66841505 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr2_2:66841500-66841519 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr2_2:66841822-66841841 Msa0266330:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr2_2:66841980-66841999 Msa0266330:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr2_2:66842245-66842264 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr2_2:66842246-66842265 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr2_2:66842701-66842720 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG - chr2_2:66842838-66842857 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr2_2:66843025-66843044 Msa0266330:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr2_2:66843043-66843062 Msa0266330:three_prime_UTR 30.0%
! AATTCTTGGATTTGAAACTC+TGG - chr2_2:66841486-66841505 None:intergenic 30.0%
!! GTGAAAGTACCTTAAATTCT+TGG - chr2_2:66841500-66841519 None:intergenic 30.0%
!! TACTTTGATTTGGAGGATAT+TGG + chr2_2:66841822-66841841 Msa0266330:CDS 30.0%
AGTGATGTTTATATGTGTCT+AGG + chr2_2:66841980-66841999 Msa0266330:intron 30.0%
GACACTTAATATAACACAGA+GGG - chr2_2:66842245-66842264 None:intergenic 30.0%
AGACACTTAATATAACACAG+AGG - chr2_2:66842246-66842265 None:intergenic 30.0%
AATAATCCTCTCTTTGTGAA+TGG - chr2_2:66842701-66842720 None:intergenic 30.0%
AACTAAATTAGATCTTGCCA+CGG - chr2_2:66842838-66842857 None:intergenic 30.0%
TAGTATGCAGCAATTTCATT+AGG + chr2_2:66843025-66843044 Msa0266330:three_prime_UTR 30.0%
!! TTAGGATGTTGGTCTTAATT+CGG + chr2_2:66843043-66843062 Msa0266330:three_prime_UTR 30.0%
GATCAAAATGTGACATGCTT+TGG - chr2_2:66841316-66841335 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr2_2:66841323-66841342 Msa0266330:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr2_2:66841338-66841357 Msa0266330:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr2_2:66841449-66841468 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr2_2:66841765-66841784 Msa0266330:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr2_2:66841812-66841831 Msa0266330:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr2_2:66841986-66842005 Msa0266330:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr2_2:66842220-66842239 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr2_2:66842719-66842738 Msa0266330:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr2_2:66842785-66842804 Msa0266330:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG - chr2_2:66842837-66842856 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr2_2:66843032-66843051 Msa0266330:three_prime_UTR 35.0%
GATCAAAATGTGACATGCTT+TGG - chr2_2:66841316-66841335 None:intergenic 35.0%
!! TCACATTTTGATCACACAAG+AGG + chr2_2:66841323-66841342 Msa0266330:five_prime_UTR 35.0%
ACAAGAGGAAGAGAATTAAG+TGG + chr2_2:66841338-66841357 Msa0266330:five_prime_UTR 35.0%
AGATAGCTTAGTTCCAGTAA+TGG - chr2_2:66841449-66841468 None:intergenic 35.0%
!! ACATAATTAACTTGCAGGAG+TGG + chr2_2:66841765-66841784 Msa0266330:intron 35.0%
! CAAGAGTGTGTACTTTGATT+TGG + chr2_2:66841812-66841831 Msa0266330:CDS 35.0%
GTTTATATGTGTCTAGGCTT+AGG + chr2_2:66841986-66842005 Msa0266330:intron 35.0%
TATAGTCTATAGGACAGCAA+AGG - chr2_2:66842220-66842239 None:intergenic 35.0%
! TTGCTCAAGTTTTTGATCCT+AGG + chr2_2:66842719-66842738 Msa0266330:CDS 35.0%
GACATTCTACCAATCAAGAA+AGG + chr2_2:66842785-66842804 Msa0266330:CDS 35.0%
ACTAAATTAGATCTTGCCAC+GGG - chr2_2:66842837-66842856 None:intergenic 35.0%
CAGCAATTTCATTAGGATGT+TGG + chr2_2:66843032-66843051 Msa0266330:three_prime_UTR 35.0%
TACACAAGCTAAGGTAGCAA+GGG - chr2_2:66841386-66841405 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr2_2:66841562-66841581 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr2_2:66841815-66841834 Msa0266330:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr2_2:66841990-66842009 Msa0266330:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr2_2:66842119-66842138 Msa0266330:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr2_2:66842230-66842249 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG - chr2_2:66842394-66842413 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr2_2:66842722-66842741 Msa0266330:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr2_2:66842725-66842744 Msa0266330:CDS 40.0%
CTAAATTAGATCTTGCCACG+GGG - chr2_2:66842836-66842855 None:intergenic 40.0%
TACACAAGCTAAGGTAGCAA+GGG - chr2_2:66841386-66841405 None:intergenic 40.0%
AAAAAACGGACAGACGAGTA+TGG - chr2_2:66841562-66841581 None:intergenic 40.0%
!! GAGTGTGTACTTTGATTTGG+AGG + chr2_2:66841815-66841834 Msa0266330:CDS 40.0%
ATATGTGTCTAGGCTTAGGA+AGG + chr2_2:66841990-66842009 Msa0266330:intron 40.0%
!! GCTGTTTCTATAAGCTAACC+TGG + chr2_2:66842119-66842138 Msa0266330:intron 40.0%
! ACAGAGGGAGTATAGTCTAT+AGG - chr2_2:66842230-66842249 None:intergenic 40.0%
CACTAGCTACTACTTTAGCA+AGG - chr2_2:66842394-66842413 None:intergenic 40.0%
! CTCAAGTTTTTGATCCTAGG+AGG + chr2_2:66842722-66842741 Msa0266330:CDS 40.0%
! AAGTTTTTGATCCTAGGAGG+TGG + chr2_2:66842725-66842744 Msa0266330:CDS 40.0%
CTAAATTAGATCTTGCCACG+GGG - chr2_2:66842836-66842855 None:intergenic 40.0%
GTACACAAGCTAAGGTAGCA+AGG - chr2_2:66841387-66841406 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr2_2:66841395-66841414 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr2_2:66841394-66841413 Msa0266330:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr2_2:66841408-66841427 Msa0266330:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr2_2:66841409-66841428 Msa0266330:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr2_2:66841418-66841437 Msa0266330:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr2_2:66841478-66841497 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr2_2:66841834-66841853 Msa0266330:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr2_2:66841852-66841871 Msa0266330:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr2_2:66841888-66841907 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr2_2:66841894-66841913 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr2_2:66841902-66841921 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr2_2:66841903-66841922 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr2_2:66842217-66842236 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr2_2:66842774-66842793 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr2_2:66842797-66842816 None:intergenic 45.0%
GTACACAAGCTAAGGTAGCA+AGG - chr2_2:66841387-66841406 None:intergenic 45.0%
AGCTGGTTGTACACAAGCTA+AGG - chr2_2:66841395-66841414 None:intergenic 45.0%
!! TTAGCTTGTGTACAACCAGC+TGG + chr2_2:66841394-66841413 Msa0266330:CDS 45.0%
! ACCAGCTGGTCTCAATGTTA+AGG + chr2_2:66841408-66841427 Msa0266330:CDS 45.0%
! CCAGCTGGTCTCAATGTTAA+GGG + chr2_2:66841409-66841428 Msa0266330:CDS 45.0%
CTCAATGTTAAGGGTCTTGC+TGG + chr2_2:66841418-66841437 Msa0266330:CDS 45.0%
! GATTTGAAACTCTGGCGAGA+GGG - chr2_2:66841478-66841497 None:intergenic 45.0%
GAGGATATTGGCAACACTAC+AGG + chr2_2:66841834-66841853 Msa0266330:CDS 45.0%
ACAGGTCAGTGGGATTTGTA+CGG + chr2_2:66841852-66841871 Msa0266330:CDS 45.0%
TGAAGAGGGTTGTATGGTGA+GGG - chr2_2:66841888-66841907 None:intergenic 45.0%
CAAACCTGAAGAGGGTTGTA+TGG - chr2_2:66841894-66841913 None:intergenic 45.0%
CCAGTAGACAAACCTGAAGA+GGG - chr2_2:66841902-66841921 None:intergenic 45.0%
TCCAGTAGACAAACCTGAAG+AGG - chr2_2:66841903-66841922 None:intergenic 45.0%
AGTCTATAGGACAGCAAAGG+AGG - chr2_2:66842217-66842236 None:intergenic 45.0%
TAGAATGTCACCTGAAGCTG+TGG - chr2_2:66842774-66842793 None:intergenic 45.0%
AGCTGTGGACCTTTCTTGAT+TGG - chr2_2:66842797-66842816 None:intergenic 45.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr2_2:66841375-66841394 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr2_2:66841412-66841431 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr2_2:66841433-66841452 Msa0266330:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr2_2:66841479-66841498 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr2_2:66841786-66841805 Msa0266330:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr2_2:66841841-66841860 Msa0266330:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr2_2:66841842-66841861 Msa0266330:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr2_2:66841889-66841908 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr2_2:66841887-66841906 Msa0266330:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr2_2:66841899-66841918 Msa0266330:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr2_2:66842692-66842711 Msa0266330:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr2_2:66842739-66842758 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr2_2:66842761-66842780 Msa0266330:CDS 50.0%
AGGTAGCAAGGGAAGCCATA+TGG - chr2_2:66841375-66841394 None:intergenic 50.0%
CCCTTAACATTGAGACCAGC+TGG - chr2_2:66841412-66841431 None:intergenic 50.0%
CTTGCTGGCAGTTCCATTAC+TGG + chr2_2:66841433-66841452 Msa0266330:CDS 50.0%
! GGATTTGAAACTCTGGCGAG+AGG - chr2_2:66841479-66841498 None:intergenic 50.0%
GGCTCTGTGGTAGCAAAGTA+TGG + chr2_2:66841786-66841805 Msa0266330:CDS 50.0%
TTGGCAACACTACAGGTCAG+TGG + chr2_2:66841841-66841860 Msa0266330:CDS 50.0%
TGGCAACACTACAGGTCAGT+GGG + chr2_2:66841842-66841861 Msa0266330:CDS 50.0%
CTGAAGAGGGTTGTATGGTG+AGG - chr2_2:66841889-66841908 None:intergenic 50.0%
CTCACCATACAACCCTCTTC+AGG + chr2_2:66841887-66841906 Msa0266330:CDS 50.0%
! CCCTCTTCAGGTTTGTCTAC+TGG + chr2_2:66841899-66841918 Msa0266330:intron 50.0%
GCAGCTCCATTCACAAAGAG+AGG + chr2_2:66842692-66842711 Msa0266330:CDS 50.0%
CAAGAGTTGAACCACCTCCT+AGG - chr2_2:66842739-66842758 None:intergenic 50.0%
TACTTCAGTGCCACAGCTTC+AGG + chr2_2:66842761-66842780 Msa0266330:CDS 50.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr2_2:66841773-66841792 Msa0266330:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr2_2:66842809-66842828 Msa0266330:CDS 55.0%
! AACTTGCAGGAGTGGCTCTG+TGG + chr2_2:66841773-66841792 Msa0266330:intron 55.0%
CCACAGCTTCCACCAAAGCT+CGG + chr2_2:66842809-66842828 Msa0266330:CDS 55.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr2_2:66842812-66842831 None:intergenic 60.0%
! CCGAGCTTTGGTGGAAGCTG+TGG - chr2_2:66842812-66842831 None:intergenic 60.0%
TTGCCACGGGGACCGAGCTT+TGG - chr2_2:66842824-66842843 None:intergenic 65.0%
TTGCCACGGGGACCGAGCTT+TGG - chr2_2:66842824-66842843 None:intergenic 65.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr2_2:66842821-66842840 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr2_2:66842818-66842837 Msa0266330:CDS 70.0%
! CCACGGGGACCGAGCTTTGG+TGG - chr2_2:66842821-66842840 None:intergenic 70.0%
CCACCAAAGCTCGGTCCCCG+TGG + chr2_2:66842818-66842837 Msa0266330:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 66841309 66843329 66841309 ID=Msa0266330;Name=Msa0266330
chr2_2 mRNA 66841309 66843329 66841309 ID=Msa0266330-mRNA-1;Parent=Msa0266330;Name=Msa0266330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=67|1|1|1|1|1|3|479|146
chr2_2 exon 66841309 66841509 66841309 ID=Msa0266330-mRNA-1:exon:21246;Parent=Msa0266330-mRNA-1
chr2_2 exon 66841782 66841908 66841782 ID=Msa0266330-mRNA-1:exon:21247;Parent=Msa0266330-mRNA-1
chr2_2 exon 66842671 66843329 66842671 ID=Msa0266330-mRNA-1:exon:21248;Parent=Msa0266330-mRNA-1
chr2_2 five_prime_UTR 66841309 66841375 66841309 ID=Msa0266330-mRNA-1:five_prime_utr;Parent=Msa0266330-mRNA-1
chr2_2 CDS 66841376 66841509 66841376 ID=Msa0266330-mRNA-1:cds;Parent=Msa0266330-mRNA-1
chr2_2 CDS 66841782 66841908 66841782 ID=Msa0266330-mRNA-1:cds;Parent=Msa0266330-mRNA-1
chr2_2 CDS 66842671 66842850 66842671 ID=Msa0266330-mRNA-1:cds;Parent=Msa0266330-mRNA-1
chr2_2 three_prime_UTR 66842851 66843329 66842851 ID=Msa0266330-mRNA-1:three_prime_utr;Parent=Msa0266330-mRNA-1
Gene Sequence

>Msa0266330

ATGGCTTCCCTTGCTACCTTAGCTTGTGTACAACCAGCTGGTCTCAATGTTAAGGGTCTTGCTGGCAGTTCCATTACTGGAACTAAGCTATCTTTCAAGCCCTCTCGCCAGAGTTTCAAATCCAAGAATTTAAGGAGTGGCTCTGTGGTAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATATTGGCAACACTACAGGTCAGTGGGATTTGTACGGCTCAGATGCACCCTCACCATACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACAAAGAGAGGATTATTGCTCAAGTTTTTGATCCTAGGAGGTGGTTCAACTCTTGCATACTTCAGTGCCACAGCTTCAGGTGACATTCTACCAATCAAGAAAGGTCCACAGCTTCCACCAAAGCTCGGTCCCCGTGGCAAGATCTAA

Protein sequence

>Msa0266330

MASLATLACVQPAGLNVKGLAGSSITGTKLSFKPSRQSFKSKNLRSGSVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI*