AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0293060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293060 MtrunA17_Chr2g0313871 99.287 421 3 0 1 421 1 421 0.0 860
Msa0293060 MtrunA17_Chr4g0053631 36.410 390 214 8 39 401 9 391 1.72e-76 243
Msa0293060 MtrunA17_Chr8g0373601 37.349 249 136 7 113 348 92 333 3.25e-35 134
Msa0293060 MtrunA17_Chr5g0403581 37.008 254 142 6 113 354 91 338 1.06e-34 132
Msa0293060 MtrunA17_Chr8g0375771 25.541 231 149 8 110 330 171 388 3.17e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0293060 AT1G78510.1 66.746 421 122 5 2 420 1 405 0.0 544
Msa0293060 AT1G17050.1 72.951 366 97 1 55 420 53 416 0.0 544
Msa0293060 AT1G78510.2 78.743 334 71 0 87 420 33 366 0.0 540
Msa0293060 AT2G34630.2 39.809 314 176 3 103 403 85 398 1.52e-72 234
Msa0293060 AT2G34630.1 40.067 297 165 3 120 403 1 297 3.99e-69 222
Msa0293060 AT4G36810.1 41.176 255 126 9 111 348 85 332 4.08e-38 142
Msa0293060 AT2G18620.1 40.152 264 137 9 113 362 66 322 3.96e-36 135
Msa0293060 AT2G18640.1 38.000 250 137 7 111 348 90 333 2.25e-34 132
Msa0293060 AT3G14510.1 39.331 239 125 6 138 362 27 259 3.57e-33 126
Msa0293060 AT3G20160.1 35.827 254 140 8 111 348 59 305 1.65e-31 123
Msa0293060 AT3G32040.1 35.955 267 150 7 111 362 75 335 3.74e-29 117
Msa0293060 AT2G23800.1 35.857 251 141 9 111 348 94 337 1.95e-28 115
Msa0293060 AT3G29430.1 35.955 267 150 7 111 362 72 332 1.05e-27 113
Msa0293060 AT3G14550.3 35.955 267 150 8 111 362 75 335 2.09e-27 112
Msa0293060 AT3G14550.1 35.955 267 150 8 111 362 75 335 2.09e-27 112
Msa0293060 AT3G14550.2 35.955 267 150 8 111 362 75 335 2.09e-27 112
Msa0293060 AT3G14530.1 36.330 267 149 8 111 362 75 335 4.94e-27 111
Msa0293060 AT3G20160.2 33.603 247 127 8 111 348 59 277 1.41e-26 109
Msa0293060 AT1G49530.1 32.444 225 130 6 139 347 78 296 1.83e-22 97.8

Find 92 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAACCTATTCGGTGAAAT+AGG 0.205067 2_3:-42973688 None:intergenic
TCAATATCGTGTTTCTTCTA+TGG 0.220495 2_3:+42972880 Msa0293060:CDS
GAGACCGGCTCTTGTGTTCT+TGG 0.257479 2_3:+42974290 Msa0293060:CDS
CCAGATCCAAGAAAATAAAA+TGG 0.265102 2_3:-42976230 None:intergenic
TTGATCGCTGCCAGTGTAAA+AGG 0.286753 2_3:+42975572 Msa0293060:CDS
CTTCACACTTCTTCCTTCAA+TGG 0.290561 2_3:+42972609 Msa0293060:five_prime_UTR
ACAACCTATTCGGTGAAATA+GGG 0.302959 2_3:-42973687 None:intergenic
ACACTAGCTTACCTCTTCTT+AGG 0.303762 2_3:-42974574 None:intergenic
TGGAAATGGAGCTCGTAAAT+TGG 0.324226 2_3:+42972832 Msa0293060:CDS
CCAAGTTGTCGATGACATAT+TGG 0.335089 2_3:+42975673 Msa0293060:CDS
GAAACTGTTCATCAAATGTT+TGG 0.338601 2_3:+42975039 Msa0293060:CDS
TAAGATCATAAATACAATAA+TGG 0.369450 2_3:-42976182 None:intergenic
TTCGGTGAAATAGGGGTTGC+TGG 0.399015 2_3:-42973679 None:intergenic
CAGATCCAAGAAAATAAAAT+GGG 0.409484 2_3:-42976229 None:intergenic
CTCTTGTGTTCTTGGTGTCA+AGG 0.413478 2_3:+42974298 Msa0293060:CDS
CCAATATGTCATCGACAACT+TGG 0.424189 2_3:-42975673 None:intergenic
TTGGCGAGGTCCGTGCCTGC+AGG 0.424775 2_3:-42975728 None:intergenic
AATTCTAAAGGGTGTGGAAA+TGG 0.428535 2_3:+42972818 Msa0293060:CDS
GAAGGTGTTGATGGATTTGT+TGG 0.430526 2_3:-42976089 None:intergenic
GAGTCTGAATTTAGCGAGAT+TGG 0.432083 2_3:+42975815 Msa0293060:CDS
AGGAGCGGTGAGGTTACCTT+TGG 0.445911 2_3:-42975747 None:intergenic
CAACCCCTATTTCACCGAAT+AGG 0.446689 2_3:+42973683 Msa0293060:CDS
GCACAAAGGGAAGGTGTTGA+TGG 0.450868 2_3:-42976098 None:intergenic
TCAGCTGCAGATATTAAAAC+TGG 0.453325 2_3:-42974237 None:intergenic
TATGCTAAGGTGAATTCTAA+AGG 0.455161 2_3:+42972806 Msa0293060:CDS
CATATTGGATTTCACACAAT+CGG 0.461342 2_3:+42975688 Msa0293060:CDS
AAATGAAGAAGCAAGTTAAG+AGG 0.464736 2_3:-42972650 None:intergenic
ACTACTTCAAACAACCTATT+CGG 0.464935 2_3:-42973697 None:intergenic
ACCGAGAAAATGTTCGAATA+CGG 0.464949 2_3:+42975629 Msa0293060:CDS
AGAAGCAAGTTAAGAGGGTG+GGG 0.476577 2_3:-42972644 None:intergenic
TCTTGTGTTCTTGGTGTCAA+GGG 0.480305 2_3:+42974299 Msa0293060:CDS
TGAAGGAAGAAGTGTGAAGA+AGG 0.486860 2_3:-42972605 None:intergenic
TCAAGCTGGTGAAGAGTTGT+GGG 0.493089 2_3:+42975855 Msa0293060:CDS
ACAAGAGTGGCAGTGCTGGC+TGG 0.494391 2_3:+42975063 Msa0293060:CDS
TTTCTTGGATCTGGTTGTAA+GGG 0.496646 2_3:+42976239 Msa0293060:three_prime_UTR
AAGAAGCAAGTTAAGAGGGT+GGG 0.496786 2_3:-42972645 None:intergenic
TTCGAATACGGGAAGAATCT+CGG 0.498347 2_3:+42975641 Msa0293060:CDS
ATGCTAAGGTGAATTCTAAA+GGG 0.500417 2_3:+42972807 Msa0293060:CDS
TGGAACAAGAGTGGCAGTGC+TGG 0.503897 2_3:+42975059 Msa0293060:CDS
GCAATCAAAGACCTTGCAAA+AGG 0.504508 2_3:+42973637 Msa0293060:CDS
ATCAAGCTGGTGAAGAGTTG+TGG 0.504884 2_3:+42975854 Msa0293060:CDS
ATTGAGTGTTTGAAGATCAT+CGG 0.505570 2_3:-42973722 None:intergenic
ACTTGGAAAGCCTGCAGGCA+CGG 0.508298 2_3:+42975718 Msa0293060:CDS
ACACAATCGGCAGAGCAACT+TGG 0.509699 2_3:+42975701 Msa0293060:CDS
AATTGGTTTGTTGTAAGAAG+AGG 0.509786 2_3:+42972849 Msa0293060:CDS
TCAATGATATCCCTCAACTT+TGG 0.509971 2_3:-42975794 None:intergenic
TCTTTAGTGCTGGTGGGAAG+AGG 0.511599 2_3:+42974265 Msa0293060:CDS
ACTGCAGAGCCTACTTTGAA+TGG 0.516676 2_3:+42972905 Msa0293060:CDS
GAGCAACTTGGAAAGCCTGC+AGG 0.520485 2_3:+42975713 Msa0293060:CDS
TCATGTTTGCACAATCATCA+TGG 0.521316 2_3:+42975091 Msa0293060:CDS
ATGCCTATGAAAAGAAGCAT+TGG 0.522548 2_3:-42972771 None:intergenic
GTTTAAATAGCAACCATTGA+AGG 0.524468 2_3:-42972622 None:intergenic
GGATGCTCTTGATAGATTGT+AGG 0.526067 2_3:+42974204 Msa0293060:intron
GAAGGAAGAAGTGTGAAGAA+GGG 0.526723 2_3:-42972604 None:intergenic
CCGAGAAAATGTTCGAATAC+GGG 0.527115 2_3:+42975630 Msa0293060:CDS
GCTAATCGATACACACTTGG+AGG 0.531466 2_3:-42975947 None:intergenic
AAGGAAGAAGTGTGAAGAAG+GGG 0.538563 2_3:-42972603 None:intergenic
AGTCATTAAACTTATCAGCC+AGG 0.539916 2_3:+42975140 Msa0293060:CDS
AAGGTGAATTCTAAAGGGTG+TGG 0.545230 2_3:+42972812 Msa0293060:CDS
AATGAAGAAGCAAGTTAAGA+GGG 0.547928 2_3:-42972649 None:intergenic
CAACCTATTCGGTGAAATAG+GGG 0.554963 2_3:-42973686 None:intergenic
TCGATTAGCTCTCGAGGACA+TGG 0.556518 2_3:+42975961 Msa0293060:CDS
GCTGAGCAGATCTTTAGTGC+TGG 0.564731 2_3:+42974255 Msa0293060:CDS
GACACCAAGAACACAAGAGC+CGG 0.565484 2_3:-42974294 None:intergenic
AGGGCGACCGCAGAGCTACA+TGG 0.569025 2_3:+42974318 Msa0293060:CDS
GAGCAGATCTTTAGTGCTGG+TGG 0.569958 2_3:+42974258 Msa0293060:CDS
AGCAGATCTTTAGTGCTGGT+GGG 0.574274 2_3:+42974259 Msa0293060:CDS
GATGAGAGTGACCTAAGAAG+AGG 0.576816 2_3:+42974563 Msa0293060:CDS
GACAATTCACAAAACCCAGA+TGG 0.580200 2_3:-42972674 None:intergenic
TGGTGACATATAATCTTCAA+AGG 0.582035 2_3:+42975981 Msa0293060:CDS
AATCGAAAGAGCACAAGAGT+TGG 0.582560 2_3:+42975880 Msa0293060:CDS
TATGTCATCGACAACTTGGA+AGG 0.583738 2_3:-42975669 None:intergenic
GCAGGCACGGACCTCGCCAA+AGG 0.584554 2_3:+42975731 Msa0293060:CDS
TGAAGTTAAGAATTATGCTA+AGG 0.586221 2_3:+42972793 Msa0293060:CDS
ATCCTTCAATGTCTATACAC+TGG 0.592925 2_3:-42976135 None:intergenic
CGGTGAGGTTACCTTTGGCG+AGG 0.597280 2_3:-42975742 None:intergenic
GAAGAAGCAAGTTAAGAGGG+TGG 0.597821 2_3:-42972646 None:intergenic
TACCAGTGTATAGACATTGA+AGG 0.605637 2_3:+42976133 Msa0293060:three_prime_UTR
AGGAAGAAGTGTGAAGAAGG+GGG 0.605917 2_3:-42972602 None:intergenic
TCAAATGTTTGGAACAAGAG+TGG 0.606800 2_3:+42975050 Msa0293060:CDS
TGGTGGGAAGAGGATGAGAC+CGG 0.611153 2_3:+42974275 Msa0293060:CDS
ATCACTGTACCATTCAAAGT+AGG 0.612430 2_3:-42972914 None:intergenic
AGAGCTAATCGATACACACT+TGG 0.614529 2_3:-42975950 None:intergenic
TCTTGACGAAGCAATCAAGC+TGG 0.616222 2_3:+42975841 Msa0293060:CDS
TGTGTATCGATTAGCTCTCG+AGG 0.640172 2_3:+42975955 Msa0293060:CDS
AAGCTGGTGAAGAGTTGTGG+GGG 0.651000 2_3:+42975857 Msa0293060:CDS
CAACGCGAAAATTACAGGAG+CGG 0.661387 2_3:-42975762 None:intergenic
CGAAAATTACAGGAGCGGTG+AGG 0.666110 2_3:-42975757 None:intergenic
CTCAAGGCCATGTAGCTCTG+CGG 0.684430 2_3:-42974325 None:intergenic
CAAGCTGGTGAAGAGTTGTG+GGG 0.689413 2_3:+42975856 Msa0293060:CDS
AGATCCAAGAAAATAAAATG+GGG 0.695397 2_3:-42976228 None:intergenic
TACACTGGCAGCGATCAAGG+AGG 0.706136 2_3:-42975567 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAAAAAATCAATTTTTT+CGG + chr2_3:42975354-42975373 Msa0293060:intron 10.0%
!!! TTTCTTTTTCAAATTAGTAT+TGG + chr2_3:42973469-42973488 Msa0293060:intron 15.0%
!! TGATCAAATAAATTATAACA+TGG - chr2_3:42974718-42974737 None:intergenic 15.0%
!!! TTTTATTTTTGCAAAACTTT+TGG + chr2_3:42975431-42975450 Msa0293060:intron 15.0%
!! TAAGATCATAAATACAATAA+TGG - chr2_3:42976185-42976204 None:intergenic 15.0%
!!! AAAAAAAGGGTTCTTTTTAT+GGG - chr2_3:42972547-42972566 None:intergenic 20.0%
!!! TGATTTTTTTGGTAAAAACT+TGG + chr2_3:42972730-42972749 Msa0293060:CDS 20.0%
!!! ATTGTTCATTGATTTTAAAC+AGG + chr2_3:42973903-42973922 Msa0293060:intron 20.0%
!! TGATGTCAAAAATATTAAAC+AGG - chr2_3:42974609-42974628 None:intergenic 20.0%
!!! AACTTTGTTATAATCTGAAA+TGG + chr2_3:42974772-42974791 Msa0293060:intron 20.0%
!! TTGGTATATACATTCATAAA+AGG + chr2_3:42974890-42974909 Msa0293060:intron 20.0%
!!! TAACTTGCTTTGAATTAATA+GGG + chr2_3:42975013-42975032 Msa0293060:intron 20.0%
!! AATATGAAAGAACATATGTT+AGG + chr2_3:42975253-42975272 Msa0293060:intron 20.0%
!! AATAATTGATATCCATGTAA+GGG - chr2_3:42975289-42975308 None:intergenic 20.0%
!! AAATAATTGATATCCATGTA+AGG - chr2_3:42975290-42975309 None:intergenic 20.0%
!! ATGGATATCAATTATTTCAA+GGG + chr2_3:42975293-42975312 Msa0293060:intron 20.0%
!! GAAAAAAAGGGTTCTTTTTA+TGG - chr2_3:42972548-42972567 None:intergenic 25.0%
!!! AGCAAAAGCATTGATTTTTT+TGG + chr2_3:42972719-42972738 Msa0293060:CDS 25.0%
! TGAAGTTAAGAATTATGCTA+AGG + chr2_3:42972793-42972812 Msa0293060:CDS 25.0%
!! TAATAATTTGAAGTGTGTTG+TGG + chr2_3:42972954-42972973 Msa0293060:intron 25.0%
!! TTCATTTTGTATGTACTATG+TGG + chr2_3:42973114-42973133 Msa0293060:intron 25.0%
! TCTGACAATTCTAATATTGT+CGG - chr2_3:42973286-42973305 None:intergenic 25.0%
! TGAATTTAGAAGTAGAACTT+TGG + chr2_3:42973572-42973591 Msa0293060:intron 25.0%
!!! ATTTGGTTTGGTTTTTGAAT+AGG + chr2_3:42973604-42973623 Msa0293060:intron 25.0%
! CATCAGTTAAACTAACATAT+AGG - chr2_3:42974183-42974202 None:intergenic 25.0%
!! ATATGTTAGTTTAACTGATG+AGG + chr2_3:42974183-42974202 Msa0293060:intron 25.0%
!!! GGTTGTTTTGATTTTAATCT+TGG + chr2_3:42974688-42974707 Msa0293060:intron 25.0%
! TCAGATTATAACAAAGTTTC+AGG - chr2_3:42974770-42974789 None:intergenic 25.0%
! TAGATGGAAAAGAAAAAACA+AGG - chr2_3:42974947-42974966 None:intergenic 25.0%
!!! CTAACTTGCTTTGAATTAAT+AGG + chr2_3:42975012-42975031 Msa0293060:intron 25.0%
!! TAATGACTTCAATGTTTTCA+AGG - chr2_3:42975128-42975147 None:intergenic 25.0%
!! TTTTCAAAGCTGTATAATGA+TGG - chr2_3:42975172-42975191 None:intergenic 25.0%
! ATATGTTCTTTCATATTCAC+CGG - chr2_3:42975250-42975269 None:intergenic 25.0%
! ATAATTGATATCCATGTAAG+GGG - chr2_3:42975288-42975307 None:intergenic 25.0%
! CATGGATATCAATTATTTCA+AGG + chr2_3:42975292-42975311 Msa0293060:intron 25.0%
! TATCAATTATTTCAAGGGAT+TGG + chr2_3:42975298-42975317 Msa0293060:intron 25.0%
! ATCAATTATTTCAAGGGATT+GGG + chr2_3:42975299-42975318 Msa0293060:intron 25.0%
!!! TTTTCCCCATTTTATTTTCT+TGG + chr2_3:42976224-42976243 Msa0293060:three_prime_UTR 25.0%
! AGATCCAAGAAAATAAAATG+GGG - chr2_3:42976231-42976250 None:intergenic 25.0%
! CAGATCCAAGAAAATAAAAT+GGG - chr2_3:42976232-42976251 None:intergenic 25.0%
! GAAGAGTACACAGAAAAAAA+GGG - chr2_3:42972560-42972579 None:intergenic 30.0%
! AGAAGAGTACACAGAAAAAA+AGG - chr2_3:42972561-42972580 None:intergenic 30.0%
GTTTAAATAGCAACCATTGA+AGG - chr2_3:42972625-42972644 None:intergenic 30.0%
AATGAAGAAGCAAGTTAAGA+GGG - chr2_3:42972652-42972671 None:intergenic 30.0%
AAATGAAGAAGCAAGTTAAG+AGG - chr2_3:42972653-42972672 None:intergenic 30.0%
TATGCTAAGGTGAATTCTAA+AGG + chr2_3:42972806-42972825 Msa0293060:CDS 30.0%
ATGCTAAGGTGAATTCTAAA+GGG + chr2_3:42972807-42972826 Msa0293060:CDS 30.0%
!! AATTGGTTTGTTGTAAGAAG+AGG + chr2_3:42972849-42972868 Msa0293060:CDS 30.0%
TCAATATCGTGTTTCTTCTA+TGG + chr2_3:42972880-42972899 Msa0293060:CDS 30.0%
! TATCTTATTGAAAGTGTGTC+TGG + chr2_3:42973028-42973047 Msa0293060:intron 30.0%
GTATCAGAATTATCTGATAC+CGG + chr2_3:42973060-42973079 Msa0293060:intron 30.0%
TGTAATACTGATACTTCTGA+TGG + chr2_3:42973361-42973380 Msa0293060:intron 30.0%
TCTGTCAATTCTAATACTGT+TGG - chr2_3:42973403-42973422 None:intergenic 30.0%
GATTGAATGTTACATGTGTT+TGG - chr2_3:42973438-42973457 None:intergenic 30.0%
! AACTTTGGCATTGAAAGATT+TGG + chr2_3:42973587-42973606 Msa0293060:intron 30.0%
ACTACTTCAAACAACCTATT+CGG - chr2_3:42973700-42973719 None:intergenic 30.0%
ATTGAGTGTTTGAAGATCAT+CGG - chr2_3:42973725-42973744 None:intergenic 30.0%
TTTCAAATTCTGCTATGCTA+TGG + chr2_3:42974056-42974075 Msa0293060:intron 30.0%
GAGATTTGTATACTTACTCA+AGG - chr2_3:42974344-42974363 None:intergenic 30.0%
GTCCTGAAATTCTATGTATA+TGG + chr2_3:42974414-42974433 Msa0293060:intron 30.0%
TGCCATATACATAGAATTTC+AGG - chr2_3:42974419-42974438 None:intergenic 30.0%
ATCTTGAAATGAATGATTGC+AGG + chr2_3:42974459-42974478 Msa0293060:intron 30.0%
TCTTGAAATGAATGATTGCA+GGG + chr2_3:42974460-42974479 Msa0293060:intron 30.0%
AGTATGAGAAAAATGGCTTT+CGG - chr2_3:42974664-42974683 None:intergenic 30.0%
!!! GCCATTTTTCTCATACTTTA+CGG + chr2_3:42974667-42974686 Msa0293060:intron 30.0%
ACCGTAAAGTATGAGAAAAA+TGG - chr2_3:42974671-42974690 None:intergenic 30.0%
TTGTATGAGTCATTTCATGT+CGG + chr2_3:42974809-42974828 Msa0293060:intron 30.0%
GGAAATCAAATGTCATAGTT+TGG - chr2_3:42974926-42974945 None:intergenic 30.0%
! TTGCTTTGAATTAATAGGGA+AGG + chr2_3:42975017-42975036 Msa0293060:intron 30.0%
GAAACTGTTCATCAAATGTT+TGG + chr2_3:42975039-42975058 Msa0293060:CDS 30.0%
GAAAGAACATATGTTAGGAT+AGG + chr2_3:42975258-42975277 Msa0293060:intron 30.0%
! GTGATTAAAGATTTTGCTAG+TGG + chr2_3:42975464-42975483 Msa0293060:CDS 30.0%
CATATTGGATTTCACACAAT+CGG + chr2_3:42975688-42975707 Msa0293060:CDS 30.0%
TGGTGACATATAATCTTCAA+AGG + chr2_3:42975981-42976000 Msa0293060:CDS 30.0%
CCAGATCCAAGAAAATAAAA+TGG - chr2_3:42976233-42976252 None:intergenic 30.0%
!!! CCATTTTATTTTCTTGGATC+TGG + chr2_3:42976230-42976249 Msa0293060:three_prime_UTR 30.0%
! TTTTTATGGGTCACGAGTTT+TGG - chr2_3:42972534-42972553 None:intergenic 35.0%
! TTGCTTCTTCATTTTCCATC+TGG + chr2_3:42972659-42972678 Msa0293060:five_prime_UTR 35.0%
! TGCTTCTTCATTTTCCATCT+GGG + chr2_3:42972660-42972679 Msa0293060:five_prime_UTR 35.0%
GGTAAAAACTTGGTTTCTTG+TGG + chr2_3:42972740-42972759 Msa0293060:CDS 35.0%
! CTTCCAATGCTTCTTTTCAT+AGG + chr2_3:42972768-42972787 Msa0293060:CDS 35.0%
! ATGCCTATGAAAAGAAGCAT+TGG - chr2_3:42972774-42972793 None:intergenic 35.0%
! AATTCTAAAGGGTGTGGAAA+TGG + chr2_3:42972818-42972837 Msa0293060:CDS 35.0%
ATCACTGTACCATTCAAAGT+AGG - chr2_3:42972917-42972936 None:intergenic 35.0%
GACTGAATGAAACATGTGTA+TGG - chr2_3:42973092-42973111 None:intergenic 35.0%
!! TGTAGTACTGATACTTCTGA+TGG + chr2_3:42973132-42973151 Msa0293060:intron 35.0%
GATTGAATGTTACATGTGTC+TGG - chr2_3:42973204-42973223 None:intergenic 35.0%
! TGGCATTGAAAGATTTGGTT+TGG + chr2_3:42973592-42973611 Msa0293060:intron 35.0%
!!! TGGTTTGGTTTTTGAATAGG+TGG + chr2_3:42973607-42973626 Msa0293060:intron 35.0%
! TCAAGTTCAATCCTTTTGCA+AGG - chr2_3:42973651-42973670 None:intergenic 35.0%
! ACAACCTATTCGGTGAAATA+GGG - chr2_3:42973690-42973709 None:intergenic 35.0%
! AACAACCTATTCGGTGAAAT+AGG - chr2_3:42973691-42973710 None:intergenic 35.0%
!!! GTGTGCTGTTTTTTACTATC+TGG + chr2_3:42973787-42973806 Msa0293060:intron 35.0%
TTCAGCATACCAGAAAAATG+TGG + chr2_3:42973871-42973890 Msa0293060:intron 35.0%
! GCATATCATCCACATTTTTC+TGG - chr2_3:42973883-42973902 None:intergenic 35.0%
! AGTGTAGCGGAATTCAAAAA+TGG - chr2_3:42973959-42973978 None:intergenic 35.0%
TCAGCTGCAGATATTAAAAC+TGG - chr2_3:42974240-42974259 None:intergenic 35.0%
GTATGAGAAAAATGGCTTTC+GGG - chr2_3:42974663-42974682 None:intergenic 35.0%
ATACATAGCAGATGTAGCTT+TGG - chr2_3:42974849-42974868 None:intergenic 35.0%
CCAATTTGTCAATCTTCAGA+AGG - chr2_3:42974874-42974893 None:intergenic 35.0%
! CCTTCTGAAGATTGACAAAT+TGG + chr2_3:42974871-42974890 Msa0293060:intron 35.0%
! TTCTTTTCCATCTACTTTGC+TGG + chr2_3:42974953-42974972 Msa0293060:intron 35.0%
CTAGTTCGAATAGAGGAAAA+CGG - chr2_3:42974982-42975001 None:intergenic 35.0%
TCCTCTATTCGAACTAGATT+TGG + chr2_3:42974985-42975004 Msa0293060:intron 35.0%
! ACCAAATCTAGTTCGAATAG+AGG - chr2_3:42974989-42975008 None:intergenic 35.0%
! TCAAATGTTTGGAACAAGAG+TGG + chr2_3:42975050-42975069 Msa0293060:CDS 35.0%
TCATGTTTGCACAATCATCA+TGG + chr2_3:42975091-42975110 Msa0293060:CDS 35.0%
!! GACTTCAATGTTTTCAAGGT+TGG - chr2_3:42975124-42975143 None:intergenic 35.0%
AGTCATTAAACTTATCAGCC+AGG + chr2_3:42975140-42975159 Msa0293060:CDS 35.0%
ACCGAGAAAATGTTCGAATA+CGG + chr2_3:42975629-42975648 Msa0293060:CDS 35.0%
! TTTTCCAACGCGAAAATTAC+AGG - chr2_3:42975770-42975789 None:intergenic 35.0%
TGGAAAAAGAACCAAAGTTG+AGG + chr2_3:42975783-42975802 Msa0293060:CDS 35.0%
GGAAAAAGAACCAAAGTTGA+GGG + chr2_3:42975784-42975803 Msa0293060:CDS 35.0%
TCAATGATATCCCTCAACTT+TGG - chr2_3:42975797-42975816 None:intergenic 35.0%
!!! TTCCCTTTGTGCTACTTTTT+GGG + chr2_3:42976109-42976128 Msa0293060:three_prime_UTR 35.0%
TACCAGTGTATAGACATTGA+AGG + chr2_3:42976133-42976152 Msa0293060:three_prime_UTR 35.0%
ATCCTTCAATGTCTATACAC+TGG - chr2_3:42976138-42976157 None:intergenic 35.0%
! TTTTCTTGGATCTGGTTGTA+AGG + chr2_3:42976238-42976257 Msa0293060:three_prime_UTR 35.0%
TTTCTTGGATCTGGTTGTAA+GGG + chr2_3:42976239-42976258 Msa0293060:three_prime_UTR 35.0%
! AAGGAAGAAGTGTGAAGAAG+GGG - chr2_3:42972606-42972625 None:intergenic 40.0%
! GAAGGAAGAAGTGTGAAGAA+GGG - chr2_3:42972607-42972626 None:intergenic 40.0%
! TGAAGGAAGAAGTGTGAAGA+AGG - chr2_3:42972608-42972627 None:intergenic 40.0%
CTTCACACTTCTTCCTTCAA+TGG + chr2_3:42972609-42972628 Msa0293060:five_prime_UTR 40.0%
AAGAAGCAAGTTAAGAGGGT+GGG - chr2_3:42972648-42972667 None:intergenic 40.0%
GACAATTCACAAAACCCAGA+TGG - chr2_3:42972677-42972696 None:intergenic 40.0%
! AAGGTGAATTCTAAAGGGTG+TGG + chr2_3:42972812-42972831 Msa0293060:CDS 40.0%
TGGAAATGGAGCTCGTAAAT+TGG + chr2_3:42972832-42972851 Msa0293060:CDS 40.0%
!! TGTGGTTCTGATACTTCTGA+TGG + chr2_3:42973244-42973263 Msa0293060:intron 40.0%
GCAATCAAAGACCTTGCAAA+AGG + chr2_3:42973637-42973656 Msa0293060:CDS 40.0%
! CAACCTATTCGGTGAAATAG+GGG - chr2_3:42973689-42973708 None:intergenic 40.0%
ACTATAGCGCTATAGTGTAG+CGG - chr2_3:42973972-42973991 None:intergenic 40.0%
TTGTCAAATAGCCGCTATTG+CGG - chr2_3:42973996-42974015 None:intergenic 40.0%
AGAAAAGCTGAGAAGCAAGA+AGG - chr2_3:42974126-42974145 None:intergenic 40.0%
GGATGCTCTTGATAGATTGT+AGG + chr2_3:42974204-42974223 Msa0293060:intron 40.0%
!! TCTTGTGTTCTTGGTGTCAA+GGG + chr2_3:42974299-42974318 Msa0293060:CDS 40.0%
! CTCTTTTTCTCTCTCACATG+CGG + chr2_3:42974363-42974382 Msa0293060:intron 40.0%
! ACACTAGCTTACCTCTTCTT+AGG - chr2_3:42974577-42974596 None:intergenic 40.0%
! GTATAATGATGGAACTCACC+TGG - chr2_3:42975161-42975180 None:intergenic 40.0%
GAAGATGCAAGTGACTGATA+AGG - chr2_3:42975198-42975217 None:intergenic 40.0%
ATCATTCCAAGATTCAACCC+TGG + chr2_3:42975224-42975243 Msa0293060:intron 40.0%
!! CAAAACTTTTGGTGTGTGAC+AGG + chr2_3:42975442-42975461 Msa0293060:intron 40.0%
! CCCGTATTCGAACATTTTCT+CGG - chr2_3:42975633-42975652 None:intergenic 40.0%
CCGAGAAAATGTTCGAATAC+GGG + chr2_3:42975630-42975649 Msa0293060:CDS 40.0%
TTCGAATACGGGAAGAATCT+CGG + chr2_3:42975641-42975660 Msa0293060:CDS 40.0%
TATGTCATCGACAACTTGGA+AGG - chr2_3:42975672-42975691 None:intergenic 40.0%
CCAATATGTCATCGACAACT+TGG - chr2_3:42975676-42975695 None:intergenic 40.0%
CCAAGTTGTCGATGACATAT+TGG + chr2_3:42975673-42975692 Msa0293060:CDS 40.0%
GAGTCTGAATTTAGCGAGAT+TGG + chr2_3:42975815-42975834 Msa0293060:CDS 40.0%
! AATCGAAAGAGCACAAGAGT+TGG + chr2_3:42975880-42975899 Msa0293060:CDS 40.0%
AGAGCTAATCGATACACACT+TGG - chr2_3:42975953-42975972 None:intergenic 40.0%
!! GAAGGTGTTGATGGATTTGT+TGG - chr2_3:42976092-42976111 None:intergenic 40.0%
CAAAAAGTAGCACAAAGGGA+AGG - chr2_3:42976110-42976129 None:intergenic 40.0%
!!! CTTCCCTTTGTGCTACTTTT+TGG + chr2_3:42976108-42976127 Msa0293060:three_prime_UTR 40.0%
!!! TCCCTTTGTGCTACTTTTTG+GGG + chr2_3:42976110-42976129 Msa0293060:three_prime_UTR 40.0%
ACCCCAAAAAGTAGCACAAA+GGG - chr2_3:42976114-42976133 None:intergenic 40.0%
TACCCCAAAAAGTAGCACAA+AGG - chr2_3:42976115-42976134 None:intergenic 40.0%
! AGGAAGAAGTGTGAAGAAGG+GGG - chr2_3:42972605-42972624 None:intergenic 45.0%
AGAAGCAAGTTAAGAGGGTG+GGG - chr2_3:42972647-42972666 None:intergenic 45.0%
GAAGAAGCAAGTTAAGAGGG+TGG - chr2_3:42972649-42972668 None:intergenic 45.0%
ACTGCAGAGCCTACTTTGAA+TGG + chr2_3:42972905-42972924 Msa0293060:CDS 45.0%
AACATGTGTATGGAGTTCGC+CGG - chr2_3:42973082-42973101 None:intergenic 45.0%
! CTTCTGATGGAAAGTGTGTC+TGG + chr2_3:42973145-42973164 Msa0293060:intron 45.0%
! CTTCTGATGGAAAGTGTGTC+TGG + chr2_3:42973145-42973164 Msa0293060:intron 45.0%
! CTTCTGATGGAAAGTGTGTC+TGG + chr2_3:42973145-42973164 Msa0293060:intron 45.0%
! GACATGTAAGTGTGTCACTG+CGG + chr2_3:42973496-42973515 Msa0293060:intron 45.0%
CAACCCCTATTTCACCGAAT+AGG + chr2_3:42973683-42973702 Msa0293060:CDS 45.0%
!! AGCAGATCTTTAGTGCTGGT+GGG + chr2_3:42974259-42974278 Msa0293060:CDS 45.0%
!! CTCTTGTGTTCTTGGTGTCA+AGG + chr2_3:42974298-42974317 Msa0293060:CDS 45.0%
GATGAGAGTGACCTAAGAAG+AGG + chr2_3:42974563-42974582 Msa0293060:CDS 45.0%
TCCTTTACACCTCAAGCACA+TGG + chr2_3:42974744-42974763 Msa0293060:intron 45.0%
TCTTTCATATTCACCGGCCA+GGG - chr2_3:42975244-42975263 None:intergenic 45.0%
TTCTTTCATATTCACCGGCC+AGG - chr2_3:42975245-42975264 None:intergenic 45.0%
! TTTTACACTGGCAGCGATCA+AGG - chr2_3:42975573-42975592 None:intergenic 45.0%
TTGATCGCTGCCAGTGTAAA+AGG + chr2_3:42975572-42975591 Msa0293060:CDS 45.0%
! AACTGCAGCTCCTTTTACAC+TGG - chr2_3:42975585-42975604 None:intergenic 45.0%
! AAAGGAGCTGCAGTTTTCAG+CGG + chr2_3:42975590-42975609 Msa0293060:CDS 45.0%
CAACGCGAAAATTACAGGAG+CGG - chr2_3:42975765-42975784 None:intergenic 45.0%
TCTTGACGAAGCAATCAAGC+TGG + chr2_3:42975841-42975860 Msa0293060:CDS 45.0%
ATCAAGCTGGTGAAGAGTTG+TGG + chr2_3:42975854-42975873 Msa0293060:CDS 45.0%
TCAAGCTGGTGAAGAGTTGT+GGG + chr2_3:42975855-42975874 Msa0293060:CDS 45.0%
GCTAATCGATACACACTTGG+AGG - chr2_3:42975950-42975969 None:intergenic 45.0%
!! TGTGTATCGATTAGCTCTCG+AGG + chr2_3:42975955-42975974 Msa0293060:CDS 45.0%
!! GGTCACGAGTTTTGGTGAAG+TGG - chr2_3:42972526-42972545 None:intergenic 50.0%
!! GAAGGGGGTGTTATGGAAAG+TGG - chr2_3:42972590-42972609 None:intergenic 50.0%
!! GTGTGAAGAAGGGGGTGTTA+TGG - chr2_3:42972597-42972616 None:intergenic 50.0%
TTCGGTGAAATAGGGGTTGC+TGG - chr2_3:42973682-42973701 None:intergenic 50.0%
GCGCTATAGTACCGCAATAG+CGG + chr2_3:42973982-42974001 Msa0293060:intron 50.0%
GAGAAGCAAGAAGGCTCAAC+AGG - chr2_3:42974117-42974136 None:intergenic 50.0%
GCTGAGCAGATCTTTAGTGC+TGG + chr2_3:42974255-42974274 Msa0293060:CDS 50.0%
! GAGCAGATCTTTAGTGCTGG+TGG + chr2_3:42974258-42974277 Msa0293060:CDS 50.0%
!! TCTTTAGTGCTGGTGGGAAG+AGG + chr2_3:42974265-42974284 Msa0293060:CDS 50.0%
GACACCAAGAACACAAGAGC+CGG - chr2_3:42974297-42974316 None:intergenic 50.0%
GCCATGTGCTTGAGGTGTAA+AGG - chr2_3:42974748-42974767 None:intergenic 50.0%
AGTTTCAGGCCATGTGCTTG+AGG - chr2_3:42974756-42974775 None:intergenic 50.0%
ACGGACACCAGCAAAGTAGA+TGG - chr2_3:42974963-42974982 None:intergenic 50.0%
TTCCAAGATTCAACCCTGGC+CGG + chr2_3:42975228-42975247 Msa0293060:intron 50.0%
GGATAGGTCAACCCCTTACA+TGG + chr2_3:42975274-42975293 Msa0293060:intron 50.0%
ACACAATCGGCAGAGCAACT+TGG + chr2_3:42975701-42975720 Msa0293060:CDS 50.0%
CGAAAATTACAGGAGCGGTG+AGG - chr2_3:42975760-42975779 None:intergenic 50.0%
! CGCTCCTGTAATTTTCGCGT+TGG + chr2_3:42975763-42975782 Msa0293060:CDS 50.0%
CAAGCTGGTGAAGAGTTGTG+GGG + chr2_3:42975856-42975875 Msa0293060:CDS 50.0%
AAGCTGGTGAAGAGTTGTGG+GGG + chr2_3:42975857-42975876 Msa0293060:CDS 50.0%
! TCGATTAGCTCTCGAGGACA+TGG + chr2_3:42975961-42975980 Msa0293060:CDS 50.0%
!! GCACAAAGGGAAGGTGTTGA+TGG - chr2_3:42976101-42976120 None:intergenic 50.0%
TGGTGGGAAGAGGATGAGAC+CGG + chr2_3:42974275-42974294 Msa0293060:CDS 55.0%
! GAGACCGGCTCTTGTGTTCT+TGG + chr2_3:42974290-42974309 Msa0293060:CDS 55.0%
! CTCAAGGCCATGTAGCTCTG+CGG - chr2_3:42974328-42974347 None:intergenic 55.0%
TGGAACAAGAGTGGCAGTGC+TGG + chr2_3:42975059-42975078 Msa0293060:CDS 55.0%
ACTTGCGCGCAGGGTTACTT+TGG + chr2_3:42975328-42975347 Msa0293060:intron 55.0%
TACACTGGCAGCGATCAAGG+AGG - chr2_3:42975570-42975589 None:intergenic 55.0%
GAGCAACTTGGAAAGCCTGC+AGG + chr2_3:42975713-42975732 Msa0293060:CDS 55.0%
ACTTGGAAAGCCTGCAGGCA+CGG + chr2_3:42975718-42975737 Msa0293060:CDS 55.0%
AGGAGCGGTGAGGTTACCTT+TGG - chr2_3:42975750-42975769 None:intergenic 55.0%
!! ACAAGAGTGGCAGTGCTGGC+TGG + chr2_3:42975063-42975082 Msa0293060:CDS 60.0%
CACCGGCCAGGGTTGAATCT+TGG - chr2_3:42975233-42975252 None:intergenic 60.0%
AGTAACCCTGCGCGCAAGTG+TGG - chr2_3:42975327-42975346 None:intergenic 60.0%
CGGTGAGGTTACCTTTGGCG+AGG - chr2_3:42975745-42975764 None:intergenic 60.0%
AGGGCGACCGCAGAGCTACA+TGG + chr2_3:42974318-42974337 Msa0293060:CDS 65.0%
TGGGCTCCACACTTGCGCGC+AGG + chr2_3:42975318-42975337 Msa0293060:intron 70.0%
GGGCTCCACACTTGCGCGCA+GGG + chr2_3:42975319-42975338 Msa0293060:intron 70.0%
TTGGCGAGGTCCGTGCCTGC+AGG - chr2_3:42975731-42975750 None:intergenic 70.0%
GCAGGCACGGACCTCGCCAA+AGG + chr2_3:42975731-42975750 Msa0293060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 42972511 42976309 42972511 ID=Msa0293060;Name=Msa0293060
chr2_3 mRNA 42972511 42976309 42972511 ID=Msa0293060-mRNA-1;Parent=Msa0293060;Name=Msa0293060-mRNA-1;_AED=0.21;_eAED=0.21;_QI=193|1|1|1|1|1|6|297|421
chr2_3 exon 42972511 42972926 42972511 ID=Msa0293060-mRNA-1:exon:13700;Parent=Msa0293060-mRNA-1
chr2_3 exon 42973626 42973759 42973626 ID=Msa0293060-mRNA-1:exon:13701;Parent=Msa0293060-mRNA-1
chr2_3 exon 42974219 42974346 42974219 ID=Msa0293060-mRNA-1:exon:13702;Parent=Msa0293060-mRNA-1
chr2_3 exon 42974481 42974584 42974481 ID=Msa0293060-mRNA-1:exon:13703;Parent=Msa0293060-mRNA-1
chr2_3 exon 42975034 42975161 42975034 ID=Msa0293060-mRNA-1:exon:13704;Parent=Msa0293060-mRNA-1
chr2_3 exon 42975464 42976309 42975464 ID=Msa0293060-mRNA-1:exon:13705;Parent=Msa0293060-mRNA-1
chr2_3 five_prime_UTR 42972511 42972703 42972511 ID=Msa0293060-mRNA-1:five_prime_utr;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42972704 42972926 42972704 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42973626 42973759 42973626 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42974219 42974346 42974219 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42974481 42974584 42974481 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42975034 42975161 42975034 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 CDS 42975464 42976012 42975464 ID=Msa0293060-mRNA-1:cds;Parent=Msa0293060-mRNA-1
chr2_3 three_prime_UTR 42976013 42976309 42976013 ID=Msa0293060-mRNA-1:three_prime_utr;Parent=Msa0293060-mRNA-1
Gene Sequence

>Msa0293060

ATGATGTCTGTCACTAGCAAAAGCATTGATTTTTTTGGTAAAAACTTGGTTTCTTGTGGCTGTTCTTCCAATGCTTCTTTTCATAGGCATGAAGTTAAGAATTATGCTAAGGTGAATTCTAAAGGGTGTGGAAATGGAGCTCGTAAATTGGTTTGTTGTAAGAAGAGGAATACTCATCAATATCGTGTTTCTTCTATGGATACTGCAGAGCCTACTTTGAATGGTGGAACTCAAGCAATCAAAGACCTTGCAAAAGGATTGAACTTGAAGAGTTATCCAGCAACCCCTATTTCACCGAATAGGTTGTTTGAAGTAGTCTCCGATGATCTTCAAACACTCAATAAAAATCTTCAGTCTATTGTAGGTGCAGAAAATCCAGTTTTAATATCTGCAGCTGAGCAGATCTTTAGTGCTGGTGGGAAGAGGATGAGACCGGCTCTTGTGTTCTTGGTGTCAAGGGCGACCGCAGAGCTACATGGCCTTGAGGATCTTACTGTAAAGCATCGACGTTTAGCTGAGATAGTTGAAATGATTCATACTGCAAGTTTGATACATGATGATGTGTTAGATGAGAGTGACCTAAGAAGAGGGAAGGAAACTGTTCATCAAATGTTTGGAACAAGAGTGGCAGTGCTGGCTGGAGACTTCATGTTTGCACAATCATCATGGTATCTCGCCAACCTTGAAAACATTGAAGTCATTAAACTTATCAGCCAGGTGATTAAAGATTTTGCTAGTGGAGAAATAAAGCAAGCTTCTAGCTTGTTTGACTGTGATGTTCAGCTCGACGAGTATCTAATCAAGAGTTATTTTAAGACAGCCTCCTTGATCGCTGCCAGTGTAAAAGGAGCTGCAGTTTTCAGCGGTTCTGACAGCAGCATGACCGAGAAAATGTTCGAATACGGGAAGAATCTCGGTCTCTCCTTCCAAGTTGTCGATGACATATTGGATTTCACACAATCGGCAGAGCAACTTGGAAAGCCTGCAGGCACGGACCTCGCCAAAGGTAACCTCACCGCTCCTGTAATTTTCGCGTTGGAAAAAGAACCAAAGTTGAGGGATATCATTGAGTCTGAATTTAGCGAGATTGGTTCTCTTGACGAAGCAATCAAGCTGGTGAAGAGTTGTGGGGGAATCGAAAGAGCACAAGAGTTGGCAAAAGAGAAAGCTGATCTTGCTATTCAAAGTCTTCAATGTCTTCCTCCAAGTGTGTATCGATTAGCTCTCGAGGACATGGTGACATATAATCTTCAAAGGATTGCATAA

Protein sequence

>Msa0293060

MMSVTSKSIDFFGKNLVSCGCSSNASFHRHEVKNYAKVNSKGCGNGARKLVCCKKRNTHQYRVSSMDTAEPTLNGGTQAIKDLAKGLNLKSYPATPISPNRLFEVVSDDLQTLNKNLQSIVGAENPVLISAAEQIFSAGGKRMRPALVFLVSRATAELHGLEDLTVKHRRLAEIVEMIHTASLIHDDVLDESDLRRGKETVHQMFGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVQLDEYLIKSYFKTASLIAASVKGAAVFSGSDSSMTEKMFEYGKNLGLSFQVVDDILDFTQSAEQLGKPAGTDLAKGNLTAPVIFALEKEPKLRDIIESEFSEIGSLDEAIKLVKSCGGIERAQELAKEKADLAIQSLQCLPPSVYRLALEDMVTYNLQRIA*