Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803590 | G7JWE3 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 1.96e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029850 | Msa0803590 | 0.844817 | 5.976225e-59 | -8.615850e-47 |
| Msa0036140 | Msa0803590 | 0.816895 | 4.367355e-52 | -8.615850e-47 |
| Msa0037880 | Msa0803590 | 0.802801 | 4.722376e-49 | -8.615850e-47 |
| Msa0040620 | Msa0803590 | 0.811216 | 7.821272e-51 | -8.615850e-47 |
| Msa0043730 | Msa0803590 | 0.809243 | 2.083075e-50 | -8.615850e-47 |
| Msa0048000 | Msa0803590 | 0.816483 | 5.401931e-52 | -8.615850e-47 |
| Msa0068430 | Msa0803590 | 0.835937 | 1.254254e-56 | -8.615850e-47 |
| Msa0077180 | Msa0803590 | 0.841840 | 3.721729e-58 | -8.615850e-47 |
| Msa0077450 | Msa0803590 | 0.807815 | 4.204708e-50 | -8.615850e-47 |
| Msa0084080 | Msa0803590 | 0.808248 | 3.399240e-50 | -8.615850e-47 |
| Msa0084430 | Msa0803590 | 0.803297 | 3.727750e-49 | -8.615850e-47 |
| Msa0085720 | Msa0803590 | 0.831107 | 2.012811e-55 | -8.615850e-47 |
| Msa0086420 | Msa0803590 | 0.805534 | 1.274652e-49 | -8.615850e-47 |
| Msa0092440 | Msa0803590 | 0.814152 | 1.781758e-51 | -8.615850e-47 |
| Msa0102120 | Msa0803590 | 0.800019 | 1.753525e-48 | -8.615850e-47 |
| Msa0612680 | Msa0803590 | -0.810716 | 1.003905e-50 | -8.615850e-47 |
| Msa0613090 | Msa0803590 | 0.801734 | 7.828035e-49 | -8.615850e-47 |
| Msa0621750 | Msa0803590 | -0.804681 | 1.922253e-49 | -8.615850e-47 |
| Msa0626220 | Msa0803590 | 0.814430 | 1.546552e-51 | -8.615850e-47 |
| Msa0628740 | Msa0803590 | 0.833982 | 3.900265e-56 | -8.615850e-47 |
| Msa0651270 | Msa0803590 | 0.804917 | 1.716073e-49 | -8.615850e-47 |
| Msa0653320 | Msa0803590 | -0.832144 | 1.117921e-55 | -8.615850e-47 |
| Msa0666140 | Msa0803590 | 0.832232 | 1.063300e-55 | -8.615850e-47 |
| Msa0688070 | Msa0803590 | 0.810541 | 1.094954e-50 | -8.615850e-47 |
| Msa0693310 | Msa0803590 | 0.801895 | 7.256606e-49 | -8.615850e-47 |
| Msa0698360 | Msa0803590 | 0.801952 | 7.062956e-49 | -8.615850e-47 |
| Msa0709160 | Msa0803590 | 0.801988 | 6.944730e-49 | -8.615850e-47 |
| Msa0726080 | Msa0803590 | 0.800440 | 1.440070e-48 | -8.615850e-47 |
| Msa0749930 | Msa0803590 | 0.827699 | 1.354369e-54 | -8.615850e-47 |
| Msa0761890 | Msa0803590 | 0.874762 | 5.241290e-68 | -8.615850e-47 |
| Msa0778520 | Msa0803590 | 0.802703 | 4.945749e-49 | -8.615850e-47 |
| Msa0801740 | Msa0803590 | 0.859382 | 4.298535e-63 | -8.615850e-47 |
| Msa0803590 | Msa0805420 | 0.844884 | 5.731655e-59 | -8.615850e-47 |
| Msa0803590 | Msa0807030 | 0.807155 | 5.803173e-50 | -8.615850e-47 |
| Msa0803590 | Msa0830420 | 0.843979 | 1.004140e-58 | -8.615850e-47 |
| Msa0803590 | Msa0831850 | 0.801005 | 1.104072e-48 | -8.615850e-47 |
| Msa0803590 | Msa0832090 | 0.812031 | 5.202762e-51 | -8.615850e-47 |
| Msa0803590 | Msa0842770 | 0.831624 | 1.502528e-55 | -8.615850e-47 |
| Msa0803590 | Msa0846230 | 0.802144 | 6.449864e-49 | -8.615850e-47 |
| Msa0803590 | Msa0866400 | 0.812847 | 3.449948e-51 | -8.615850e-47 |
| Msa0803590 | Msa0866410 | 0.800397 | 1.469482e-48 | -8.615850e-47 |
| Msa0803590 | Msa0869100 | 0.807775 | 4.287149e-50 | -8.615850e-47 |
| Msa0803590 | Msa0919470 | 0.811952 | 5.412030e-51 | -8.615850e-47 |
| Msa0803590 | Msa0930140 | 0.801230 | 9.931668e-49 | -8.615850e-47 |
| Msa0803590 | Msa0933310 | 0.803799 | 2.933372e-49 | -8.615850e-47 |
| Msa0803590 | Msa0957870 | 0.815466 | 9.111557e-52 | -8.615850e-47 |
| Msa0803590 | Msa0957970 | 0.815554 | 8.710747e-52 | -8.615850e-47 |
| Msa0803590 | Msa0981310 | 0.812614 | 3.879388e-51 | -8.615850e-47 |
| Msa0803590 | Msa0982240 | 0.848230 | 6.995617e-60 | -8.615850e-47 |
| Msa0803590 | Msa1031770 | 0.833927 | 4.025087e-56 | -8.615850e-47 |
| Msa0803590 | Msa1032440 | 0.801858 | 7.382171e-49 | -8.615850e-47 |
| Msa0803590 | Msa1065610 | 0.802052 | 6.734865e-49 | -8.615850e-47 |
| Msa0803590 | Msa1070840 | 0.823567 | 1.291902e-53 | -8.615850e-47 |
| Msa0803590 | Msa1075080 | -0.807432 | 5.068784e-50 | -8.615850e-47 |
| Msa0803590 | Msa1111180 | 0.801616 | 8.278297e-49 | -8.615850e-47 |
| Msa0803590 | Msa1118110 | 0.804283 | 2.326961e-49 | -8.615850e-47 |
| Msa0803590 | Msa1118760 | 0.816380 | 5.697257e-52 | -8.615850e-47 |
| Msa0803590 | Msa1124540 | -0.801977 | 6.978028e-49 | -8.615850e-47 |
| Msa0803590 | Msa1130530 | 0.800616 | 1.325701e-48 | -8.615850e-47 |
| Msa0803590 | Msa1131530 | 0.800555 | 1.364268e-48 | -8.615850e-47 |
| Msa0803590 | Msa1133570 | 0.806253 | 8.999520e-50 | -8.615850e-47 |
| Msa0803590 | Msa1158660 | 0.804359 | 2.243454e-49 | -8.615850e-47 |
| Msa0803590 | Msa1170800 | 0.839690 | 1.362820e-57 | -8.615850e-47 |
| Msa0803590 | Msa1174310 | 0.834893 | 2.303697e-56 | -8.615850e-47 |
| Msa0803590 | Msa1174850 | 0.823365 | 1.440443e-53 | -8.615850e-47 |
| Msa0803590 | Msa1177780 | 0.802025 | 6.823783e-49 | -8.615850e-47 |
| Msa0803590 | Msa1199070 | 0.814590 | 1.425488e-51 | -8.615850e-47 |
| Msa0803590 | Msa1201560 | 0.801941 | 7.098708e-49 | -8.615850e-47 |
| Msa0803590 | Msa1206100 | 0.807828 | 4.176289e-50 | -8.615850e-47 |
| Msa0803590 | Msa1224480 | 0.806044 | 9.959398e-50 | -8.615850e-47 |
| Msa0803590 | Msa1230830 | 0.821798 | 3.333970e-53 | -8.615850e-47 |
| Msa0803590 | Msa1235400 | 0.834022 | 3.811806e-56 | -8.615850e-47 |
| Msa0803590 | Msa1264420 | 0.806093 | 9.722206e-50 | -8.615850e-47 |
| Msa0803590 | Msa1270660 | 0.801545 | 8.558771e-49 | -8.615850e-47 |
| Msa0803590 | Msa1276440 | 0.807617 | 4.631511e-50 | -8.615850e-47 |
| Msa0803590 | Msa1276510 | 0.815354 | 9.649283e-52 | -8.615850e-47 |
| Msa0803590 | Msa1295330 | 0.809824 | 1.563219e-50 | -8.615850e-47 |
| Msa0803590 | Msa1314770 | 0.833780 | 4.379994e-56 | -8.615850e-47 |
| Msa0803590 | Msa1329550 | 0.809080 | 2.257633e-50 | -8.615850e-47 |
| Msa0803590 | Msa1333420 | 0.806040 | 9.978660e-50 | -8.615850e-47 |
| Msa0803590 | Msa1335710 | 0.802605 | 5.181700e-49 | -8.615850e-47 |
| Msa0803590 | Msa1340810 | 0.805956 | 1.039070e-49 | -8.615850e-47 |
| Msa0803590 | Msa1341950 | 0.801790 | 7.623402e-49 | -8.615850e-47 |
| Msa0803590 | Msa1348470 | -0.814291 | 1.660550e-51 | -8.615850e-47 |
| Msa0803590 | Msa1351550 | 0.802450 | 5.578777e-49 | -8.615850e-47 |
| Msa0803590 | Msa1357190 | 0.819369 | 1.203933e-52 | -8.615850e-47 |
| Msa0803590 | Msa1366300 | 0.816533 | 5.266830e-52 | -8.615850e-47 |
| Msa0803590 | Msa1371240 | 0.803481 | 3.414677e-49 | -8.615850e-47 |
| Msa0803590 | Msa1372290 | 0.813444 | 2.551362e-51 | -8.615850e-47 |
| Msa0803590 | Msa1372580 | 0.801109 | 1.051370e-48 | -8.615850e-47 |
| Msa0803590 | Msa1376130 | 0.820437 | 6.862910e-53 | -8.615850e-47 |
| Msa0803590 | Msa1377570 | 0.826768 | 2.263481e-54 | -8.615850e-47 |
| Msa0803590 | Msa1378230 | 0.807747 | 4.347012e-50 | -8.615850e-47 |
| Msa0803590 | Msa1379850 | 0.831077 | 2.047815e-55 | -8.615850e-47 |
| Msa0803590 | Msa1396940 | 0.809724 | 1.642323e-50 | -8.615850e-47 |
| Msa0803590 | Msa1397120 | 0.813638 | 2.313232e-51 | -8.615850e-47 |
| Msa0803590 | Msa1402270 | 0.801614 | 8.285930e-49 | -8.615850e-47 |
| Msa0803590 | Msa1403890 | 0.809918 | 1.492112e-50 | -8.615850e-47 |
| Msa0803590 | Msa1410510 | 0.810172 | 1.315766e-50 | -8.615850e-47 |
| Msa0803590 | Msa1426570 | 0.801752 | 7.763078e-49 | -8.615850e-47 |
| Msa0803590 | Msa1431060 | 0.801696 | 7.971413e-49 | -8.615850e-47 |
| Msa0803590 | Msa1433220 | 0.806489 | 8.024915e-50 | -8.615850e-47 |
| Msa0803590 | Msa1437130 | 0.809257 | 2.069461e-50 | -8.615850e-47 |
| Msa0803590 | Msa1437680 | 0.833005 | 6.834898e-56 | -8.615850e-47 |
| Msa0803590 | Msa1447150 | 0.851545 | 8.279453e-61 | -8.615850e-47 |
| Msa0803590 | Msa1449520 | 0.801120 | 1.046084e-48 | -8.615850e-47 |
| Msa0803590 | Msa1451620 | -0.802077 | 6.657009e-49 | -8.615850e-47 |
| Msa0124550 | Msa0803590 | 0.840240 | 9.797895e-58 | -8.615850e-47 |
| Msa0125050 | Msa0803590 | 0.828932 | 6.826799e-55 | -8.615850e-47 |
| Msa0137570 | Msa0803590 | 0.806959 | 6.383754e-50 | -8.615850e-47 |
| Msa0138500 | Msa0803590 | 0.808743 | 2.665327e-50 | -8.615850e-47 |
| Msa0138520 | Msa0803590 | 0.808064 | 3.721323e-50 | -8.615850e-47 |
| Msa0159770 | Msa0803590 | 0.824411 | 8.192407e-54 | -8.615850e-47 |
| Msa0169820 | Msa0803590 | 0.845507 | 3.889264e-59 | -8.615850e-47 |
| Msa0170140 | Msa0803590 | 0.806792 | 6.924001e-50 | -8.615850e-47 |
| Msa0175050 | Msa0803590 | 0.809655 | 1.699228e-50 | -8.615850e-47 |
| Msa0186950 | Msa0803590 | 0.802246 | 6.145525e-49 | -8.615850e-47 |
| Msa0199800 | Msa0803590 | -0.820064 | 8.354887e-53 | -8.615850e-47 |
| Msa0206010 | Msa0803590 | 0.815620 | 8.420789e-52 | -8.615850e-47 |
| Msa0219240 | Msa0803590 | 0.801620 | 8.263539e-49 | -8.615850e-47 |
| Msa0220440 | Msa0803590 | 0.802676 | 5.010265e-49 | -8.615850e-47 |
| Msa0376590 | Msa0803590 | 0.805702 | 1.175057e-49 | -8.615850e-47 |
| Msa0376910 | Msa0803590 | 0.808480 | 3.033600e-50 | -8.615850e-47 |
| Msa0379640 | Msa0803590 | 0.808318 | 3.285606e-50 | -8.615850e-47 |
| Msa0390960 | Msa0803590 | 0.810409 | 1.169375e-50 | -8.615850e-47 |
| Msa0394340 | Msa0803590 | 0.804910 | 1.721600e-49 | -8.615850e-47 |
| Msa0422010 | Msa0803590 | 0.803684 | 3.099500e-49 | -8.615850e-47 |
| Msa0424990 | Msa0803590 | 0.811398 | 7.142931e-51 | -8.615850e-47 |
| Msa0430870 | Msa0803590 | 0.804025 | 2.632613e-49 | -8.615850e-47 |
| Msa0436370 | Msa0803590 | 0.830772 | 2.432548e-55 | -8.615850e-47 |
| Msa0442270 | Msa0803590 | 0.800697 | 1.276075e-48 | -8.615850e-47 |
| Msa0464900 | Msa0803590 | 0.811300 | 7.500554e-51 | -8.615850e-47 |
| Msa0467930 | Msa0803590 | 0.818603 | 1.798824e-52 | -8.615850e-47 |
| Msa0476880 | Msa0803590 | 0.832433 | 9.481205e-56 | -8.615850e-47 |
| Msa0477130 | Msa0803590 | -0.835699 | 1.441151e-56 | -8.615850e-47 |
| Msa0249100 | Msa0803590 | 0.800643 | 1.309067e-48 | -8.615850e-47 |
| Msa0250670 | Msa0803590 | 0.806227 | 9.112923e-50 | -8.615850e-47 |
| Msa0260810 | Msa0803590 | 0.800704 | 1.272306e-48 | -8.615850e-47 |
| Msa0261720 | Msa0803590 | 0.808456 | 3.069400e-50 | -8.615850e-47 |
| Msa0269520 | Msa0803590 | 0.803612 | 3.208618e-49 | -8.615850e-47 |
| Msa0271580 | Msa0803590 | 0.838783 | 2.342797e-57 | -8.615850e-47 |
| Msa0271650 | Msa0803590 | 0.809459 | 1.872498e-50 | -8.615850e-47 |
| Msa0286670 | Msa0803590 | 0.808639 | 2.805918e-50 | -8.615850e-47 |
| Msa0287410 | Msa0803590 | 0.802235 | 6.177888e-49 | -8.615850e-47 |
| Msa0299580 | Msa0803590 | 0.834669 | 2.621682e-56 | -8.615850e-47 |
| Msa0304840 | Msa0803590 | 0.841988 | 3.402605e-58 | -8.615850e-47 |
| Msa0310430 | Msa0803590 | 0.815663 | 8.237849e-52 | -8.615850e-47 |
| Msa0326110 | Msa0803590 | 0.817617 | 3.005149e-52 | -8.615850e-47 |
| Msa0337060 | Msa0803590 | 0.812298 | 4.548765e-51 | -8.615850e-47 |
| Msa0340170 | Msa0803590 | 0.820808 | 5.640428e-53 | -8.615850e-47 |
| Msa0341230 | Msa0803590 | 0.838124 | 3.463983e-57 | -8.615850e-47 |
| Msa0489610 | Msa0803590 | 0.809410 | 1.918279e-50 | -8.615850e-47 |
| Msa0523460 | Msa0803590 | 0.800629 | 1.317914e-48 | -8.615850e-47 |
| Msa0557950 | Msa0803590 | -0.830736 | 2.482317e-55 | -8.615850e-47 |
| Msa0566750 | Msa0803590 | 0.800329 | 1.516893e-48 | -8.615850e-47 |
| Msa0579130 | Msa0803590 | 0.801186 | 1.014128e-48 | -8.615850e-47 |
| Msa0588240 | Msa0803590 | 0.809845 | 1.546990e-50 | -8.615850e-47 |
| Msa0598160 | Msa0803590 | 0.800869 | 1.177374e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803590 | MtrunA17_Chr5g0412221 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 3.77e-123 | 343 |
| Msa0803590 | MtrunA17_Chr8g0367531 | 59.669 | 181 | 56 | 7 | 3 | 173 | 1 | 174 | 2.07e-49 | 157 |
| Msa0803590 | MtrunA17_Chr5g0427491 | 50.847 | 177 | 73 | 8 | 1 | 170 | 1 | 170 | 1.87e-46 | 149 |
| Msa0803590 | MtrunA17_Chr3g0132871 | 39.326 | 178 | 94 | 6 | 1 | 170 | 1 | 172 | 8.13e-27 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803590 | AT4G38060.3 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.38e-25 | 95.1 |
| Msa0803590 | AT4G38060.2 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.38e-25 | 95.1 |
| Msa0803590 | AT4G38060.4 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.38e-25 | 95.1 |
| Msa0803590 | AT4G38060.1 | 40.323 | 124 | 55 | 4 | 36 | 159 | 20 | 124 | 4.02e-17 | 73.6 |
| Msa0803590 | AT5G65480.1 | 44.048 | 84 | 28 | 5 | 89 | 168 | 82 | 150 | 7.75e-12 | 60.5 |
Find 96 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGAAACAATTCCAATTT+TGG | 0.118475 | 5_3:-18825183 | Msa0803590:five_prime_UTR |
| ATTTCTTCAAGTTGCTTAAT+TGG | 0.122561 | 5_3:-18825293 | Msa0803590:five_prime_UTR |
| TTAATTGGGTTTGATATTTA+AGG | 0.124236 | 5_3:-18825278 | Msa0803590:five_prime_UTR |
| TCAATTTGCAATGCAAAATT+TGG | 0.174380 | 5_3:-18822904 | Msa0803590:three_prime_UTR |
| CTTAGCTTTAGGGTCAAAAT+TGG | 0.205002 | 5_3:+18825570 | None:intergenic |
| ATCTTCATCTTGTATGATTA+AGG | 0.214291 | 5_3:-18823032 | Msa0803590:three_prime_UTR |
| TTTGAATCATAATGAGATAT+TGG | 0.219187 | 5_3:-18825484 | Msa0803590:five_prime_UTR |
| GAGTAAAGACCTTAGCTTTA+GGG | 0.230350 | 5_3:+18825560 | None:intergenic |
| TTCCGTGTAATTCGCGAGTT+AGG | 0.239847 | 5_3:-18825773 | Msa0803590:five_prime_UTR |
| ATTATTGGGGATTAATTTCT+TGG | 0.242680 | 5_3:-18825393 | Msa0803590:five_prime_UTR |
| CAATTCTTTCTCAAGTTCCT+TGG | 0.266048 | 5_3:-18825060 | Msa0803590:five_prime_UTR |
| CTTTGACACGTTTGTCTTGT+TGG | 0.293279 | 5_3:-18824886 | Msa0803590:CDS |
| CGCTACCGGAAACAAAATTA+AGG | 0.293734 | 5_3:+18825664 | None:intergenic |
| GAGAAAGAGCCTATTGTTAA+TGG | 0.294492 | 5_3:-18824845 | Msa0803590:CDS |
| CAATTCATAAAAGCCAAAAT+TGG | 0.307937 | 5_3:+18825170 | None:intergenic |
| TAGCAAAATTGCAAAGCTTA+AGG | 0.310663 | 5_3:+18824939 | None:intergenic |
| TATCTCATTATGATTCAAAA+TGG | 0.313629 | 5_3:+18825488 | None:intergenic |
| TTGCTTCCTCTACTTCTAAA+AGG | 0.316170 | 5_3:+18822996 | None:intergenic |
| GATGACTCAGATTGGTCTAT+TGG | 0.319310 | 5_3:-18824626 | Msa0803590:CDS |
| TTGAATCATAATGAGATATT+GGG | 0.321523 | 5_3:-18825483 | Msa0803590:five_prime_UTR |
| TGAGTAAAGACCTTAGCTTT+AGG | 0.328629 | 5_3:+18825559 | None:intergenic |
| CTATGAGTGATGAAGCATTT+AGG | 0.346632 | 5_3:+18824971 | None:intergenic |
| CTAGGTTTCTTCTTGTTCAC+TGG | 0.354455 | 5_3:-18825526 | Msa0803590:five_prime_UTR |
| AATTCTTTCTCAAGTTCCTT+GGG | 0.356156 | 5_3:-18825059 | Msa0803590:five_prime_UTR |
| TAGAAGAAAAGTTGTAACTA+TGG | 0.360829 | 5_3:-18824915 | Msa0803590:exon |
| AAATTACATTAGATGCATAA+TGG | 0.361183 | 5_3:+18822966 | None:intergenic |
| TTGGTTATGGAGAGGTAGTA+AGG | 0.362202 | 5_3:-18824867 | Msa0803590:CDS |
| AGCAAAATTGCAAAGCTTAA+GGG | 0.366535 | 5_3:+18824940 | None:intergenic |
| CACGTTTGTCTTGTTGGTTA+TGG | 0.369107 | 5_3:-18824880 | Msa0803590:CDS |
| TTTCTTCAAGTTGCTTAATT+GGG | 0.372764 | 5_3:-18825292 | Msa0803590:five_prime_UTR |
| TCTTCTACACATTGTGTTAC+CGG | 0.373001 | 5_3:-18825726 | Msa0803590:five_prime_UTR |
| GATGGATTTCCATTAACAAT+AGG | 0.374602 | 5_3:+18824836 | None:intergenic |
| CAAATAATCAAAGGAAGGTT+AGG | 0.383783 | 5_3:-18824751 | Msa0803590:CDS |
| TCCGTGTAATTCGCGAGTTA+GGG | 0.387182 | 5_3:-18825772 | Msa0803590:five_prime_UTR |
| GGTGGTGGTGGTTGTTTGTC+AGG | 0.396455 | 5_3:-18824659 | Msa0803590:CDS |
| CTTGAAGAAATTAATTTGAC+TGG | 0.402088 | 5_3:+18825305 | None:intergenic |
| CTAGAATAGAACATACTATA+TGG | 0.402303 | 5_3:-18822879 | Msa0803590:three_prime_UTR |
| TTACCAGAAGAAAATTCATT+TGG | 0.409882 | 5_3:+18824449 | None:intergenic |
| TTAGGAAGAAGTGGCAGAGT+AGG | 0.411049 | 5_3:-18824733 | Msa0803590:CDS |
| ATGACTCAGATTGGTCTATT+GGG | 0.420028 | 5_3:-18824625 | Msa0803590:CDS |
| TTTGAAGTTTCCTTTGATGA+AGG | 0.436540 | 5_3:-18824777 | Msa0803590:CDS |
| TAGGAAGAAGTGGCAGAGTA+GGG | 0.441023 | 5_3:-18824732 | Msa0803590:CDS |
| AAGATGAAGATGCGTGTGTT+TGG | 0.448789 | 5_3:+18823044 | None:intergenic |
| CCTTCAACTTCCTTGCAACC+TGG | 0.459031 | 5_3:+18824512 | None:intergenic |
| AGTGGCAGAGTAGGGAAGAG+AGG | 0.465355 | 5_3:-18824724 | Msa0803590:CDS |
| CTTCTAAAAGGTAGTCAGAA+AGG | 0.471157 | 5_3:+18823008 | None:intergenic |
| TTTACTCAGAAGTATTTACT+AGG | 0.473743 | 5_3:-18825544 | Msa0803590:five_prime_UTR |
| TCCGGCGATAATAAATAAAC+CGG | 0.476910 | 5_3:+18825707 | None:intergenic |
| ATGGAAATCCATCTTCTGAA+TGG | 0.490855 | 5_3:-18824826 | Msa0803590:CDS |
| TCTCAAGTTCCTTGGGTGAG+TGG | 0.495210 | 5_3:-18825052 | Msa0803590:five_prime_UTR |
| CTTCTTCTAGATTTATAGAG+TGG | 0.500718 | 5_3:+18825825 | None:intergenic |
| CAGTTGTGTGCAGAGATATC+CGG | 0.506930 | 5_3:-18825019 | Msa0803590:five_prime_UTR |
| CCAGGTTGCAAGGAAGTTGA+AGG | 0.512670 | 5_3:-18824512 | Msa0803590:CDS |
| AACTCTGATTTCCACTGCGC+CGG | 0.513972 | 5_3:-18823117 | Msa0803590:three_prime_UTR |
| CGATGGTCGTGGACGGTGGA+AGG | 0.519400 | 5_3:-18823082 | Msa0803590:three_prime_UTR |
| GTATCATCTGATGGTGGTGG+TGG | 0.523059 | 5_3:-18824671 | Msa0803590:CDS |
| TCAACTTCAATATTCTACTT+CGG | 0.523910 | 5_3:-18822791 | Msa0803590:three_prime_UTR |
| ATTGGGGATTAATTTCTTGG+AGG | 0.524342 | 5_3:-18825390 | Msa0803590:five_prime_UTR |
| ACCGGTTTATTTATTATCGC+CGG | 0.526188 | 5_3:-18825708 | Msa0803590:five_prime_UTR |
| CTGAATCTGATGACTCAGAT+TGG | 0.527691 | 5_3:-18824634 | Msa0803590:CDS |
| TTGAAGTTTCCTTTGATGAA+GGG | 0.535589 | 5_3:-18824776 | Msa0803590:CDS |
| TGCAGCTGGAAACAATTACA+TGG | 0.536763 | 5_3:-18823202 | Msa0803590:intron |
| TTAGTTCCTTGTTATAGACC+AGG | 0.537191 | 5_3:-18824530 | Msa0803590:CDS |
| GATCGGAGCGAGAATTTCTC+CGG | 0.545220 | 5_3:+18825689 | None:intergenic |
| ACCCTAACTCGCGAATTACA+CGG | 0.550476 | 5_3:+18825771 | None:intergenic |
| ATTGGGTGGTTAGAGCCTCA+TGG | 0.551380 | 5_3:-18824608 | Msa0803590:CDS |
| TTATTTGTTCCCTTCATCAA+AGG | 0.553314 | 5_3:+18824767 | None:intergenic |
| AATCCGATCATTTACGCTAC+CGG | 0.553523 | 5_3:+18825650 | None:intergenic |
| GAAACAAAATTAAGGAAGAT+CGG | 0.560046 | 5_3:+18825672 | None:intergenic |
| TTTCCGGTAGCGTAAATGAT+CGG | 0.567997 | 5_3:-18825653 | Msa0803590:five_prime_UTR |
| AAAGGAAGGTTAGGAAGAAG+TGG | 0.568851 | 5_3:-18824742 | Msa0803590:CDS |
| TTAGTATCATCTGATGGTGG+TGG | 0.573261 | 5_3:-18824674 | Msa0803590:CDS |
| TGATCGATGGTCGTGGACGG+TGG | 0.573888 | 5_3:-18823086 | Msa0803590:three_prime_UTR |
| TTGTTATAGACCAGGTTGCA+AGG | 0.574059 | 5_3:-18824522 | Msa0803590:CDS |
| TGATGCAATAAATTGATCAA+AGG | 0.579494 | 5_3:+18825246 | None:intergenic |
| ACCATCGATCAAACTCTAGC+CGG | 0.591368 | 5_3:+18823098 | None:intergenic |
| GGGAACAAATAATCAAAGGA+AGG | 0.591584 | 5_3:-18824756 | Msa0803590:CDS |
| ACACACACTCAAAGAATCAT+CGG | 0.591756 | 5_3:+18825601 | None:intergenic |
| GAAACAATTACATGGAACAA+TGG | 0.593678 | 5_3:-18823194 | Msa0803590:CDS |
| TGAAGGGAACAAATAATCAA+AGG | 0.593937 | 5_3:-18824760 | Msa0803590:CDS |
| GTTTGATCGATGGTCGTGGA+CGG | 0.594622 | 5_3:-18823089 | Msa0803590:three_prime_UTR |
| ACGAGTTTCATAGTAACTGT+GGG | 0.596873 | 5_3:-18825802 | Msa0803590:five_prime_UTR |
| ATGAAGCATTTAGGAAGCCA+AGG | 0.598362 | 5_3:+18824980 | None:intergenic |
| GACGAGTTTCATAGTAACTG+TGG | 0.604473 | 5_3:-18825803 | Msa0803590:five_prime_UTR |
| TTGTCTTGTTGGTTATGGAG+AGG | 0.611884 | 5_3:-18824875 | Msa0803590:CDS |
| TAGAGTTTGATCGATGGTCG+TGG | 0.612486 | 5_3:-18823093 | Msa0803590:three_prime_UTR |
| ACTCAGATTGGTCTATTGGG+TGG | 0.613034 | 5_3:-18824622 | Msa0803590:CDS |
| GATGATTCTTTGAGTGTGTG+TGG | 0.613288 | 5_3:-18825599 | Msa0803590:five_prime_UTR |
| ATCAGAGTTTACAAACACAC+TGG | 0.616161 | 5_3:+18823131 | None:intergenic |
| TCAAACTCTAGCCGGCGCAG+TGG | 0.648271 | 5_3:+18823106 | None:intergenic |
| AATAAATTGATCAAAGGACA+AGG | 0.657144 | 5_3:+18825252 | None:intergenic |
| GGAGACTAACCACTCACCCA+AGG | 0.660610 | 5_3:+18825043 | None:intergenic |
| GCCGGCTAGAGTTTGATCGA+TGG | 0.667733 | 5_3:-18823099 | Msa0803590:three_prime_UTR |
| TTGCAACCTGGTCTATAACA+AGG | 0.667827 | 5_3:+18824524 | None:intergenic |
| GATATCTCTGCACACAACTG+CGG | 0.685040 | 5_3:+18825022 | None:intergenic |
| CTCTGAAAATCAGAACCATG+AGG | 0.713992 | 5_3:+18824593 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATCATTTTTTTTAGT+TGG | - | chr5_3:18823167-18823186 | Msa0803590:CDS | 10.0% |
| !!! | TGGATAATTTTTATTATTAT+TGG | - | chr5_3:18823192-18823211 | Msa0803590:CDS | 10.0% |
| !!! | GGATAATTTTTATTATTATT+GGG | - | chr5_3:18823193-18823212 | Msa0803590:CDS | 10.0% |
| !!! | GATAATTTTTATTATTATTG+GGG | - | chr5_3:18823194-18823213 | Msa0803590:CDS | 10.0% |
| !!! | CATAATTTTTTCTAATATAT+TGG | - | chr5_3:18823487-18823506 | Msa0803590:intron | 10.0% |
| !!! | TGTTTTGTTTTTTTTATTCT+TGG | - | chr5_3:18824450-18824469 | Msa0803590:intron | 15.0% |
| !! | ATTTCTCAACAAAATATAAT+GGG | + | chr5_3:18824612-18824631 | None:intergenic | 15.0% |
| !!! | TCATATTTCTTTGTATATTT+TGG | - | chr5_3:18824732-18824751 | Msa0803590:CDS | 15.0% |
| !!! | TATCTATTTCTTATTTTGAA+GGG | + | chr5_3:18824976-18824995 | None:intergenic | 15.0% |
| !!! | ATATCTATTTCTTATTTTGA+AGG | + | chr5_3:18824977-18824996 | None:intergenic | 15.0% |
| !! | AATAGATATAAAAGATAAAC+TGG | - | chr5_3:18824988-18825007 | Msa0803590:five_prime_UTR | 15.0% |
| !! | AATAAAAAAGCAATACTATA+TGG | - | chr5_3:18825758-18825777 | Msa0803590:five_prime_UTR | 15.0% |
| !! | TATCTCATTATGATTCAAAA+TGG | + | chr5_3:18823115-18823134 | None:intergenic | 20.0% |
| !! | TTTGAATCATAATGAGATAT+TGG | - | chr5_3:18823116-18823135 | Msa0803590:three_prime_UTR | 20.0% |
| !! | TTGAATCATAATGAGATATT+GGG | - | chr5_3:18823117-18823136 | Msa0803590:three_prime_UTR | 20.0% |
| !!! | ATCATTTTTTTTAGTTGGAT+TGG | - | chr5_3:18823172-18823191 | Msa0803590:CDS | 20.0% |
| !!! | TTTTTGTTGACATTCAATTT+TGG | - | chr5_3:18823254-18823273 | Msa0803590:intron | 20.0% |
| !!! | TTTTGTTGACATTCAATTTT+GGG | - | chr5_3:18823255-18823274 | Msa0803590:intron | 20.0% |
| !! | TTAATTGGGTTTGATATTTA+AGG | - | chr5_3:18823322-18823341 | Msa0803590:intron | 20.0% |
| !!! | AATAGAAACAATTCCAATTT+TGG | - | chr5_3:18823417-18823436 | Msa0803590:intron | 20.0% |
| !!! | AAAAAATTTGAGACATAGAA+TGG | + | chr5_3:18823513-18823532 | None:intergenic | 20.0% |
| !!! | TTCTATGTCTCAAATTTTTT+TGG | - | chr5_3:18823513-18823532 | Msa0803590:intron | 20.0% |
| !!! | ATTTTGCTATATTTGTAGTT+TGG | - | chr5_3:18824343-18824362 | Msa0803590:intron | 20.0% |
| !! | TTTCTCAACAAAATATAATG+GGG | + | chr5_3:18824611-18824630 | None:intergenic | 20.0% |
| !! | CATTTCTCAACAAAATATAA+TGG | + | chr5_3:18824613-18824632 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTTTTCTTGTTTA+TGG | - | chr5_3:18825079-18825098 | Msa0803590:five_prime_UTR | 20.0% |
| !! | TCTTTGTACAAATCAAAATT+AGG | - | chr5_3:18825259-18825278 | Msa0803590:five_prime_UTR | 20.0% |
| !! | CTTTGTACAAATCAAAATTA+GGG | - | chr5_3:18825260-18825279 | Msa0803590:five_prime_UTR | 20.0% |
| !! | AAATTACATTAGATGCATAA+TGG | + | chr5_3:18825637-18825656 | None:intergenic | 20.0% |
| !!! | TTTTACAATAAGAAGAGAAA+TGG | + | chr5_3:18825674-18825693 | None:intergenic | 20.0% |
| !!! | TTTTTTATTGTAGTAGTGAT+TGG | + | chr5_3:18825747-18825766 | None:intergenic | 20.0% |
| ! | GAAACAAAATTAAGGAAGAT+CGG | + | chr5_3:18822931-18822950 | None:intergenic | 25.0% |
| !!! | ATCTTCCTTAATTTTGTTTC+CGG | - | chr5_3:18822931-18822950 | Msa0803590:three_prime_UTR | 25.0% |
| !!! | TTTACTCAGAAGTATTTACT+AGG | - | chr5_3:18823056-18823075 | Msa0803590:three_prime_UTR | 25.0% |
| ! | ATTATTGGGGATTAATTTCT+TGG | - | chr5_3:18823207-18823226 | Msa0803590:intron | 25.0% |
| !! | CTTGAAGAAATTAATTTGAC+TGG | + | chr5_3:18823298-18823317 | None:intergenic | 25.0% |
| !!! | ATTTCTTCAAGTTGCTTAAT+TGG | - | chr5_3:18823307-18823326 | Msa0803590:intron | 25.0% |
| !!! | TTTCTTCAAGTTGCTTAATT+GGG | - | chr5_3:18823308-18823327 | Msa0803590:intron | 25.0% |
| ! | AATAAATTGATCAAAGGACA+AGG | + | chr5_3:18823351-18823370 | None:intergenic | 25.0% |
| ! | TGATGCAATAAATTGATCAA+AGG | + | chr5_3:18823357-18823376 | None:intergenic | 25.0% |
| ! | CAATTCATAAAAGCCAAAAT+TGG | + | chr5_3:18823433-18823452 | None:intergenic | 25.0% |
| !!! | CAATTTTGGCTTTTATGAAT+TGG | - | chr5_3:18823431-18823450 | Msa0803590:intron | 25.0% |
| !!! | TTGGTATTGATACCATTTTT+TGG | - | chr5_3:18823450-18823469 | Msa0803590:intron | 25.0% |
| !!! | TGGTATTGATACCATTTTTT+GGG | - | chr5_3:18823451-18823470 | Msa0803590:intron | 25.0% |
| ! | TAGAAGAAAAGTTGTAACTA+TGG | - | chr5_3:18823685-18823704 | Msa0803590:intron | 25.0% |
| ! | TTACCAGAAGAAAATTCATT+TGG | + | chr5_3:18824154-18824173 | None:intergenic | 25.0% |
| !! | AATTTTCTTCTGGTAAGATT+TGG | - | chr5_3:18824158-18824177 | Msa0803590:intron | 25.0% |
| !! | TTTGTCATGTATTATGCTTT+TGG | + | chr5_3:18824421-18824440 | None:intergenic | 25.0% |
| ! | TTCTCAACAAAATATAATGG+GGG | + | chr5_3:18824610-18824629 | None:intergenic | 25.0% |
| ! | AATGTTGAATATAAGCTCTT+TGG | - | chr5_3:18824880-18824899 | Msa0803590:CDS | 25.0% |
| !!! | AAAGATTTTTTTTTTAGGGG+AGG | + | chr5_3:18824906-18824925 | None:intergenic | 25.0% |
| ! | TCCCCTAAAAAAAAAATCTT+TGG | - | chr5_3:18824905-18824924 | Msa0803590:exon | 25.0% |
| !!! | GCCAAAGATTTTTTTTTTAG+GGG | + | chr5_3:18824909-18824928 | None:intergenic | 25.0% |
| !!! | GGCCAAAGATTTTTTTTTTA+GGG | + | chr5_3:18824910-18824929 | None:intergenic | 25.0% |
| !!! | AGGCCAAAGATTTTTTTTTT+AGG | + | chr5_3:18824911-18824930 | None:intergenic | 25.0% |
| ! | AAGATCTATTAATACTACTC+AGG | + | chr5_3:18824931-18824950 | None:intergenic | 25.0% |
| ! | GCTTAAATCATCTTATATGA+TGG | - | chr5_3:18825153-18825172 | Msa0803590:five_prime_UTR | 25.0% |
| ! | CAAATTAAGTTCAATTCTCT+TGG | + | chr5_3:18825180-18825199 | None:intergenic | 25.0% |
| ! | AACAAACAGCTCAATTAAAA+TGG | + | chr5_3:18825240-18825259 | None:intergenic | 25.0% |
| !! | AGTGGTAATGTAATTAATGA+TGG | - | chr5_3:18825285-18825304 | Msa0803590:five_prime_UTR | 25.0% |
| ! | TGAATGTATCAAATTAGTAC+AGG | + | chr5_3:18825331-18825350 | None:intergenic | 25.0% |
| ! | TATTCCAAAAACAATAAGCA+TGG | + | chr5_3:18825367-18825386 | None:intergenic | 25.0% |
| ! | ATCTTCATCTTGTATGATTA+AGG | - | chr5_3:18825568-18825587 | Msa0803590:five_prime_UTR | 25.0% |
| ! | TCAATTTGCAATGCAAAATT+TGG | - | chr5_3:18825696-18825715 | Msa0803590:five_prime_UTR | 25.0% |
| ! | CTAGAATAGAACATACTATA+TGG | - | chr5_3:18825721-18825740 | Msa0803590:five_prime_UTR | 25.0% |
| ! | TCAACTTCAATATTCTACTT+CGG | - | chr5_3:18825809-18825828 | Msa0803590:five_prime_UTR | 25.0% |
| CTTCTTCTAGATTTATAGAG+TGG | + | chr5_3:18822778-18822797 | None:intergenic | 30.0% | |
| !! | TGACATTCAATTTTGGGAAA+TGG | - | chr5_3:18823261-18823280 | Msa0803590:intron | 30.0% |
| !! | GACATTCAATTTTGGGAAAT+GGG | - | chr5_3:18823262-18823281 | Msa0803590:intron | 30.0% |
| AATTCTTTCTCAAGTTCCTT+GGG | - | chr5_3:18823541-18823560 | Msa0803590:intron | 30.0% | |
| AGCAAAATTGCAAAGCTTAA+GGG | + | chr5_3:18823663-18823682 | None:intergenic | 30.0% | |
| TAGCAAAATTGCAAAGCTTA+AGG | + | chr5_3:18823664-18823683 | None:intergenic | 30.0% | |
| ! | GATGGATTTCCATTAACAAT+AGG | + | chr5_3:18823767-18823786 | None:intergenic | 30.0% |
| ! | TTTGAAGTTTCCTTTGATGA+AGG | - | chr5_3:18823823-18823842 | Msa0803590:intron | 30.0% |
| TTGAAGTTTCCTTTGATGAA+GGG | - | chr5_3:18823824-18823843 | Msa0803590:intron | 30.0% | |
| TTATTTGTTCCCTTCATCAA+AGG | + | chr5_3:18823836-18823855 | None:intergenic | 30.0% | |
| TGAAGGGAACAAATAATCAA+AGG | - | chr5_3:18823840-18823859 | Msa0803590:intron | 30.0% | |
| CAAATAATCAAAGGAAGGTT+AGG | - | chr5_3:18823849-18823868 | Msa0803590:intron | 30.0% | |
| !!! | GTTGTTTTAGTATCATCTGA+TGG | - | chr5_3:18823920-18823939 | Msa0803590:intron | 30.0% |
| ! | CTACCAAATGAATTTTCTTC+TGG | - | chr5_3:18824148-18824167 | Msa0803590:intron | 30.0% |
| CTGTAAATGCAATGATGATT+AGG | - | chr5_3:18824377-18824396 | Msa0803590:intron | 30.0% | |
| TTCAAATGCATCAATCTACT+AGG | - | chr5_3:18824480-18824499 | Msa0803590:CDS | 30.0% | |
| !! | TCTACTAGGTTTTTGTTTCA+TGG | - | chr5_3:18824494-18824513 | Msa0803590:CDS | 30.0% |
| !!! | TTCTAGTCTTGTGTGTTTTT+TGG | - | chr5_3:18824584-18824603 | Msa0803590:CDS | 30.0% |
| AAGAGAAAGTTGTCACAAAA+TGG | + | chr5_3:18824653-18824672 | None:intergenic | 30.0% | |
| GTATAAGTATCTGTGCAAAT+TGG | + | chr5_3:18824828-18824847 | None:intergenic | 30.0% | |
| ATATACTTCAAACTGCAAGT+TGG | - | chr5_3:18825208-18825227 | Msa0803590:five_prime_UTR | 30.0% | |
| TATACTTCAAACTGCAAGTT+GGG | - | chr5_3:18825209-18825228 | Msa0803590:five_prime_UTR | 30.0% | |
| CAAATCAAAATTAGGGAAAG+TGG | - | chr5_3:18825267-18825286 | Msa0803590:five_prime_UTR | 30.0% | |
| TACAGGAAATAGAGTTAAGA+GGG | + | chr5_3:18825314-18825333 | None:intergenic | 30.0% | |
| AAAACAATAAGCATGGATAC+AGG | + | chr5_3:18825360-18825379 | None:intergenic | 30.0% | |
| ! | GTATCCATGCTTATTGTTTT+TGG | - | chr5_3:18825360-18825379 | Msa0803590:five_prime_UTR | 30.0% |
| GAAACAATTACATGGAACAA+TGG | - | chr5_3:18825406-18825425 | Msa0803590:five_prime_UTR | 30.0% | |
| ACGAGTTTCATAGTAACTGT+GGG | - | chr5_3:18822798-18822817 | Msa0803590:three_prime_UTR | 35.0% | |
| TCTTCTACACATTGTGTTAC+CGG | - | chr5_3:18822874-18822893 | Msa0803590:three_prime_UTR | 35.0% | |
| ! | ACCGGTTTATTTATTATCGC+CGG | - | chr5_3:18822892-18822911 | Msa0803590:three_prime_UTR | 35.0% |
| TCCGGCGATAATAAATAAAC+CGG | + | chr5_3:18822896-18822915 | None:intergenic | 35.0% | |
| AAAAATCCCAAATTTCTCGC+CGG | + | chr5_3:18822978-18822997 | None:intergenic | 35.0% | |
| ACACACACTCAAAGAATCAT+CGG | + | chr5_3:18823002-18823021 | None:intergenic | 35.0% | |
| !! | CTTAGCTTTAGGGTCAAAAT+TGG | + | chr5_3:18823033-18823052 | None:intergenic | 35.0% |
| !! | CAATTTTGACCCTAAAGCTA+AGG | - | chr5_3:18823031-18823050 | Msa0803590:three_prime_UTR | 35.0% |
| !! | GAGTAAAGACCTTAGCTTTA+GGG | + | chr5_3:18823043-18823062 | None:intergenic | 35.0% |
| ! | TGAGTAAAGACCTTAGCTTT+AGG | + | chr5_3:18823044-18823063 | None:intergenic | 35.0% |
| ATTGGGGATTAATTTCTTGG+AGG | - | chr5_3:18823210-18823229 | Msa0803590:intron | 35.0% | |
| CCATTCATGAACCCAAAAAA+TGG | + | chr5_3:18823465-18823484 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTGGGTTCATGAA+TGG | - | chr5_3:18823462-18823481 | Msa0803590:intron | 35.0% |
| CAATTCTTTCTCAAGTTCCT+TGG | - | chr5_3:18823540-18823559 | Msa0803590:intron | 35.0% | |
| !! | AGGAATTTTTCGGTATGAAC+CGG | + | chr5_3:18823603-18823622 | None:intergenic | 35.0% |
| GTTCATACCGAAAAATTCCT+TGG | - | chr5_3:18823603-18823622 | Msa0803590:intron | 35.0% | |
| ! | TAGGAAGCCAAGGAATTTTT+CGG | + | chr5_3:18823613-18823632 | None:intergenic | 35.0% |
| ! | CTATGAGTGATGAAGCATTT+AGG | + | chr5_3:18823632-18823651 | None:intergenic | 35.0% |
| GAGAAAGAGCCTATTGTTAA+TGG | - | chr5_3:18823755-18823774 | Msa0803590:intron | 35.0% | |
| ATGGAAATCCATCTTCTGAA+TGG | - | chr5_3:18823774-18823793 | Msa0803590:intron | 35.0% | |
| GAAAAACTCCATTCAGAAGA+TGG | + | chr5_3:18823785-18823804 | None:intergenic | 35.0% | |
| GGGAACAAATAATCAAAGGA+AGG | - | chr5_3:18823844-18823863 | Msa0803590:intron | 35.0% | |
| !! | GTTTTAGTATCATCTGATGG+TGG | - | chr5_3:18823923-18823942 | Msa0803590:intron | 35.0% |
| !! | ATGACTCAGATTGGTCTATT+GGG | - | chr5_3:18823975-18823994 | Msa0803590:intron | 35.0% |
| ! | TTAGTTCCTTGTTATAGACC+AGG | - | chr5_3:18824070-18824089 | Msa0803590:intron | 35.0% |
| TGTGTCTGTCATTATCATCA+TGG | - | chr5_3:18824306-18824325 | Msa0803590:intron | 35.0% | |
| GTGTCTGTCATTATCATCAT+GGG | - | chr5_3:18824307-18824326 | Msa0803590:intron | 35.0% | |
| ! | CAATGATGATTAGGCCTTTT+GGG | - | chr5_3:18824386-18824405 | Msa0803590:intron | 35.0% |
| TTTGGATTTAGCTACCCAAA+AGG | + | chr5_3:18824403-18824422 | None:intergenic | 35.0% | |
| TGTAACTATGCATGAAACTG+TGG | - | chr5_3:18824542-18824561 | Msa0803590:CDS | 35.0% | |
| TGAAACTGTGGATACTATAG+AGG | - | chr5_3:18824554-18824573 | Msa0803590:CDS | 35.0% | |
| ACTTACTCTCTCTATTGCTT+TGG | - | chr5_3:18824694-18824713 | Msa0803590:CDS | 35.0% | |
| ! | CATTTTTGTTCACAGCTTGT+GGG | + | chr5_3:18824762-18824781 | None:intergenic | 35.0% |
| TTGCACAGATACTTATACTC+TGG | - | chr5_3:18824830-18824849 | Msa0803590:CDS | 35.0% | |
| TTTGAAGGGAACAAATTGCA+GGG | + | chr5_3:18824962-18824981 | None:intergenic | 35.0% | |
| !! | TTTTGAAGGGAACAAATTGC+AGG | + | chr5_3:18824963-18824982 | None:intergenic | 35.0% |
| GTACAGGAAATAGAGTTAAG+AGG | + | chr5_3:18825315-18825334 | None:intergenic | 35.0% | |
| ! | ATACTGATTGAATTTGCAGC+TGG | - | chr5_3:18825384-18825403 | Msa0803590:five_prime_UTR | 35.0% |
| ATCAGAGTTTACAAACACAC+TGG | + | chr5_3:18825472-18825491 | None:intergenic | 35.0% | |
| ! | CTTCTAAAAGGTAGTCAGAA+AGG | + | chr5_3:18825595-18825614 | None:intergenic | 35.0% |
| !! | TGACTACCTTTTAGAAGTAG+AGG | - | chr5_3:18825598-18825617 | Msa0803590:five_prime_UTR | 35.0% |
| TTGCTTCCTCTACTTCTAAA+AGG | + | chr5_3:18825607-18825626 | None:intergenic | 35.0% | |
| GACGAGTTTCATAGTAACTG+TGG | - | chr5_3:18822797-18822816 | Msa0803590:three_prime_UTR | 40.0% | |
| CGCTACCGGAAACAAAATTA+AGG | + | chr5_3:18822939-18822958 | None:intergenic | 40.0% | |
| TTTCCGGTAGCGTAAATGAT+CGG | - | chr5_3:18822947-18822966 | Msa0803590:three_prime_UTR | 40.0% | |
| AATCCGATCATTTACGCTAC+CGG | + | chr5_3:18822953-18822972 | None:intergenic | 40.0% | |
| ! | GCGTAAATGATCGGATTTTC+CGG | - | chr5_3:18822956-18822975 | Msa0803590:three_prime_UTR | 40.0% |
| ! | GATTTTCCGGCGAGAAATTT+GGG | - | chr5_3:18822969-18822988 | Msa0803590:three_prime_UTR | 40.0% |
| GATGATTCTTTGAGTGTGTG+TGG | - | chr5_3:18823001-18823020 | Msa0803590:three_prime_UTR | 40.0% | |
| CTAGGTTTCTTCTTGTTCAC+TGG | - | chr5_3:18823074-18823093 | Msa0803590:three_prime_UTR | 40.0% | |
| ! | ATGAAGCATTTAGGAAGCCA+AGG | + | chr5_3:18823623-18823642 | None:intergenic | 40.0% |
| CTTTGACACGTTTGTCTTGT+TGG | - | chr5_3:18823714-18823733 | Msa0803590:intron | 40.0% | |
| ! | CACGTTTGTCTTGTTGGTTA+TGG | - | chr5_3:18823720-18823739 | Msa0803590:intron | 40.0% |
| ! | TTGTCTTGTTGGTTATGGAG+AGG | - | chr5_3:18823725-18823744 | Msa0803590:intron | 40.0% |
| TTGGTTATGGAGAGGTAGTA+AGG | - | chr5_3:18823733-18823752 | Msa0803590:intron | 40.0% | |
| AAAGGAAGGTTAGGAAGAAG+TGG | - | chr5_3:18823858-18823877 | Msa0803590:intron | 40.0% | |
| !! | TTAGTATCATCTGATGGTGG+TGG | - | chr5_3:18823926-18823945 | Msa0803590:intron | 40.0% |
| CTGAATCTGATGACTCAGAT+TGG | - | chr5_3:18823966-18823985 | Msa0803590:intron | 40.0% | |
| !! | GATGACTCAGATTGGTCTAT+TGG | - | chr5_3:18823974-18823993 | Msa0803590:intron | 40.0% |
| ! | CTCTGAAAATCAGAACCATG+AGG | + | chr5_3:18824010-18824029 | None:intergenic | 40.0% |
| TTGCAACCTGGTCTATAACA+AGG | + | chr5_3:18824079-18824098 | None:intergenic | 40.0% | |
| TTGTTATAGACCAGGTTGCA+AGG | - | chr5_3:18824078-18824097 | Msa0803590:intron | 40.0% | |
| GACACACACATTTCTTCATC+AGG | + | chr5_3:18824292-18824311 | None:intergenic | 40.0% | |
| ! | GCAATGATGATTAGGCCTTT+TGG | - | chr5_3:18824385-18824404 | Msa0803590:intron | 40.0% |
| !! | CCATTTTTGTTCACAGCTTG+TGG | + | chr5_3:18824763-18824782 | None:intergenic | 40.0% |
| CCACAAGCTGTGAACAAAAA+TGG | - | chr5_3:18824760-18824779 | Msa0803590:CDS | 40.0% | |
| TGACAGCACTAACAACATAG+AGG | + | chr5_3:18824802-18824821 | None:intergenic | 40.0% | |
| TGCAGCTGGAAACAATTACA+TGG | - | chr5_3:18825398-18825417 | Msa0803590:five_prime_UTR | 40.0% | |
| AAGATGAAGATGCGTGTGTT+TGG | + | chr5_3:18825559-18825578 | None:intergenic | 40.0% | |
| TTCCGTGTAATTCGCGAGTT+AGG | - | chr5_3:18822827-18822846 | Msa0803590:three_prime_UTR | 45.0% | |
| TCCGTGTAATTCGCGAGTTA+GGG | - | chr5_3:18822828-18822847 | Msa0803590:three_prime_UTR | 45.0% | |
| ACCCTAACTCGCGAATTACA+CGG | + | chr5_3:18822832-18822851 | None:intergenic | 45.0% | |
| ! | GGATTTTCCGGCGAGAAATT+TGG | - | chr5_3:18822968-18822987 | Msa0803590:three_prime_UTR | 45.0% |
| GATATCTCTGCACACAACTG+CGG | + | chr5_3:18823581-18823600 | None:intergenic | 45.0% | |
| CAGTTGTGTGCAGAGATATC+CGG | - | chr5_3:18823581-18823600 | Msa0803590:intron | 45.0% | |
| TTAGGAAGAAGTGGCAGAGT+AGG | - | chr5_3:18823867-18823886 | Msa0803590:intron | 45.0% | |
| TAGGAAGAAGTGGCAGAGTA+GGG | - | chr5_3:18823868-18823887 | Msa0803590:intron | 45.0% | |
| !! | ACTCAGATTGGTCTATTGGG+TGG | - | chr5_3:18823978-18823997 | Msa0803590:intron | 45.0% |
| ACCATCGATCAAACTCTAGC+CGG | + | chr5_3:18825505-18825524 | None:intergenic | 45.0% | |
| TAGAGTTTGATCGATGGTCG+TGG | - | chr5_3:18825507-18825526 | Msa0803590:five_prime_UTR | 45.0% | |
| GATCGGAGCGAGAATTTCTC+CGG | + | chr5_3:18822914-18822933 | None:intergenic | 50.0% | |
| TCTCAAGTTCCTTGGGTGAG+TGG | - | chr5_3:18823548-18823567 | Msa0803590:intron | 50.0% | |
| !! | GTATCATCTGATGGTGGTGG+TGG | - | chr5_3:18823929-18823948 | Msa0803590:intron | 50.0% |
| ATTGGGTGGTTAGAGCCTCA+TGG | - | chr5_3:18823992-18824011 | Msa0803590:intron | 50.0% | |
| CCTTCAACTTCCTTGCAACC+TGG | + | chr5_3:18824091-18824110 | None:intergenic | 50.0% | |
| CCAGGTTGCAAGGAAGTTGA+AGG | - | chr5_3:18824088-18824107 | Msa0803590:intron | 50.0% | |
| AACTCTGATTTCCACTGCGC+CGG | - | chr5_3:18825483-18825502 | Msa0803590:five_prime_UTR | 50.0% | |
| GTTTGATCGATGGTCGTGGA+CGG | - | chr5_3:18825511-18825530 | Msa0803590:five_prime_UTR | 50.0% | |
| GGAGACTAACCACTCACCCA+AGG | + | chr5_3:18823560-18823579 | None:intergenic | 55.0% | |
| AGTGGCAGAGTAGGGAAGAG+AGG | - | chr5_3:18823876-18823895 | Msa0803590:intron | 55.0% | |
| !! | GGTGGTGGTGGTTGTTTGTC+AGG | - | chr5_3:18823941-18823960 | Msa0803590:intron | 55.0% |
| GCCGGCTAGAGTTTGATCGA+TGG | - | chr5_3:18825501-18825520 | Msa0803590:five_prime_UTR | 55.0% | |
| TCAAACTCTAGCCGGCGCAG+TGG | + | chr5_3:18825497-18825516 | None:intergenic | 60.0% | |
| TGATCGATGGTCGTGGACGG+TGG | - | chr5_3:18825514-18825533 | Msa0803590:five_prime_UTR | 60.0% | |
| CGATGGTCGTGGACGGTGGA+AGG | - | chr5_3:18825518-18825537 | Msa0803590:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 18822757 | 18825865 | 18822757 | ID=Msa0803590;Name=Msa0803590 |
| chr5_3 | mRNA | 18822757 | 18825865 | 18822757 | ID=Msa0803590-mRNA-1;Parent=Msa0803590;Name=Msa0803590-mRNA-1;_AED=0.00;_eAED=0.00;_QI=947|1|1|1|1|1|2|407|173 |
| chr5_3 | exon | 18822757 | 18823219 | 18822757 | ID=Msa0803590-mRNA-1:exon:7732;Parent=Msa0803590-mRNA-1 |
| chr5_3 | exon | 18824453 | 18825865 | 18824453 | ID=Msa0803590-mRNA-1:exon:7731;Parent=Msa0803590-mRNA-1 |
| chr5_3 | five_prime_UTR | 18824919 | 18825865 | 18824919 | ID=Msa0803590-mRNA-1:five_prime_utr;Parent=Msa0803590-mRNA-1 |
| chr5_3 | CDS | 18824453 | 18824918 | 18824453 | ID=Msa0803590-mRNA-1:cds;Parent=Msa0803590-mRNA-1 |
| chr5_3 | CDS | 18823164 | 18823219 | 18823164 | ID=Msa0803590-mRNA-1:cds;Parent=Msa0803590-mRNA-1 |
| chr5_3 | three_prime_UTR | 18822757 | 18823163 | 18822757 | ID=Msa0803590-mRNA-1:three_prime_utr;Parent=Msa0803590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
