AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451200 MtrunA17_Chr7g0262691 89.485 485 28 6 2 485 3 465 0.0 821
Msa1451200 MtrunA17_Chr1g0182791 54.291 536 170 24 1 475 1 522 1.91e-145 429
Msa1451200 MtrunA17_Chr3g0095391 32.525 495 225 19 22 458 21 464 2.00e-51 182
Msa1451200 MtrunA17_Chr1g0193321 55.195 154 52 5 210 358 403 544 1.16e-35 142
Msa1451200 MtrunA17_Chr7g0271251 42.453 212 95 6 194 396 357 550 3.22e-30 125
Msa1451200 MtrunA17_Chr1g0153241 68.293 82 22 1 272 353 85 162 6.04e-27 110
Msa1451200 MtrunA17_Chr5g0402031 70.423 71 17 1 281 351 114 180 1.13e-22 99.4
Msa1451200 MtrunA17_Chr7g0270871 48.092 131 46 6 264 381 186 307 3.13e-22 98.6
Msa1451200 MtrunA17_Chr7g0231461 58.228 79 33 0 256 334 281 359 1.51e-21 97.8
Msa1451200 MtrunA17_Chr4g0074161 45.161 93 48 1 275 364 209 301 3.77e-17 84.0
Msa1451200 MtrunA17_Chr1g0190731 50.000 70 35 0 275 344 196 265 8.29e-16 79.0
Msa1451200 MtrunA17_Chr3g0144641 32.374 139 58 4 275 377 194 332 1.32e-12 69.7
Msa1451200 MtrunA17_Chr7g0234761 31.214 173 103 6 171 332 211 378 1.40e-12 70.1
Msa1451200 MtrunA17_Chr1g0152131 33.775 151 85 5 238 382 229 370 2.32e-12 68.9
Msa1451200 MtrunA17_Chr5g0393721 35.849 106 52 2 269 373 220 310 3.88e-12 67.8
Msa1451200 MtrunA17_Chr8g0339091 36.585 123 66 3 235 346 244 365 9.75e-12 67.4
Msa1451200 MtrunA17_Chr1g0207311 31.481 108 54 2 275 377 194 286 3.16e-11 64.3
Msa1451200 MtrunA17_Chr4g0035101 51.667 60 28 1 274 332 145 204 3.34e-11 65.1
Msa1451200 MtrunA17_Chr5g0415291 30.380 158 104 4 198 352 40 194 4.74e-11 63.2
Msa1451200 MtrunA17_Chr8g0363921 50.000 60 29 1 274 332 153 212 5.49e-11 63.5
Msa1451200 MtrunA17_Chr8g0365941 36.154 130 73 5 274 395 307 434 5.99e-11 64.7
Msa1451200 MtrunA17_Chr5g0421111 49.206 63 31 1 275 336 368 430 9.07e-11 64.3
Msa1451200 MtrunA17_Chr3g0113721 39.130 92 50 3 247 334 8 97 9.72e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451200 AT2G20180.4 41.650 497 171 28 21 466 26 454 1.89e-66 223
Msa1451200 AT2G20180.6 41.650 497 171 28 21 466 26 454 1.89e-66 223
Msa1451200 AT2G20180.2 41.650 497 171 28 21 466 26 454 1.89e-66 223
Msa1451200 AT2G20180.3 41.650 497 171 28 21 466 26 454 1.89e-66 223
Msa1451200 AT2G20180.7 42.254 426 153 24 82 466 10 383 4.34e-59 202
Msa1451200 AT2G20180.1 42.254 426 153 24 82 466 10 383 4.34e-59 202
Msa1451200 AT2G20180.5 42.254 426 153 24 82 466 10 383 4.34e-59 202
Msa1451200 AT4G28800.1 34.437 453 216 18 25 453 16 411 7.42e-52 184
Msa1451200 AT2G20180.8 42.165 351 126 20 21 332 26 338 1.09e-50 177
Msa1451200 AT4G28800.2 33.408 449 214 17 28 453 31 417 1.56e-48 175
Msa1451200 AT4G28790.1 34.860 393 192 15 18 381 14 371 2.08e-42 157
Msa1451200 AT4G28790.2 33.528 343 183 10 18 336 14 335 1.36e-34 134
Msa1451200 AT4G28811.1 34.874 476 237 19 27 473 107 538 1.73e-33 134
Msa1451200 AT1G09530.3 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT1G09530.2 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT1G09530.5 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT1G09530.1 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT1G09530.4 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT1G09530.6 58.065 124 38 4 242 357 303 420 1.92e-30 125
Msa1451200 AT2G46970.2 41.765 170 77 6 241 400 157 314 1.28e-27 115
Msa1451200 AT2G46970.3 41.765 170 77 6 241 400 166 323 1.44e-27 115
Msa1451200 AT2G46970.1 41.765 170 77 6 241 400 188 345 1.97e-27 115
Msa1451200 AT3G59060.1 56.154 130 37 4 240 355 212 335 2.28e-26 112
Msa1451200 AT3G59060.3 56.154 130 37 4 240 355 212 335 2.51e-26 112
Msa1451200 AT3G59060.2 56.154 130 37 4 240 355 212 335 2.51e-26 112
Msa1451200 AT3G59060.4 56.154 130 37 4 240 355 212 335 2.51e-26 112
Msa1451200 AT2G43010.4 56.911 123 47 2 234 355 217 334 7.59e-26 110
Msa1451200 AT4G28815.2 38.342 193 68 6 271 461 67 210 8.85e-26 106
Msa1451200 AT2G43010.2 56.911 123 47 2 234 355 217 334 9.44e-26 110
Msa1451200 AT2G43010.1 56.911 123 47 2 234 355 217 334 1.00e-25 110
Msa1451200 AT2G43010.3 56.911 123 47 2 234 355 224 341 1.10e-25 110
Msa1451200 AT2G43010.5 56.911 123 47 2 234 355 259 376 1.30e-25 110
Msa1451200 AT4G36930.1 58.036 112 38 2 247 353 161 268 2.13e-25 108
Msa1451200 AT4G28815.1 38.542 192 67 6 272 461 144 286 3.55e-25 106
Msa1451200 AT5G67110.1 62.195 82 27 1 273 354 88 165 6.78e-25 103
Msa1451200 AT4G00050.2 55.814 86 35 1 254 339 90 172 1.12e-21 95.9
Msa1451200 AT4G00050.3 55.814 86 35 1 254 339 192 274 2.43e-21 96.7
Msa1451200 AT4G00050.1 55.814 86 35 1 254 339 192 274 2.43e-21 96.7
Msa1451200 AT3G62090.1 42.754 138 65 5 274 407 167 294 7.42e-19 88.6
Msa1451200 AT3G62090.2 42.754 138 65 5 274 407 184 311 9.74e-19 88.6
Msa1451200 AT2G24260.2 56.923 65 28 0 275 339 38 102 3.16e-18 84.7
Msa1451200 AT2G24260.1 56.923 65 28 0 275 339 141 205 1.05e-17 85.1
Msa1451200 AT4G30980.1 55.385 65 29 0 275 339 133 197 2.30e-17 83.6
Msa1451200 AT4G30980.2 55.385 65 29 0 275 339 181 245 6.18e-17 83.2
Msa1451200 AT5G58010.1 50.725 69 34 0 275 343 102 170 1.73e-16 80.9
Msa1451200 AT5G50915.3 27.488 211 130 6 202 395 57 261 9.17e-14 72.0
Msa1451200 AT5G50915.4 27.488 211 130 6 202 395 57 261 9.17e-14 72.0
Msa1451200 AT5G50915.1 27.488 211 130 6 202 395 57 261 1.44e-13 72.0
Msa1451200 AT5G50915.2 27.488 211 130 6 202 395 57 261 1.44e-13 72.0
Msa1451200 AT4G28790.6 28.814 295 165 10 18 288 14 287 2.08e-13 71.6
Msa1451200 AT4G28790.3 28.814 295 165 10 18 288 14 287 2.08e-13 71.6
Msa1451200 AT4G28790.4 28.814 295 165 10 18 288 14 287 2.08e-13 71.6
Msa1451200 AT5G61270.1 39.516 124 59 3 233 352 128 239 3.44e-13 71.6
Msa1451200 AT5G61270.2 39.516 124 59 3 233 352 40 151 5.77e-13 70.1
Msa1451200 AT5G61270.3 39.516 124 59 3 233 352 40 151 5.77e-13 70.1
Msa1451200 AT3G23690.1 38.318 107 61 3 234 336 151 256 4.22e-12 68.6
Msa1451200 AT1G02340.2 36.508 126 51 7 286 404 134 237 2.07e-11 65.5
Msa1451200 AT1G59640.2 31.944 144 84 4 224 359 82 219 2.27e-11 65.9
Msa1451200 AT1G59640.1 43.182 88 42 3 274 359 138 219 2.29e-11 65.1
Msa1451200 AT1G02340.1 36.508 126 51 7 286 404 141 244 2.48e-11 65.1
Msa1451200 AT3G07340.2 35.294 119 67 3 219 336 214 323 2.64e-11 66.2
Msa1451200 AT5G62610.2 42.683 82 43 3 275 352 156 237 3.61e-11 64.7
Msa1451200 AT5G62610.1 42.683 82 43 3 275 352 156 237 3.61e-11 64.7
Msa1451200 AT1G10120.2 41.860 86 45 2 256 336 186 271 4.42e-11 65.1
Msa1451200 AT1G10120.1 41.860 86 45 2 256 336 186 271 4.42e-11 65.1
Msa1451200 AT3G07340.1 35.294 119 67 3 219 336 214 323 4.87e-11 65.5
Msa1451200 AT1G25330.1 39.241 79 47 1 267 344 99 177 5.56e-11 63.2
Msa1451200 AT5G48560.2 49.206 63 31 1 275 336 304 366 5.92e-11 65.5
Msa1451200 AT5G48560.1 49.206 63 31 1 275 336 304 366 6.24e-11 65.5
Msa1451200 AT4G36540.1 34.188 117 53 3 231 332 95 202 7.02e-11 63.9
Msa1451200 AT4G36540.2 34.188 117 53 3 231 332 95 202 7.16e-11 63.9
Msa1451200 AT1G68920.3 49.206 63 31 1 275 336 305 367 7.42e-11 65.1
Msa1451200 AT1G68920.1 49.206 63 31 1 275 336 306 368 7.71e-11 65.1
Msa1451200 AT1G68920.4 49.206 63 31 1 275 336 306 368 7.71e-11 65.1
Msa1451200 AT1G68920.2 49.206 63 31 1 275 336 306 368 7.71e-11 65.1

Find 173 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTGACTGGCGGGTTTC+TGG 0.085323 tig0033260:+12882 None:intergenic
TGTCCTGTGTTATGGGTTTC+TGG 0.091136 tig0033260:-12785 Msa1451200:CDS
TTTGCCTGCAGCCGCGAATT+TGG 0.127478 tig0033260:-13747 Msa1451200:CDS
TGATAAGGATCACTGAAATT+TGG 0.152435 tig0033260:+13587 None:intergenic
CTGATTTGCTGCTTGCATTC+TGG 0.157146 tig0033260:+13667 None:intergenic
ATTCTGTTTACAAAATAAAT+TGG 0.159492 tig0033260:-12260 Msa1451200:three_prime_UTR
GAAACATCTTCTTATCTATC+TGG 0.247098 tig0033260:-17730 Msa1451200:five_prime_UTR
CAACCCTTTCTGAGAGATTA+TGG 0.251723 tig0033260:+14856 None:intergenic
TTGCCTGCAGCCGCGAATTT+GGG 0.259006 tig0033260:-13746 Msa1451200:CDS
ATAGCTCTTGTCCTGTGTTA+TGG 0.282189 tig0033260:-12793 Msa1451200:intron
AAAACTTGGCATACTGTATT+AGG 0.288340 tig0033260:+12395 None:intergenic
CTTCTACTCCCTTCCTCTTT+CGG 0.289745 tig0033260:+16649 None:intergenic
CACCGAAGTGGCGGTGGTTT+CGG 0.296809 tig0033260:-16745 Msa1451200:CDS
AGTTACATGATTGGTTTCTT+AGG 0.305370 tig0033260:+17389 None:intergenic
TAGCTCTTGTCCTGTGTTAT+GGG 0.311035 tig0033260:-12792 Msa1451200:CDS
AATGGGGATGGGTATGGAAA+TGG 0.320817 tig0033260:-13819 Msa1451200:CDS
ATATTGGGAAATGGCATTAC+TGG 0.322002 tig0033260:+13785 None:intergenic
GGGAGTAGAAGCGGAGGAAT+GGG 0.328574 tig0033260:-16637 Msa1451200:CDS
GATAAGGATCACTGAAATTT+GGG 0.328825 tig0033260:+13588 None:intergenic
GGCATATACTGCTGGATTCC+AGG 0.330279 tig0033260:+13857 None:intergenic
ACTTATACCTCGATCTAATA+AGG 0.337045 tig0033260:-14701 Msa1451200:intron
TCAAGAGGCCTGCTGACATT+TGG 0.353245 tig0033260:+12909 None:intergenic
AAGAAAATGAAATGGCTTCA+TGG 0.355100 tig0033260:-17106 Msa1451200:CDS
AGCAGAACCGGATAACATAT+TGG 0.356663 tig0033260:+13769 None:intergenic
AGGGAGTAGAAGCGGAGGAA+TGG 0.360376 tig0033260:-16638 Msa1451200:CDS
TTCTTCAGATGACGGTGGTT+TGG 0.379401 tig0033260:+17233 None:intergenic
TTCTGTTTACAAAATAAATT+GGG 0.386150 tig0033260:-12259 Msa1451200:three_prime_UTR
TTCAAAATTGACGACGGTCC+TGG 0.387225 tig0033260:+16876 None:intergenic
ATGGGGATGGGTATGGAAAT+GGG 0.393065 tig0033260:-13818 Msa1451200:CDS
ATGAGATCATGGAGCTGTTA+TGG 0.394587 tig0033260:-17283 Msa1451200:CDS
CCATTTCCCAATATGTTATC+CGG 0.395626 tig0033260:-13776 Msa1451200:CDS
CAGAATGCAAGCAGCAAATC+AGG 0.395981 tig0033260:-13666 Msa1451200:CDS
GGCTGCAGGCAAAGCAGAAC+CGG 0.401251 tig0033260:+13757 None:intergenic
TTCATATTTCGAATCTCAAA+TGG 0.410679 tig0033260:-17435 Msa1451200:CDS
GTTATTGTTGAGTGAGTATG+AGG 0.411340 tig0033260:+17589 None:intergenic
AAGCGGAAAAGTTACATGAT+TGG 0.418255 tig0033260:+17380 None:intergenic
TTCCGTTACACTACAAAACT+TGG 0.421479 tig0033260:+12381 None:intergenic
GCAGAACCGGATAACATATT+GGG 0.422468 tig0033260:+13770 None:intergenic
GATCCTTATCAACAATATCT+TGG 0.428452 tig0033260:-13575 Msa1451200:CDS
GGTCCCAAATTCGCGGCTGC+AGG 0.429443 tig0033260:+13743 None:intergenic
AATGGGAATGGGGATGGGTA+TGG 0.431065 tig0033260:-13825 Msa1451200:CDS
TATACTACTAGCTCTCAATA+TGG 0.434563 tig0033260:-12532 Msa1451200:CDS
CAACTGTTGGCATATACTGC+TGG 0.435351 tig0033260:+13849 None:intergenic
TTGTTATTAACCGTCGGCGG+CGG 0.436019 tig0033260:+17029 None:intergenic
CTTCATGCAAGAAAATGAAA+TGG 0.444338 tig0033260:-17114 Msa1451200:CDS
CCAACAGTTGGAATGGGAAT+GGG 0.446678 tig0033260:-13836 Msa1451200:CDS
ACATGGTAAACAACCAGATC+TGG 0.451429 tig0033260:+12749 None:intergenic
CGGCGGCGGGTTAAGGAAAT+CGG 0.453500 tig0033260:+17043 None:intergenic
GGTCCAAGATATTGTTGATA+AGG 0.461439 tig0033260:+13572 None:intergenic
TGCTCCGCTACCTTCCCAAC+CGG 0.462532 tig0033260:+16675 None:intergenic
CCGGATAACATATTGGGAAA+TGG 0.466866 tig0033260:+13776 None:intergenic
CCCATTCCCATTCCAACTGT+TGG 0.469499 tig0033260:+13836 None:intergenic
CGGGTTTCTGGTTTCTCAAG+AGG 0.469774 tig0033260:+12894 None:intergenic
CTTATCTATCTGGGTATATG+TGG 0.470436 tig0033260:-17720 Msa1451200:five_prime_UTR
ATGGTACCTATGATGTTTCC+TGG 0.471988 tig0033260:-13875 Msa1451200:CDS
AGAATAGAACGTGTGGTTGT+TGG 0.472501 tig0033260:+17648 None:intergenic
TAGCAGTGAAGAAGCTGAAC+CGG 0.479213 tig0033260:-16694 Msa1451200:CDS
GGTTGGGAAGGTAGCGGAGC+AGG 0.479306 tig0033260:-16673 Msa1451200:CDS
GTTAAGGAAATCGGTGGAAA+AGG 0.482894 tig0033260:+17052 None:intergenic
TTCGCAAAGTACGCGAAGTT+CGG 0.484693 tig0033260:+16918 None:intergenic
TAGCGGAGCAGGACCGAAAG+AGG 0.484786 tig0033260:-16662 Msa1451200:CDS
TAAACAGAATAGTGTAAATG+AGG 0.486055 tig0033260:+12273 None:intergenic
GTTGGAATGGGAATGGGGAT+GGG 0.486170 tig0033260:-13830 Msa1451200:CDS
GACGATTCAACTCGCGGCGG+AGG 0.486968 tig0033260:-17188 Msa1451200:CDS
AGTTGGAATGGGAATGGGGA+TGG 0.489416 tig0033260:-13831 Msa1451200:CDS
AGCACAGTGACTTCCAGATC+TGG 0.489837 tig0033260:-12762 Msa1451200:CDS
AAACCAGAAACCCGCCAGTC+AGG 0.490474 tig0033260:-12885 Msa1451200:intron
GCCAACAGTTGGAATGGGAA+TGG 0.490991 tig0033260:-13837 Msa1451200:CDS
GTGAAGAAGCTGAACCGGTT+GGG 0.494334 tig0033260:-16689 Msa1451200:CDS
GTCGCTGCAGTTACAAGTGC+AGG 0.496663 tig0033260:-14518 Msa1451200:intron
AATAATGTGATCACCTCAGC+TGG 0.496940 tig0033260:-13638 Msa1451200:CDS
GCATCAATTGAAACTGCATC+TGG 0.498748 tig0033260:+13546 None:intergenic
TCGCGGCGGAGGAGCTTCAT+CGG 0.501663 tig0033260:-17177 Msa1451200:CDS
CTATGCAGAGGCGTCGTGAT+CGG 0.503935 tig0033260:-14753 Msa1451200:intron
TGGATTCCAGGAAACATCAT+AGG 0.504622 tig0033260:+13869 None:intergenic
TGTTATTAACCGTCGGCGGC+GGG 0.505645 tig0033260:+17030 None:intergenic
TTCATGACATGACATATTAG+TGG 0.506685 tig0033260:+17505 None:intergenic
CAGTGCAGATGATGAGATCA+TGG 0.509755 tig0033260:-17294 Msa1451200:CDS
AAACATCTTCTTATCTATCT+GGG 0.509776 tig0033260:-17729 Msa1451200:five_prime_UTR
GAGGCCTGCTGACATTTGGT+TGG 0.510685 tig0033260:+12913 None:intergenic
GTCTGACAAAGCATCTATGC+TGG 0.514190 tig0033260:-14563 Msa1451200:CDS
CGGAGGAGCTTCATCGGCGA+GGG 0.525295 tig0033260:-17171 Msa1451200:CDS
GAGGAAGGGAGTAGAAGCGG+AGG 0.530303 tig0033260:-16643 Msa1451200:CDS
TTTCCTTAACCCGCCGCCGA+CGG 0.530560 tig0033260:-17039 Msa1451200:CDS
GTATATGCCAACAGTTGGAA+TGG 0.532323 tig0033260:-13843 Msa1451200:CDS
GGAGCAGGACCGAAAGAGGA+AGG 0.532955 tig0033260:-16658 Msa1451200:CDS
CACGGTGTAAGAACCGAGCC+AGG 0.537878 tig0033260:-16894 Msa1451200:CDS
GATAAGGCAATTTACCTGAC+TGG 0.538094 tig0033260:+12871 None:intergenic
AAAGAGGAAGGGAGTAGAAG+CGG 0.541766 tig0033260:-16646 Msa1451200:CDS
GTGGAAAAGGTTTGTTCGAA+AGG 0.542709 tig0033260:+17065 None:intergenic
TTGGCCTCTGTGTAACGACT+TGG 0.544571 tig0033260:+17252 None:intergenic
TATATGCCAACAGTTGGAAT+GGG 0.544698 tig0033260:-13842 Msa1451200:CDS
AGGAGACACCGAAGTGGCGG+TGG 0.545778 tig0033260:-16751 Msa1451200:CDS
GGAGACGGTAAGAAGTTTAG+CGG 0.545838 tig0033260:-16784 Msa1451200:CDS
TGCCGAAACCACCGCCACTT+CGG 0.546281 tig0033260:+16743 None:intergenic
GATGCAGTTTCAATTGATGC+AGG 0.546912 tig0033260:-13543 Msa1451200:intron
AAGAAGTTTAGCGGATCAAA+CGG 0.547113 tig0033260:-16775 Msa1451200:CDS
AGGCAATTTACCTGACTGGC+GGG 0.549682 tig0033260:+12875 None:intergenic
TCTCAAATGGATCAACAAGC+AGG 0.550538 tig0033260:-17422 Msa1451200:CDS
CAGCAGTATATGCCAACAGT+TGG 0.551794 tig0033260:-13848 Msa1451200:CDS
ACTTATGCAGATGATGTCCA+TGG 0.558617 tig0033260:-13906 Msa1451200:CDS
GGTCCATAATCTCTCAGAAA+GGG 0.559468 tig0033260:-14859 Msa1451200:intron
ATGATTGGTTTCTTAGGACG+AGG 0.561500 tig0033260:+17395 None:intergenic
AATTGACGACGGTCCTGGCT+CGG 0.563062 tig0033260:+16881 None:intergenic
GAGCAGGACCGAAAGAGGAA+GGG 0.563277 tig0033260:-16657 Msa1451200:CDS
TTCGCGTACTTTGCGAAGCA+CGG 0.563359 tig0033260:-16912 Msa1451200:CDS
TGAACCAACCAAATGTCAGC+AGG 0.563946 tig0033260:-12917 Msa1451200:CDS
GCTTGCATTCTGGATGAACC+AGG 0.565601 tig0033260:+13677 None:intergenic
ACCGTCTCCGAAAACGCCGC+CGG 0.567574 tig0033260:+16798 None:intergenic
GGAACATGCGGCATGTGGAA+AGG 0.567580 tig0033260:+13704 None:intergenic
AAACAGAATAGTGTAAATGA+GGG 0.569975 tig0033260:+12274 None:intergenic
AAAGAGATCTCGTGCTGCTG+AGG 0.571066 tig0033260:-14880 Msa1451200:CDS
AGTGAAGAAGCTGAACCGGT+TGG 0.572237 tig0033260:-16690 Msa1451200:CDS
AAAGGAGGCATCACGAACCT+TGG 0.572272 tig0033260:+13722 None:intergenic
AGGTGTAATTAAAAGATGAC+AGG 0.574178 tig0033260:+17555 None:intergenic
TCATGACATGACATATTAGT+GGG 0.574614 tig0033260:+17506 None:intergenic
CAACAGTTGGAATGGGAATG+GGG 0.575101 tig0033260:-13835 Msa1451200:CDS
ATGCCGCATGTTCCTACACC+TGG 0.577972 tig0033260:-13695 Msa1451200:CDS
CAATTGAAACTGCATCTGGT+GGG 0.578724 tig0033260:+13550 None:intergenic
TACAATACAAACTCCGACGT+CGG 0.578904 tig0033260:-17003 Msa1451200:CDS
GAACCTTGGTCCCAAATTCG+CGG 0.579140 tig0033260:+13736 None:intergenic
AGGTACCATGCCACATCCCA+TGG 0.582211 tig0033260:+13889 None:intergenic
AATAGTCACTACACTACGAC+GGG 0.582670 tig0033260:+17680 None:intergenic
GTGTAGGAACATGCGGCATG+TGG 0.583623 tig0033260:+13699 None:intergenic
GCGGAGGAGCTTCATCGGCG+AGG 0.587970 tig0033260:-17172 Msa1451200:CDS
ATTTACATACATATACTCGA+TGG 0.593255 tig0033260:+12208 None:intergenic
AATTGAAACTGCATCTGGTG+GGG 0.594089 tig0033260:+13551 None:intergenic
TCAAGGGCTGGCTATGCAGA+TGG 0.595639 tig0033260:-12580 Msa1451200:intron
GCAGTGGTTTCTTCAGATGA+CGG 0.597213 tig0033260:+17225 None:intergenic
CAGTTTACCTTATTAGATCG+AGG 0.600812 tig0033260:+14694 None:intergenic
CAGATGATGTCCATGGGATG+TGG 0.601497 tig0033260:-13899 Msa1451200:CDS
AGAAGCTGAACCGGTTGGGA+AGG 0.602490 tig0033260:-16685 Msa1451200:CDS
AGGTCCATAATCTCTCAGAA+AGG 0.604467 tig0033260:-14860 Msa1451200:CDS
CAGCCGCGAATTTGGGACCA+AGG 0.608681 tig0033260:-13739 Msa1451200:CDS
GTACTGTTGTTATTAACCGT+CGG 0.610377 tig0033260:+17023 None:intergenic
TGATACACCAGCTGTGATGC+CGG 0.610769 tig0033260:-16817 Msa1451200:CDS
TCCGCCGCGAGTTGAATCGT+CGG 0.611337 tig0033260:+17190 None:intergenic
AAAGCAAAGCAAATTAAAGT+CGG 0.621251 tig0033260:+17529 None:intergenic
ACATGCGGCATGTGGAAAGG+AGG 0.621566 tig0033260:+13707 None:intergenic
AAGCAAATTAAAGTCGGTGA+AGG 0.621623 tig0033260:+17535 None:intergenic
ATTCTGGATGAACCAGGTGT+AGG 0.621664 tig0033260:+13683 None:intergenic
AATACAAACTCCGACGTCGG+TGG 0.622484 tig0033260:-17000 Msa1451200:CDS
TGAATCATGTGTTCCAGCTG+AGG 0.623133 tig0033260:+13625 None:intergenic
GAACCAGGTGTAGGAACATG+CGG 0.626770 tig0033260:+13692 None:intergenic
AACTCCGACGATTCAACTCG+CGG 0.628283 tig0033260:-17194 Msa1451200:CDS
TCAATTGAAACTGCATCTGG+TGG 0.633505 tig0033260:+13549 None:intergenic
AAGGCAATTTACCTGACTGG+CGG 0.635377 tig0033260:+12874 None:intergenic
GACGGGACAGAGCACAAGCG+AGG 0.635745 tig0033260:+17697 None:intergenic
TGAACCGGTTGGGAAGGTAG+CGG 0.635941 tig0033260:-16679 Msa1451200:CDS
TCATCTGAAGAAACCACTGC+CGG 0.639590 tig0033260:-17222 Msa1451200:CDS
GGAAGGAGACACCGAAGTGG+CGG 0.644638 tig0033260:-16754 Msa1451200:CDS
AGTTTAGCGGATCAAACGGA+AGG 0.644672 tig0033260:-16771 Msa1451200:CDS
GATGTCCATGGGATGTGGCA+TGG 0.651695 tig0033260:-13894 Msa1451200:CDS
TGCGAGGGAATCAACAGTGG+TGG 0.655914 tig0033260:-16847 Msa1451200:CDS
GTGGTTTCTTCAGATGACGG+TGG 0.658476 tig0033260:+17228 None:intergenic
ATAGAATTACTTCATTGACA+TGG 0.663562 tig0033260:+12732 None:intergenic
TTGGCATACTGTATTAGGAG+TGG 0.665219 tig0033260:+12400 None:intergenic
GAATAGTCACTACACTACGA+CGG 0.667796 tig0033260:+17679 None:intergenic
TCACTGCTACTTGAACCGCC+CGG 0.678494 tig0033260:+16708 None:intergenic
CGAGAAGGAACCACCGACGT+CGG 0.693171 tig0033260:+16990 None:intergenic
TGCACGTGCCCTATCCTCCG+TGG 0.693280 tig0033260:+16951 None:intergenic
AACGGAAGGAGACACCGAAG+TGG 0.694309 tig0033260:-16757 Msa1451200:CDS
GGAATGGGAATATCAGAGCG+AGG 0.695426 tig0033260:-16622 Msa1451200:intron
GCAAGCTAATCTATACTACA+CGG 0.696429 tig0033260:-12334 Msa1451200:three_prime_UTR
TGGGTACAATAATTGAACAG+AGG 0.701316 tig0033260:-12240 Msa1451200:three_prime_UTR
TACACCAGCTGTGATGCCGG+CGG 0.704142 tig0033260:-16814 Msa1451200:CDS
CTTATGCAGATGATGTCCAT+GGG 0.705255 tig0033260:-13905 Msa1451200:CDS
GCTCCAGAAACCCATAACAC+AGG 0.711170 tig0033260:+12782 None:intergenic
GCAGTGTTCAAAATTGACGA+CGG 0.720480 tig0033260:+16870 None:intergenic
TGCTGCGAGGGAATCAACAG+TGG 0.723697 tig0033260:-16850 Msa1451200:CDS
CTGTTGTTATTAACCGTCGG+CGG 0.728995 tig0033260:+17026 None:intergenic
ACGGCCAAGTCGTTACACAG+AGG 0.765940 tig0033260:-17256 Msa1451200:CDS
TCCGACGATTCAACTCGCGG+CGG 0.774522 tig0033260:-17191 Msa1451200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACACAAAATAATTAATAAA+CGG + tig0033260:12503-12522 None:intergenic 10.0%
!! TAAAAAATGTTAATGAAAAA+TGG + tig0033260:14831-14850 None:intergenic 10.0%
!! ATGTTATGTTATATATAAAT+TGG - tig0033260:16781-16800 Msa1451200:CDS 10.0%
!! TAACTATGAATAATTAATAA+TGG - tig0033260:17394-17413 Msa1451200:intron 10.0%
!! TGTTAGAATAAAGAATAAAT+GGG + tig0033260:14745-14764 None:intergenic 15.0%
!!! TTTTATTTCTTGATAATGTA+AGG - tig0033260:15198-15217 Msa1451200:intron 15.0%
!!! TTTATTTCTTGATAATGTAA+GGG - tig0033260:15199-15218 Msa1451200:intron 15.0%
!! AAAGATTAGAAACAAAAATA+AGG + tig0033260:15250-15269 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + tig0033260:16535-16554 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - tig0033260:16534-16553 Msa1451200:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - tig0033260:16558-16577 Msa1451200:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - tig0033260:16661-16680 Msa1451200:CDS 15.0%
!! ATTCTGTTTACAAAATAAAT+TGG - tig0033260:17590-17609 Msa1451200:five_prime_UTR 15.0%
!! TTCTGTTTACAAAATAAATT+GGG - tig0033260:17591-17610 Msa1451200:five_prime_UTR 15.0%
!! TCAAGTATTATCAATTATTG+AGG - tig0033260:13722-13741 Msa1451200:CDS 20.0%
!! AAAGTTCAATTAATTACAGA+AGG - tig0033260:13904-13923 Msa1451200:CDS 20.0%
!! AAGTTCAATTAATTACAGAA+GGG - tig0033260:13905-13924 Msa1451200:CDS 20.0%
!! ACAGAAAGAAATAGAAAATA+AGG - tig0033260:14469-14488 Msa1451200:intron 20.0%
!! CAGAAAGAAATAGAAAATAA+GGG - tig0033260:14470-14489 Msa1451200:intron 20.0%
!! AATAAGGGATTCAATATATT+TGG - tig0033260:14485-14504 Msa1451200:intron 20.0%
!! ATTCAATATATTTGGCATTT+GGG - tig0033260:14493-14512 Msa1451200:intron 20.0%
!! TGTATAAATAGGAGAAATAA+AGG + tig0033260:14655-14674 None:intergenic 20.0%
!! CTGTTAGAATAAAGAATAAA+TGG + tig0033260:14746-14765 None:intergenic 20.0%
!! TTATCAAGAAATAAAACACT+GGG + tig0033260:15194-15213 None:intergenic 20.0%
!! ATTATCAAGAAATAAAACAC+TGG + tig0033260:15195-15214 None:intergenic 20.0%
!!! TTATTTCTTGATAATGTAAG+GGG - tig0033260:15200-15219 Msa1451200:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + tig0033260:16544-16563 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - tig0033260:16621-16640 Msa1451200:intron 20.0%
!!! TATTTTACTTTTAACTCAAC+TGG - tig0033260:16804-16823 Msa1451200:CDS 20.0%
!!! ATTTTACTTTTAACTCAACT+GGG - tig0033260:16805-16824 Msa1451200:CDS 20.0%
!!! AAACATTTGATCGTTTTTAT+TGG + tig0033260:16880-16899 None:intergenic 20.0%
!!! TATTCTGTGTTTTAATGATT+TGG - tig0033260:17032-17051 Msa1451200:CDS 20.0%
!! ATTTGAATTGAAGGTTAAAT+TGG + tig0033260:17153-17172 None:intergenic 20.0%
!! CCATATTTGATGTATAATAA+AGG + tig0033260:17186-17205 None:intergenic 20.0%
!! CCTTTATTATACATCAAATA+TGG - tig0033260:17183-17202 Msa1451200:CDS 20.0%
!!! TTTTTTCTTTGATTATGTTC+AGG - tig0033260:17220-17239 Msa1451200:CDS 20.0%
!!! TTTGTGAAATATAGTTTTTC+CGG + tig0033260:17367-17386 None:intergenic 20.0%
!! AAACTATATTTCACAAAACA+TGG - tig0033260:17370-17389 Msa1451200:intron 20.0%
! AAACATCTTCTTATCTATCT+GGG - tig0033260:12121-12140 Msa1451200:three_prime_UTR 25.0%
! AAAGCAAAGCAAATTAAAGT+CGG + tig0033260:12324-12343 None:intergenic 25.0%
! TTCATATTTCGAATCTCAAA+TGG - tig0033260:12415-12434 Msa1451200:CDS 25.0%
!!! TATTGATTGTAGTTTTCTAC+TGG + tig0033260:12713-12732 None:intergenic 25.0%
! CCTAGAAAAGTTTCTTTAAA+AGG + tig0033260:13459-13478 None:intergenic 25.0%
!!! CCTTTTAAAGAAACTTTTCT+AGG - tig0033260:13456-13475 Msa1451200:intron 25.0%
!!! TGTTTGGTTCTACTTTTTAA+GGG + tig0033260:13796-13815 None:intergenic 25.0%
!!! ATGTTTGGTTCTACTTTTTA+AGG + tig0033260:13797-13816 None:intergenic 25.0%
! CTAACAACAAAATGTATGTT+TGG + tig0033260:13812-13831 None:intergenic 25.0%
! GCATTGCATATTCTATTAAA+TGG - tig0033260:14091-14110 Msa1451200:intron 25.0%
! TAAATGATTATCGTAGCAAT+TGG + tig0033260:14355-14374 None:intergenic 25.0%
!! TTCTATTTCTTTCTGTATCT+AGG + tig0033260:14465-14484 None:intergenic 25.0%
! GATTCAATATATTTGGCATT+TGG - tig0033260:14492-14511 Msa1451200:intron 25.0%
! TTCAATATATTTGGCATTTG+GGG - tig0033260:14494-14513 Msa1451200:intron 25.0%
! AATAGACAGTACAAAAACAT+GGG + tig0033260:14772-14791 None:intergenic 25.0%
!! TTTTCAACATTTTTGTGAGA+TGG - tig0033260:14803-14822 Msa1451200:intron 25.0%
! TCTAATTGTATTGCTGTAAA+AGG - tig0033260:14895-14914 Msa1451200:CDS 25.0%
!!! TGATCCACTGATATTTTTTT+GGG + tig0033260:14945-14964 None:intergenic 25.0%
!!! ATGATCCACTGATATTTTTT+TGG + tig0033260:14946-14965 None:intergenic 25.0%
!!! TTTTAAAGAAACTTCACATC+TGG - tig0033260:15716-15735 Msa1451200:intron 25.0%
! TAAAATAATATATGTGGTGG+TGG + tig0033260:16423-16442 None:intergenic 25.0%
! GAGTAAAATAATATATGTGG+TGG + tig0033260:16426-16445 None:intergenic 25.0%
! AGGGAGTAAAATAATATATG+TGG + tig0033260:16429-16448 None:intergenic 25.0%
! TCAGTACAAATTTGAATTGA+AGG + tig0033260:17162-17181 None:intergenic 25.0%
! TGTTTGATTGTTTCAATCAA+GGG - tig0033260:17254-17273 Msa1451200:CDS 25.0%
!! TTGTGAAATATAGTTTTTCC+GGG + tig0033260:17366-17385 None:intergenic 25.0%
! AAACAGAATAGTGTAAATGA+GGG + tig0033260:17579-17598 None:intergenic 25.0%
! TAAACAGAATAGTGTAAATG+AGG + tig0033260:17580-17599 None:intergenic 25.0%
! ATTTACATACATATACTCGA+TGG + tig0033260:17645-17664 None:intergenic 25.0%
GAAACATCTTCTTATCTATC+TGG - tig0033260:12120-12139 Msa1451200:three_prime_UTR 30.0%
AGGTGTAATTAAAAGATGAC+AGG + tig0033260:12298-12317 None:intergenic 30.0%
TCATGACATGACATATTAGT+GGG + tig0033260:12347-12366 None:intergenic 30.0%
TTCATGACATGACATATTAG+TGG + tig0033260:12348-12367 None:intergenic 30.0%
!! AGTTACATGATTGGTTTCTT+AGG + tig0033260:12464-12483 None:intergenic 30.0%
TAATAAACGGTAAGATGAAG+CGG + tig0033260:12490-12509 None:intergenic 30.0%
CTTCATGCAAGAAAATGAAA+TGG - tig0033260:12736-12755 Msa1451200:intron 30.0%
AAGAAAATGAAATGGCTTCA+TGG - tig0033260:12744-12763 Msa1451200:CDS 30.0%
!!! GTTTGGTTCTACTTTTTAAG+GGG + tig0033260:13795-13814 None:intergenic 30.0%
! GCATATGGTTTAAAGTGTAA+GGG - tig0033260:13851-13870 Msa1451200:CDS 30.0%
!! GGTTTTATGATTGAAGAAGT+TGG - tig0033260:13926-13945 Msa1451200:intron 30.0%
GAAAAATGCATTCTTGAACA+TGG - tig0033260:14144-14163 Msa1451200:intron 30.0%
TATCAAATTGTGCTTAGTTG+TGG - tig0033260:14194-14213 Msa1451200:intron 30.0%
TACGATAATCATTTAAGCTG+AGG - tig0033260:14360-14379 Msa1451200:intron 30.0%
! TTTGAAGTGAAAAAGAACTC+TGG + tig0033260:14572-14591 None:intergenic 30.0%
AGGGGTTATCATGTATAAAT+AGG + tig0033260:14666-14685 None:intergenic 30.0%
AGTGTAGTTGATTAAGTAGA+GGG + tig0033260:14685-14704 None:intergenic 30.0%
TAGTGTAGTTGATTAAGTAG+AGG + tig0033260:14686-14705 None:intergenic 30.0%
GTTAGAGTAATAGAGTAGTA+AGG + tig0033260:14721-14740 None:intergenic 30.0%
CAATAGACAGTACAAAAACA+TGG + tig0033260:14773-14792 None:intergenic 30.0%
!! GTGAAAATTTTAATGTTGCG+AGG + tig0033260:15068-15087 None:intergenic 30.0%
ACTTATACCTCGATCTAATA+AGG - tig0033260:15149-15168 Msa1451200:intron 30.0%
TCTATGCTCATAAATTGCTT+AGG - tig0033260:15440-15459 Msa1451200:intron 30.0%
AAAAGCAACTCAGTTGATTA+CGG - tig0033260:15563-15582 Msa1451200:intron 30.0%
! TTTATAGCTTCCAAAGGTTT+TGG - tig0033260:15615-15634 Msa1451200:intron 30.0%
! TTATAGCTTCCAAAGGTTTT+GGG - tig0033260:15616-15635 Msa1451200:intron 30.0%
TAACATAGGAAAGCTTAAGA+TGG - tig0033260:15652-15671 Msa1451200:intron 30.0%
TAAAGGTCACGAATATATAG+AGG + tig0033260:15855-15874 None:intergenic 30.0%
ATATTCGTGACCTTTACAAA+AGG - tig0033260:15859-15878 Msa1451200:intron 30.0%
GATAAGGATCACTGAAATTT+GGG + tig0033260:16265-16284 None:intergenic 30.0%
TGATAAGGATCACTGAAATT+TGG + tig0033260:16266-16285 None:intergenic 30.0%
GATCCTTATCAACAATATCT+TGG - tig0033260:16275-16294 Msa1451200:intron 30.0%
GTACTCAGAAGTAATATTAG+AGG + tig0033260:16341-16360 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + tig0033260:16452-16471 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - tig0033260:16453-16472 Msa1451200:intron 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG - tig0033260:16583-16602 Msa1451200:intron 30.0%
! TGTGCAAAGTATTAATTGGA+GGG - tig0033260:16587-16606 Msa1451200:intron 30.0%
TCCTGCAAAATACTAAGATA+AGG + tig0033260:16998-17017 None:intergenic 30.0%
! TTGAAGGTTAAATTGGTTCT+TGG + tig0033260:17146-17165 None:intergenic 30.0%
CTGTTTGATTGTTTCAATCA+AGG - tig0033260:17253-17272 Msa1451200:CDS 30.0%
! TATACTACTAGCTCTCAATA+TGG - tig0033260:17318-17337 Msa1451200:intron 30.0%
ACTAGTATTATTGTAAGTCC+CGG - tig0033260:17345-17364 Msa1451200:intron 30.0%
AAAACTTGGCATACTGTATT+AGG + tig0033260:17458-17477 None:intergenic 30.0%
CTTATCTATCTGGGTATATG+TGG - tig0033260:12130-12149 Msa1451200:three_prime_UTR 35.0%
! ATTTTGCAGAATAGAACGTG+TGG + tig0033260:12212-12231 None:intergenic 35.0%
GTTATTGTTGAGTGAGTATG+AGG + tig0033260:12264-12283 None:intergenic 35.0%
AAGCAAATTAAAGTCGGTGA+AGG + tig0033260:12318-12337 None:intergenic 35.0%
AAGCGGAAAAGTTACATGAT+TGG + tig0033260:12473-12492 None:intergenic 35.0%
ATGGAGCTGTTATGGAAAAA+CGG - tig0033260:12575-12594 Msa1451200:CDS 35.0%
! GTACTGTTGTTATTAACCGT+CGG + tig0033260:12830-12849 None:intergenic 35.0%
! AAGAAGTTTAGCGGATCAAA+CGG - tig0033260:13075-13094 Msa1451200:intron 35.0%
GAATCCAAAAGTTAAAGCAG+CGG + tig0033260:13327-13346 None:intergenic 35.0%
AACCGTAGCTTTCATAAAAG+CGG - tig0033260:13377-13396 Msa1451200:intron 35.0%
CGAATTTATCACGATACACA+TGG + tig0033260:13433-13452 None:intergenic 35.0%
!!! CTATTTTTTCCAGTAGCGTA+TGG - tig0033260:13537-13556 Msa1451200:intron 35.0%
! GGCATATGGTTTAAAGTGTA+AGG - tig0033260:13850-13869 Msa1451200:CDS 35.0%
! ATGGTTTAAAGTGTAAGGGT+AGG - tig0033260:13855-13874 Msa1451200:CDS 35.0%
! TGGTTTAAAGTGTAAGGGTA+GGG - tig0033260:13856-13875 Msa1451200:CDS 35.0%
TTGGACATGATGAGGAATAT+TGG - tig0033260:13945-13964 Msa1451200:intron 35.0%
TGGACATGATGAGGAATATT+GGG - tig0033260:13946-13965 Msa1451200:intron 35.0%
! TTCTTGAACATGGTTAGTTG+TGG - tig0033260:14154-14173 Msa1451200:intron 35.0%
CAGTTTGGACATTACAATAG+TGG - tig0033260:14391-14410 Msa1451200:intron 35.0%
ACATTACAATAGTGGCGAAA+TGG - tig0033260:14399-14418 Msa1451200:intron 35.0%
TATTGAGACTTGTGAGTGAA+AGG + tig0033260:14605-14624 None:intergenic 35.0%
GTGTAGTTGATTAAGTAGAG+GGG + tig0033260:14684-14703 None:intergenic 35.0%
!!! GGATGTTGATTTTGAATCTG+CGG - tig0033260:14916-14935 Msa1451200:CDS 35.0%
GAAGCCCAAAAAAATATCAG+TGG - tig0033260:14938-14957 Msa1451200:intron 35.0%
CAGTTTACCTTATTAGATCG+AGG + tig0033260:15159-15178 None:intergenic 35.0%
TGTCAGACTGAATTAAGAGT+AGG + tig0033260:15275-15294 None:intergenic 35.0%
!!! GCAGGTAGATTCTTCTTTTT+TGG - tig0033260:15350-15369 Msa1451200:intron 35.0%
GAATTTACAACACAAACGTG+AGG + tig0033260:15398-15417 None:intergenic 35.0%
ATGCTCATAAATTGCTTAGG+CGG - tig0033260:15443-15462 Msa1451200:intron 35.0%
TGGAAGCTATAAAGACACTT+GGG + tig0033260:15608-15627 None:intergenic 35.0%
TTGGAAGCTATAAAGACACT+TGG + tig0033260:15609-15628 None:intergenic 35.0%
AGTGTCTTTATAGCTTCCAA+AGG - tig0033260:15609-15628 Msa1451200:intron 35.0%
TCATTTCTAATGCGTGAACT+TGG + tig0033260:15832-15851 None:intergenic 35.0%
TATATGCCAACAGTTGGAAT+GGG - tig0033260:16008-16027 Msa1451200:intron 35.0%
ATATTGGGAAATGGCATTAC+TGG + tig0033260:16068-16087 None:intergenic 35.0%
CCATTTCCCAATATGTTATC+CGG - tig0033260:16074-16093 Msa1451200:intron 35.0%
GGTCCAAGATATTGTTGATA+AGG + tig0033260:16281-16300 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+AGG - tig0033260:16586-16605 Msa1451200:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - tig0033260:16687-16706 Msa1451200:CDS 35.0%
TCATTGCTTGATTCTACACA+TGG + tig0033260:16916-16935 None:intergenic 35.0%
! GCCTTATCTTAGTATTTTGC+AGG - tig0033260:16994-17013 Msa1451200:CDS 35.0%
!! TGCCAAGTTTTGTAGTGTAA+CGG - tig0033260:17467-17486 Msa1451200:exon 35.0%
TTCCGTTACACTACAAAACT+TGG + tig0033260:17472-17491 None:intergenic 35.0%
GCAAGCTAATCTATACTACA+CGG - tig0033260:17516-17535 Msa1451200:five_prime_UTR 35.0%
TGGGTACAATAATTGAACAG+AGG - tig0033260:17610-17629 Msa1451200:five_prime_UTR 35.0%
AATAGTCACTACACTACGAC+GGG + tig0033260:12173-12192 None:intergenic 40.0%
GAATAGTCACTACACTACGA+CGG + tig0033260:12174-12193 None:intergenic 40.0%
AGAATAGAACGTGTGGTTGT+TGG + tig0033260:12205-12224 None:intergenic 40.0%
TCTCAAATGGATCAACAAGC+AGG - tig0033260:12428-12447 Msa1451200:intron 40.0%
!! ATGATTGGTTTCTTAGGACG+AGG + tig0033260:12458-12477 None:intergenic 40.0%
ATGAGATCATGGAGCTGTTA+TGG - tig0033260:12567-12586 Msa1451200:CDS 40.0%
! GTGGAAAAGGTTTGTTCGAA+AGG + tig0033260:12788-12807 None:intergenic 40.0%
GTTAAGGAAATCGGTGGAAA+AGG + tig0033260:12801-12820 None:intergenic 40.0%
TACAATACAAACTCCGACGT+CGG - tig0033260:12847-12866 Msa1451200:intron 40.0%
GCAGTGTTCAAAATTGACGA+CGG + tig0033260:12983-13002 None:intergenic 40.0%
! AATTTTGAACACTGCTGCGA+GGG - tig0033260:12988-13007 Msa1451200:intron 40.0%
! TTCGGCAACTTTTGATGAAC+CGG - tig0033260:13123-13142 Msa1451200:intron 40.0%
GTGTGTGTGATTGTGCTTTA+TGG - tig0033260:13354-13373 Msa1451200:intron 40.0%
TGAGTTGCTCACACTATGTA+CGG + tig0033260:13515-13534 None:intergenic 40.0%
TTAGTTGCGACTTTACCACT+TGG - tig0033260:13828-13847 Msa1451200:CDS 40.0%
TAGTTGCGACTTTACCACTT+GGG - tig0033260:13829-13848 Msa1451200:CDS 40.0%
CTTTAAACCATATGCCCAAG+TGG + tig0033260:13846-13865 None:intergenic 40.0%
! GGTTTAAAGTGTAAGGGTAG+GGG - tig0033260:13857-13876 Msa1451200:CDS 40.0%
TGAAGAAGTTGGACATGATG+AGG - tig0033260:13937-13956 Msa1451200:intron 40.0%
ACATGATGAGGAATATTGGG+TGG - tig0033260:13949-13968 Msa1451200:intron 40.0%
TTGTGAAAGCTGCTTAAGCA+TGG - tig0033260:13991-14010 Msa1451200:intron 40.0%
CAAAGAACTTTAGTCCAGCT+TGG + tig0033260:14068-14087 None:intergenic 40.0%
CAAATTGTGCTTAGTTGTGG+AGG - tig0033260:14197-14216 Msa1451200:intron 40.0%
CTTAGTTGTGGAGGTTGAAT+AGG - tig0033260:14206-14225 Msa1451200:intron 40.0%
! GTTGAATAGGCAGGGTTTTT+AGG - tig0033260:14219-14238 Msa1451200:intron 40.0%
!!! AATAGGCAGGGTTTTTAGGT+AGG - tig0033260:14223-14242 Msa1451200:intron 40.0%
AGGTAGGAATCCTTAGCAAT+TGG - tig0033260:14239-14258 Msa1451200:intron 40.0%
TCCTTAGCAATTGGCATAAG+CGG - tig0033260:14248-14267 Msa1451200:intron 40.0%
! CAAACTTTTCCTGCTTCATC+GGG + tig0033260:14282-14301 None:intergenic 40.0%
! CCAAACTTTTCCTGCTTCAT+CGG + tig0033260:14283-14302 None:intergenic 40.0%
CGATGAAGCAGGAAAAGTTT+GGG - tig0033260:14281-14300 Msa1451200:intron 40.0%
GCTGAGGACTAAAATCAGTT+TGG - tig0033260:14376-14395 Msa1451200:intron 40.0%
AGGTCCATAATCTCTCAGAA+AGG - tig0033260:14990-15009 Msa1451200:intron 40.0%
GGTCCATAATCTCTCAGAAA+GGG - tig0033260:14991-15010 Msa1451200:intron 40.0%
! CAACCCTTTCTGAGAGATTA+TGG + tig0033260:14997-15016 None:intergenic 40.0%
CATAATCTCTCAGAAAGGGT+TGG - tig0033260:14995-15014 Msa1451200:intron 40.0%
CACATTGCATTTCTATGCAG+AGG - tig0033260:15085-15104 Msa1451200:intron 40.0%
!! TTCTTGATAATGTAAGGGGC+AGG - tig0033260:15204-15223 Msa1451200:intron 40.0%
!! TCTTGATAATGTAAGGGGCA+GGG - tig0033260:15205-15224 Msa1451200:intron 40.0%
! CTTTTGTAATGTTCCACCAC+AGG + tig0033260:15548-15567 None:intergenic 40.0%
GGAAGCTATAAAGACACTTG+GGG + tig0033260:15607-15626 None:intergenic 40.0%
GAGGATGGGTACTATAACAT+AGG - tig0033260:15638-15657 Msa1451200:intron 40.0%
TCACATCTGGAAATTGTGAG+AGG - tig0033260:15729-15748 Msa1451200:intron 40.0%
CACATCTGGAAATTGTGAGA+GGG - tig0033260:15730-15749 Msa1451200:intron 40.0%
! AGTGGCATGACCTTTTGTAA+AGG + tig0033260:15872-15891 None:intergenic 40.0%
!! CAACTTGCTACACTACATAG+TGG + tig0033260:15890-15909 None:intergenic 40.0%
CACTATGTAGTGTAGCAAGT+TGG - tig0033260:15888-15907 Msa1451200:intron 40.0%
ACTTATGCAGATGATGTCCA+TGG - tig0033260:15944-15963 Msa1451200:intron 40.0%
CTTATGCAGATGATGTCCAT+GGG - tig0033260:15945-15964 Msa1451200:intron 40.0%
ATGGTACCTATGATGTTTCC+TGG - tig0033260:15975-15994 Msa1451200:intron 40.0%
TGGATTCCAGGAAACATCAT+AGG + tig0033260:15984-16003 None:intergenic 40.0%
GTATATGCCAACAGTTGGAA+TGG - tig0033260:16007-16026 Msa1451200:intron 40.0%
CCGGATAACATATTGGGAAA+TGG + tig0033260:16077-16096 None:intergenic 40.0%
GCAGAACCGGATAACATATT+GGG + tig0033260:16083-16102 None:intergenic 40.0%
AGCAGAACCGGATAACATAT+TGG + tig0033260:16084-16103 None:intergenic 40.0%
AATAATGTGATCACCTCAGC+TGG - tig0033260:16212-16231 Msa1451200:intron 40.0%
AATTGAAACTGCATCTGGTG+GGG + tig0033260:16302-16321 None:intergenic 40.0%
CAATTGAAACTGCATCTGGT+GGG + tig0033260:16303-16322 None:intergenic 40.0%
TCAATTGAAACTGCATCTGG+TGG + tig0033260:16304-16323 None:intergenic 40.0%
GCATCAATTGAAACTGCATC+TGG + tig0033260:16307-16326 None:intergenic 40.0%
GATGCAGTTTCAATTGATGC+AGG - tig0033260:16307-16326 Msa1451200:intron 40.0%
TTGTTGCACATGAGATCCAT+TGG - tig0033260:16389-16408 Msa1451200:intron 40.0%
!! ATAATATATGTGGTGGTGGC+AGG + tig0033260:16419-16438 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0033260:16691-16710 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - tig0033260:16691-16710 Msa1451200:CDS 40.0%
GATAAGGCAATTTACCTGAC+TGG + tig0033260:16982-17001 None:intergenic 40.0%
ATAGCTCTTGTCCTGTGTTA+TGG - tig0033260:17057-17076 Msa1451200:CDS 40.0%
TAGCTCTTGTCCTGTGTTAT+GGG - tig0033260:17058-17077 Msa1451200:CDS 40.0%
TGATTGTTTCAATCAAGGGC+TGG - tig0033260:17258-17277 Msa1451200:CDS 40.0%
TTGGCATACTGTATTAGGAG+TGG + tig0033260:17453-17472 None:intergenic 40.0%
CAGTGCAGATGATGAGATCA+TGG - tig0033260:12556-12575 Msa1451200:CDS 45.0%
! TTCTTCAGATGACGGTGGTT+TGG + tig0033260:12620-12639 None:intergenic 45.0%
GCAGTGGTTTCTTCAGATGA+CGG + tig0033260:12628-12647 None:intergenic 45.0%
TCATCTGAAGAAACCACTGC+CGG - tig0033260:12628-12647 Msa1451200:intron 45.0%
! GAATCGTCGGAGTTTTTCAC+CGG + tig0033260:12650-12669 None:intergenic 45.0%
! CTGTTGTTATTAACCGTCGG+CGG + tig0033260:12827-12846 None:intergenic 45.0%
TTCGCAAAGTACGCGAAGTT+CGG + tig0033260:12935-12954 None:intergenic 45.0%
TTCAAAATTGACGACGGTCC+TGG + tig0033260:12977-12996 None:intergenic 45.0%
! CAATTTTGAACACTGCTGCG+AGG - tig0033260:12987-13006 Msa1451200:intron 45.0%
GGAGACGGTAAGAAGTTTAG+CGG - tig0033260:13066-13085 Msa1451200:intron 45.0%
! AGTTTAGCGGATCAAACGGA+AGG - tig0033260:13079-13098 Msa1451200:intron 45.0%
! TCGGCAACTTTTGATGAACC+GGG - tig0033260:13124-13143 Msa1451200:intron 45.0%
TAGCAGTGAAGAAGCTGAAC+CGG - tig0033260:13156-13175 Msa1451200:intron 45.0%
CTTCTACTCCCTTCCTCTTT+CGG + tig0033260:13204-13223 None:intergenic 45.0%
AAAGAGGAAGGGAGTAGAAG+CGG - tig0033260:13204-13223 Msa1451200:intron 45.0%
AAAAGTTAAAGCAGCGGCGT+GGG + tig0033260:13321-13340 None:intergenic 45.0%
!!! GGCCGCTTTTATGAAAGCTA+CGG + tig0033260:13382-13401 None:intergenic 45.0%
GGTTGCATGGCAAGAAGAAT+TGG - tig0033260:13558-13577 Msa1451200:CDS 45.0%
GACTTTACCACTTGGGCATA+TGG - tig0033260:13836-13855 Msa1451200:CDS 45.0%
TAAAGTGTAAGGGTAGGGGT+AGG - tig0033260:13861-13880 Msa1451200:CDS 45.0%
AAAGTGTAAGGGTAGGGGTA+GGG - tig0033260:13862-13881 Msa1451200:CDS 45.0%
AGAACTTTAGTCCAGCTTGG+TGG + tig0033260:14065-14084 None:intergenic 45.0%
TTGTGGAGGTTGAATAGGCA+GGG - tig0033260:14211-14230 Msa1451200:intron 45.0%
ACCGCTTATGCCAATTGCTA+AGG + tig0033260:14252-14271 None:intergenic 45.0%
CCGATGAAGCAGGAAAAGTT+TGG - tig0033260:14280-14299 Msa1451200:intron 45.0%
! GTCTGACAAAGCATCTATGC+TGG - tig0033260:15287-15306 Msa1451200:intron 45.0%
ATAAAGACACTTGGGGAGGA+AGG + tig0033260:15600-15619 None:intergenic 45.0%
AGCTATAAAGACACTTGGGG+AGG + tig0033260:15604-15623 None:intergenic 45.0%
!!! TAGCTTCCAAAGGTTTTGGG+AGG - tig0033260:15619-15638 Msa1451200:intron 45.0%
!!! TTCCAAAGGTTTTGGGAGGA+TGG - tig0033260:15623-15642 Msa1451200:intron 45.0%
!!! TCCAAAGGTTTTGGGAGGAT+GGG - tig0033260:15624-15643 Msa1451200:intron 45.0%
CAGCATCTATGACTGTCTAG+TGG + tig0033260:15762-15781 None:intergenic 45.0%
CAACTGTTGGCATATACTGC+TGG + tig0033260:16004-16023 None:intergenic 45.0%
CAGCAGTATATGCCAACAGT+TGG - tig0033260:16002-16021 Msa1451200:intron 45.0%
CCAACAGTTGGAATGGGAAT+GGG - tig0033260:16014-16033 Msa1451200:intron 45.0%
CAACAGTTGGAATGGGAATG+GGG - tig0033260:16015-16034 Msa1451200:intron 45.0%
AATGGGGATGGGTATGGAAA+TGG - tig0033260:16031-16050 Msa1451200:intron 45.0%
ATGGGGATGGGTATGGAAAT+GGG - tig0033260:16032-16051 Msa1451200:intron 45.0%
ATTCTGGATGAACCAGGTGT+AGG + tig0033260:16170-16189 None:intergenic 45.0%
!! CTGATTTGCTGCTTGCATTC+TGG + tig0033260:16186-16205 None:intergenic 45.0%
CAGAATGCAAGCAGCAAATC+AGG - tig0033260:16184-16203 Msa1451200:intron 45.0%
TGAATCATGTGTTCCAGCTG+AGG + tig0033260:16228-16247 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0033260:16690-16709 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - tig0033260:16690-16709 Msa1451200:CDS 45.0%
!! TTGAAACGGAGGGAGTACTA+TGG - tig0033260:16701-16720 Msa1451200:CDS 45.0%
TGAACCAACCAAATGTCAGC+AGG - tig0033260:16933-16952 Msa1451200:CDS 45.0%
AAGGCAATTTACCTGACTGG+CGG + tig0033260:16979-16998 None:intergenic 45.0%
TGTCCTGTGTTATGGGTTTC+TGG - tig0033260:17065-17084 Msa1451200:CDS 45.0%
TTGGCCTCTGTGTAACGACT+TGG + tig0033260:12601-12620 None:intergenic 50.0%
! GTGGTTTCTTCAGATGACGG+TGG + tig0033260:12625-12644 None:intergenic 50.0%
AACTCCGACGATTCAACTCG+CGG - tig0033260:12656-12675 Msa1451200:intron 50.0%
! TTGTTATTAACCGTCGGCGG+CGG + tig0033260:12824-12843 None:intergenic 50.0%
AATACAAACTCCGACGTCGG+TGG - tig0033260:12850-12869 Msa1451200:intron 50.0%
TTCGCGTACTTTGCGAAGCA+CGG - tig0033260:12938-12957 Msa1451200:intron 50.0%
TGATACACCAGCTGTGATGC+CGG - tig0033260:13033-13052 Msa1451200:intron 50.0%
! GCAACTTTTGATGAACCGGG+CGG - tig0033260:13127-13146 Msa1451200:intron 50.0%
AGTGAAGAAGCTGAACCGGT+TGG - tig0033260:13160-13179 Msa1451200:intron 50.0%
GTGAAGAAGCTGAACCGGTT+GGG - tig0033260:13161-13180 Msa1451200:intron 50.0%
GGAATGGGAATATCAGAGCG+AGG - tig0033260:13228-13247 Msa1451200:intron 50.0%
CAAAAGTTAAAGCAGCGGCG+TGG + tig0033260:13322-13341 None:intergenic 50.0%
!! CACGCCGCTGCTTTAACTTT+TGG - tig0033260:13320-13339 Msa1451200:intron 50.0%
TTGCTCACACTATGTACGGC+TGG + tig0033260:13511-13530 None:intergenic 50.0%
TCCAGTAGCGTATGGTTGCA+TGG - tig0033260:13545-13564 Msa1451200:CDS 50.0%
GTTGTGGAGGTTGAATAGGC+AGG - tig0033260:14210-14229 Msa1451200:intron 50.0%
GTGATACTTCCCGATGAAGC+AGG - tig0033260:14270-14289 Msa1451200:intron 50.0%
GCATTTGGGGAGAAGACTTG+AGG - tig0033260:14507-14526 Msa1451200:intron 50.0%
! AAAGAGATCTCGTGCTGCTG+AGG - tig0033260:14970-14989 Msa1451200:intron 50.0%
ACCCATCCTCCCAAAACCTT+TGG + tig0033260:15628-15647 None:intergenic 50.0%
CAGATGATGTCCATGGGATG+TGG - tig0033260:15951-15970 Msa1451200:intron 50.0%
GGCATATACTGCTGGATTCC+AGG + tig0033260:15996-16015 None:intergenic 50.0%
GCCAACAGTTGGAATGGGAA+TGG - tig0033260:16013-16032 Msa1451200:intron 50.0%
CCCATTCCCATTCCAACTGT+TGG + tig0033260:16017-16036 None:intergenic 50.0%
AGTTGGAATGGGAATGGGGA+TGG - tig0033260:16019-16038 Msa1451200:intron 50.0%
GTTGGAATGGGAATGGGGAT+GGG - tig0033260:16020-16039 Msa1451200:intron 50.0%
AATGGGAATGGGGATGGGTA+TGG - tig0033260:16025-16044 Msa1451200:intron 50.0%
GAACCTTGGTCCCAAATTCG+CGG + tig0033260:16117-16136 None:intergenic 50.0%
!! AAAGGAGGCATCACGAACCT+TGG + tig0033260:16131-16150 None:intergenic 50.0%
GAACCAGGTGTAGGAACATG+CGG + tig0033260:16161-16180 None:intergenic 50.0%
GCTTGCATTCTGGATGAACC+AGG + tig0033260:16176-16195 None:intergenic 50.0%
TCAAGAGGCCTGCTGACATT+TGG + tig0033260:16944-16963 None:intergenic 50.0%
!! CGGGTTTCTGGTTTCTCAAG+AGG + tig0033260:16959-16978 None:intergenic 50.0%
AGGCAATTTACCTGACTGGC+GGG + tig0033260:16978-16997 None:intergenic 50.0%
GCTCCAGAAACCCATAACAC+AGG + tig0033260:17071-17090 None:intergenic 50.0%
AGCACAGTGACTTCCAGATC+TGG - tig0033260:17088-17107 Msa1451200:CDS 50.0%
ACGGCCAAGTCGTTACACAG+AGG - tig0033260:12594-12613 Msa1451200:intron 55.0%
! TCGGAGTTTTTCACCGGCAG+TGG + tig0033260:12644-12663 None:intergenic 55.0%
TGTTATTAACCGTCGGCGGC+GGG + tig0033260:12823-12842 None:intergenic 55.0%
!! TACGCGAAGTTCGGTGTCTC+AGG + tig0033260:12926-12945 None:intergenic 55.0%
AATTGACGACGGTCCTGGCT+CGG + tig0033260:12972-12991 None:intergenic 55.0%
TGCTGCGAGGGAATCAACAG+TGG - tig0033260:13000-13019 Msa1451200:intron 55.0%
TGCGAGGGAATCAACAGTGG+TGG - tig0033260:13003-13022 Msa1451200:intron 55.0%
AACGGAAGGAGACACCGAAG+TGG - tig0033260:13093-13112 Msa1451200:intron 55.0%
! TCACTGCTACTTGAACCGCC+CGG + tig0033260:13145-13164 None:intergenic 55.0%
AGAAGCTGAACCGGTTGGGA+AGG - tig0033260:13165-13184 Msa1451200:intron 55.0%
TGAACCGGTTGGGAAGGTAG+CGG - tig0033260:13171-13190 Msa1451200:intron 55.0%
GAGCAGGACCGAAAGAGGAA+GGG - tig0033260:13193-13212 Msa1451200:intron 55.0%
AGGGAGTAGAAGCGGAGGAA+TGG - tig0033260:13212-13231 Msa1451200:intron 55.0%
GGGAGTAGAAGCGGAGGAAT+GGG - tig0033260:13213-13232 Msa1451200:intron 55.0%
GCCATGCAACCATACGCTAC+TGG + tig0033260:13549-13568 None:intergenic 55.0%
GGGTAGGGTGATGTTTGAGC+AGG - tig0033260:13877-13896 Msa1451200:CDS 55.0%
!! CTATGCAGAGGCGTCGTGAT+CGG - tig0033260:15097-15116 Msa1451200:intron 55.0%
GTCGCTGCAGTTACAAGTGC+AGG - tig0033260:15332-15351 Msa1451200:intron 55.0%
AGCTTGCACCATGCCACCAT+CGG - tig0033260:15522-15541 Msa1451200:intron 55.0%
AATGTTCCACCACAGGCCGA+TGG + tig0033260:15541-15560 None:intergenic 55.0%
GATGTCCATGGGATGTGGCA+TGG - tig0033260:15956-15975 Msa1451200:intron 55.0%
AGGTACCATGCCACATCCCA+TGG + tig0033260:15964-15983 None:intergenic 55.0%
TTTGCCTGCAGCCGCGAATT+TGG - tig0033260:16103-16122 Msa1451200:intron 55.0%
TTGCCTGCAGCCGCGAATTT+GGG - tig0033260:16104-16123 Msa1451200:intron 55.0%
ACATGCGGCATGTGGAAAGG+AGG + tig0033260:16146-16165 None:intergenic 55.0%
GGAACATGCGGCATGTGGAA+AGG + tig0033260:16149-16168 None:intergenic 55.0%
GTGTAGGAACATGCGGCATG+TGG + tig0033260:16154-16173 None:intergenic 55.0%
ATGCCGCATGTTCCTACACC+TGG - tig0033260:16155-16174 Msa1451200:intron 55.0%
! GGTGGTGGCAGGATATCCAA+TGG + tig0033260:16408-16427 None:intergenic 55.0%
GAGGCCTGCTGACATTTGGT+TGG + tig0033260:16940-16959 None:intergenic 55.0%
AAACCAGAAACCCGCCAGTC+AGG - tig0033260:16965-16984 Msa1451200:CDS 55.0%
!! TTACCTGACTGGCGGGTTTC+TGG + tig0033260:16971-16990 None:intergenic 55.0%
!! TCAAGGGCTGGCTATGCAGA+TGG - tig0033260:17270-17289 Msa1451200:CDS 55.0%
GGAGTTCTTGCGTGCATTGC+AGG - tig0033260:17415-17434 Msa1451200:CDS 55.0%
TCCGACGATTCAACTCGCGG+CGG - tig0033260:12659-12678 Msa1451200:intron 60.0%
! TCCGCCGCGAGTTGAATCGT+CGG + tig0033260:12663-12682 None:intergenic 60.0%
!! CGGCGGGTTAAGGAAATCGG+TGG + tig0033260:12807-12826 None:intergenic 60.0%
!! CGGCGGCGGGTTAAGGAAAT+CGG + tig0033260:12810-12829 None:intergenic 60.0%
TTTCCTTAACCCGCCGCCGA+CGG - tig0033260:12811-12830 Msa1451200:intron 60.0%
CGAGAAGGAACCACCGACGT+CGG + tig0033260:12863-12882 None:intergenic 60.0%
GGGGGAATTGGAGGACGAGA+AGG + tig0033260:12878-12897 None:intergenic 60.0%
CACGGTGTAAGAACCGAGCC+AGG - tig0033260:12956-12975 Msa1451200:intron 60.0%
TACACCAGCTGTGATGCCGG+CGG - tig0033260:13036-13055 Msa1451200:intron 60.0%
! TGTGATGCCGGCGGCGTTTT+CGG - tig0033260:13045-13064 Msa1451200:intron 60.0%
GGAAGGAGACACCGAAGTGG+CGG - tig0033260:13096-13115 Msa1451200:intron 60.0%
CACCGAAGTGGCGGTGGTTT+CGG - tig0033260:13105-13124 Msa1451200:intron 60.0%
TGCCGAAACCACCGCCACTT+CGG + tig0033260:13110-13129 None:intergenic 60.0%
TGCTCCGCTACCTTCCCAAC+CGG + tig0033260:13178-13197 None:intergenic 60.0%
TAGCGGAGCAGGACCGAAAG+AGG - tig0033260:13188-13207 Msa1451200:intron 60.0%
GGAGCAGGACCGAAAGAGGA+AGG - tig0033260:13192-13211 Msa1451200:intron 60.0%
GAGGAAGGGAGTAGAAGCGG+AGG - tig0033260:13207-13226 Msa1451200:intron 60.0%
AAAAGCGGCCATACCAGCCG+TGG - tig0033260:13392-13411 Msa1451200:intron 60.0%
ATGTGCAGCCACGGCTGGTA+TGG + tig0033260:13403-13422 None:intergenic 60.0%
ATACCAGCCGTGGCTGCACA+TGG - tig0033260:13402-13421 Msa1451200:intron 60.0%
CTGCATGTGAGCCACCAAGC+TGG - tig0033260:14051-14070 Msa1451200:intron 60.0%
GGCTGCAGGCAAAGCAGAAC+CGG + tig0033260:16096-16115 None:intergenic 60.0%
! CAGCCGCGAATTTGGGACCA+AGG - tig0033260:16111-16130 Msa1451200:intron 60.0%
GACGGGACAGAGCACAAGCG+AGG + tig0033260:12156-12175 None:intergenic 65.0%
GACGATTCAACTCGCGGCGG+AGG - tig0033260:12662-12681 Msa1451200:intron 65.0%
TCGCGGCGGAGGAGCTTCAT+CGG - tig0033260:12673-12692 Msa1451200:intron 65.0%
CGGAGGAGCTTCATCGGCGA+GGG - tig0033260:12679-12698 Msa1451200:intron 65.0%
!! TAACCGTCGGCGGCGGGTTA+AGG + tig0033260:12817-12836 None:intergenic 65.0%
GTCCTCCAATTCCCCCGCCA+CGG - tig0033260:12882-12901 Msa1451200:intron 65.0%
! ATCCTCCGTGGCGGGGGAAT+TGG + tig0033260:12890-12909 None:intergenic 65.0%
ATTCCCCCGCCACGGAGGAT+AGG - tig0033260:12890-12909 Msa1451200:CDS 65.0%
TTCCCCCGCCACGGAGGATA+GGG - tig0033260:12891-12910 Msa1451200:CDS 65.0%
ACGTGCCCTATCCTCCGTGG+CGG + tig0033260:12899-12918 None:intergenic 65.0%
TGCACGTGCCCTATCCTCCG+TGG + tig0033260:12902-12921 None:intergenic 65.0%
ACCGTCTCCGAAAACGCCGC+CGG + tig0033260:13055-13074 None:intergenic 65.0%
AGGAGACACCGAAGTGGCGG+TGG - tig0033260:13099-13118 Msa1451200:intron 65.0%
!! GGTTGGGAAGGTAGCGGAGC+AGG - tig0033260:13177-13196 Msa1451200:intron 65.0%
AAGCCATGTGCAGCCACGGC+TGG + tig0033260:13408-13427 None:intergenic 65.0%
GGCGAAGCCATGTGCAGCCA+CGG + tig0033260:13412-13431 None:intergenic 65.0%
ACCATGCCACCATCGGCCTG+TGG - tig0033260:15529-15548 Msa1451200:intron 65.0%
! ACCACAGGCCGATGGTGGCA+TGG + tig0033260:15533-15552 None:intergenic 65.0%
ATGCCACCATCGGCCTGTGG+TGG - tig0033260:15532-15551 Msa1451200:intron 65.0%
GTTCCACCACAGGCCGATGG+TGG + tig0033260:15538-15557 None:intergenic 65.0%
GGTCCCAAATTCGCGGCTGC+AGG + tig0033260:16110-16129 None:intergenic 65.0%
GCGGAGGAGCTTCATCGGCG+AGG - tig0033260:12678-12697 Msa1451200:intron 70.0%
! CTCCGTGGCGGGGGAATTGG+AGG + tig0033260:12887-12906 None:intergenic 70.0%
CTCCAATTCCCCCGCCACGG+AGG - tig0033260:12885-12904 Msa1451200:intron 70.0%
TGCCCTATCCTCCGTGGCGG+GGG + tig0033260:12896-12915 None:intergenic 70.0%
GTGCCCTATCCTCCGTGGCG+GGG + tig0033260:12897-12916 None:intergenic 70.0%
CGTGCCCTATCCTCCGTGGC+GGG + tig0033260:12898-12917 None:intergenic 70.0%
AACGCCGCCGGCATCACAGC+TGG + tig0033260:13043-13062 None:intergenic 70.0%
! GCCGGCGGCGTTTTCGGAGA+CGG - tig0033260:13051-13070 Msa1451200:intron 70.0%
Chromosome Type Strat End Strand Name
tig0033260 gene 12120 17752 12120 ID=Msa1451200;Name=Msa1451200
tig0033260 mRNA 12120 17752 12120 ID=Msa1451200-mRNA-1;Parent=Msa1451200;Name=Msa1451200-mRNA-1;_AED=0.25;_eAED=0.25;_QI=281|0.77|0.8|1|1|1|10|271|549
tig0033260 exon 12120 12435 12120 ID=Msa1451200-mRNA-1:exon:17890;Parent=Msa1451200-mRNA-1
tig0033260 exon 12516 12597 12516 ID=Msa1451200-mRNA-1:exon:17889;Parent=Msa1451200-mRNA-1
tig0033260 exon 12742 12811 12742 ID=Msa1451200-mRNA-1:exon:17888;Parent=Msa1451200-mRNA-1
tig0033260 exon 12886 12949 12886 ID=Msa1451200-mRNA-1:exon:17887;Parent=Msa1451200-mRNA-1
tig0033260 exon 13544 13936 13544 ID=Msa1451200-mRNA-1:exon:17886;Parent=Msa1451200-mRNA-1
tig0033260 exon 14519 14584 14519 ID=Msa1451200-mRNA-1:exon:17885;Parent=Msa1451200-mRNA-1
tig0033260 exon 14702 14767 14702 ID=Msa1451200-mRNA-1:exon:17884;Parent=Msa1451200-mRNA-1
tig0033260 exon 14860 14955 14860 ID=Msa1451200-mRNA-1:exon:17883;Parent=Msa1451200-mRNA-1
tig0033260 exon 16623 17313 16623 ID=Msa1451200-mRNA-1:exon:17882;Parent=Msa1451200-mRNA-1
tig0033260 exon 17395 17752 17395 ID=Msa1451200-mRNA-1:exon:17881;Parent=Msa1451200-mRNA-1
tig0033260 five_prime_UTR 17472 17752 17472 ID=Msa1451200-mRNA-1:five_prime_utr;Parent=Msa1451200-mRNA-1
tig0033260 CDS 17395 17471 17395 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 16623 17313 16623 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 14860 14955 14860 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 14702 14767 14702 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 14519 14584 14519 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 13544 13936 13544 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 12886 12949 12886 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 12742 12811 12742 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 12516 12597 12516 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 CDS 12391 12435 12391 ID=Msa1451200-mRNA-1:cds;Parent=Msa1451200-mRNA-1
tig0033260 three_prime_UTR 12120 12390 12120 ID=Msa1451200-mRNA-1:three_prime_utr;Parent=Msa1451200-mRNA-1
Gene Sequence

>Msa1451200

ATGAACTACTGCGTTTCATATTTCGAATCTCAAATGGATCAACAAGCAGGATTACCTCGTCCTAAGAAACCAATCATTGCAGATGATGAGATCATGGAGCTGTTATGGAAAAACGGCCAAGTCGTTACACAGAGGCCAAACCACCGTCATCTGAAGAAACCACTGCCGGTGAAAAACTCCGACGATTCAACTCGCGGCGGAGGAGCTTCATCGGCGAGGGAGATTCGACCAGTAGAAAACTACAATCAATATCTCTTCATGCAAGAAAATGAAATGGCTTCATGGCTTCATTACGATGATTCTCCTTTCGAACAAACCTTTTCCACCGATTTCCTTAACCCGCCGCCGACGGTTAATAACAACAGTACAATACAAACTCCGACGTCGGTGGTTCCTTCTCGTCCTCCAATTCCCCCGCCACGGAGGATAGGGCACGTGCAGCCTGAGACACCGAACTTCGCGTACTTTGCGAAGCACGGTGTAAGAACCGAGCCAGGACCGTCGTCAATTTTGAACACTGCTGCGAGGGAATCAACAGTGGTGGATTCGTGTGATACACCAGCTGTGATGCCGGCGGCGTTTTCGGAGACGGTAAGAAGTTTAGCGGATCAAACGGAAGGAGACACCGAAGTGGCGGTGGTTTCGGCAACTTTTGATGAACCGGGCGGTTCAAGTAGCAGTGAAGAAGCTGAACCGGTTGGGAAGGTAGCGGAGCAGGACCGAAAGAGGAAGGGAGTAGAAGCGGAGGAATGGGAATATCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCCAAAAAAATATCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAAAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCATCTATGCTGGATGAAGCAATTGATTACTTGAAGTCGCTGCAGTTACAAGTGCAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAGTTGGAATGGGAATGGGGATGGGTATGGAAATGGGAATAAACAGACCAGTAATGCCATTTCCCAATATGTTATCCGGTTCTGCTTTGCCTGCAGCCGCGAATTTGGGACCAAGGTTCGTGATGCCTCCTTTCCACATGCCGCATGTTCCTACACCTGGTTCATCCAGAATGCAAGCAGCAAATCAGGTAGATAATAATGTGATCACCTCAGCTGGAACACATGATTCAAATCAGTCACGTATCCCAAATTTCAGTGATCCTTATCAACAATATCTTGGACCCCACCAGATGCAGTTTCAATTGATGCAGAATCAAGCAATGAACCAACCAAATGTCAGCAGGCCTCTTGAGAAACCAGAAACCCGCCAGTCAGCTCTTGTCCTGTGTTATGGGTTTCTGGAGCACAGTGACTTCCAGATCTGGTTGTTTACCATGTCAATGAAGGCTGGCTATGCAGATGGTGCTTCTTATTATTGTATATTCTCTTATACTACTAGCTCTCAATATGGTACTACTAGTATTATTGTTATATTTTCTGCCACTCCTAATACAGTATGCCAAGTTTTGTAG
Protein sequence

>Msa1451200

MNYCVSYFESQMDQQAGLPRPKKPIIADDEIMELLWKNGQVVTQRPNHRHLKKPLPVKNSDDSTRGGGASSAREIRPVENYNQYLFMQENEMASWLHYDDSPFEQTFSTDFLNPPPTVNNNSTIQTPTSVVPSRPPIPPPRRIGHVQPETPNFAYFAKHGVRTEPGPSSILNTAARESTVVDSCDTPAVMPAAFSETVRSLADQTEGDTEVAVVSATFDEPGGSSSSEEAEPVGKVAEQDRKRKGVEAEEWEYQSEDVDFESAEAQKNISGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTVGMGMGMGMEMGINRPVMPFPNMLSGSALPAAANLGPRFVMPPFHMPHVPTPGSSRMQAANQVDNNVITSAGTHDSNQSRIPNFSDPYQQYLGPHQMQFQLMQNQAMNQPNVSRPLEKPETRQSALVLCYGFLEHSDFQIWLFTMSMKAGYADGASYYCIFSYTTSSQYGTTSIIVIFSATPNTVCQVL*