Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612680 | XP_013457042.1 | 98.496 | 133 | 2 | 0 | 1 | 133 | 1 | 133 | 3.70e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612680 | sp|O65426|LOL2_ARATH | 64.407 | 118 | 32 | 3 | 15 | 123 | 25 | 141 | 9.19e-45 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0612680 | TF | C2C2-LSD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038020 | Msa0612680 | -0.805035 | 1.621338e-49 | -8.615850e-47 |
| Msa0055070 | Msa0612680 | -0.810080 | 1.376789e-50 | -8.615850e-47 |
| Msa0064110 | Msa0612680 | -0.811744 | 6.006883e-51 | -8.615850e-47 |
| Msa0076700 | Msa0612680 | -0.835934 | 1.256391e-56 | -8.615850e-47 |
| Msa0085720 | Msa0612680 | -0.853252 | 2.701711e-61 | -8.615850e-47 |
| Msa0092440 | Msa0612680 | -0.835456 | 1.660770e-56 | -8.615850e-47 |
| Msa0101020 | Msa0612680 | -0.810099 | 1.363946e-50 | -8.615850e-47 |
| Msa0612680 | Msa0625840 | 0.802860 | 4.591639e-49 | -8.615850e-47 |
| Msa0612680 | Msa0626990 | -0.822941 | 1.808951e-53 | -8.615850e-47 |
| Msa0612680 | Msa0627350 | -0.818225 | 2.190744e-52 | -8.615850e-47 |
| Msa0612680 | Msa0653320 | 0.927506 | 1.069402e-91 | -8.615850e-47 |
| Msa0612680 | Msa0679550 | -0.809450 | 1.880901e-50 | -8.615850e-47 |
| Msa0612680 | Msa0724950 | -0.836454 | 9.267717e-57 | -8.615850e-47 |
| Msa0612680 | Msa0741160 | -0.803920 | 2.768585e-49 | -8.615850e-47 |
| Msa0612680 | Msa0750950 | -0.809522 | 1.814983e-50 | -8.615850e-47 |
| Msa0612680 | Msa0763080 | -0.823459 | 1.369232e-53 | -8.615850e-47 |
| Msa0612680 | Msa0780280 | -0.809279 | 2.046590e-50 | -8.615850e-47 |
| Msa0612680 | Msa0803590 | -0.810716 | 1.003905e-50 | -8.615850e-47 |
| Msa0612680 | Msa0805420 | -0.800900 | 1.160143e-48 | -8.615850e-47 |
| Msa0612680 | Msa0831150 | -0.821165 | 4.668373e-53 | -8.615850e-47 |
| Msa0612680 | Msa0845070 | -0.843298 | 1.526743e-58 | -8.615850e-47 |
| Msa0612680 | Msa0861830 | -0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0612680 | Msa0930820 | -0.815423 | 9.316782e-52 | -8.615850e-47 |
| Msa0612680 | Msa0981310 | -0.804178 | 2.446594e-49 | -8.615850e-47 |
| Msa0612680 | Msa1008750 | -0.800537 | 1.375609e-48 | -8.615850e-47 |
| Msa0612680 | Msa1072530 | 0.833810 | 4.306921e-56 | -8.615850e-47 |
| Msa0612680 | Msa1109820 | -0.825914 | 3.614489e-54 | -8.615850e-47 |
| Msa0612680 | Msa1133570 | -0.846348 | 2.298934e-59 | -8.615850e-47 |
| Msa0612680 | Msa1158660 | -0.804819 | 1.798423e-49 | -8.615850e-47 |
| Msa0612680 | Msa1174310 | -0.852264 | 5.172658e-61 | -8.615850e-47 |
| Msa0612680 | Msa1235400 | -0.835400 | 1.715206e-56 | -8.615850e-47 |
| Msa0612680 | Msa1276510 | -0.810452 | 1.144811e-50 | -8.615850e-47 |
| Msa0612680 | Msa1307550 | -0.809938 | 1.477636e-50 | -8.615850e-47 |
| Msa0612680 | Msa1314770 | -0.840783 | 7.061337e-58 | -8.615850e-47 |
| Msa0612680 | Msa1335710 | -0.802557 | 5.300878e-49 | -8.615850e-47 |
| Msa0612680 | Msa1373350 | -0.823323 | 1.473218e-53 | -8.615850e-47 |
| Msa0612680 | Msa1396010 | 0.800571 | 1.353827e-48 | -8.615850e-47 |
| Msa0612680 | Msa1400070 | -0.829959 | 3.843267e-55 | -8.615850e-47 |
| Msa0612680 | Msa1404240 | 0.824404 | 8.221595e-54 | -8.615850e-47 |
| Msa0612680 | Msa1407650 | -0.824123 | 9.571060e-54 | -8.615850e-47 |
| Msa0612680 | Msa1422840 | -0.801150 | 1.031120e-48 | -8.615850e-47 |
| Msa0612680 | Msa1445220 | -0.830452 | 2.913812e-55 | -8.615850e-47 |
| Msa0612680 | Msa1449350 | 0.801036 | 1.088160e-48 | -8.615850e-47 |
| Msa0124550 | Msa0612680 | -0.847379 | 1.200368e-59 | -8.615850e-47 |
| Msa0175050 | Msa0612680 | -0.844150 | 9.034098e-59 | -8.615850e-47 |
| Msa0183010 | Msa0612680 | 0.812270 | 4.612325e-51 | -8.615850e-47 |
| Msa0188050 | Msa0612680 | -0.801283 | 9.688936e-49 | -8.615850e-47 |
| Msa0193540 | Msa0612680 | -0.801720 | 7.881864e-49 | -8.615850e-47 |
| Msa0388030 | Msa0612680 | 0.835914 | 1.271263e-56 | -8.615850e-47 |
| Msa0390960 | Msa0612680 | -0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0417650 | Msa0612680 | -0.812653 | 3.804826e-51 | -8.615850e-47 |
| Msa0417730 | Msa0612680 | -0.814207 | 1.732398e-51 | -8.615850e-47 |
| Msa0239690 | Msa0612680 | -0.807176 | 5.744375e-50 | -8.615850e-47 |
| Msa0266240 | Msa0612680 | -0.824327 | 8.569622e-54 | -8.615850e-47 |
| Msa0269520 | Msa0612680 | -0.836045 | 1.177621e-56 | -8.615850e-47 |
| Msa0274630 | Msa0612680 | -0.805000 | 1.649107e-49 | -8.615850e-47 |
| Msa0314060 | Msa0612680 | -0.814435 | 1.542666e-51 | -8.615850e-47 |
| Msa0530650 | Msa0612680 | -0.817853 | 2.658572e-52 | -8.615850e-47 |
| Msa0557950 | Msa0612680 | 0.930583 | 1.326646e-93 | -8.615850e-47 |
| Msa0573040 | Msa0612680 | -0.824820 | 6.562450e-54 | -8.615850e-47 |
| Msa0587190 | Msa0612680 | -0.816834 | 4.507583e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612680 | MtrunA17_Chr4g0047341 | 96.491 | 114 | 4 | 0 | 1 | 114 | 1 | 114 | 5.10e-78 | 227 |
| Msa0612680 | MtrunA17_Chr4g0054701 | 56.098 | 82 | 34 | 1 | 32 | 113 | 64 | 143 | 6.76e-27 | 97.8 |
| Msa0612680 | MtrunA17_Chr2g0303181 | 43.434 | 99 | 54 | 1 | 31 | 127 | 33 | 131 | 2.04e-25 | 94.7 |
| Msa0612680 | MtrunA17_Chr8g0381011 | 49.425 | 87 | 42 | 1 | 32 | 118 | 35 | 119 | 9.01e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612680 | AT4G21610.1 | 64.407 | 118 | 32 | 3 | 15 | 123 | 25 | 141 | 9.34e-46 | 146 |
| Msa0612680 | AT4G21610.2 | 62.617 | 107 | 30 | 3 | 15 | 112 | 25 | 130 | 1.68e-37 | 125 |
| Msa0612680 | AT1G32540.3 | 54.878 | 82 | 35 | 1 | 32 | 113 | 65 | 144 | 1.67e-26 | 97.4 |
| Msa0612680 | AT1G32540.2 | 54.878 | 82 | 35 | 1 | 32 | 113 | 65 | 144 | 1.67e-26 | 97.4 |
| Msa0612680 | AT1G32540.1 | 54.878 | 82 | 35 | 1 | 32 | 113 | 98 | 177 | 1.83e-26 | 98.2 |
| Msa0612680 | AT1G32540.5 | 57.143 | 77 | 31 | 1 | 32 | 108 | 65 | 139 | 8.60e-25 | 93.2 |
| Msa0612680 | AT4G20380.6 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0612680 | AT4G20380.3 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0612680 | AT4G20380.4 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0612680 | AT4G20380.1 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0612680 | AT4G20380.5 | 44.944 | 89 | 40 | 1 | 40 | 119 | 43 | 131 | 3.08e-22 | 87.0 |
| Msa0612680 | AT4G20380.2 | 44.944 | 89 | 40 | 1 | 40 | 119 | 48 | 136 | 3.48e-22 | 87.0 |
| Msa0612680 | AT4G20380.7 | 44.944 | 89 | 40 | 1 | 40 | 119 | 48 | 136 | 3.48e-22 | 87.0 |
| Msa0612680 | AT4G20380.9 | 45.122 | 82 | 36 | 1 | 40 | 112 | 43 | 124 | 5.08e-20 | 80.1 |
| Msa0612680 | AT4G20380.9 | 44.776 | 67 | 34 | 1 | 42 | 105 | 4 | 70 | 1.32e-13 | 63.5 |
| Msa0612680 | AT4G20380.8 | 35.652 | 115 | 39 | 1 | 40 | 119 | 43 | 157 | 5.59e-19 | 79.3 |
| Msa0612680 | AT4G20380.8 | 44.776 | 67 | 34 | 1 | 42 | 105 | 4 | 70 | 1.17e-13 | 65.1 |
| Msa0612680 | AT1G32540.4 | 44.872 | 78 | 42 | 1 | 31 | 107 | 23 | 100 | 1.05e-12 | 60.5 |
| Msa0612680 | AT1G32540.6 | 44.872 | 78 | 42 | 1 | 31 | 107 | 23 | 100 | 1.05e-12 | 60.5 |
| Msa0612680 | AT1G32540.7 | 45.833 | 72 | 38 | 1 | 37 | 107 | 62 | 133 | 3.44e-11 | 57.4 |
Find 73 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCCATTGTCCTATTAAC+TGG | 0.181792 | 4_2:+61177757 | Msa0612680:three_prime_UTR |
| CGTCGTCTTCTTTGTTTACT+AGG | 0.247921 | 4_2:-61174539 | None:intergenic |
| GGCCGTGGGCGTTGCGGTGG+GGG | 0.301669 | 4_2:-61174591 | None:intergenic |
| TGGCCGTGGGCGTTGCGGTG+GGG | 0.306898 | 4_2:-61174592 | None:intergenic |
| TGCCGGTTTGTGACAGAAAT+CGG | 0.319178 | 4_2:+61177198 | Msa0612680:CDS |
| AGGCCGCTAACAACCAGATT+TGG | 0.328376 | 4_2:-61177736 | None:intergenic |
| GGTGGCCGTGGGCGTTGCGG+TGG | 0.333387 | 4_2:-61174594 | None:intergenic |
| AGTGACGGTGGCGGTGGCCG+TGG | 0.335089 | 4_2:-61174606 | None:intergenic |
| ACAAGGATGACCCAGTTAAT+AGG | 0.337289 | 4_2:-61177768 | None:intergenic |
| GCATGAACATTTGACATGTT+TGG | 0.343047 | 4_2:-61174940 | None:intergenic |
| GTGGCCGTGGGCGTTGCGGT+GGG | 0.370495 | 4_2:-61174593 | None:intergenic |
| CATTCATAATTTGTTATACA+AGG | 0.375863 | 4_2:-61177785 | None:intergenic |
| TTCCTTCGTCACAGCTGATC+AGG | 0.397948 | 4_2:+61177098 | Msa0612680:intron |
| CTTCTTTGTTTACTAGGTGT+TGG | 0.400108 | 4_2:-61174533 | None:intergenic |
| AACTTGTCAATGTCAAGTTT+TGG | 0.403600 | 4_2:+61177860 | Msa0612680:three_prime_UTR |
| TCTTAAATTTGCAATATGTA+TGG | 0.413042 | 4_2:+61177836 | Msa0612680:three_prime_UTR |
| GGCCGCTAACAACCAGATTT+GGG | 0.413926 | 4_2:-61177735 | None:intergenic |
| TTGTATAACAAATTATGAAT+GGG | 0.416192 | 4_2:+61177787 | Msa0612680:three_prime_UTR |
| AAACCAACTCCTCCCAAATC+TGG | 0.417656 | 4_2:+61177723 | Msa0612680:CDS |
| GCCGGTTTGTGACAGAAATC+GGG | 0.420532 | 4_2:+61177199 | Msa0612680:CDS |
| TGATTATGATGAAATTCAAT+TGG | 0.428793 | 4_2:+61178022 | Msa0612680:three_prime_UTR |
| CTAATACAATGTTGACTGTC+TGG | 0.430906 | 4_2:-61174965 | None:intergenic |
| CTTGTATAACAAATTATGAA+TGG | 0.435470 | 4_2:+61177786 | Msa0612680:three_prime_UTR |
| CATACGGTGCTCCACAAGTT+AGG | 0.437213 | 4_2:+61177166 | Msa0612680:CDS |
| CAACCAGATTTGGGAGGAGT+TGG | 0.440236 | 4_2:-61177726 | None:intergenic |
| GTGACGGTGGCGGTGGCCGT+GGG | 0.451108 | 4_2:-61174605 | None:intergenic |
| CCCCGATTTCTGTCACAAAC+CGG | 0.464843 | 4_2:-61177200 | None:intergenic |
| GATGGGAGTGACGGTGGCGG+TGG | 0.475419 | 4_2:-61174612 | None:intergenic |
| ATAGGTTGCCAACCAGGTGG+CGG | 0.493264 | 4_2:-61174567 | None:intergenic |
| GGCGGTGGCCGTGGGCGTTG+CGG | 0.501640 | 4_2:-61174597 | None:intergenic |
| ATACTATATGACAATATTCA+AGG | 0.505127 | 4_2:-61177946 | None:intergenic |
| ACAGTCAACATTGTATTAGA+AGG | 0.509196 | 4_2:+61174969 | Msa0612680:CDS |
| TAGGTTGCCAACCAGGTGGC+GGG | 0.511813 | 4_2:-61174566 | None:intergenic |
| CATTTGACATGTTTGGCACC+TGG | 0.517148 | 4_2:-61174933 | None:intergenic |
| CTAGAGTACAGGCGAATGGT+TGG | 0.520955 | 4_2:-61178084 | None:intergenic |
| CGCCTGCTTTCGTATCCACC+AGG | 0.522323 | 4_2:+61174915 | Msa0612680:CDS |
| AAGTTAGGTGTTCATCATGC+CGG | 0.527912 | 4_2:+61177181 | Msa0612680:CDS |
| CTAACTTGTGGAGCACCGTA+TGG | 0.535574 | 4_2:-61177165 | None:intergenic |
| CAGACAACAAGCGGCCTCCA+TGG | 0.537061 | 4_2:+61177685 | Msa0612680:CDS |
| CACCTGGTGGATACGAAAGC+AGG | 0.543193 | 4_2:-61174917 | None:intergenic |
| CCGGATGGGAGTGACGGTGG+CGG | 0.550715 | 4_2:-61174615 | None:intergenic |
| TACTATATGACAATATTCAA+GGG | 0.551540 | 4_2:-61177945 | None:intergenic |
| TGTAGTGTGTGAAGAAGTCA+CGG | 0.553499 | 4_2:+61174481 | Msa0612680:five_prime_UTR |
| ACGACGGCCCGCCACCTGGT+TGG | 0.559468 | 4_2:+61174559 | Msa0612680:CDS |
| CCGCCACCGTCACTCCCATC+CGG | 0.560200 | 4_2:+61174615 | Msa0612680:CDS |
| CTCCCAAATCTGGTTGTTAG+CGG | 0.560296 | 4_2:+61177733 | Msa0612680:CDS |
| GACGACGACGGCCCGCCACC+TGG | 0.561082 | 4_2:+61174555 | Msa0612680:CDS |
| TGTCCATTGTCCTATTAACT+GGG | 0.565229 | 4_2:+61177758 | Msa0612680:three_prime_UTR |
| TTGTGCAGGCAGACAACAAG+CGG | 0.571247 | 4_2:+61177676 | Msa0612680:intron |
| GGGATCACGGGAGGAACAGA+AGG | 0.576535 | 4_2:-61177908 | None:intergenic |
| TGTATAACAAATTATGAATG+GGG | 0.579210 | 4_2:+61177788 | Msa0612680:three_prime_UTR |
| TAACTTGTGGAGCACCGTAT+GGG | 0.583052 | 4_2:-61177164 | None:intergenic |
| TTACTTTGTTGTACAGACCA+TGG | 0.588700 | 4_2:-61177702 | None:intergenic |
| AACTGACCGGATGGGAGTGA+CGG | 0.591272 | 4_2:-61174621 | None:intergenic |
| TTCGTCACAGCTGATCAGGT+TGG | 0.596338 | 4_2:+61177102 | Msa0612680:intron |
| CAGGTTGGACAAGTTAAGTG+TGG | 0.602861 | 4_2:+61177117 | Msa0612680:CDS |
| CATGATGAACACCTAACTTG+TGG | 0.604697 | 4_2:-61177177 | None:intergenic |
| TAAATAGCAACTGACCGGAT+GGG | 0.614535 | 4_2:-61174629 | None:intergenic |
| GAATCTAGAGTACAGGCGAA+TGG | 0.615992 | 4_2:-61178088 | None:intergenic |
| AGGTTGGACAAGTTAAGTGT+GGG | 0.628125 | 4_2:+61177118 | Msa0612680:CDS |
| TGACCGGATGGGAGTGACGG+TGG | 0.636305 | 4_2:-61174618 | None:intergenic |
| TTGGAAAAGATAATTAATCA+CGG | 0.641566 | 4_2:-61178065 | None:intergenic |
| TTGACATGTTTGGCACCTGG+TGG | 0.642814 | 4_2:-61174930 | None:intergenic |
| CAGTTAATAGGACAATGGAC+AGG | 0.647351 | 4_2:-61177756 | None:intergenic |
| GGAATAGGTTGCCAACCAGG+TGG | 0.649831 | 4_2:-61174570 | None:intergenic |
| GTATTGCTAATGTACCCATA+CGG | 0.650598 | 4_2:+61177150 | Msa0612680:CDS |
| CCGGTTTGTGACAGAAATCG+GGG | 0.660382 | 4_2:+61177200 | Msa0612680:CDS |
| CGCTAACAACCAGATTTGGG+AGG | 0.672253 | 4_2:-61177732 | None:intergenic |
| TGACCCAGTTAATAGGACAA+TGG | 0.679589 | 4_2:-61177761 | None:intergenic |
| CTGGTGGATACGAAAGCAGG+CGG | 0.684251 | 4_2:-61174914 | None:intergenic |
| GTAGTGTGTGAAGAAGTCAC+GGG | 0.714920 | 4_2:+61174482 | Msa0612680:five_prime_UTR |
| CTTTGTTGTACAGACCATGG+AGG | 0.723748 | 4_2:-61177699 | None:intergenic |
| GTAAACAAAGAAGACGACGA+CGG | 0.734106 | 4_2:+61174543 | Msa0612680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAATAATATATATGTAT+AGG | - | chr4_2:61177397-61177416 | None:intergenic | 10.0% |
| !!! | TATTATTGATTTTATATTGT+TGG | + | chr4_2:61177606-61177625 | Msa0612680:intron | 10.0% |
| !! | AAAATGTCTAATTGAAAATT+TGG | - | chr4_2:61176919-61176938 | None:intergenic | 15.0% |
| !!! | TTTTGACTTAAAAAATTAGA+AGG | - | chr4_2:61177271-61177290 | None:intergenic | 15.0% |
| !! | ATAAAATCAATAATAGCTAT+AGG | - | chr4_2:61177601-61177620 | None:intergenic | 15.0% |
| !! | TTGTATAACAAATTATGAAT+GGG | + | chr4_2:61177787-61177806 | Msa0612680:three_prime_UTR | 15.0% |
| !!! | ATAATGACCAAATATTTTCT+TGG | + | chr4_2:61175862-61175881 | Msa0612680:intron | 20.0% |
| !! | TTCATATTTGAAAATTGTGT+CGG | - | chr4_2:61176021-61176040 | None:intergenic | 20.0% |
| !! | GAAAATTTCATTAACATAAC+AGG | - | chr4_2:61176519-61176538 | None:intergenic | 20.0% |
| !! | ATATTCAACATTGTATTAGA+AGG | + | chr4_2:61176585-61176604 | Msa0612680:intron | 20.0% |
| !! | TTCATAAACAATTACATGAT+TGG | + | chr4_2:61176709-61176728 | Msa0612680:intron | 20.0% |
| !! | AGTAACATTTCTAACAAAAA+AGG | + | chr4_2:61176810-61176829 | Msa0612680:intron | 20.0% |
| !!! | TTCAATTAGACATTTTAGTA+TGG | + | chr4_2:61176923-61176942 | Msa0612680:intron | 20.0% |
| !! | ACATATTACATATTGTTCTA+AGG | + | chr4_2:61177325-61177344 | Msa0612680:intron | 20.0% |
| !!! | CATTCATAATTTGTTATACA+AGG | - | chr4_2:61177788-61177807 | None:intergenic | 20.0% |
| !! | CTTGTATAACAAATTATGAA+TGG | + | chr4_2:61177786-61177805 | Msa0612680:three_prime_UTR | 20.0% |
| !! | TGTATAACAAATTATGAATG+GGG | + | chr4_2:61177788-61177807 | Msa0612680:three_prime_UTR | 20.0% |
| !! | TCTTAAATTTGCAATATGTA+TGG | + | chr4_2:61177836-61177855 | Msa0612680:three_prime_UTR | 20.0% |
| !! | TACTATATGACAATATTCAA+GGG | - | chr4_2:61177948-61177967 | None:intergenic | 20.0% |
| !! | ATACTATATGACAATATTCA+AGG | - | chr4_2:61177949-61177968 | None:intergenic | 20.0% |
| !! | TGATTATGATGAAATTCAAT+TGG | + | chr4_2:61178022-61178041 | Msa0612680:three_prime_UTR | 20.0% |
| !! | TTGGAAAAGATAATTAATCA+CGG | - | chr4_2:61178068-61178087 | None:intergenic | 20.0% |
| ! | GAGAAAAAAAGAGAAGTAAT+AGG | - | chr4_2:61174676-61174695 | None:intergenic | 25.0% |
| ! | CCATAAAAGGTTAAAACTAA+AGG | - | chr4_2:61174806-61174825 | None:intergenic | 25.0% |
| !!! | CCTTTAGTTTTAACCTTTTA+TGG | + | chr4_2:61174803-61174822 | Msa0612680:intron | 25.0% |
| !!! | TCAAATGAATTGGTTTTTTG+TGG | + | chr4_2:61174827-61174846 | Msa0612680:intron | 25.0% |
| !!! | TTTCTAAAAGCTAATTTTCG+AGG | - | chr4_2:61175082-61175101 | None:intergenic | 25.0% |
| !! | ATGAAATTTTCAATGCTCTA+CGG | + | chr4_2:61175343-61175362 | Msa0612680:intron | 25.0% |
| ! | ATCAAAAGTTGAAGATTACA+TGG | + | chr4_2:61176093-61176112 | Msa0612680:intron | 25.0% |
| ! | TCAAAAGTTGAAGATTACAT+GGG | + | chr4_2:61176094-61176113 | Msa0612680:intron | 25.0% |
| ! | AACTTAAAATGCAAGTTTCA+TGG | - | chr4_2:61176657-61176676 | None:intergenic | 25.0% |
| ! | TCATCAAATTCAAATGTGAT+TGG | - | chr4_2:61176881-61176900 | None:intergenic | 25.0% |
| ! | TACTTGTACAAAATATGACA+TGG | + | chr4_2:61177034-61177053 | Msa0612680:intron | 25.0% |
| ! | TACATAAATCAACTTGCAAT+TGG | - | chr4_2:61177306-61177325 | None:intergenic | 25.0% |
| !!! | AGTCTATTTTTCTCTTTGTA+CGG | + | chr4_2:61177433-61177452 | Msa0612680:intron | 25.0% |
| ! | CTTTAAATTATCCAAGTGTA+GGG | + | chr4_2:61177496-61177515 | Msa0612680:intron | 25.0% |
| ! | TTTAAATTATCCAAGTGTAG+GGG | + | chr4_2:61177497-61177516 | Msa0612680:intron | 25.0% |
| CTTCTTTCAAAAAACCACAA+GGG | - | chr4_2:61174453-61174472 | None:intergenic | 30.0% | |
| TCTTCTTTCAAAAAACCACA+AGG | - | chr4_2:61174454-61174473 | None:intergenic | 30.0% | |
| ATGAATAAATAGCAACTGAC+CGG | - | chr4_2:61174637-61174656 | None:intergenic | 30.0% | |
| !! | AAGCTCGTAGCTTTAATATT+TGG | + | chr4_2:61174696-61174715 | Msa0612680:intron | 30.0% |
| !! | AGCTCGTAGCTTTAATATTT+GGG | + | chr4_2:61174697-61174716 | Msa0612680:intron | 30.0% |
| !! | GGTTCAATTATTTCTGAAAG+AGG | + | chr4_2:61174718-61174737 | Msa0612680:intron | 30.0% |
| AACAAAAGCTGTGGAAAAAA+GGG | + | chr4_2:61174741-61174760 | Msa0612680:intron | 30.0% | |
| CAATTCATTTGAGCCATAAA+AGG | - | chr4_2:61174819-61174838 | None:intergenic | 30.0% | |
| ! | CTTTTATGGCTCAAATGAAT+TGG | + | chr4_2:61174817-61174836 | Msa0612680:intron | 30.0% |
| ACAGTCAACATTGTATTAGA+AGG | + | chr4_2:61174969-61174988 | Msa0612680:CDS | 30.0% | |
| AGACATGTTCATGAGAAAAA+AGG | - | chr4_2:61175003-61175022 | None:intergenic | 30.0% | |
| TAGTTGATCTACGAAGATTT+GGG | - | chr4_2:61175250-61175269 | None:intergenic | 30.0% | |
| TGCGATTCAGTTCAATAAAT+CGG | - | chr4_2:61175323-61175342 | None:intergenic | 30.0% | |
| ! | TGAAATTTTCAATGCTCTAC+GGG | + | chr4_2:61175344-61175363 | Msa0612680:intron | 30.0% |
| CTCAAGTTTATATCTCACAT+TGG | + | chr4_2:61175466-61175485 | Msa0612680:intron | 30.0% | |
| TTTGTCCAAAGTACAAACAA+GGG | - | chr4_2:61175538-61175557 | None:intergenic | 30.0% | |
| ATTTGTCCAAAGTACAAACA+AGG | - | chr4_2:61175539-61175558 | None:intergenic | 30.0% | |
| AACAACTATTTCAACATCGA+TGG | + | chr4_2:61175714-61175733 | Msa0612680:intron | 30.0% | |
| TGCAGCTTCAATTTCATTAT+GGG | - | chr4_2:61176132-61176151 | None:intergenic | 30.0% | |
| TTGCAGCTTCAATTTCATTA+TGG | - | chr4_2:61176133-61176152 | None:intergenic | 30.0% | |
| ! | AAACTATCCTCTTTTGTCAA+TGG | - | chr4_2:61176347-61176366 | None:intergenic | 30.0% |
| AGCTAACATGTATAAGATCA+TGG | + | chr4_2:61176370-61176389 | Msa0612680:intron | 30.0% | |
| CAGGAAATTTGATTACAATC+AGG | - | chr4_2:61176500-61176519 | None:intergenic | 30.0% | |
| !!! | GAAACTTGCATTTTAAGTTC+AGG | + | chr4_2:61176658-61176677 | Msa0612680:intron | 30.0% |
| !! | AGTTCAGGTTTTTATACATC+TGG | + | chr4_2:61176673-61176692 | Msa0612680:intron | 30.0% |
| AACTTCCTGGTCATTATAAA+AGG | + | chr4_2:61176833-61176852 | Msa0612680:intron | 30.0% | |
| ACTTCCTGGTCATTATAAAA+GGG | + | chr4_2:61176834-61176853 | Msa0612680:intron | 30.0% | |
| ! | ATTCAAATGTGATTGGTCAT+TGG | - | chr4_2:61176874-61176893 | None:intergenic | 30.0% |
| CCTACACTTGGATAATTTAA+AGG | - | chr4_2:61177498-61177517 | None:intergenic | 30.0% | |
| CCTTTAAATTATCCAAGTGT+AGG | + | chr4_2:61177495-61177514 | Msa0612680:intron | 30.0% | |
| TTAAATTATCCAAGTGTAGG+GGG | + | chr4_2:61177498-61177517 | Msa0612680:intron | 30.0% | |
| TCTTCAGATTGAATGAATAG+AGG | - | chr4_2:61177575-61177594 | None:intergenic | 30.0% | |
| TGAGGATATCAGTGTTTAAA+GGG | - | chr4_2:61177650-61177669 | None:intergenic | 30.0% | |
| ATGAGGATATCAGTGTTTAA+AGG | - | chr4_2:61177651-61177670 | None:intergenic | 30.0% | |
| ! | AACTTGTCAATGTCAAGTTT+TGG | + | chr4_2:61177860-61177879 | Msa0612680:three_prime_UTR | 30.0% |
| AATGAAAAAAAAGGGATCAC+GGG | - | chr4_2:61177923-61177942 | None:intergenic | 30.0% | |
| CAATGAAAAAAAAGGGATCA+CGG | - | chr4_2:61177924-61177943 | None:intergenic | 30.0% | |
| CAAGGGACAATGAAAAAAAA+GGG | - | chr4_2:61177931-61177950 | None:intergenic | 30.0% | |
| TCAAGGGACAATGAAAAAAA+AGG | - | chr4_2:61177932-61177951 | None:intergenic | 30.0% | |
| ! | TTTTCTCTATATGCGTATTC+AGG | - | chr4_2:61177997-61178016 | None:intergenic | 30.0% |
| ! | CTTCTTTGTTTACTAGGTGT+TGG | - | chr4_2:61174536-61174555 | None:intergenic | 35.0% |
| GAACAAAAGCTGTGGAAAAA+AGG | + | chr4_2:61174740-61174759 | Msa0612680:intron | 35.0% | |
| ACAAAAGCTGTGGAAAAAAG+GGG | + | chr4_2:61174742-61174761 | Msa0612680:intron | 35.0% | |
| TTTGATACAGTTGTGTGAAC+AGG | + | chr4_2:61174861-61174880 | Msa0612680:intron | 35.0% | |
| GCATGAACATTTGACATGTT+TGG | - | chr4_2:61174943-61174962 | None:intergenic | 35.0% | |
| ! | CTAATACAATGTTGACTGTC+TGG | - | chr4_2:61174968-61174987 | None:intergenic | 35.0% |
| TTTATTTGAGAATCTCCAGC+TGG | + | chr4_2:61175054-61175073 | Msa0612680:intron | 35.0% | |
| GTAGTTGATCTACGAAGATT+TGG | - | chr4_2:61175251-61175270 | None:intergenic | 35.0% | |
| CTACAACAGATGAACCATAT+CGG | + | chr4_2:61175267-61175286 | Msa0612680:intron | 35.0% | |
| TCAATAAATCGGGGATTGTT+GGG | - | chr4_2:61175312-61175331 | None:intergenic | 35.0% | |
| TTCAATAAATCGGGGATTGT+TGG | - | chr4_2:61175313-61175332 | None:intergenic | 35.0% | |
| CGATTCAGTTCAATAAATCG+GGG | - | chr4_2:61175321-61175340 | None:intergenic | 35.0% | |
| GCGATTCAGTTCAATAAATC+GGG | - | chr4_2:61175322-61175341 | None:intergenic | 35.0% | |
| AAAGAGTGGTTAAGTTCCAT+TGG | + | chr4_2:61175409-61175428 | Msa0612680:intron | 35.0% | |
| GTGAGATATAAACTTGAGAG+AGG | - | chr4_2:61175464-61175483 | None:intergenic | 35.0% | |
| TTGTCCAAAGTACAAACAAG+GGG | - | chr4_2:61175537-61175556 | None:intergenic | 35.0% | |
| GCAAATGATTGGAATGAGAA+TGG | - | chr4_2:61175664-61175683 | None:intergenic | 35.0% | |
| TGAAATAGTTGTTACCGTCT+AGG | - | chr4_2:61175707-61175726 | None:intergenic | 35.0% | |
| CTGGGAACCAAGAAAATATT+TGG | - | chr4_2:61175872-61175891 | None:intergenic | 35.0% | |
| GGTTATAGTTCTCATCTTCT+GGG | - | chr4_2:61175890-61175909 | None:intergenic | 35.0% | |
| TGGTTATAGTTCTCATCTTC+TGG | - | chr4_2:61175891-61175910 | None:intergenic | 35.0% | |
| AGAAGATGAGAACTATAACC+AGG | + | chr4_2:61175890-61175909 | Msa0612680:intron | 35.0% | |
| ACAGGCTACTCCTAAAATTA+GGG | - | chr4_2:61175931-61175950 | None:intergenic | 35.0% | |
| TACAGGCTACTCCTAAAATT+AGG | - | chr4_2:61175932-61175951 | None:intergenic | 35.0% | |
| CATTGTTTGGATATTGCTGT+GGG | - | chr4_2:61175986-61176005 | None:intergenic | 35.0% | |
| ACATTGTTTGGATATTGCTG+TGG | - | chr4_2:61175987-61176006 | None:intergenic | 35.0% | |
| AACAACTCGTTGATCATAGT+TGG | - | chr4_2:61176069-61176088 | None:intergenic | 35.0% | |
| AACTATGATCAACGAGTTGT+TGG | + | chr4_2:61176068-61176087 | Msa0612680:intron | 35.0% | |
| AAAGTTGAAGATTACATGGG+AGG | + | chr4_2:61176097-61176116 | Msa0612680:intron | 35.0% | |
| !! | TTGTATACTCAGCTTTAAGC+TGG | - | chr4_2:61176184-61176203 | None:intergenic | 35.0% |
| AATGATTGACCAAGAACTCA+TGG | + | chr4_2:61176286-61176305 | Msa0612680:intron | 35.0% | |
| TATCATCTTGATCTTCGTCT+TGG | - | chr4_2:61176318-61176337 | None:intergenic | 35.0% | |
| ACAATCAGGCGTTAAACAAA+AGG | - | chr4_2:61176486-61176505 | None:intergenic | 35.0% | |
| CTAACAAAAAAGGAACTTCC+TGG | + | chr4_2:61176820-61176839 | Msa0612680:intron | 35.0% | |
| ! | GTATCCCTTTTATAATGACC+AGG | - | chr4_2:61176841-61176860 | None:intergenic | 35.0% |
| ACATAGCGTATATGCATTCT+TGG | - | chr4_2:61176958-61176977 | None:intergenic | 35.0% | |
| ! | CATGGCATTATTCTTTTGCA+TGG | + | chr4_2:61177052-61177071 | Msa0612680:intron | 35.0% |
| GTATTGCTAATGTACCCATA+CGG | + | chr4_2:61177150-61177169 | Msa0612680:CDS | 35.0% | |
| AAGTTTGACACTTGATGTAG+CGG | + | chr4_2:61177365-61177384 | Msa0612680:intron | 35.0% | |
| TCAGATTGAATGAATAGAGG+CGG | - | chr4_2:61177572-61177591 | None:intergenic | 35.0% | |
| ! | TATCCTCATGATTTTTGTGC+AGG | + | chr4_2:61177662-61177681 | Msa0612680:intron | 35.0% |
| ! | TTACTTTGTTGTACAGACCA+TGG | - | chr4_2:61177705-61177724 | None:intergenic | 35.0% |
| TGTCCATTGTCCTATTAACT+GGG | + | chr4_2:61177758-61177777 | Msa0612680:three_prime_UTR | 35.0% | |
| !! | TGTTTTTACCTAGTCCCTTG+TGG | + | chr4_2:61174436-61174455 | Msa0612680:five_prime_UTR | 40.0% |
| TCAAAAAACCACAAGGGACT+AGG | - | chr4_2:61174447-61174466 | None:intergenic | 40.0% | |
| TGTAGTGTGTGAAGAAGTCA+CGG | + | chr4_2:61174481-61174500 | Msa0612680:five_prime_UTR | 40.0% | |
| ! | CGTCGTCTTCTTTGTTTACT+AGG | - | chr4_2:61174542-61174561 | None:intergenic | 40.0% |
| GTAAACAAAGAAGACGACGA+CGG | + | chr4_2:61174543-61174562 | Msa0612680:CDS | 40.0% | |
| TAAATAGCAACTGACCGGAT+GGG | - | chr4_2:61174632-61174651 | None:intergenic | 40.0% | |
| ATAAATAGCAACTGACCGGA+TGG | - | chr4_2:61174633-61174652 | None:intergenic | 40.0% | |
| TGAAAGAGGAACAAAAGCTG+TGG | + | chr4_2:61174732-61174751 | Msa0612680:intron | 40.0% | |
| TAAAGGAAGCTTCAAGCTTC+AGG | - | chr4_2:61174789-61174808 | None:intergenic | 40.0% | |
| ! | GTGAACAGGTTTTGCTCAAA+TGG | + | chr4_2:61174875-61174894 | Msa0612680:intron | 40.0% |
| ! | GGTTTTGCTCAAATGGTTTG+TGG | + | chr4_2:61174882-61174901 | Msa0612680:intron | 40.0% |
| TATAACCCTGATACCATGTC+AGG | + | chr4_2:61175138-61175157 | Msa0612680:intron | 40.0% | |
| ATCTACGAAGATTTGGGTAG+TGG | - | chr4_2:61175244-61175263 | None:intergenic | 40.0% | |
| GAATGGTGAATGATCCGATA+TGG | - | chr4_2:61175284-61175303 | None:intergenic | 40.0% | |
| ATCGGATCATTCACCATTCT+TGG | + | chr4_2:61175285-61175304 | Msa0612680:intron | 40.0% | |
| ! | ACATAAAGTGGAGGGTGTAA+AGG | - | chr4_2:61175371-61175390 | None:intergenic | 40.0% |
| CCACTTTGACATAAAGTGGA+GGG | - | chr4_2:61175379-61175398 | None:intergenic | 40.0% | |
| CCTCCACTTTATGTCAAAGT+GGG | + | chr4_2:61175377-61175396 | Msa0612680:intron | 40.0% | |
| TGTCCCACTTTGACATAAAG+TGG | - | chr4_2:61175383-61175402 | None:intergenic | 40.0% | |
| !! | GTGGGACATTTTGAAAAGAG+TGG | + | chr4_2:61175395-61175414 | Msa0612680:intron | 40.0% |
| TGTTTATGCCTCAAACAGAG+AGG | + | chr4_2:61175497-61175516 | Msa0612680:intron | 40.0% | |
| GACAAATTTGCAGTCGAGAT+AGG | + | chr4_2:61175552-61175571 | Msa0612680:intron | 40.0% | |
| !! | CTTGAGAGCATTGAGCAATA+GGG | - | chr4_2:61175610-61175629 | None:intergenic | 40.0% |
| AATAGTTGTTACCGTCTAGG+TGG | - | chr4_2:61175704-61175723 | None:intergenic | 40.0% | |
| !! | TCATCAGCCATTTGCTGTTT+GGG | - | chr4_2:61175791-61175810 | None:intergenic | 40.0% |
| !! | TTCATCAGCCATTTGCTGTT+TGG | - | chr4_2:61175792-61175811 | None:intergenic | 40.0% |
| ACCTATTCCAATGACGTTCT+AGG | + | chr4_2:61175813-61175832 | Msa0612680:intron | 40.0% | |
| TCCTAGAACGTCATTGGAAT+AGG | - | chr4_2:61175817-61175836 | None:intergenic | 40.0% | |
| !! | ATTCCAATGACGTTCTAGGA+CGG | + | chr4_2:61175817-61175836 | Msa0612680:intron | 40.0% |
| ! | ATCAACCTGGCCCTAATTTT+AGG | + | chr4_2:61175918-61175937 | Msa0612680:intron | 40.0% |
| ! | TTGAAAATTGTGTCGGCGTT+GGG | - | chr4_2:61176014-61176033 | None:intergenic | 40.0% |
| ! | TTTGAAAATTGTGTCGGCGT+TGG | - | chr4_2:61176015-61176034 | None:intergenic | 40.0% |
| ATAGTTGGAGTAGAACTGAG+CGG | - | chr4_2:61176054-61176073 | None:intergenic | 40.0% | |
| ! | TATCCTCTTTTGTCAATGGC+GGG | - | chr4_2:61176343-61176362 | None:intergenic | 40.0% |
| ! | CTATCCTCTTTTGTCAATGG+CGG | - | chr4_2:61176344-61176363 | None:intergenic | 40.0% |
| ACTACGCTCGTGTAATTAGA+AGG | + | chr4_2:61176402-61176421 | Msa0612680:intron | 40.0% | |
| TGGACGAACAATCCTGTTAT+TGG | + | chr4_2:61176729-61176748 | Msa0612680:intron | 40.0% | |
| AGCACACAACTACCAATAAC+AGG | - | chr4_2:61176744-61176763 | None:intergenic | 40.0% | |
| AGGTTGGACAAGTTAAGTGT+GGG | + | chr4_2:61177118-61177137 | Msa0612680:CDS | 40.0% | |
| CATGATGAACACCTAACTTG+TGG | - | chr4_2:61177180-61177199 | None:intergenic | 40.0% | |
| AAGTTAGGTGTTCATCATGC+CGG | + | chr4_2:61177181-61177200 | Msa0612680:CDS | 40.0% | |
| CAGATTGAATGAATAGAGGC+GGG | - | chr4_2:61177571-61177590 | None:intergenic | 40.0% | |
| CAGTTAATAGGACAATGGAC+AGG | - | chr4_2:61177759-61177778 | None:intergenic | 40.0% | |
| CTGTCCATTGTCCTATTAAC+TGG | + | chr4_2:61177757-61177776 | Msa0612680:three_prime_UTR | 40.0% | |
| TGACCCAGTTAATAGGACAA+TGG | - | chr4_2:61177764-61177783 | None:intergenic | 40.0% | |
| ACAAGGATGACCCAGTTAAT+AGG | - | chr4_2:61177771-61177790 | None:intergenic | 40.0% | |
| GTAGTGTGTGAAGAAGTCAC+GGG | + | chr4_2:61174482-61174501 | Msa0612680:five_prime_UTR | 45.0% | |
| AGCTGTGGAAAAAAGGGGTT+TGG | + | chr4_2:61174747-61174766 | Msa0612680:intron | 45.0% | |
| CATTTGACATGTTTGGCACC+TGG | - | chr4_2:61174936-61174955 | None:intergenic | 45.0% | |
| !! | CTAATTTTCGAGGAACCAGC+TGG | - | chr4_2:61175072-61175091 | None:intergenic | 45.0% |
| ATCTTCATCCAGTCCTGACA+TGG | - | chr4_2:61175154-61175173 | None:intergenic | 45.0% | |
| ! | TAACTGGGGTGTTACCTTCA+GGG | - | chr4_2:61175182-61175201 | None:intergenic | 45.0% |
| ! | ATAACTGGGGTGTTACCTTC+AGG | - | chr4_2:61175183-61175202 | None:intergenic | 45.0% |
| ! | TGGCTGGAGCTTTGATAACT+GGG | - | chr4_2:61175197-61175216 | None:intergenic | 45.0% |
| GTAGTGGTCCTTGAAAAGGA+CGG | - | chr4_2:61175228-61175247 | None:intergenic | 45.0% | |
| ! | TTGGGTAGTGGTCCTTGAAA+AGG | - | chr4_2:61175232-61175251 | None:intergenic | 45.0% |
| CCCTCCACTTTATGTCAAAG+TGG | + | chr4_2:61175376-61175395 | Msa0612680:intron | 45.0% | |
| CCCACTTTGACATAAAGTGG+AGG | - | chr4_2:61175380-61175399 | None:intergenic | 45.0% | |
| ! | GCTTCCCCTTGTTTGTACTT+TGG | + | chr4_2:61175530-61175549 | Msa0612680:intron | 45.0% |
| !! | GCTTGAGAGCATTGAGCAAT+AGG | - | chr4_2:61175611-61175630 | None:intergenic | 45.0% |
| AATGGGGTGGTGCAAATGAT+TGG | - | chr4_2:61175675-61175694 | None:intergenic | 45.0% | |
| ! | TCATTTGCACCACCCCATTT+TGG | + | chr4_2:61175676-61175695 | Msa0612680:intron | 45.0% |
| GTCTAGGTGGTTCCAAAATG+GGG | - | chr4_2:61175691-61175710 | None:intergenic | 45.0% | |
| CGTCTAGGTGGTTCCAAAAT+GGG | - | chr4_2:61175692-61175711 | None:intergenic | 45.0% | |
| !!! | CCATTTTGGAACCACCTAGA+CGG | + | chr4_2:61175690-61175709 | Msa0612680:intron | 45.0% |
| CGCTGAAGAGTTCAGTATTG+AGG | - | chr4_2:61175746-61175765 | None:intergenic | 45.0% | |
| TGACTGACCCAAACAGCAAA+TGG | + | chr4_2:61175781-61175800 | Msa0612680:intron | 45.0% | |
| TGCCAGTCAAGTAGCCAAAA+TGG | - | chr4_2:61175843-61175862 | None:intergenic | 45.0% | |
| TAACCAGGATGACATCAACC+TGG | + | chr4_2:61175905-61175924 | Msa0612680:intron | 45.0% | |
| CTACTCCTAAAATTAGGGCC+AGG | - | chr4_2:61175926-61175945 | None:intergenic | 45.0% | |
| TGGGATATCATCATCGCTTG+GGG | - | chr4_2:61175967-61175986 | None:intergenic | 45.0% | |
| GTGGGATATCATCATCGCTT+GGG | - | chr4_2:61175968-61175987 | None:intergenic | 45.0% | |
| TGTGGGATATCATCATCGCT+TGG | - | chr4_2:61175969-61175988 | None:intergenic | 45.0% | |
| TAGTTGGAGTAGAACTGAGC+GGG | - | chr4_2:61176053-61176072 | None:intergenic | 45.0% | |
| TTGGTCAATCATTTCGCCAG+TGG | - | chr4_2:61176279-61176298 | None:intergenic | 45.0% | |
| ACAGCTTATGAGTTGCAGTG+CGG | - | chr4_2:61176442-61176461 | None:intergenic | 45.0% | |
| ! | ATTGGTAGTTGTGTGCTTGC+TGG | + | chr4_2:61176747-61176766 | Msa0612680:intron | 45.0% |
| GCGTATATGCATTCTTGGAG+AGG | - | chr4_2:61176953-61176972 | None:intergenic | 45.0% | |
| ! | CAGGTTGGACAAGTTAAGTG+TGG | + | chr4_2:61177117-61177136 | Msa0612680:CDS | 45.0% |
| !! | TAACTTGTGGAGCACCGTAT+GGG | - | chr4_2:61177167-61177186 | None:intergenic | 45.0% |
| !! | TGCCGGTTTGTGACAGAAAT+CGG | + | chr4_2:61177198-61177217 | Msa0612680:CDS | 45.0% |
| ATCATCAATCCCCCTACACT+TGG | - | chr4_2:61177510-61177529 | None:intergenic | 45.0% | |
| TTGAATGAATAGAGGCGGGT+GGG | - | chr4_2:61177567-61177586 | None:intergenic | 45.0% | |
| ATTGAATGAATAGAGGCGGG+TGG | - | chr4_2:61177568-61177587 | None:intergenic | 45.0% | |
| CTGCCTGCACAAAAATCATG+AGG | - | chr4_2:61177668-61177687 | None:intergenic | 45.0% | |
| ! | CTTTGTTGTACAGACCATGG+AGG | - | chr4_2:61177702-61177721 | None:intergenic | 45.0% |
| AAACCAACTCCTCCCAAATC+TGG | + | chr4_2:61177723-61177742 | Msa0612680:CDS | 45.0% | |
| CTCCCAAATCTGGTTGTTAG+CGG | + | chr4_2:61177733-61177752 | Msa0612680:CDS | 45.0% | |
| GAAAAAAAAGGGATCACGGG+AGG | - | chr4_2:61177920-61177939 | None:intergenic | 45.0% | |
| TTGACATGTTTGGCACCTGG+TGG | - | chr4_2:61174933-61174952 | None:intergenic | 50.0% | |
| CCAGTCCTGACATGGTATCA+GGG | - | chr4_2:61175146-61175165 | None:intergenic | 50.0% | |
| TCCAGTCCTGACATGGTATC+AGG | - | chr4_2:61175147-61175166 | None:intergenic | 50.0% | |
| GATGAAGATACGACCCCTGA+AGG | + | chr4_2:61175165-61175184 | Msa0612680:intron | 50.0% | |
| ! | AACTGGGGTGTTACCTTCAG+GGG | - | chr4_2:61175181-61175200 | None:intergenic | 50.0% |
| ! | GGCTGGAGCTTTGATAACTG+GGG | - | chr4_2:61175196-61175215 | None:intergenic | 50.0% |
| ! | CTGGCTGGAGCTTTGATAAC+TGG | - | chr4_2:61175198-61175217 | None:intergenic | 50.0% |
| GGGATTGTTGGGTCCAAGAA+TGG | - | chr4_2:61175301-61175320 | None:intergenic | 50.0% | |
| GTATTTAGCCTCCTCAGCAG+TGG | - | chr4_2:61175442-61175461 | None:intergenic | 50.0% | |
| !! | GAGCATTGAGCAATAGGGTG+AGG | - | chr4_2:61175605-61175624 | None:intergenic | 50.0% |
| TCAATGCTCTCAAGCCGACT+CGG | + | chr4_2:61175616-61175635 | Msa0612680:intron | 50.0% | |
| GGAATGAGAATGGAGCTGTC+AGG | - | chr4_2:61175654-61175673 | None:intergenic | 50.0% | |
| TAGGTGGTTCCAAAATGGGG+TGG | - | chr4_2:61175688-61175707 | None:intergenic | 50.0% | |
| CCGTCTAGGTGGTTCCAAAA+TGG | - | chr4_2:61175693-61175712 | None:intergenic | 50.0% | |
| !!! | ACGTTCTAGGACGGCCATTT+TGG | + | chr4_2:61175826-61175845 | Msa0612680:intron | 50.0% |
| !!! | GGCCATTTTGGCTACTTGAC+TGG | + | chr4_2:61175838-61175857 | Msa0612680:intron | 50.0% |
| TATCATCATCGCTTGGGGCT+AGG | - | chr4_2:61175962-61175981 | None:intergenic | 50.0% | |
| CAACTCAAGACCTGCTGCAA+TGG | + | chr4_2:61176211-61176230 | Msa0612680:intron | 50.0% | |
| AACTGCTTGTCCTGAGCCTT+CGG | - | chr4_2:61176243-61176262 | None:intergenic | 50.0% | |
| TGGCATGAGCCATGAGTTCT+TGG | - | chr4_2:61176298-61176317 | None:intergenic | 50.0% | |
| AGACCCGCCATTGACAAAAG+AGG | + | chr4_2:61176337-61176356 | Msa0612680:intron | 50.0% | |
| CAGCTTATGAGTTGCAGTGC+GGG | - | chr4_2:61176441-61176460 | None:intergenic | 50.0% | |
| TTCCTTCGTCACAGCTGATC+AGG | + | chr4_2:61177098-61177117 | Msa0612680:intron | 50.0% | |
| AACCTGATCAGCTGTGACGA+AGG | - | chr4_2:61177103-61177122 | None:intergenic | 50.0% | |
| TTCGTCACAGCTGATCAGGT+TGG | + | chr4_2:61177102-61177121 | Msa0612680:intron | 50.0% | |
| !! | CTAACTTGTGGAGCACCGTA+TGG | - | chr4_2:61177168-61177187 | None:intergenic | 50.0% |
| CATACGGTGCTCCACAAGTT+AGG | + | chr4_2:61177166-61177185 | Msa0612680:CDS | 50.0% | |
| !! | GCCGGTTTGTGACAGAAATC+GGG | + | chr4_2:61177199-61177218 | Msa0612680:CDS | 50.0% |
| CCCCGATTTCTGTCACAAAC+CGG | - | chr4_2:61177203-61177222 | None:intergenic | 50.0% | |
| ! | CCGGTTTGTGACAGAAATCG+GGG | + | chr4_2:61177200-61177219 | Msa0612680:CDS | 50.0% |
| TTGTGCAGGCAGACAACAAG+CGG | + | chr4_2:61177676-61177695 | Msa0612680:intron | 50.0% | |
| CAACCAGATTTGGGAGGAGT+TGG | - | chr4_2:61177729-61177748 | None:intergenic | 50.0% | |
| CGCTAACAACCAGATTTGGG+AGG | - | chr4_2:61177735-61177754 | None:intergenic | 50.0% | |
| GGCCGCTAACAACCAGATTT+GGG | - | chr4_2:61177738-61177757 | None:intergenic | 50.0% | |
| AGGCCGCTAACAACCAGATT+TGG | - | chr4_2:61177739-61177758 | None:intergenic | 50.0% | |
| ATAGGTTGCCAACCAGGTGG+CGG | - | chr4_2:61174570-61174589 | None:intergenic | 55.0% | |
| GGAATAGGTTGCCAACCAGG+TGG | - | chr4_2:61174573-61174592 | None:intergenic | 55.0% | |
| AACTGACCGGATGGGAGTGA+CGG | - | chr4_2:61174624-61174643 | None:intergenic | 55.0% | |
| ! | CTGGTGGATACGAAAGCAGG+CGG | - | chr4_2:61174917-61174936 | None:intergenic | 55.0% |
| ! | CACCTGGTGGATACGAAAGC+AGG | - | chr4_2:61174920-61174939 | None:intergenic | 55.0% |
| CCCTGATACCATGTCAGGAC+TGG | + | chr4_2:61175143-61175162 | Msa0612680:intron | 55.0% | |
| TGAAAAGGACGGAGGTCTGC+TGG | - | chr4_2:61175217-61175236 | None:intergenic | 55.0% | |
| ! | GCAGACCTCCGTCCTTTTCA+AGG | + | chr4_2:61175217-61175236 | Msa0612680:intron | 55.0% |
| GTGGTCCTTGAAAAGGACGG+AGG | - | chr4_2:61175225-61175244 | None:intergenic | 55.0% | |
| ! | CAGCAGTGGTGGAGTTCCAA+TGG | - | chr4_2:61175428-61175447 | None:intergenic | 55.0% |
| TTGGAACTCCACCACTGCTG+AGG | + | chr4_2:61175428-61175447 | Msa0612680:intron | 55.0% | |
| TTTAGCCTCCTCAGCAGTGG+TGG | - | chr4_2:61175439-61175458 | None:intergenic | 55.0% | |
| CCTGCAAGCCTCTCTGTTTG+AGG | - | chr4_2:61175508-61175527 | None:intergenic | 55.0% | |
| CCTCAAACAGAGAGGCTTGC+AGG | + | chr4_2:61175505-61175524 | Msa0612680:intron | 55.0% | |
| ! | CAATGCTCTCAAGCCGACTC+GGG | + | chr4_2:61175617-61175636 | Msa0612680:intron | 55.0% |
| ! | ACTCTTCAGCGCACTGATGC+AGG | + | chr4_2:61175755-61175774 | Msa0612680:intron | 55.0% |
| TGGCCGTCCTAGAACGTCAT+TGG | - | chr4_2:61175823-61175842 | None:intergenic | 55.0% | |
| GCGTTGGGCACGACATTGTT+TGG | - | chr4_2:61175999-61176018 | None:intergenic | 55.0% | |
| TCGGCTGTATCCATTGCAGC+AGG | - | chr4_2:61176224-61176243 | None:intergenic | 55.0% | |
| GCTGCAATGGATACAGCCGA+AGG | + | chr4_2:61176224-61176243 | Msa0612680:intron | 55.0% | |
| ATGGATACAGCCGAAGGCTC+AGG | + | chr4_2:61176230-61176249 | Msa0612680:intron | 55.0% | |
| TTTCGCCAGTGGCGCGAAAT+GGG | - | chr4_2:61176268-61176287 | None:intergenic | 55.0% | |
| ATTTCGCCAGTGGCGCGAAA+TGG | - | chr4_2:61176269-61176288 | None:intergenic | 55.0% | |
| TAGGTTGCCAACCAGGTGGC+GGG | - | chr4_2:61174569-61174588 | None:intergenic | 60.0% | |
| GGGGGAATAGGTTGCCAACC+AGG | - | chr4_2:61174576-61174595 | None:intergenic | 60.0% | |
| CGCCTGCTTTCGTATCCACC+AGG | + | chr4_2:61174915-61174934 | Msa0612680:CDS | 60.0% | |
| GAACTCCACCACTGCTGAGG+AGG | + | chr4_2:61175431-61175450 | Msa0612680:intron | 60.0% | |
| !! | GGGCCAGGTTGATGTCATCC+TGG | - | chr4_2:61175911-61175930 | None:intergenic | 60.0% |
| TGGGGCTAGGTGTGGAGTAC+AGG | - | chr4_2:61175949-61175968 | None:intergenic | 60.0% | |
| TCATCGCTTGGGGCTAGGTG+TGG | - | chr4_2:61175957-61175976 | None:intergenic | 60.0% | |
| GTTGTCCCATTTCGCGCCAC+TGG | + | chr4_2:61176260-61176279 | Msa0612680:intron | 60.0% | |
| CAGACAACAAGCGGCCTCCA+TGG | + | chr4_2:61177685-61177704 | Msa0612680:CDS | 60.0% | |
| GGGATCACGGGAGGAACAGA+AGG | - | chr4_2:61177911-61177930 | None:intergenic | 60.0% | |
| TGACCGGATGGGAGTGACGG+TGG | - | chr4_2:61174621-61174640 | None:intergenic | 65.0% | |
| AAGGACGGAGGTCTGCTGGC+TGG | - | chr4_2:61175213-61175232 | None:intergenic | 65.0% | |
| !! | CTCAAGCCGACTCGGGTCAC+TGG | + | chr4_2:61175624-61175643 | Msa0612680:intron | 65.0% |
| GGCGTTCCAGTGACCCGAGT+CGG | - | chr4_2:61175633-61175652 | None:intergenic | 65.0% | |
| ! | GGGCGTTGCGGTGGGGGAAT+AGG | - | chr4_2:61174588-61174607 | None:intergenic | 70.0% |
| TTCCCCCACCGCAACGCCCA+CGG | + | chr4_2:61174589-61174608 | Msa0612680:CDS | 70.0% | |
| ! | GATGGGAGTGACGGTGGCGG+TGG | - | chr4_2:61174615-61174634 | None:intergenic | 70.0% |
| CCGGATGGGAGTGACGGTGG+CGG | - | chr4_2:61174618-61174637 | None:intergenic | 70.0% | |
| CCGCCACCGTCACTCCCATC+CGG | + | chr4_2:61174615-61174634 | Msa0612680:CDS | 70.0% | |
| ACGACGGCCCGCCACCTGGT+TGG | + | chr4_2:61174559-61174578 | Msa0612680:CDS | 75.0% | |
| ! | TGGCCGTGGGCGTTGCGGTG+GGG | - | chr4_2:61174595-61174614 | None:intergenic | 75.0% |
| ! | GTGGCCGTGGGCGTTGCGGT+GGG | - | chr4_2:61174596-61174615 | None:intergenic | 75.0% |
| ! | GTGACGGTGGCGGTGGCCGT+GGG | - | chr4_2:61174608-61174627 | None:intergenic | 75.0% |
| ! | AGTGACGGTGGCGGTGGCCG+TGG | - | chr4_2:61174609-61174628 | None:intergenic | 75.0% |
| ! | GACGACGACGGCCCGCCACC+TGG | + | chr4_2:61174555-61174574 | Msa0612680:CDS | 80.0% |
| !! | GGCCGTGGGCGTTGCGGTGG+GGG | - | chr4_2:61174594-61174613 | None:intergenic | 80.0% |
| !! | GGTGGCCGTGGGCGTTGCGG+TGG | - | chr4_2:61174597-61174616 | None:intergenic | 80.0% |
| !! | GGCGGTGGCCGTGGGCGTTG+CGG | - | chr4_2:61174600-61174619 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 61174427 | 61178095 | 61174427 | ID=Msa0612680;Name=Msa0612680 |
| chr4_2 | mRNA | 61174427 | 61178095 | 61174427 | ID=Msa0612680-mRNA-1;Parent=Msa0612680;Name=Msa0612680-mRNA-1;_AED=0.14;_eAED=0.14;_QI=95|1|1|1|0.5|0.4|5|308|133 |
| chr4_2 | exon | 61174427 | 61174636 | 61174427 | ID=Msa0612680-mRNA-1:exon:16579;Parent=Msa0612680-mRNA-1 |
| chr4_2 | exon | 61174883 | 61174990 | 61174883 | ID=Msa0612680-mRNA-1:exon:16580;Parent=Msa0612680-mRNA-1 |
| chr4_2 | exon | 61177112 | 61177221 | 61177112 | ID=Msa0612680-mRNA-1:exon:16581;Parent=Msa0612680-mRNA-1 |
| chr4_2 | exon | 61177684 | 61177971 | 61177684 | ID=Msa0612680-mRNA-1:exon:16582;Parent=Msa0612680-mRNA-1 |
| chr4_2 | exon | 61178007 | 61178095 | 61178007 | ID=Msa0612680-mRNA-1:exon:16583;Parent=Msa0612680-mRNA-1 |
| chr4_2 | five_prime_UTR | 61174427 | 61174521 | 61174427 | ID=Msa0612680-mRNA-1:five_prime_utr;Parent=Msa0612680-mRNA-1 |
| chr4_2 | CDS | 61174522 | 61174636 | 61174522 | ID=Msa0612680-mRNA-1:cds;Parent=Msa0612680-mRNA-1 |
| chr4_2 | CDS | 61174883 | 61174990 | 61174883 | ID=Msa0612680-mRNA-1:cds;Parent=Msa0612680-mRNA-1 |
| chr4_2 | CDS | 61177112 | 61177221 | 61177112 | ID=Msa0612680-mRNA-1:cds;Parent=Msa0612680-mRNA-1 |
| chr4_2 | CDS | 61177684 | 61177752 | 61177684 | ID=Msa0612680-mRNA-1:cds;Parent=Msa0612680-mRNA-1 |
| chr4_2 | three_prime_UTR | 61177753 | 61177971 | 61177753 | ID=Msa0612680-mRNA-1:three_prime_utr;Parent=Msa0612680-mRNA-1 |
| chr4_2 | three_prime_UTR | 61178007 | 61178095 | 61178007 | ID=Msa0612680-mRNA-1:three_prime_utr;Parent=Msa0612680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
