AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029070 MtrunA17_Chr7g0249531 99.027 411 2 2 1 410 1 410 0.0 799
Msa1029070 MtrunA17_Chr4g0021001 30.348 201 105 7 1 190 1 177 8.25e-16 78.2
Msa1029070 MtrunA17_Chr4g0021001 27.941 136 92 2 210 344 135 265 3.31e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029070 AT3G03340.2 76.829 410 87 4 1 410 79 480 0.0 540
Msa1029070 AT3G03340.1 76.829 410 87 4 1 410 1 402 0.0 539
Msa1029070 AT5G17440.1 81.250 320 57 2 1 320 1 317 0.0 524
Msa1029070 AT3G03340.3 80.938 320 58 2 1 320 1 317 0.0 521
Msa1029070 AT5G17440.2 80.634 284 52 2 1 284 1 281 1.04e-163 461
Msa1029070 AT5G51410.2 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1029070 AT5G51410.1 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1029070 AT5G51410.4 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1029070 AT5G51410.3 36.111 180 90 6 1 159 1 176 1.80e-16 80.5
Msa1029070 AT5G51410.5 36.111 180 90 6 1 159 1 176 1.80e-16 80.5

Find 130 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACATCCATAAGATTTA+TGG 0.151914 7_1:+62332045 None:intergenic
TTGGACAACTCAAGTATTTC+AGG 0.177903 7_1:+62336709 None:intergenic
TTGAAAGAAGCTGATAAATT+TGG 0.226607 7_1:-62336670 Msa1029070:intron
CGTCGATTAGCTGATCATTT+TGG 0.228452 7_1:-62333457 Msa1029070:CDS
GGGGTAAGTGTGGGACTATT+TGG 0.241411 7_1:+62337475 None:intergenic
ACTGAAACTCGATGAGTTTA+GGG 0.260026 7_1:+62337427 None:intergenic
AACTGAAACTCGATGAGTTT+AGG 0.268287 7_1:+62337426 None:intergenic
GCTTAGGTGTTGCAAAATTA+TGG 0.276294 7_1:-62331931 Msa1029070:three_prime_UTR
TGAAATTGCAATTGCGGCTT+TGG 0.289328 7_1:+62336859 None:intergenic
TAGATGCATTCAACAAAGAT+AGG 0.295715 7_1:-62335946 Msa1029070:CDS
GAAGCAACTGGACGTTCTTA+TGG 0.297108 7_1:-62337370 Msa1029070:CDS
GGTGCTAGCGGTGGTGGATT+TGG 0.300979 7_1:+62335902 None:intergenic
AGCAGCTGCCATAAATCTTA+TGG 0.318878 7_1:-62332053 Msa1029070:three_prime_UTR
TTTGGAGGGAAACTTCATTT+AGG 0.335267 7_1:-62333439 Msa1029070:CDS
GGTGAATGTGATAGGAAAAT+TGG 0.348156 7_1:-62336914 Msa1029070:CDS
TCTAATTTGTAATATTCTCT+TGG 0.351038 7_1:-62331881 Msa1029070:three_prime_UTR
TCACGAACTCTTTCAATTAA+CGG 0.377204 7_1:-62337259 Msa1029070:intron
GATGTTATAGATAAGCTTAT+TGG 0.385739 7_1:-62336935 Msa1029070:CDS
ATCTCTTGTGTTCGAGCATC+GGG 0.391648 7_1:+62335863 None:intergenic
CATGCACTTGCAGATCTTGA+AGG 0.403956 7_1:-62336227 Msa1029070:intron
CGAAAAGCATGGATGCTATA+CGG 0.405750 7_1:-62337392 Msa1029070:exon
AGCTGCAATGAGTGAACCTT+AGG 0.406940 7_1:+62337115 None:intergenic
GGAAGGGGTGCTAGCGGTGG+TGG 0.407725 7_1:+62335896 None:intergenic
ATGGTTTGATGTTGCTTTGC+GGG 0.411277 7_1:-62331912 Msa1029070:three_prime_UTR
TTGAAGAAGGCTGAGGATCT+TGG 0.418272 7_1:-62335827 Msa1029070:intron
CTCGTAACTATCAGTCCCTT+TGG 0.422514 7_1:+62336970 None:intergenic
ATCCAATGGTGGCTCCTGCC+TGG 0.424634 7_1:+62334066 None:intergenic
AAGCAACTGGACGTTCTTAT+GGG 0.432251 7_1:-62337369 Msa1029070:CDS
CCACGTTCACGGTCCCTACT+AGG 0.437974 7_1:+62332528 None:intergenic
AAGATAACTTACTTGAAGTT+CGG 0.438627 7_1:+62333390 None:intergenic
TGCAGATCTTGAAGGCTTGT+CGG 0.442278 7_1:-62336219 Msa1029070:intron
AACGGAGTAGGGATCGTGAC+AGG 0.443961 7_1:-62332554 Msa1029070:CDS
GGATGCTATACGGAAGCAAC+TGG 0.452696 7_1:-62337382 Msa1029070:CDS
CATCTCTTGTGTTCGAGCAT+CGG 0.458767 7_1:+62335862 None:intergenic
GGTGGATTTGGCAGAGGTTG+AGG 0.460137 7_1:+62335914 None:intergenic
CATTGTCTCGCCCTCGCTCA+TGG 0.461773 7_1:+62332499 None:intergenic
ATCTTGTTCAAGTAGTGGGG+TGG 0.461954 7_1:+62337454 None:intergenic
AATACTTGCGGTTAACTTCA+CGG 0.467208 7_1:+62337325 None:intergenic
TTAGATCTTGTTCAAGTAGT+GGG 0.467358 7_1:+62337450 None:intergenic
GTGGGTGTTGAACCTTGTCT+TGG 0.469863 7_1:-62332007 Msa1029070:three_prime_UTR
AGCTTATTGGTGAATGTGAT+AGG 0.470005 7_1:-62336922 Msa1029070:CDS
AATTAAAAGAGCAGACAAAC+AGG 0.474940 7_1:-62336156 Msa1029070:intron
TTCCAGGCAGGAGCCACCAT+TGG 0.478074 7_1:-62334068 Msa1029070:CDS
GGATATGAAGATTCGAGCTC+TGG 0.479032 7_1:-62336198 Msa1029070:CDS
ATCACAGCTTCCTTCCAGGC+AGG 0.481581 7_1:-62334080 Msa1029070:intron
AGGGCAACCAAGTCGATGAC+AGG 0.489701 7_1:+62331813 None:intergenic
CATATCCACGGTCTCTATCA+TGG 0.494619 7_1:+62332448 None:intergenic
CATGGCTCTCACCACGTTCA+CGG 0.499053 7_1:+62332517 None:intergenic
CTACGTGTGTGCGACATTTG+TGG 0.501100 7_1:-62333822 Msa1029070:CDS
ATCGTGACAGGGAGCCTAGT+AGG 0.501423 7_1:-62332542 Msa1029070:CDS
AGATGCATTCAACAAAGATA+GGG 0.509438 7_1:-62335945 Msa1029070:CDS
TTCAGTATCCGAAGTTACTC+AGG 0.515579 7_1:-62336840 Msa1029070:CDS
AATGGTGGCTCCTGCCTGGA+AGG 0.520384 7_1:+62334070 None:intergenic
GAAGTTCGGCCAACTTCTCA+CGG 0.524583 7_1:+62333404 None:intergenic
AGATTGATCGTCTTGATGAC+AGG 0.526184 7_1:-62332684 Msa1029070:CDS
GTTAGATCTTGTTCAAGTAG+TGG 0.527033 7_1:+62337449 None:intergenic
TATGCAAATCCGTGAGAAGT+TGG 0.527127 7_1:-62333413 Msa1029070:CDS
GATAAATGAAAAGTTGAAGA+AGG 0.528067 7_1:-62335840 Msa1029070:CDS
CATCAAGACGATCAATCTTA+CGG 0.529702 7_1:+62332689 None:intergenic
ATTGAACAATATCTGAATGA+TGG 0.531182 7_1:-62331965 Msa1029070:three_prime_UTR
CGAGCATCGGGAGTAACTAC+AGG 0.532576 7_1:+62335875 None:intergenic
TCTTGTTCAAGTAGTGGGGT+GGG 0.533880 7_1:+62337455 None:intergenic
TAGTGGGGTGGGGTAAGTGT+GGG 0.538484 7_1:+62337466 None:intergenic
ACAGATCAAAAGAACGGAGT+AGG 0.538832 7_1:-62332566 Msa1029070:intron
GTTTGCCGTCTTTATCTCGT+CGG 0.541242 7_1:-62337291 Msa1029070:CDS
GATGGATGTAACTTGAGCTT+AGG 0.542349 7_1:-62331947 Msa1029070:three_prime_UTR
GTAGTGGGGTGGGGTAAGTG+TGG 0.548250 7_1:+62337465 None:intergenic
ATAAGATGTGTAGTCTAGGT+GGG 0.550978 7_1:-62332025 Msa1029070:three_prime_UTR
TATGGTTTGATGTTGCTTTG+CGG 0.552375 7_1:-62331913 Msa1029070:three_prime_UTR
TAGTTACGAGAGGGAGTTGG+AGG 0.553553 7_1:-62336957 Msa1029070:CDS
TTTGTATGAACAGGTGAGCA+AGG 0.553610 7_1:-62334335 Msa1029070:intron
TCGTGACAGGGAGCCTAGTA+GGG 0.554514 7_1:-62332541 Msa1029070:CDS
TGATAGTTACGAGAGGGAGT+TGG 0.555551 7_1:-62336960 Msa1029070:CDS
AGAGGCTGAAGCACTTAAGA+AGG 0.556383 7_1:-62334282 Msa1029070:intron
ACCGTGGATATGATCGAGAT+CGG 0.556484 7_1:-62332437 Msa1029070:CDS
ATGAGGAAGCTAAATCCAAA+GGG 0.556688 7_1:-62336985 Msa1029070:CDS
CAGATCAAAAGAACGGAGTA+GGG 0.561355 7_1:-62332565 Msa1029070:CDS
GGATACTGAAATTGCAATTG+CGG 0.561931 7_1:+62336853 None:intergenic
TGATGAGGCACAGAAAGCAT+TGG 0.562627 7_1:-62334306 Msa1029070:CDS
CTTGTTCAAGTAGTGGGGTG+GGG 0.565857 7_1:+62337456 None:intergenic
TGTGATAAGATGTGTAGTCT+AGG 0.567273 7_1:-62332029 Msa1029070:three_prime_UTR
CTAGAGATTATGATCGTCAC+AGG 0.572592 7_1:-62332353 Msa1029070:intron
CCGTGGATATGATCGAGATC+GGG 0.578018 7_1:-62332436 Msa1029070:CDS
AGCGGTGGTGGATTTGGCAG+AGG 0.578278 7_1:+62335908 None:intergenic
GGATATGGGTCCTTGCCCTA+AGG 0.580760 7_1:-62337131 Msa1029070:CDS
GCGACTTCTTGAATCATAGC+GGG 0.581845 7_1:+62332401 None:intergenic
TAGATCTTGTTCAAGTAGTG+GGG 0.582349 7_1:+62337451 None:intergenic
GTAGGAGCAGAGATCGTGAC+AGG 0.584050 7_1:-62332473 Msa1029070:CDS
TAGAGCTCTTAAGCGTCTTG+AGG 0.585351 7_1:-62336891 Msa1029070:CDS
TCGGGAGTAACTACAGGAAG+GGG 0.585363 7_1:+62335881 None:intergenic
GCTGCAATGAGTGAACCTTA+GGG 0.585660 7_1:+62337116 None:intergenic
TGAAAAGTTGAAGAAGGCTG+AGG 0.585802 7_1:-62335834 Msa1029070:CDS
TATGAGGAAGCTAAATCCAA+AGG 0.585843 7_1:-62336986 Msa1029070:CDS
GGCACAGAAAGCATTGGAAG+AGG 0.587050 7_1:-62334300 Msa1029070:CDS
ATCGGGAGTAACTACAGGAA+GGG 0.587672 7_1:+62335880 None:intergenic
TTGTTCCAGATCGAAAAGCA+TGG 0.594445 7_1:-62337403 Msa1029070:exon
ACAGGAAGGGGTGCTAGCGG+TGG 0.594793 7_1:+62335893 None:intergenic
GCTCTCGAGATCGTGACCTC+CGG 0.595184 7_1:+62332379 None:intergenic
CATCGGGAGTAACTACAGGA+AGG 0.598826 7_1:+62335879 None:intergenic
AAAATTATTTGTCCAAGACA+AGG 0.599616 7_1:+62331995 None:intergenic
TCGAGCTCTGGAGATTGTAG+AGG 0.600295 7_1:-62336186 Msa1029070:CDS
AATCACCACCTGAGTAACTT+CGG 0.604512 7_1:+62336832 None:intergenic
GTTAATTGAAAGAGTTCGTG+AGG 0.604661 7_1:+62337261 None:intergenic
CCTAGTAGGGACCGTGAACG+TGG 0.608938 7_1:-62332528 Msa1029070:CDS
GTGGTGAGAGCCATGAGCGA+GGG 0.612251 7_1:-62332509 Msa1029070:CDS
AATGAGTGAACCTTAGGGCA+AGG 0.622000 7_1:+62337121 None:intergenic
GATAAGATGTGTAGTCTAGG+TGG 0.624297 7_1:-62332026 Msa1029070:three_prime_UTR
CCCGATCTCGATCATATCCA+CGG 0.629250 7_1:+62332436 None:intergenic
CGTGGTGAGAGCCATGAGCG+AGG 0.635589 7_1:-62332510 Msa1029070:CDS
AGTACACAGCTGCTGATGTG+CGG 0.638522 7_1:-62334036 Msa1029070:CDS
AAAGACCGACGAGATAAAGA+CGG 0.644940 7_1:+62337286 None:intergenic
ATATGCACAGATCAAAAGAA+CGG 0.645466 7_1:-62332572 Msa1029070:intron
CTTATGGGAGCCAATCGTAA+CGG 0.646630 7_1:-62337354 Msa1029070:CDS
ACGGAGTAGGGATCGTGACA+GGG 0.652302 7_1:-62332553 Msa1029070:CDS
GGGCAACCAAGTCGATGACA+GGG 0.652657 7_1:+62331814 None:intergenic
AGTATCCGAAGTTACTCAGG+TGG 0.657827 7_1:-62336837 Msa1029070:intron
GTGTACTTCGAAGAATCCAA+TGG 0.658279 7_1:+62334052 None:intergenic
CATCGCGATCGTAATACTTG+CGG 0.660494 7_1:+62337313 None:intergenic
GAGGGCGAGACAATGATCGT+AGG 0.664594 7_1:-62332491 Msa1029070:CDS
AGGGACTGATAGTTACGAGA+GGG 0.667101 7_1:-62336966 Msa1029070:CDS
TGAGCAAGGATTGATTGATG+AGG 0.675277 7_1:-62334321 Msa1029070:CDS
TACTTCGAAGAATCCAATGG+TGG 0.684414 7_1:+62334055 None:intergenic
TTGATCGTCTTGATGACAGG+AGG 0.686646 7_1:-62332681 Msa1029070:intron
TTAATTGAAAGAGTTCGTGA+GGG 0.691313 7_1:+62337262 None:intergenic
ATGATTCAAGAAGTCGCCGG+AGG 0.695304 7_1:-62332395 Msa1029070:CDS
AGGCACCATGATAGAGACCG+TGG 0.701940 7_1:-62332453 Msa1029070:CDS
AAGGGACTGATAGTTACGAG+AGG 0.704405 7_1:-62336967 Msa1029070:CDS
ACTACAGGAAGGGGTGCTAG+CGG 0.704539 7_1:+62335890 None:intergenic
GGCGACTTCTTGAATCATAG+CGG 0.719406 7_1:+62332400 None:intergenic
GCTATGATTCAAGAAGTCGC+CGG 0.727551 7_1:-62332398 Msa1029070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAATGTAAATAAAA+AGG + chr7_1:62334917-62334936 None:intergenic 10.0%
!!! TCAAATTTTTATATTATCTA+TGG - chr7_1:62337143-62337162 Msa1029070:intron 10.0%
!!! GATCTAATTTTCATTTTATT+TGG - chr7_1:62334652-62334671 Msa1029070:intron 15.0%
!!! TAAACAATCTGTTTTAAAAT+AGG + chr7_1:62335938-62335957 None:intergenic 15.0%
!!! AAATTAGAAATTTTAGAATG+TGG - chr7_1:62335990-62336009 Msa1029070:intron 15.0%
!! CATTATTATATTTGTAATTG+TGG - chr7_1:62336167-62336186 Msa1029070:CDS 15.0%
!!! TTTTCATTCTTTTCAGAAAA+TGG - chr7_1:62332119-62332138 Msa1029070:intron 20.0%
!!! TTCAATTGTTATTGTAGTTT+TGG - chr7_1:62332228-62332247 Msa1029070:intron 20.0%
!!! TTAACTGTTTTTTAGATATG+AGG - chr7_1:62332269-62332288 Msa1029070:intron 20.0%
!! AATTAATGCATGTTTGATAT+TGG + chr7_1:62332477-62332496 None:intergenic 20.0%
!! AAAGATGAGAGAATAATATA+GGG - chr7_1:62332693-62332712 Msa1029070:CDS 20.0%
!! GTATGATATGAATGAATAAA+GGG - chr7_1:62332833-62332852 Msa1029070:intron 20.0%
!! TATGATATGAATGAATAAAG+GGG - chr7_1:62332834-62332853 Msa1029070:intron 20.0%
!! TTTATTCCTTACTCAAAATT+TGG - chr7_1:62332977-62332996 Msa1029070:intron 20.0%
!! TTATTCCTTACTCAAAATTT+GGG - chr7_1:62332978-62332997 Msa1029070:intron 20.0%
!! GAGTGAAATTCAATAAATAA+GGG + chr7_1:62333698-62333717 None:intergenic 20.0%
!! CCTTTATTAATTGTAGTTAT+TGG + chr7_1:62333733-62333752 None:intergenic 20.0%
!! CCAATAACTACAATTAATAA+AGG - chr7_1:62333730-62333749 Msa1029070:intron 20.0%
!!! TTGTTTAAAATAAAACTCAG+AGG - chr7_1:62334377-62334396 Msa1029070:intron 20.0%
!! ATTGTATTATTTGTATGAAC+AGG - chr7_1:62334927-62334946 Msa1029070:intron 20.0%
!! ATTCCTAGTTAGAAATTTAT+AGG - chr7_1:62335707-62335726 Msa1029070:intron 20.0%
!! TTCCTAGTTAGAAATTTATA+GGG - chr7_1:62335708-62335727 Msa1029070:intron 20.0%
!! TAATAATAAAGAAATGGTCA+CGG + chr7_1:62336953-62336972 None:intergenic 20.0%
!! AGGAAGTAATAATAAAGAAA+TGG + chr7_1:62336959-62336978 None:intergenic 20.0%
!!! TCTAATTTGTAATATTCTCT+TGG - chr7_1:62337390-62337409 Msa1029070:exon 20.0%
!!! ATGCACAATTTTGTTTTTAA+GGG + chr7_1:62337480-62337499 None:intergenic 20.0%
!!! AATGCACAATTTTGTTTTTA+AGG + chr7_1:62337481-62337500 None:intergenic 20.0%
!! TTCTTTTCAGAAAATGGATA+TGG - chr7_1:62332125-62332144 Msa1029070:intron 25.0%
!! TCTTTTCAGAAAATGGATAT+GGG - chr7_1:62332126-62332145 Msa1029070:intron 25.0%
! GATGTTATAGATAAGCTTAT+TGG - chr7_1:62332336-62332355 Msa1029070:intron 25.0%
!!! CAACTTTTCTTTGATTTCTT+TGG + chr7_1:62332584-62332603 None:intergenic 25.0%
! TTGAAAGAAGCTGATAAATT+TGG - chr7_1:62332601-62332620 Msa1029070:intron 25.0%
! CAAAGATGAGAGAATAATAT+AGG - chr7_1:62332692-62332711 Msa1029070:CDS 25.0%
! AAGATGAGAGAATAATATAG+GGG - chr7_1:62332694-62332713 Msa1029070:CDS 25.0%
! GGTATGATATGAATGAATAA+AGG - chr7_1:62332832-62332851 Msa1029070:intron 25.0%
!!! GTTTTGTTTATTCTTTTCAC+TGG - chr7_1:62333010-62333029 Msa1029070:intron 25.0%
! GATAAATGAAAAGTTGAAGA+AGG - chr7_1:62333431-62333450 Msa1029070:CDS 25.0%
! GTCTCAAAATAATTGTCATT+TGG - chr7_1:62333638-62333657 Msa1029070:intron 25.0%
!! ATAAATAAGGGTATATGAGA+GGG + chr7_1:62333686-62333705 None:intergenic 25.0%
!! AATAAATAAGGGTATATGAG+AGG + chr7_1:62333687-62333706 None:intergenic 25.0%
! GGAGTGAAATTCAATAAATA+AGG + chr7_1:62333699-62333718 None:intergenic 25.0%
! CTCAATTTAATTGTCACATT+TGG + chr7_1:62333830-62333849 None:intergenic 25.0%
! ATGTGACAATTAAATTGAGA+CGG - chr7_1:62333831-62333850 Msa1029070:CDS 25.0%
! CTTCTTCTGAATAGAATTAA+TGG + chr7_1:62333978-62333997 None:intergenic 25.0%
!! ATTCTATTCAGAAGAAGTTT+TGG - chr7_1:62333981-62334000 Msa1029070:intron 25.0%
! AAAACAAATGGATCTGAAAA+GGG + chr7_1:62334248-62334267 None:intergenic 25.0%
! ATTCCTTGAAACAAAACAAA+TGG + chr7_1:62334260-62334279 None:intergenic 25.0%
! AAGTCATAACTCAAATGTAT+CGG - chr7_1:62334346-62334365 Msa1029070:intron 25.0%
! TACTAGCAATTTGAACTATT+TGG - chr7_1:62334466-62334485 Msa1029070:intron 25.0%
! TTGAACTATTTGGACTTAAT+AGG - chr7_1:62334476-62334495 Msa1029070:intron 25.0%
! TGCAGCATTAGTATTAATTA+AGG - chr7_1:62334591-62334610 Msa1029070:intron 25.0%
! TTAAAACAGTAATACTGGAT+AGG + chr7_1:62334678-62334697 None:intergenic 25.0%
!!! TCTTGAAGTTTTTTTTGCTA+GGG - chr7_1:62335529-62335548 Msa1029070:intron 25.0%
! TTCCCTATAAATTTCTAACT+AGG + chr7_1:62335713-62335732 None:intergenic 25.0%
! AAGATAACTTACTTGAAGTT+CGG + chr7_1:62335884-62335903 None:intergenic 25.0%
! AGGATAAAATTACACAAGTT+TGG + chr7_1:62335918-62335937 None:intergenic 25.0%
!!! TTTCTGGAATCATGTATAAA+AGG - chr7_1:62336103-62336122 Msa1029070:intron 25.0%
! ACATAATAACATCCTATGAT+GGG + chr7_1:62336261-62336280 None:intergenic 25.0%
! AACATAATAACATCCTATGA+TGG + chr7_1:62336262-62336281 None:intergenic 25.0%
! ACTTCAAAATAACCAACATT+TGG + chr7_1:62336362-62336381 None:intergenic 25.0%
! ATACAAACCTTTGATTCAAT+TGG - chr7_1:62336502-62336521 Msa1029070:intron 25.0%
! CTAAACGTAAAAAACATATC+TGG - chr7_1:62336628-62336647 Msa1029070:intron 25.0%
! TATCACATCCATAAGATTTA+TGG + chr7_1:62337229-62337248 None:intergenic 25.0%
! AAAATTATTTGTCCAAGACA+AGG + chr7_1:62337279-62337298 None:intergenic 25.0%
! ATTGAACAATATCTGAATGA+TGG - chr7_1:62337306-62337325 Msa1029070:CDS 25.0%
TTAGATCTTGTTCAAGTAGT+GGG + chr7_1:62331824-62331843 None:intergenic 30.0%
TTAATTGAAAGAGTTCGTGA+GGG + chr7_1:62332012-62332031 None:intergenic 30.0%
TCACGAACTCTTTCAATTAA+CGG - chr7_1:62332012-62332031 Msa1029070:three_prime_UTR 30.0%
!!! GTTATTGTAGTTTTGGATAG+TGG - chr7_1:62332235-62332254 Msa1029070:intron 30.0%
!! GTTAAGTTCTGCTTAGTTTT+TGG - chr7_1:62332654-62332673 Msa1029070:intron 30.0%
AGATGAGAGAATAATATAGG+GGG - chr7_1:62332695-62332714 Msa1029070:CDS 30.0%
AGTTGAGACATGAAAGATTT+GGG + chr7_1:62332774-62332793 None:intergenic 30.0%
ATTCATTCATATCATACCCA+CGG + chr7_1:62332830-62332849 None:intergenic 30.0%
!! CAAATCAACTTGATTAGCTT+TGG - chr7_1:62332928-62332947 Msa1029070:intron 30.0%
!! ATGTTCCCAAATTTTGAGTA+AGG + chr7_1:62332986-62333005 None:intergenic 30.0%
AATTAAAAGAGCAGACAAAC+AGG - chr7_1:62333115-62333134 Msa1029070:intron 30.0%
AACTTTACTGTCTAACGAAT+TGG + chr7_1:62333206-62333225 None:intergenic 30.0%
! TCTGACTGATCACTATTTTA+CGG - chr7_1:62333231-62333250 Msa1029070:intron 30.0%
TAGATGCATTCAACAAAGAT+AGG - chr7_1:62333325-62333344 Msa1029070:intron 30.0%
AGATGCATTCAACAAAGATA+GGG - chr7_1:62333326-62333345 Msa1029070:intron 30.0%
TAGTTATTGGAGTAGTTAAG+TGG + chr7_1:62333720-62333739 None:intergenic 30.0%
! ACCAACCTAATCATTTTCTT+AGG - chr7_1:62333791-62333810 Msa1029070:intron 30.0%
TCCTAAGAAAATGATTAGGT+TGG + chr7_1:62333795-62333814 None:intergenic 30.0%
TGGTTCCTAAGAAAATGATT+AGG + chr7_1:62333799-62333818 None:intergenic 30.0%
TTTCTTCATCCAATACACAT+AGG - chr7_1:62334042-62334061 Msa1029070:CDS 30.0%
GACTTAAAACCTATGTGTAT+TGG + chr7_1:62334054-62334073 None:intergenic 30.0%
!!! ATACACATAGGTTTTAAGTC+CGG - chr7_1:62334054-62334073 Msa1029070:CDS 30.0%
GACATATTAAAGAACAGACA+AGG + chr7_1:62334168-62334187 None:intergenic 30.0%
ACATTTCCTAAACAAGTCAA+AGG - chr7_1:62334192-62334211 Msa1029070:intron 30.0%
!! TTTCAACCTTTGACTTGTTT+AGG + chr7_1:62334201-62334220 None:intergenic 30.0%
TGAAAAGGGCAAAAAGAATT+TGG + chr7_1:62334234-62334253 None:intergenic 30.0%
CAAAACAAATGGATCTGAAA+AGG + chr7_1:62334249-62334268 None:intergenic 30.0%
!!! GATCCATTTGTTTTGTTTCA+AGG - chr7_1:62334254-62334273 Msa1029070:intron 30.0%
GTTCAAAAATAGGTACTCAA+GGG + chr7_1:62334548-62334567 None:intergenic 30.0%
TGTTCAAAAATAGGTACTCA+AGG + chr7_1:62334549-62334568 None:intergenic 30.0%
!!! TTGAGTACCTATTTTTGAAC+AGG - chr7_1:62334548-62334567 Msa1029070:intron 30.0%
AATCCTTCCTGTTCAAAAAT+AGG + chr7_1:62334558-62334577 None:intergenic 30.0%
ATTAATACTAATGCTGCATG+AGG + chr7_1:62334589-62334608 None:intergenic 30.0%
AGAGGTTAAAACAGTAATAC+TGG + chr7_1:62334683-62334702 None:intergenic 30.0%
!!! AGTATTACTGTTTTAACCTC+TGG - chr7_1:62334682-62334701 Msa1029070:intron 30.0%
ATACAAGCAAATTTCATCCA+GGG - chr7_1:62334820-62334839 Msa1029070:intron 30.0%
!! ACAGAAGCTTTTCTAAAAGA+AGG + chr7_1:62334894-62334913 None:intergenic 30.0%
!!! CATTTTTGAGTGTTTATGAC+AGG - chr7_1:62335474-62335493 Msa1029070:intron 30.0%
!!! CTCTTGAAGTTTTTTTTGCT+AGG - chr7_1:62335528-62335547 Msa1029070:intron 30.0%
AGGGATTTAGTGTTAGAATT+TGG - chr7_1:62335548-62335567 Msa1029070:intron 30.0%
GGGATTTAGTGTTAGAATTT+GGG - chr7_1:62335549-62335568 Msa1029070:intron 30.0%
GGATTTAGTGTTAGAATTTG+GGG - chr7_1:62335550-62335569 Msa1029070:intron 30.0%
TAGAATGTGGAGAAATTGTT+AGG - chr7_1:62336003-62336022 Msa1029070:intron 30.0%
ATGATCAGAAGAAACGATTA+AGG + chr7_1:62336059-62336078 None:intergenic 30.0%
! GTTTCTTCTGATCATCTTTT+GGG - chr7_1:62336064-62336083 Msa1029070:intron 30.0%
!! CTATTGCTTTTATCTCTTTC+TGG - chr7_1:62336087-62336106 Msa1029070:intron 30.0%
! TGAAGTGTTTGACCATTAAT+AGG - chr7_1:62336376-62336395 Msa1029070:intron 30.0%
TTCTTCTGTTTGCCTATTAA+TGG + chr7_1:62336391-62336410 None:intergenic 30.0%
CAGAAGAATAGAAAGAAATG+AGG - chr7_1:62336403-62336422 Msa1029070:intron 30.0%
!!! TCTAAGGCTTTTATTTTCTC+TGG - chr7_1:62336537-62336556 Msa1029070:intron 30.0%
ACGTAAAAAACATATCTGGT+AGG - chr7_1:62336632-62336651 Msa1029070:intron 30.0%
ATATGCACAGATCAAAAGAA+CGG - chr7_1:62336699-62336718 Msa1029070:CDS 30.0%
GATCAAATATGAGTGATACA+AGG - chr7_1:62337026-62337045 Msa1029070:intron 30.0%
TAGATCTTGTTCAAGTAGTG+GGG + chr7_1:62331823-62331842 None:intergenic 35.0%
GTTAGATCTTGTTCAAGTAG+TGG + chr7_1:62331825-62331844 None:intergenic 35.0%
ACTGAAACTCGATGAGTTTA+GGG + chr7_1:62331847-62331866 None:intergenic 35.0%
AACTGAAACTCGATGAGTTT+AGG + chr7_1:62331848-62331867 None:intergenic 35.0%
AATACTTGCGGTTAACTTCA+CGG + chr7_1:62331949-62331968 None:intergenic 35.0%
GTTAATTGAAAGAGTTCGTG+AGG + chr7_1:62332013-62332032 None:intergenic 35.0%
CGTGAATAAGAGTAACAGAA+TGG + chr7_1:62332089-62332108 None:intergenic 35.0%
AGTACAGTTAGATCGTGAAA+AGG + chr7_1:62332195-62332214 None:intergenic 35.0%
TATGAGGAAGCTAAATCCAA+AGG - chr7_1:62332285-62332304 Msa1029070:intron 35.0%
ATGAGGAAGCTAAATCCAAA+GGG - chr7_1:62332286-62332305 Msa1029070:intron 35.0%
AGCTTATTGGTGAATGTGAT+AGG - chr7_1:62332349-62332368 Msa1029070:intron 35.0%
GGTGAATGTGATAGGAAAAT+TGG - chr7_1:62332357-62332376 Msa1029070:CDS 35.0%
GGATACTGAAATTGCAATTG+CGG + chr7_1:62332421-62332440 None:intergenic 35.0%
TTGGACAACTCAAGTATTTC+AGG + chr7_1:62332565-62332584 None:intergenic 35.0%
CAGTTGAGACATGAAAGATT+TGG + chr7_1:62332775-62332794 None:intergenic 35.0%
TGAATAAAGGGGATGATACA+TGG - chr7_1:62332845-62332864 Msa1029070:intron 35.0%
GAATAAAGGGGATGATACAT+GGG - chr7_1:62332846-62332865 Msa1029070:intron 35.0%
TGACAGATCTTCATGTACAA+GGG + chr7_1:62333151-62333170 None:intergenic 35.0%
TTGACAGATCTTCATGTACA+AGG + chr7_1:62333152-62333171 None:intergenic 35.0%
GAAAAGAAAGACATACACCT+AGG + chr7_1:62333184-62333203 None:intergenic 35.0%
! CTGACTGATCACTATTTTAC+GGG - chr7_1:62333232-62333251 Msa1029070:intron 35.0%
!!! GACCATTATTTTGAGACGAA+GGG + chr7_1:62333599-62333618 None:intergenic 35.0%
!!! TGACCATTATTTTGAGACGA+AGG + chr7_1:62333600-62333619 None:intergenic 35.0%
!! ATTAGGTTGGTTGAGTTCAA+TGG + chr7_1:62333782-62333801 None:intergenic 35.0%
TGACAATTAAATTGAGACGG+AGG - chr7_1:62333834-62333853 Msa1029070:CDS 35.0%
GACAATTAAATTGAGACGGA+GGG - chr7_1:62333835-62333854 Msa1029070:CDS 35.0%
GCAGTCATCATCTACTAATA+TGG + chr7_1:62333868-62333887 None:intergenic 35.0%
GAAGAAAATGATACAGTCAG+TGG + chr7_1:62334029-62334048 None:intergenic 35.0%
! CAAAGTGTCTCTTTATGAAC+CGG + chr7_1:62334076-62334095 None:intergenic 35.0%
GTGGACTTATTGTCTTGAAT+TGG + chr7_1:62334099-62334118 None:intergenic 35.0%
TTAAAGAACAGACAAGGTTG+TGG + chr7_1:62334162-62334181 None:intergenic 35.0%
! GACTTGTTTAGGAAATGTGA+AGG + chr7_1:62334190-62334209 None:intergenic 35.0%
AAATAAAACTCAGAGGTTGC+AGG - chr7_1:62334384-62334403 Msa1029070:intron 35.0%
!!! GTACCTATTTTTGAACAGGA+AGG - chr7_1:62334552-62334571 Msa1029070:intron 35.0%
GATACAAGCAAATTTCATCC+AGG - chr7_1:62334819-62334838 Msa1029070:intron 35.0%
TAAACAGAGAGTAAAGGACA+AGG + chr7_1:62334847-62334866 None:intergenic 35.0%
AGTTGCTAAACAGAGAGTAA+AGG + chr7_1:62334853-62334872 None:intergenic 35.0%
! GAAGGCAGTTGTTAACATTT+TGG + chr7_1:62334876-62334895 None:intergenic 35.0%
GAGTTCTTTAAGCAAATGTG+TGG - chr7_1:62335325-62335344 Msa1029070:intron 35.0%
!! TGACAAGGAGGTATTACTAA+CGG + chr7_1:62335599-62335618 None:intergenic 35.0%
TAAGTTATCCCTCGTAAAAC+TGG + chr7_1:62335638-62335657 None:intergenic 35.0%
AAAAGACGCACATTCTTTAG+CGG + chr7_1:62335663-62335682 None:intergenic 35.0%
!! GATTAGCTGATCATTTTGGA+GGG - chr7_1:62335818-62335837 Msa1029070:intron 35.0%
TTTGGAGGGAAACTTCATTT+AGG - chr7_1:62335832-62335851 Msa1029070:CDS 35.0%
TCACATTGCTAACAACTAAC+TGG + chr7_1:62336034-62336053 None:intergenic 35.0%
! CGTTTCTTCTGATCATCTTT+TGG - chr7_1:62336063-62336082 Msa1029070:intron 35.0%
! AATAACATCCTATGATGGGA+TGG + chr7_1:62336257-62336276 None:intergenic 35.0%
!!! GCTTTTATTTTCTCTGGTTC+AGG - chr7_1:62336543-62336562 Msa1029070:intron 35.0%
CATCAAGACGATCAATCTTA+CGG + chr7_1:62336585-62336604 None:intergenic 35.0%
! ACATTTGACCCCTTCTTTTT+GGG - chr7_1:62336980-62336999 Msa1029070:CDS 35.0%
TATAGGAGTGACAATCAAGT+AGG + chr7_1:62337069-62337088 None:intergenic 35.0%
CAAGCAAATTATACATCACG+AGG + chr7_1:62337097-62337116 None:intergenic 35.0%
TGTGATAAGATGTGTAGTCT+AGG - chr7_1:62337242-62337261 Msa1029070:intron 35.0%
ATAAGATGTGTAGTCTAGGT+GGG - chr7_1:62337246-62337265 Msa1029070:intron 35.0%
! GCTTAGGTGTTGCAAAATTA+TGG - chr7_1:62337340-62337359 Msa1029070:CDS 35.0%
!! TATGGTTTGATGTTGCTTTG+CGG - chr7_1:62337358-62337377 Msa1029070:CDS 35.0%
TTGTTCCAGATCGAAAAGCA+TGG - chr7_1:62331868-62331887 Msa1029070:three_prime_UTR 40.0%
! CGAAAAGCATGGATGCTATA+CGG - chr7_1:62331879-62331898 Msa1029070:three_prime_UTR 40.0%
AAGCAACTGGACGTTCTTAT+GGG - chr7_1:62331902-62331921 Msa1029070:three_prime_UTR 40.0%
AAAGACCGACGAGATAAAGA+CGG + chr7_1:62331988-62332007 None:intergenic 40.0%
TGAAATTGCAATTGCGGCTT+TGG + chr7_1:62332415-62332434 None:intergenic 40.0%
TTCAGTATCCGAAGTTACTC+AGG - chr7_1:62332431-62332450 Msa1029070:CDS 40.0%
AATCACCACCTGAGTAACTT+CGG + chr7_1:62332442-62332461 None:intergenic 40.0%
TGAGAGAATAATATAGGGGG+TGG - chr7_1:62332698-62332717 Msa1029070:CDS 40.0%
GAGAGAATAATATAGGGGGT+GGG - chr7_1:62332699-62332718 Msa1029070:CDS 40.0%
ATGAATGTGTGTGTTACCGT+GGG - chr7_1:62332811-62332830 Msa1029070:intron 40.0%
TGAAAAGTTGAAGAAGGCTG+AGG - chr7_1:62333437-62333456 Msa1029070:CDS 40.0%
CTCCCTTCGTCTCAAAATAA+TGG - chr7_1:62333594-62333613 Msa1029070:intron 40.0%
TGTCACATTTGGATTGTACG+TGG + chr7_1:62333819-62333838 None:intergenic 40.0%
GAAAATGATACAGTCAGTGG+TGG + chr7_1:62334026-62334045 None:intergenic 40.0%
CATGATCCACTTTACGAATG+TGG + chr7_1:62334121-62334140 None:intergenic 40.0%
!!! ACTGTTTTAACCTCTGGAGT+TGG - chr7_1:62334688-62334707 Msa1029070:intron 40.0%
AATAAGCAAACCAACTCCAG+AGG + chr7_1:62334701-62334720 None:intergenic 40.0%
TTTGTATGAACAGGTGAGCA+AGG - chr7_1:62334936-62334955 Msa1029070:intron 40.0%
TGAGCAAGGATTGATTGATG+AGG - chr7_1:62334950-62334969 Msa1029070:intron 40.0%
!!! AATAGTTTTGATGTGTGCGC+TGG - chr7_1:62335137-62335156 Msa1029070:intron 40.0%
!!! ATAGTTTTGATGTGTGCGCT+GGG - chr7_1:62335138-62335157 Msa1029070:intron 40.0%
! TTTTATCACAGCTTCCTTCC+AGG - chr7_1:62335187-62335206 Msa1029070:intron 40.0%
TACTTCGAAGAATCCAATGG+TGG + chr7_1:62335219-62335238 None:intergenic 40.0%
GTGTACTTCGAAGAATCCAA+TGG + chr7_1:62335222-62335241 None:intergenic 40.0%
! CAAATGTGTGGATTGTGAGT+TGG - chr7_1:62335337-62335356 Msa1029070:intron 40.0%
!! GACAAGGAGGTATTACTAAC+GGG + chr7_1:62335598-62335617 None:intergenic 40.0%
!! CGTCGATTAGCTGATCATTT+TGG - chr7_1:62335814-62335833 Msa1029070:intron 40.0%
!! CGATTAGCTGATCATTTTGG+AGG - chr7_1:62335817-62335836 Msa1029070:intron 40.0%
TATGCAAATCCGTGAGAAGT+TGG - chr7_1:62335858-62335877 Msa1029070:CDS 40.0%
!!! TTGCCACTTTACCCAGTTTT+TGG - chr7_1:62336281-62336300 Msa1029070:intron 40.0%
AATGTCAGTGGCCAAAAACT+GGG + chr7_1:62336295-62336314 None:intergenic 40.0%
!!! AGTTTTTGGCCACTGACATT+GGG - chr7_1:62336295-62336314 Msa1029070:intron 40.0%
AATGTTACTCCCAATGTCAG+TGG + chr7_1:62336307-62336326 None:intergenic 40.0%
GTTGTGTGAACTCCAAATGT+TGG - chr7_1:62336347-62336366 Msa1029070:intron 40.0%
! GAAATGAGGTTGACTTTGCA+TGG - chr7_1:62336417-62336436 Msa1029070:intron 40.0%
TTCTGGGCATGTGTTTAGTT+TGG - chr7_1:62336454-62336473 Msa1029070:intron 40.0%
CCTCTCTCCAATTGAATCAA+AGG + chr7_1:62336512-62336531 None:intergenic 40.0%
CCTTTGATTCAATTGGAGAG+AGG - chr7_1:62336509-62336528 Msa1029070:intron 40.0%
TTGGAGAGAGGAATGATCTA+AGG - chr7_1:62336521-62336540 Msa1029070:intron 40.0%
! AGATTGATCGTCTTGATGAC+AGG - chr7_1:62336587-62336606 Msa1029070:intron 40.0%
ACAGATCAAAAGAACGGAGT+AGG - chr7_1:62336705-62336724 Msa1029070:CDS 40.0%
CAGATCAAAAGAACGGAGTA+GGG - chr7_1:62336706-62336725 Msa1029070:CDS 40.0%
CTAGAGATTATGATCGTCAC+AGG - chr7_1:62336918-62336937 Msa1029070:CDS 40.0%
AAAAGAAGGGGTCAAATGTG+AGG + chr7_1:62336979-62336998 None:intergenic 40.0%
! CACATTTGACCCCTTCTTTT+TGG - chr7_1:62336979-62336998 Msa1029070:CDS 40.0%
! CATTTGACCCCTTCTTTTTG+GGG - chr7_1:62336981-62337000 Msa1029070:CDS 40.0%
AAAAAGGCCCCAAAAAGAAG+GGG + chr7_1:62336991-62337010 None:intergenic 40.0%
GAAAAAGGCCCCAAAAAGAA+GGG + chr7_1:62336992-62337011 None:intergenic 40.0%
AGAAAAAGGCCCCAAAAAGA+AGG + chr7_1:62336993-62337012 None:intergenic 40.0%
TATGAGTGATACAAGGTTCC+AGG - chr7_1:62337033-62337052 Msa1029070:intron 40.0%
TACATCACGAGGAACACTAT+AGG + chr7_1:62337086-62337105 None:intergenic 40.0%
AGCAGCTGCCATAAATCTTA+TGG - chr7_1:62337218-62337237 Msa1029070:intron 40.0%
GATAAGATGTGTAGTCTAGG+TGG - chr7_1:62337245-62337264 Msa1029070:intron 40.0%
GATGGATGTAACTTGAGCTT+AGG - chr7_1:62337324-62337343 Msa1029070:CDS 40.0%
!! ATGGTTTGATGTTGCTTTGC+GGG - chr7_1:62337359-62337378 Msa1029070:CDS 40.0%
! TCTTGTTCAAGTAGTGGGGT+GGG + chr7_1:62331819-62331838 None:intergenic 45.0%
! ATCTTGTTCAAGTAGTGGGG+TGG + chr7_1:62331820-62331839 None:intergenic 45.0%
! AGCATCCATGCTTTTCGATC+TGG + chr7_1:62331876-62331895 None:intergenic 45.0%
GAAGCAACTGGACGTTCTTA+TGG - chr7_1:62331901-62331920 Msa1029070:three_prime_UTR 45.0%
CTTATGGGAGCCAATCGTAA+CGG - chr7_1:62331917-62331936 Msa1029070:three_prime_UTR 45.0%
CATCGCGATCGTAATACTTG+CGG + chr7_1:62331961-62331980 None:intergenic 45.0%
GTTTGCCGTCTTTATCTCGT+CGG - chr7_1:62331980-62331999 Msa1029070:three_prime_UTR 45.0%
AATGAGTGAACCTTAGGGCA+AGG + chr7_1:62332153-62332172 None:intergenic 45.0%
GCTGCAATGAGTGAACCTTA+GGG + chr7_1:62332158-62332177 None:intergenic 45.0%
AGCTGCAATGAGTGAACCTT+AGG + chr7_1:62332159-62332178 None:intergenic 45.0%
CTCGTAACTATCAGTCCCTT+TGG + chr7_1:62332304-62332323 None:intergenic 45.0%
AAGGGACTGATAGTTACGAG+AGG - chr7_1:62332304-62332323 Msa1029070:intron 45.0%
AGGGACTGATAGTTACGAGA+GGG - chr7_1:62332305-62332324 Msa1029070:intron 45.0%
TGATAGTTACGAGAGGGAGT+TGG - chr7_1:62332311-62332330 Msa1029070:intron 45.0%
TAGAGCTCTTAAGCGTCTTG+AGG - chr7_1:62332380-62332399 Msa1029070:CDS 45.0%
AGTATCCGAAGTTACTCAGG+TGG - chr7_1:62332434-62332453 Msa1029070:CDS 45.0%
GATGAATGTGTGTGTTACCG+TGG - chr7_1:62332810-62332829 Msa1029070:intron 45.0%
CATGCACTTGCAGATCTTGA+AGG - chr7_1:62333044-62333063 Msa1029070:intron 45.0%
TGCAGATCTTGAAGGCTTGT+CGG - chr7_1:62333052-62333071 Msa1029070:intron 45.0%
GGATATGAAGATTCGAGCTC+TGG - chr7_1:62333073-62333092 Msa1029070:intron 45.0%
TCTGTCAATGCTGTGATCCT+AGG - chr7_1:62333164-62333183 Msa1029070:intron 45.0%
ATCGGGAGTAACTACAGGAA+GGG + chr7_1:62333394-62333413 None:intergenic 45.0%
ATCTCTTGTGTTCGAGCATC+GGG + chr7_1:62333411-62333430 None:intergenic 45.0%
CATCTCTTGTGTTCGAGCAT+CGG + chr7_1:62333412-62333431 None:intergenic 45.0%
TTGAAGAAGGCTGAGGATCT+TGG - chr7_1:62333444-62333463 Msa1029070:CDS 45.0%
AGTCCACCACATTCGTAAAG+TGG - chr7_1:62334112-62334131 Msa1029070:intron 45.0%
GATCCACTTTACGAATGTGG+TGG + chr7_1:62334118-62334137 None:intergenic 45.0%
ACAAGGTTGTGGCACATTAG+TGG + chr7_1:62334151-62334170 None:intergenic 45.0%
! TGATGAGGCACAGAAAGCAT+TGG - chr7_1:62334965-62334984 Msa1029070:intron 45.0%
! AGAGGCTGAAGCACTTAAGA+AGG - chr7_1:62334989-62335008 Msa1029070:intron 45.0%
GAGAAAATTTGCACGAGTGC+AGG + chr7_1:62335511-62335530 None:intergenic 45.0%
! CTCTTGTGCCAGTTTTACGA+GGG - chr7_1:62335627-62335646 Msa1029070:intron 45.0%
TGGCCAAAAACTGGGTAAAG+TGG + chr7_1:62336287-62336306 None:intergenic 45.0%
CAATGTCAGTGGCCAAAAAC+TGG + chr7_1:62336296-62336315 None:intergenic 45.0%
!!! CAGTTTTTGGCCACTGACAT+TGG - chr7_1:62336294-62336313 Msa1029070:intron 45.0%
! TTGATCGTCTTGATGACAGG+AGG - chr7_1:62336590-62336609 Msa1029070:intron 45.0%
CATATCCACGGTCTCTATCA+TGG + chr7_1:62336826-62336845 None:intergenic 45.0%
ACCGTGGATATGATCGAGAT+CGG - chr7_1:62336834-62336853 Msa1029070:intron 45.0%
GCGACTTCTTGAATCATAGC+GGG + chr7_1:62336873-62336892 None:intergenic 45.0%
GGCGACTTCTTGAATCATAG+CGG + chr7_1:62336874-62336893 None:intergenic 45.0%
GCTATGATTCAAGAAGTCGC+CGG - chr7_1:62336873-62336892 Msa1029070:CDS 45.0%
!! TGTTTTCCCTGTCATCGACT+TGG - chr7_1:62337451-62337470 Msa1029070:five_prime_UTR 45.0%
GGGGTAAGTGTGGGACTATT+TGG + chr7_1:62331799-62331818 None:intergenic 50.0%
! CTTGTTCAAGTAGTGGGGTG+GGG + chr7_1:62331818-62331837 None:intergenic 50.0%
GGATGCTATACGGAAGCAAC+TGG - chr7_1:62331889-62331908 Msa1029070:three_prime_UTR 50.0%
GAGAGAGAGAGAGAGAGGAA+GGG + chr7_1:62332055-62332074 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGA+AGG + chr7_1:62332056-62332075 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr7_1:62332058-62332077 None:intergenic 50.0%
TAGTTACGAGAGGGAGTTGG+AGG - chr7_1:62332314-62332333 Msa1029070:intron 50.0%
!! TCGAGCTCTGGAGATTGTAG+AGG - chr7_1:62333085-62333104 Msa1029070:intron 50.0%
TCGGGAGTAACTACAGGAAG+GGG + chr7_1:62333393-62333412 None:intergenic 50.0%
CATCGGGAGTAACTACAGGA+AGG + chr7_1:62333395-62333414 None:intergenic 50.0%
! GATACAGTCAGTGGTGGTGA+AGG + chr7_1:62334020-62334039 None:intergenic 50.0%
AGAGTAAAGGACAAGGTCCC+TGG + chr7_1:62334840-62334859 None:intergenic 50.0%
!! GGCACAGAAAGCATTGGAAG+AGG - chr7_1:62334971-62334990 Msa1029070:intron 50.0%
AGTACACAGCTGCTGATGTG+CGG - chr7_1:62335235-62335254 Msa1029070:intron 50.0%
CTACGTGTGTGCGACATTTG+TGG - chr7_1:62335449-62335468 Msa1029070:intron 50.0%
AATACCTCCTTGTCACCAGC+AGG - chr7_1:62335604-62335623 Msa1029070:intron 50.0%
! GCTCTTGTGCCAGTTTTACG+AGG - chr7_1:62335626-62335645 Msa1029070:intron 50.0%
GAAGTTCGGCCAACTTCTCA+CGG + chr7_1:62335870-62335889 None:intergenic 50.0%
GAGACGATCCATCCCATCAT+AGG - chr7_1:62336246-62336265 Msa1029070:intron 50.0%
CCCGATCTCGATCATATCCA+CGG + chr7_1:62336838-62336857 None:intergenic 50.0%
CCGTGGATATGATCGAGATC+GGG - chr7_1:62336835-62336854 Msa1029070:intron 50.0%
ATGATTCAAGAAGTCGCCGG+AGG - chr7_1:62336876-62336895 Msa1029070:CDS 50.0%
! GGGGCCTTTTTCTACAAGTG+CGG - chr7_1:62337000-62337019 Msa1029070:intron 50.0%
! GGGCCTTTTTCTACAAGTGC+GGG - chr7_1:62337001-62337020 Msa1029070:intron 50.0%
CCACCCGCACTTGTAGAAAA+AGG + chr7_1:62337007-62337026 None:intergenic 50.0%
! CCTTTTTCTACAAGTGCGGG+TGG - chr7_1:62337004-62337023 Msa1029070:intron 50.0%
CAAGTAGGCACTACTGATCC+TGG + chr7_1:62337054-62337073 None:intergenic 50.0%
CAGCAAGACAGGTTAGTACG+AGG + chr7_1:62337172-62337191 None:intergenic 50.0%
!!! ACCTGTCTTGCTGTTTTGCC+AGG - chr7_1:62337179-62337198 Msa1029070:intron 50.0%
! GTTTTGCCAGGCGTCATGAT+CGG - chr7_1:62337191-62337210 Msa1029070:intron 50.0%
!! GTGGGTGTTGAACCTTGTCT+TGG - chr7_1:62337264-62337283 Msa1029070:CDS 50.0%
TAGTGGGGTGGGGTAAGTGT+GGG + chr7_1:62331808-62331827 None:intergenic 55.0%
GAGAGAGAGAGAGGAAGGGA+GGG + chr7_1:62332051-62332070 None:intergenic 55.0%
AGAGAGAGAGAGAGGAAGGG+AGG + chr7_1:62332052-62332071 None:intergenic 55.0%
GGATATGGGTCCTTGCCCTA+AGG - chr7_1:62332140-62332159 Msa1029070:intron 55.0%
GGGGTGGGTGATACATGACT+TGG - chr7_1:62332714-62332733 Msa1029070:intron 55.0%
! GGTGGATTTGGCAGAGGTTG+AGG + chr7_1:62333360-62333379 None:intergenic 55.0%
!! ACTACAGGAAGGGGTGCTAG+CGG + chr7_1:62333384-62333403 None:intergenic 55.0%
!! CGAGCATCGGGAGTAACTAC+AGG + chr7_1:62333399-62333418 None:intergenic 55.0%
ATCACAGCTTCCTTCCAGGC+AGG - chr7_1:62335191-62335210 Msa1029070:intron 55.0%
ACAAGAGCCTGCTGGTGACA+AGG + chr7_1:62335614-62335633 None:intergenic 55.0%
AAACTGGCACAAGAGCCTGC+TGG + chr7_1:62335622-62335641 None:intergenic 55.0%
! GGTTGACTTTGCATGGCCAC+AGG - chr7_1:62336424-62336443 Msa1029070:intron 55.0%
GACTTTGCATGGCCACAGGA+TGG - chr7_1:62336428-62336447 Msa1029070:intron 55.0%
TGGCCACAGGATGGTCTTTC+TGG - chr7_1:62336437-62336456 Msa1029070:intron 55.0%
GGCCACAGGATGGTCTTTCT+GGG - chr7_1:62336438-62336457 Msa1029070:intron 55.0%
TGCCCAGAAAGACCATCCTG+TGG + chr7_1:62336443-62336462 None:intergenic 55.0%
AACGGAGTAGGGATCGTGAC+AGG - chr7_1:62336717-62336736 Msa1029070:intron 55.0%
ACGGAGTAGGGATCGTGACA+GGG - chr7_1:62336718-62336737 Msa1029070:intron 55.0%
ATCGTGACAGGGAGCCTAGT+AGG - chr7_1:62336729-62336748 Msa1029070:intron 55.0%
TCGTGACAGGGAGCCTAGTA+GGG - chr7_1:62336730-62336749 Msa1029070:intron 55.0%
CATGGCTCTCACCACGTTCA+CGG + chr7_1:62336757-62336776 None:intergenic 55.0%
GTAGGAGCAGAGATCGTGAC+AGG - chr7_1:62336798-62336817 Msa1029070:intron 55.0%
AGGCACCATGATAGAGACCG+TGG - chr7_1:62336818-62336837 Msa1029070:intron 55.0%
GCCTGGCAAAACAGCAAGAC+AGG + chr7_1:62337183-62337202 None:intergenic 55.0%
!! CTAGTACCGATCATGACGCC+TGG + chr7_1:62337200-62337219 None:intergenic 55.0%
GGGCAACCAAGTCGATGACA+GGG + chr7_1:62337460-62337479 None:intergenic 55.0%
AGGGCAACCAAGTCGATGAC+AGG + chr7_1:62337461-62337480 None:intergenic 55.0%
! GTAGTGGGGTGGGGTAAGTG+TGG + chr7_1:62331809-62331828 None:intergenic 60.0%
ACGGACGTCGCCGTTACGAT+TGG + chr7_1:62331930-62331949 None:intergenic 60.0%
!! AGCGGTGGTGGATTTGGCAG+AGG + chr7_1:62333366-62333385 None:intergenic 60.0%
!! GGTGCTAGCGGTGGTGGATT+TGG + chr7_1:62333372-62333391 None:intergenic 60.0%
AATGGTGGCTCCTGCCTGGA+AGG + chr7_1:62335204-62335223 None:intergenic 60.0%
TTCCAGGCAGGAGCCACCAT+TGG - chr7_1:62335203-62335222 Msa1029070:intron 60.0%
ATCCAATGGTGGCTCCTGCC+TGG + chr7_1:62335208-62335227 None:intergenic 60.0%
AGAGCCTGCTGGTGACAAGG+AGG + chr7_1:62335611-62335630 None:intergenic 60.0%
CCACGTTCACGGTCCCTACT+AGG + chr7_1:62336746-62336765 None:intergenic 60.0%
CCTAGTAGGGACCGTGAACG+TGG - chr7_1:62336743-62336762 Msa1029070:intron 60.0%
GTGGTGAGAGCCATGAGCGA+GGG - chr7_1:62336762-62336781 Msa1029070:intron 60.0%
GCTCTCGAGATCGTGACCTC+CGG + chr7_1:62336895-62336914 None:intergenic 60.0%
!! ACAGGAAGGGGTGCTAGCGG+TGG + chr7_1:62333381-62333400 None:intergenic 65.0%
CGTGGTGAGAGCCATGAGCG+AGG - chr7_1:62336761-62336780 Msa1029070:intron 65.0%
!! GGAAGGGGTGCTAGCGGTGG+TGG + chr7_1:62333378-62333397 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62331789 62337504 62331789 ID=Msa1029070;Name=Msa1029070
chr7_1 mRNA 62331789 62337504 62331789 ID=Msa1029070-mRNA-1;Parent=Msa1029070;Name=Msa1029070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|0.91|0.92|1|0.91|0.84|13|285|410
chr7_1 exon 62331789 62332092 62331789 ID=Msa1029070-mRNA-1:exon:13341;Parent=Msa1029070-mRNA-1
chr7_1 exon 62332354 62332584 62332354 ID=Msa1029070-mRNA-1:exon:13340;Parent=Msa1029070-mRNA-1
chr7_1 exon 62332682 62332728 62332682 ID=Msa1029070-mRNA-1:exon:13339;Parent=Msa1029070-mRNA-1
chr7_1 exon 62333402 62333483 62333402 ID=Msa1029070-mRNA-1:exon:13338;Parent=Msa1029070-mRNA-1
chr7_1 exon 62333798 62333856 62333798 ID=Msa1029070-mRNA-1:exon:13337;Parent=Msa1029070-mRNA-1
chr7_1 exon 62334033 62334095 62334033 ID=Msa1029070-mRNA-1:exon:13336;Parent=Msa1029070-mRNA-1
chr7_1 exon 62334283 62334344 62334283 ID=Msa1029070-mRNA-1:exon:13335;Parent=Msa1029070-mRNA-1
chr7_1 exon 62335828 62335981 62335828 ID=Msa1029070-mRNA-1:exon:13334;Parent=Msa1029070-mRNA-1
chr7_1 exon 62336157 62336236 62336157 ID=Msa1029070-mRNA-1:exon:13333;Parent=Msa1029070-mRNA-1
chr7_1 exon 62336671 62336734 62336671 ID=Msa1029070-mRNA-1:exon:13332;Parent=Msa1029070-mRNA-1
chr7_1 exon 62336838 62337009 62336838 ID=Msa1029070-mRNA-1:exon:13331;Parent=Msa1029070-mRNA-1
chr7_1 exon 62337106 62337158 62337106 ID=Msa1029070-mRNA-1:exon:13330;Parent=Msa1029070-mRNA-1
chr7_1 exon 62337260 62337504 62337260 ID=Msa1029070-mRNA-1:exon:13329;Parent=Msa1029070-mRNA-1
chr7_1 five_prime_UTR 62337407 62337504 62337407 ID=Msa1029070-mRNA-1:five_prime_utr;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62337260 62337406 62337260 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62337106 62337158 62337106 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62336838 62337009 62336838 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62336671 62336734 62336671 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62336157 62336236 62336157 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62335828 62335981 62335828 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62334283 62334344 62334283 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62334033 62334095 62334033 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62333798 62333856 62333798 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62333402 62333483 62333402 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62332682 62332728 62332682 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62332354 62332584 62332354 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 CDS 62332074 62332092 62332074 ID=Msa1029070-mRNA-1:cds;Parent=Msa1029070-mRNA-1
chr7_1 three_prime_UTR 62331789 62332073 62331789 ID=Msa1029070-mRNA-1:three_prime_utr;Parent=Msa1029070-mRNA-1
Gene Sequence

>Msa1029070

ATGGATGCTATACGGAAGCAACTGGACGTTCTTATGGGAGCCAATCGTAACGGCGACGTCCGTGAAGTTAACCGCAAGTATTACGATCGCGATGTTTGCCGTCTTTATCTCGTCGGTCTTTGCCCTCACGAACTCTTTCAATTAACGAAAATGGATATGGGTCCTTGCCCTAAGGTTCACTCATTGCAGCTCAGAAAAGAATATGAGGAAGCTAAATCCAAAGGGACTGATAGTTACGAGAGGGAGTTGGAGGATGTTATAGATAAGCTTATTGGTGAATGTGATAGGAAAATTGGTAGAGCTCTTAAGCGTCTTGAGGATGATGATGCCAAAGCCGCAATTGCAATTTCAGTATCCGAAGTTACTCAGGTGACACCTGAAATACTTGAGTTGTCCAAAGAAATCAAAGAAAAGTTGAAAGAAGCTGATAAATTTGATCTTGAAGGCTTGTCGGATATGAAGATTCGAGCTCTGGAGATTGTAGAGGAGCTTCGAATTAAAAGAGCAGACAAACAGTCTACGCTTCTTTTAGATGCATTCAACAAAGATAGGGCATCTTTACCTCAACCTCTGCCAAATCCACCACCGCTAGCACCCCTTCCTGTAGTTACTCCCGATGCTCGAACACAAGAGATGATAAATGAAAAGTTGAAGAAGGCTGAGGATCTTGGTGAGCAAGGATTGATTGATGAGGCACAGAAAGCATTGGAAGAGGCTGAAGCACTTAAGAAGCTTCCTTCCAGGCAGGAGCCACCATTGGATTCTTCGAAGTACACAGCTGCTGATGTGCGGATTACTGATCAGAAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGTGATCGTCGATTAGCTGATCATTTTGGAGGGAAACTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTGGCCGAACTTCAAGAAGAAAGAAACAAGAGCCGTAAGATTGATCGTCTTGATGACAGGAGATCAAAAGAACGGAGTAGGGATCGTGACAGGGAGCCTAGTAGGGACCGTGAACGTGGTGAGAGCCATGAGCGAGGGCGAGACAATGATCGTAGGAGCAGAGATCGTGACAGGCACCATGATAGAGACCGTGGATATGATCGAGATCGGGACAGAGACTCATCCCGCTATGATTCAAGAAGTCGCCGGAGGTCACGATCTCGAGAGCGTTCTAGAGATTATGATCGTCACAGGCGTCATGATCGGTACTAG

Protein sequence

>Msa1029070

MDAIRKQLDVLMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHELFQLTKMDMGPCPKVHSLQLRKEYEEAKSKGTDSYERELEDVIDKLIGECDRKIGRALKRLEDDDAKAAIAISVSEVTQVTPEILELSKEIKEKLKEADKFDLEGLSDMKIRALEIVEELRIKRADKQSTLLLDAFNKDRASLPQPLPNPPPLAPLPVVTPDARTQEMINEKLKKAEDLGEQGLIDEAQKALEEAEALKKLPSRQEPPLDSSKYTAADVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLAELQEERNKSRKIDRLDDRRSKERSRDRDREPSRDRERGESHERGRDNDRRSRDRDRHHDRDRGYDRDRDRDSSRYDSRSRRRSRSRERSRDYDRHRRHDRY*