Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643000 | XP_013456007.1 | 97.463 | 473 | 12 | 0 | 1 | 473 | 1 | 473 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643000 | sp|Q9SKN2|DRB2_ARATH | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.74e-164 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643000 | A0A072ULT8 | 97.463 | 473 | 12 | 0 | 1 | 473 | 1 | 473 | 0.0 | 937 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044240 | Msa0643000 | 0.805268 | 1.449126e-49 | -8.615850e-47 |
| Msa0047470 | Msa0643000 | -0.815954 | 7.093128e-52 | -8.615850e-47 |
| Msa0056140 | Msa0643000 | 0.836873 | 7.251073e-57 | -8.615850e-47 |
| Msa0056170 | Msa0643000 | 0.806167 | 9.381448e-50 | -8.615850e-47 |
| Msa0643000 | Msa0651400 | -0.849939 | 2.343492e-60 | -8.615850e-47 |
| Msa0643000 | Msa0655660 | 0.811254 | 7.675294e-51 | -8.615850e-47 |
| Msa0643000 | Msa0743260 | -0.814771 | 1.299921e-51 | -8.615850e-47 |
| Msa0643000 | Msa0775260 | -0.806948 | 6.419332e-50 | -8.615850e-47 |
| Msa0643000 | Msa0787720 | -0.814690 | 1.354822e-51 | -8.615850e-47 |
| Msa0643000 | Msa0853170 | -0.805395 | 1.362868e-49 | -8.615850e-47 |
| Msa0643000 | Msa0899240 | 0.820336 | 7.238841e-53 | -8.615850e-47 |
| Msa0643000 | Msa0934830 | -0.810432 | 1.156338e-50 | -8.615850e-47 |
| Msa0643000 | Msa0971860 | -0.822430 | 2.378420e-53 | -8.615850e-47 |
| Msa0643000 | Msa1015060 | -0.819458 | 1.149201e-52 | -8.615850e-47 |
| Msa0643000 | Msa1076570 | 0.808199 | 3.483391e-50 | -8.615850e-47 |
| Msa0643000 | Msa1097380 | -0.805499 | 1.296229e-49 | -8.615850e-47 |
| Msa0643000 | Msa1157730 | -0.803233 | 3.844349e-49 | -8.615850e-47 |
| Msa0643000 | Msa1236640 | 0.811818 | 5.787316e-51 | -8.615850e-47 |
| Msa0643000 | Msa1252070 | -0.802476 | 5.509249e-49 | -8.615850e-47 |
| Msa0643000 | Msa1280130 | -0.801054 | 1.079113e-48 | -8.615850e-47 |
| Msa0643000 | Msa1289010 | -0.801806 | 7.569131e-49 | -8.615850e-47 |
| Msa0643000 | Msa1292730 | -0.806969 | 6.352740e-50 | -8.615850e-47 |
| Msa0643000 | Msa1316560 | 0.838800 | 2.319284e-57 | -8.615850e-47 |
| Msa0643000 | Msa1388790 | 0.829914 | 3.942319e-55 | -8.615850e-47 |
| Msa0643000 | Msa1397970 | -0.811740 | 6.019752e-51 | -8.615850e-47 |
| Msa0643000 | Msa1403930 | 0.802374 | 5.784194e-49 | -8.615850e-47 |
| Msa0643000 | Msa1440180 | -0.809272 | 2.054240e-50 | -8.615850e-47 |
| Msa0643000 | Msa1449740 | -0.809988 | 1.441020e-50 | -8.615850e-47 |
| Msa0197940 | Msa0643000 | 0.831015 | 2.121371e-55 | -8.615850e-47 |
| Msa0199730 | Msa0643000 | -0.805684 | 1.185257e-49 | -8.615850e-47 |
| Msa0380040 | Msa0643000 | -0.804455 | 2.142140e-49 | -8.615850e-47 |
| Msa0416890 | Msa0643000 | 0.845261 | 4.535890e-59 | -8.615850e-47 |
| Msa0431520 | Msa0643000 | -0.801321 | 9.515658e-49 | -8.615850e-47 |
| Msa0440130 | Msa0643000 | 0.848815 | 4.819421e-60 | -8.615850e-47 |
| Msa0288240 | Msa0643000 | -0.820317 | 7.311397e-53 | -8.615850e-47 |
| Msa0326670 | Msa0643000 | -0.816779 | 4.637247e-52 | -8.615850e-47 |
| Msa0553220 | Msa0643000 | 0.815258 | 1.013798e-51 | -8.615850e-47 |
| Msa0562300 | Msa0643000 | 0.815804 | 7.660766e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643000 | MtrunA17_Chr4g0029001 | 97.463 | 473 | 12 | 0 | 1 | 473 | 1 | 473 | 0.0 | 937 |
| Msa0643000 | MtrunA17_Chr2g0326721 | 75.443 | 395 | 71 | 8 | 1 | 377 | 1 | 387 | 0.0 | 560 |
| Msa0643000 | MtrunA17_Chr7g0273611 | 72.611 | 157 | 43 | 0 | 1 | 157 | 1 | 157 | 7.36e-78 | 251 |
| Msa0643000 | MtrunA17_Chr6g0461131 | 45.783 | 166 | 78 | 3 | 1 | 163 | 158 | 314 | 2.14e-34 | 135 |
| Msa0643000 | MtrunA17_Chr6g0456181 | 50.000 | 122 | 54 | 1 | 32 | 153 | 2 | 116 | 1.78e-25 | 100 |
| Msa0643000 | MtrunA17_Chr3g0132821 | 37.500 | 152 | 93 | 1 | 1 | 150 | 16 | 167 | 1.02e-21 | 98.6 |
| Msa0643000 | MtrunA17_Chr3g0118941 | 36.364 | 154 | 85 | 2 | 7 | 160 | 113 | 253 | 5.38e-20 | 91.7 |
| Msa0643000 | MtrunA17_Chr3g0118921 | 35.897 | 156 | 91 | 3 | 3 | 158 | 50 | 196 | 1.37e-18 | 86.7 |
| Msa0643000 | MtrunA17_Chr4g0002041 | 32.468 | 154 | 98 | 5 | 2 | 153 | 28 | 177 | 1.19e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643000 | AT2G28380.1 | 69.722 | 360 | 87 | 7 | 1 | 343 | 1 | 355 | 2.79e-165 | 473 |
| Msa0643000 | AT5G41070.1 | 70.899 | 189 | 48 | 1 | 1 | 189 | 1 | 182 | 8.61e-89 | 276 |
| Msa0643000 | AT3G26932.1 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.92e-87 | 272 |
| Msa0643000 | AT3G26932.2 | 69.312 | 189 | 52 | 1 | 1 | 189 | 1 | 183 | 1.92e-87 | 272 |
| Msa0643000 | AT3G62800.3 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.62e-35 | 134 |
| Msa0643000 | AT3G62800.2 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.99e-35 | 134 |
| Msa0643000 | AT3G62800.1 | 45.349 | 172 | 86 | 1 | 1 | 172 | 4 | 167 | 2.99e-35 | 134 |
| Msa0643000 | AT3G26932.3 | 56.075 | 107 | 41 | 1 | 83 | 189 | 25 | 125 | 3.41e-30 | 119 |
| Msa0643000 | AT1G09700.2 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 1.06e-21 | 95.1 |
| Msa0643000 | AT1G09700.1 | 36.774 | 155 | 97 | 1 | 1 | 154 | 15 | 169 | 3.86e-21 | 95.9 |
Find 146 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTTGTTTCTTATTCT+TGG | 0.064318 | 4_3:+45359194 | None:intergenic |
| GCTCCTGCAGCAGGGAATTT+AGG | 0.172441 | 4_3:+45357583 | None:intergenic |
| CGACGGGTCCATCGGCTTTC+TGG | 0.173751 | 4_3:+45357607 | None:intergenic |
| CCAACTTTGCTGACGGTTAC+AGG | 0.253134 | 4_3:+45357208 | None:intergenic |
| GGGGACACTGCGGCTGGTGG+CGG | 0.272028 | 4_3:+45357469 | None:intergenic |
| TGCTGGAATATTCTCAGTTT+TGG | 0.276286 | 4_3:+45357027 | None:intergenic |
| CTGCTGGCTGACGCCGTTGC+GGG | 0.279138 | 4_3:+45357667 | None:intergenic |
| GGTACAGATCCGATCCGTTT+TGG | 0.280569 | 4_3:+45360869 | None:intergenic |
| GGTCGGGTTGGAATGTTTAA+AGG | 0.290618 | 4_3:+45360898 | None:intergenic |
| TGCTTCGAGGTGATGTCTTT+TGG | 0.292647 | 4_3:+45357695 | None:intergenic |
| GGGACACTGCGGCTGGTGGC+GGG | 0.293035 | 4_3:+45357470 | None:intergenic |
| ATTGCATTCCTTATGGTAAC+TGG | 0.309636 | 4_3:+45357505 | None:intergenic |
| TGCCGCAGTACACAACTTTC+CGG | 0.311185 | 4_3:-45359290 | Msa0643000:CDS |
| CTCCTGCAGCAGGGAATTTA+GGG | 0.324666 | 4_3:+45357584 | None:intergenic |
| GGTTGAGGGCTGGTTGGCCT+TGG | 0.328316 | 4_3:+45357754 | None:intergenic |
| GGAAATGAAATCATAGCATT+TGG | 0.335358 | 4_3:+45357799 | None:intergenic |
| AAAGCTACCGTTAACTTTAA+CGG | 0.356873 | 4_3:-45360679 | Msa0643000:CDS |
| TACAGGTATTGCATTCCTTA+TGG | 0.359904 | 4_3:+45357498 | None:intergenic |
| ACAGGTTCATCTATTATAAC+TGG | 0.360033 | 4_3:+45357226 | None:intergenic |
| GGAAGAATCTTTGATGTTGC+TGG | 0.369008 | 4_3:+45357727 | None:intergenic |
| TCTGCACCACTAGTTGGTGC+TGG | 0.373760 | 4_3:+45357061 | None:intergenic |
| GGACACTGCGGCTGGTGGCG+GGG | 0.375345 | 4_3:+45357471 | None:intergenic |
| ATGAATGAAGCTGGCAGAAC+AGG | 0.397708 | 4_3:+45356789 | None:intergenic |
| TTTGTGCCAGCTCTTGTAGC+TGG | 0.402118 | 4_3:+45360767 | None:intergenic |
| GATCTCGCCGTTAAAGTTAA+CGG | 0.411163 | 4_3:+45360672 | None:intergenic |
| TTGAACCGCGGCGCGTGATC+AGG | 0.411390 | 4_3:+45360700 | None:intergenic |
| TGCACTGTTTCAGATTCTGC+TGG | 0.412381 | 4_3:+45357010 | None:intergenic |
| ATAGGAACAGGTTCGTCTAC+TGG | 0.413046 | 4_3:+45357151 | None:intergenic |
| ACAGGTTCGTCTACTGGAAT+TGG | 0.418444 | 4_3:+45357157 | None:intergenic |
| TGCAAGCTCTTCAACTGAAC+CGG | 0.422266 | 4_3:-45357905 | Msa0643000:CDS |
| TCATCTTTGCTGATAGGAAC+AGG | 0.424802 | 4_3:+45357139 | None:intergenic |
| CCTGTAACCGTCAGCAAAGT+TGG | 0.425749 | 4_3:-45357208 | Msa0643000:CDS |
| GGTGGTGCAGCAGCATATAC+TGG | 0.428606 | 4_3:+45357385 | None:intergenic |
| CGCCCTAAATTCCCTGCTGC+AGG | 0.431001 | 4_3:-45357586 | Msa0643000:CDS |
| ACAACTTTCCGGTCAGGCTT+AGG | 0.437320 | 4_3:-45359279 | Msa0643000:CDS |
| CTTCAGACGGTAATTCAGTA+AGG | 0.439084 | 4_3:+45357843 | None:intergenic |
| ATGAGTAATGTAATAGTTGA+AGG | 0.440004 | 4_3:-45356926 | Msa0643000:three_prime_UTR |
| AAGAAATTGCACAAAGGGTA+GGG | 0.440702 | 4_3:-45359320 | Msa0643000:CDS |
| GCTGGATCATCTTTGCTGAT+AGG | 0.442655 | 4_3:+45357133 | None:intergenic |
| GCTGGTGGCGGGGAGAATAC+AGG | 0.442744 | 4_3:+45357481 | None:intergenic |
| TAAGGTGCTGCTCCTGCAGC+AGG | 0.445437 | 4_3:+45357574 | None:intergenic |
| AATTAGCTTCAGAGGAATCA+TGG | 0.446861 | 4_3:+45360947 | None:intergenic |
| GATGTTGCTGGTCGAGGTTG+AGG | 0.454441 | 4_3:+45357739 | None:intergenic |
| CTGCTTGCCGAATATTGATC+GGG | 0.455818 | 4_3:+45357410 | None:intergenic |
| GGAAACTTTGGTTGCTATGT+AGG | 0.464305 | 4_3:+45360922 | None:intergenic |
| TCCAGTTCGTCATTGTTCTC+CGG | 0.465341 | 4_3:+45357886 | None:intergenic |
| ATCTTTGATGTTGCTGGTCG+AGG | 0.467209 | 4_3:+45357733 | None:intergenic |
| ACCGGTACGGTGGAATTAGC+TGG | 0.468526 | 4_3:-45359240 | Msa0643000:CDS |
| AAAGAGAAAGTGAAGAAGAA+AGG | 0.471347 | 4_3:+45361009 | None:intergenic |
| TCCACCGTACCGGTGAAAAC+AGG | 0.472510 | 4_3:+45359249 | None:intergenic |
| CTTACAAGAAATTGCACAAA+GGG | 0.473469 | 4_3:-45359325 | Msa0643000:CDS |
| ACCGGAGAACAATGACGAAC+TGG | 0.476137 | 4_3:-45357887 | Msa0643000:CDS |
| GCGGCATAAACTACAGGTGC+TGG | 0.476517 | 4_3:+45357253 | None:intergenic |
| TTAGCTGGAATTACATTCAC+TGG | 0.483760 | 4_3:-45359225 | Msa0643000:CDS |
| ATGTTTAAAGGTGGAAACTT+TGG | 0.487790 | 4_3:+45360910 | None:intergenic |
| GATATTACTATTATGTATGT+TGG | 0.490036 | 4_3:-45356832 | Msa0643000:three_prime_UTR |
| TCGACTTTACTGATGGGAAC+CGG | 0.490472 | 4_3:+45357277 | None:intergenic |
| AGAAGAAAACGGTGACATAA+TGG | 0.491096 | 4_3:+45357633 | None:intergenic |
| TAACTGGAGGTGCAACTCCC+TGG | 0.492953 | 4_3:+45357521 | None:intergenic |
| AAGAAAGGAAGAAGATGAAG+AGG | 0.493881 | 4_3:+45361024 | None:intergenic |
| ATGTTGCTGGTCGAGGTTGA+GGG | 0.497603 | 4_3:+45357740 | None:intergenic |
| GGAGCAACTCGTACTGGAAG+TGG | 0.497633 | 4_3:+45357433 | None:intergenic |
| AGCAGGGAATTTAGGGCGAC+GGG | 0.498423 | 4_3:+45357591 | None:intergenic |
| CAGTACACAACTTTCCGGTC+AGG | 0.503151 | 4_3:-45359285 | Msa0643000:CDS |
| GAAGTGGCCGCATTACTTGT+GGG | 0.503190 | 4_3:+45357449 | None:intergenic |
| ACATATGCGATCATCTTGCC+AGG | 0.504019 | 4_3:-45357539 | Msa0643000:CDS |
| ATATGTCGAATGGGAACATA+AGG | 0.504593 | 4_3:+45357556 | None:intergenic |
| CTGCACCACTAGTTGGTGCT+GGG | 0.510943 | 4_3:+45357062 | None:intergenic |
| ACTTGTGGGGACACTGCGGC+TGG | 0.514632 | 4_3:+45357463 | None:intergenic |
| ACCGCTTCGAGTAGATGAAC+CGG | 0.515159 | 4_3:-45357296 | Msa0643000:CDS |
| AGTATATGCTGCTGCACCAC+CGG | 0.516677 | 4_3:-45357383 | Msa0643000:CDS |
| ATTTAGGGCGACGGGTCCAT+CGG | 0.519139 | 4_3:+45357599 | None:intergenic |
| AAAAGACATCACCTCGAAGC+AGG | 0.519683 | 4_3:-45357693 | Msa0643000:CDS |
| ACTGCTGGCTGACGCCGTTG+CGG | 0.526695 | 4_3:+45357666 | None:intergenic |
| GATGATCGCATATGTCGAAT+GGG | 0.528345 | 4_3:+45357547 | None:intergenic |
| CAAGAAATTGCACAAAGGGT+AGG | 0.529625 | 4_3:-45359321 | Msa0643000:CDS |
| GTAGATGTCCTAAGCCTGAC+CGG | 0.533299 | 4_3:+45359271 | None:intergenic |
| TACAAAATTTCAGGATGAGA+CGG | 0.533377 | 4_3:-45359364 | Msa0643000:intron |
| TCTCTTATGCACGTGTATGA+AGG | 0.533582 | 4_3:+45360727 | None:intergenic |
| TGCTGGATCGACTTTACTGA+TGG | 0.534715 | 4_3:+45357270 | None:intergenic |
| GTTGCGGGATGCCTGCTTCG+AGG | 0.535418 | 4_3:+45357682 | None:intergenic |
| GGTCGAGGTTGAGGGCTGGT+TGG | 0.535590 | 4_3:+45357748 | None:intergenic |
| ATTCAGTAAGGCTCGTGCTA+TGG | 0.536198 | 4_3:+45357855 | None:intergenic |
| ACAAAATTTCAGGATGAGAC+GGG | 0.538097 | 4_3:-45359363 | Msa0643000:intron |
| AAAGTTGTGTACTGCGGCAA+CGG | 0.538171 | 4_3:+45359294 | None:intergenic |
| CAGCAGGGAATTTAGGGCGA+CGG | 0.540209 | 4_3:+45357590 | None:intergenic |
| CTTTCTGGTGTAGAAGAAAA+CGG | 0.540395 | 4_3:+45357622 | None:intergenic |
| CTTCTACACCAGAAAGCCGA+TGG | 0.542335 | 4_3:-45357615 | Msa0643000:CDS |
| ATCTGAAACAGTGCAGAGGT+TGG | 0.542599 | 4_3:-45357002 | Msa0643000:CDS |
| GGAAGTGGCCGCATTACTTG+TGG | 0.543405 | 4_3:+45357448 | None:intergenic |
| TTACCGTCTGAAGGAAAAGA+TGG | 0.543974 | 4_3:-45357833 | Msa0643000:CDS |
| ATCTGTACCAGGTACAGCAC+TGG | 0.545644 | 4_3:-45360855 | Msa0643000:five_prime_UTR |
| GTTCGTCTACTGGAATTGGT+AGG | 0.546352 | 4_3:+45357161 | None:intergenic |
| TGTGGGGACACTGCGGCTGG+TGG | 0.547384 | 4_3:+45357466 | None:intergenic |
| TTGCACCTCCAGTTACCATA+AGG | 0.547854 | 4_3:-45357513 | Msa0643000:CDS |
| AGTTTCAGTTTCAAAATCCA+AGG | 0.548542 | 4_3:-45357771 | Msa0643000:CDS |
| ACCCGACCCGAATCCCAAAA+CGG | 0.550435 | 4_3:-45360883 | Msa0643000:five_prime_UTR |
| TGCTGGTCGAGGTTGAGGGC+TGG | 0.550571 | 4_3:+45357744 | None:intergenic |
| AGATGATCGCATATGTCGAA+TGG | 0.550906 | 4_3:+45357546 | None:intergenic |
| TCCAGCTAATTCCACCGTAC+CGG | 0.551659 | 4_3:+45359239 | None:intergenic |
| CAAGAACCAGCTACAAGAGC+TGG | 0.553878 | 4_3:-45360773 | Msa0643000:CDS |
| CAGCAAAGTTGGTCCATCAC+CGG | 0.556442 | 4_3:-45357197 | Msa0643000:CDS |
| ACTGCTTGCCGAATATTGAT+CGG | 0.564033 | 4_3:+45357409 | None:intergenic |
| AATGGAACTGTGATCACTGC+TGG | 0.566081 | 4_3:+45357651 | None:intergenic |
| GAATGTTCCAGTGCTGTACC+TGG | 0.568629 | 4_3:+45360848 | None:intergenic |
| AAACGGATCGGATCTGTACC+AGG | 0.569427 | 4_3:-45360866 | Msa0643000:five_prime_UTR |
| TTCGTCTACTGGAATTGGTA+GGG | 0.571574 | 4_3:+45357162 | None:intergenic |
| CTGTTCAACACTTCGTCAAG+CGG | 0.576763 | 4_3:-45360632 | Msa0643000:CDS |
| AAAATGCAGCTATGGCAGCT+TGG | 0.578374 | 4_3:-45359170 | Msa0643000:CDS |
| AGAAATTGCACAAAGGGTAG+GGG | 0.578498 | 4_3:-45359319 | Msa0643000:CDS |
| ATTAGCTTCAGAGGAATCAT+GGG | 0.582292 | 4_3:+45360948 | None:intergenic |
| TGTAGGTGAATTAGCTTCAG+AGG | 0.584702 | 4_3:+45360939 | None:intergenic |
| CGGGTTGGAATGTTTAAAGG+TGG | 0.584826 | 4_3:+45360901 | None:intergenic |
| ATCTATTATAACTGGTGGAG+CGG | 0.586978 | 4_3:+45357234 | None:intergenic |
| GGTGGAGCGGCATAAACTAC+AGG | 0.588054 | 4_3:+45357247 | None:intergenic |
| CTTACTGAATTACCGTCTGA+AGG | 0.590169 | 4_3:-45357842 | Msa0643000:CDS |
| CTTTCTAGAGAGAGAAAGTG+AGG | 0.591808 | 4_3:-45360813 | Msa0643000:five_prime_UTR |
| GGAACATTCAGCTGCTGAGG+TGG | 0.592650 | 4_3:-45360611 | Msa0643000:CDS |
| AGCGGAACATTCAGCTGCTG+AGG | 0.595272 | 4_3:-45360614 | Msa0643000:CDS |
| TTTGCAGCAAGAGAATGAGA+AGG | 0.595844 | 4_3:+45360562 | None:intergenic |
| TTATGCACGTGTATGAAGGT+AGG | 0.596363 | 4_3:+45360731 | None:intergenic |
| GGTTCATCTATTATAACTGG+TGG | 0.599494 | 4_3:+45357229 | None:intergenic |
| ACCCGAATCCCAAAACGGAT+CGG | 0.600225 | 4_3:-45360878 | Msa0643000:five_prime_UTR |
| TGATGGACCAACTTTGCTGA+CGG | 0.600317 | 4_3:+45357201 | None:intergenic |
| TCGAAGCAGGCATCCCGCAA+CGG | 0.609303 | 4_3:-45357680 | Msa0643000:CDS |
| TTGAAGGTTAGCATGAGCAA+TGG | 0.611246 | 4_3:-45356910 | Msa0643000:three_prime_UTR |
| GCATTCCTTATGGTAACTGG+AGG | 0.628682 | 4_3:+45357508 | None:intergenic |
| CTTAGTTCTTTGTCTCATCG+TGG | 0.631933 | 4_3:-45360586 | Msa0643000:CDS |
| GATGACCCAGCACCAACTAG+TGG | 0.634509 | 4_3:-45357067 | Msa0643000:CDS |
| TCATACACGTGCATAAGAGA+AGG | 0.640719 | 4_3:-45360724 | Msa0643000:CDS |
| ACCGGTTCATCTACTCGAAG+CGG | 0.647230 | 4_3:+45357295 | None:intergenic |
| CAGTGTCCCCACAAGTAATG+CGG | 0.651092 | 4_3:-45357456 | Msa0643000:CDS |
| TGCTTGCCGAATATTGATCG+GGG | 0.653144 | 4_3:+45357411 | None:intergenic |
| GCTGGATCGACTTTACTGAT+GGG | 0.656207 | 4_3:+45357271 | None:intergenic |
| TCTAGAGAGAGAAAGTGAGG+AGG | 0.662787 | 4_3:-45360810 | Msa0643000:five_prime_UTR |
| CATATGCGATCATCTTGCCA+GGG | 0.665667 | 4_3:-45357538 | Msa0643000:CDS |
| AAGTGGCCGCATTACTTGTG+GGG | 0.666743 | 4_3:+45357450 | None:intergenic |
| AAGGTGCTGCTCCTGCAGCA+GGG | 0.668834 | 4_3:+45357575 | None:intergenic |
| TCTTACAAGAAATTGCACAA+AGG | 0.676644 | 4_3:-45359326 | Msa0643000:CDS |
| CAGAATCTGAAACAGTGCAG+AGG | 0.683225 | 4_3:-45357006 | Msa0643000:CDS |
| AAGGTCCTGATCACGCGCCG+CGG | 0.692375 | 4_3:-45360705 | Msa0643000:CDS |
| TTAACGGTAGCTTTGAACCG+CGG | 0.701686 | 4_3:+45360688 | None:intergenic |
| GCTTGCCGAATATTGATCGG+GGG | 0.701687 | 4_3:+45357412 | None:intergenic |
| GACCGGAAAGTTGTGTACTG+CGG | 0.716151 | 4_3:+45359288 | None:intergenic |
| CGAAGTGTTGAACAGTACTG+TGG | 0.724508 | 4_3:+45360640 | None:intergenic |
| CATTACTTGTGGGGACACTG+CGG | 0.741078 | 4_3:+45357459 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATGTATTTTTTGTTTTAT+TGG | - | chr4_3:45357714-45357733 | Msa0643000:CDS | 15.0% |
| !!! | TTAGTGTTTTTATTTTGATA+TGG | - | chr4_3:45357779-45357798 | Msa0643000:CDS | 15.0% |
| !!! | TAGTGTTTTTATTTTGATAT+GGG | - | chr4_3:45357780-45357799 | Msa0643000:CDS | 15.0% |
| !! | TTGAAATATAAAATAGATTC+TGG | - | chr4_3:45358151-45358170 | Msa0643000:intron | 15.0% |
| !! | TTGAAAATAAAAAAGGACAA+GGG | + | chr4_3:45357462-45357481 | None:intergenic | 20.0% |
| !! | TAGACTCTTGAAAATAAAAA+AGG | + | chr4_3:45357469-45357488 | None:intergenic | 20.0% |
| !!! | AGTGTTTTTATTTTGATATG+GGG | - | chr4_3:45357781-45357800 | Msa0643000:CDS | 20.0% |
| !!! | ACTAAGATTTGTTTCTTAAA+AGG | - | chr4_3:45357986-45358005 | Msa0643000:intron | 20.0% |
| !!! | CTAAGATTTGTTTCTTAAAA+GGG | - | chr4_3:45357987-45358006 | Msa0643000:intron | 20.0% |
| !!! | TAAGATTTGTTTCTTAAAAG+GGG | - | chr4_3:45357988-45358007 | Msa0643000:intron | 20.0% |
| !! | AATTATATACAACAAATCAG+TGG | + | chr4_3:45358024-45358043 | None:intergenic | 20.0% |
| !!! | TAAAGCATAGTTCTAAATTT+CGG | + | chr4_3:45358395-45358414 | None:intergenic | 20.0% |
| !!! | GCAATATTTCATTTTATGAT+CGG | + | chr4_3:45358868-45358887 | None:intergenic | 20.0% |
| !! | AGAATTTAAACAAATCACTA+TGG | + | chr4_3:45359344-45359363 | None:intergenic | 20.0% |
| !!! | ATCTTATATCCTTAATCTTT+TGG | - | chr4_3:45359863-45359882 | Msa0643000:intron | 20.0% |
| !! | GATATTACTATTATGTATGT+TGG | - | chr4_3:45361071-45361090 | Msa0643000:five_prime_UTR | 20.0% |
| ! | CTTGAAAATAAAAAAGGACA+AGG | + | chr4_3:45357463-45357482 | None:intergenic | 25.0% |
| !!! | TTTTATTTTCAAGAGTCTAG+CGG | - | chr4_3:45357470-45357489 | Msa0643000:CDS | 25.0% |
| ! | ACTGATAAAGTAGATAATTG+CGG | - | chr4_3:45357514-45357533 | Msa0643000:CDS | 25.0% |
| ! | TCCTATGTTTCATTTCATTT+AGG | - | chr4_3:45357624-45357643 | Msa0643000:CDS | 25.0% |
| ! | TCCTAAATGAAATGAAACAT+AGG | + | chr4_3:45357628-45357647 | None:intergenic | 25.0% |
| !!! | TTGTTTTATTGGTTCAATGA+AGG | - | chr4_3:45357725-45357744 | Msa0643000:CDS | 25.0% |
| !!! | GTGTTTTTATTTTGATATGG+GGG | - | chr4_3:45357782-45357801 | Msa0643000:CDS | 25.0% |
| ! | GTTTATCAATTCATATTGCA+TGG | - | chr4_3:45358466-45358485 | Msa0643000:intron | 25.0% |
| ! | CTTATCACTTACAAAATTTC+AGG | - | chr4_3:45358530-45358549 | Msa0643000:intron | 25.0% |
| ! | TATATGAATGACTGGAATAA+GGG | + | chr4_3:45359089-45359108 | None:intergenic | 25.0% |
| ! | TTATATGAATGACTGGAATA+AGG | + | chr4_3:45359090-45359109 | None:intergenic | 25.0% |
| ! | ATGGAATTTATATGAATGAC+TGG | + | chr4_3:45359097-45359116 | None:intergenic | 25.0% |
| !!! | TTAAGAAGTGTTATCAATCA+TGG | - | chr4_3:45359219-45359238 | Msa0643000:CDS | 25.0% |
| ! | TTTAAACAAATCACTATGGT+TGG | + | chr4_3:45359340-45359359 | None:intergenic | 25.0% |
| ! | TAACTTCTACTTGACAATAT+TGG | - | chr4_3:45359373-45359392 | Msa0643000:intron | 25.0% |
| !!! | TGTTGCATCATTTTTTGATT+TGG | - | chr4_3:45359408-45359427 | Msa0643000:intron | 25.0% |
| ! | GGAAAACAACTATAAAAACA+CGG | + | chr4_3:45359526-45359545 | None:intergenic | 25.0% |
| ! | ATGAAAATGATTGAATTGCA+GGG | + | chr4_3:45359557-45359576 | None:intergenic | 25.0% |
| ! | TAAACTATAGTTGTTAACAC+CGG | + | chr4_3:45359912-45359931 | None:intergenic | 25.0% |
| !!! | TTTTGAAACTGAAACTTCAT+TGG | + | chr4_3:45360128-45360147 | None:intergenic | 25.0% |
| ! | ATGAGTAATGTAATAGTTGA+AGG | - | chr4_3:45360977-45360996 | Msa0643000:five_prime_UTR | 25.0% |
| AAAGAGAAAGTGAAGAAGAA+AGG | + | chr4_3:45356897-45356916 | None:intergenic | 30.0% | |
| ATGTTTAAAGGTGGAAACTT+TGG | + | chr4_3:45356996-45357015 | None:intergenic | 30.0% | |
| AAAGCTACCGTTAACTTTAA+CGG | - | chr4_3:45357224-45357243 | Msa0643000:CDS | 30.0% | |
| TGAAGAAACAAAAACTCACA+AGG | + | chr4_3:45357370-45357389 | None:intergenic | 30.0% | |
| !!! | GCTTTTTGTTTTTCTTCTGT+CGG | - | chr4_3:45357395-45357414 | Msa0643000:CDS | 30.0% |
| CTGATAAAGTAGATAATTGC+GGG | - | chr4_3:45357515-45357534 | Msa0643000:CDS | 30.0% | |
| ! | TTGTTTCTTAAAAGGGGATT+AGG | - | chr4_3:45357994-45358013 | Msa0643000:intron | 30.0% |
| ATATGACAGACACAACAAAA+AGG | + | chr4_3:45358083-45358102 | None:intergenic | 30.0% | |
| ! | AAATTCCACTTTAGAAGACA+AGG | + | chr4_3:45358183-45358202 | None:intergenic | 30.0% |
| !! | TCTTCTAAAGTGGAATTTGT+AGG | - | chr4_3:45358185-45358204 | Msa0643000:intron | 30.0% |
| TGTAAAACACAGGAGAAAAT+TGG | + | chr4_3:45358233-45358252 | None:intergenic | 30.0% | |
| CTGCTAAAACCTTAATATTG+TGG | - | chr4_3:45358368-45358387 | Msa0643000:intron | 30.0% | |
| AATTTCGGTCCACAATATTA+AGG | + | chr4_3:45358380-45358399 | None:intergenic | 30.0% | |
| TACAAAATTTCAGGATGAGA+CGG | - | chr4_3:45358539-45358558 | Msa0643000:intron | 30.0% | |
| TCTTACAAGAAATTGCACAA+AGG | - | chr4_3:45358577-45358596 | Msa0643000:intron | 30.0% | |
| CTTACAAGAAATTGCACAAA+GGG | - | chr4_3:45358578-45358597 | Msa0643000:intron | 30.0% | |
| !! | GGTTTTGATGCTATATTCAT+GGG | + | chr4_3:45358847-45358866 | None:intergenic | 30.0% |
| ACAAATTAAACCGTGGTTAT+GGG | + | chr4_3:45358890-45358909 | None:intergenic | 30.0% | |
| TTTCATAATCTATGATGCTG+TGG | - | chr4_3:45358993-45359012 | Msa0643000:intron | 30.0% | |
| GATAAAAAGGAGAGCAAAAA+TGG | + | chr4_3:45359116-45359135 | None:intergenic | 30.0% | |
| CACAAAACTCACAGATAAAA+AGG | + | chr4_3:45359129-45359148 | None:intergenic | 30.0% | |
| CATGAAAATGATTGAATTGC+AGG | + | chr4_3:45359558-45359577 | None:intergenic | 30.0% | |
| !! | GCCTAACACATTATTTTTCA+TGG | - | chr4_3:45359577-45359596 | Msa0643000:intron | 30.0% |
| GCCATGAAAAATAATGTGTT+AGG | + | chr4_3:45359581-45359600 | None:intergenic | 30.0% | |
| ACAATCAATTAGCAAAACTG+AGG | + | chr4_3:45359719-45359738 | None:intergenic | 30.0% | |
| ATAACAATGCCTTAGATTGA+TGG | - | chr4_3:45359746-45359765 | Msa0643000:intron | 30.0% | |
| ! | GTAATTTTGTTCATTGACAG+TGG | - | chr4_3:45359965-45359984 | Msa0643000:intron | 30.0% |
| GGAAATGAAATCATAGCATT+TGG | + | chr4_3:45360107-45360126 | None:intergenic | 30.0% | |
| AGTTTCAGTTTCAAAATCCA+AGG | - | chr4_3:45360132-45360151 | Msa0643000:intron | 30.0% | |
| ACAGGTTCATCTATTATAAC+TGG | + | chr4_3:45360680-45360699 | None:intergenic | 30.0% | |
| AAGAAAGGAAGAAGATGAAG+AGG | + | chr4_3:45356882-45356901 | None:intergenic | 35.0% | |
| !! | CATGGGTTGTTTTCTGTTAA+GGG | + | chr4_3:45356941-45356960 | None:intergenic | 35.0% |
| !! | TCATGGGTTGTTTTCTGTTA+AGG | + | chr4_3:45356942-45356961 | None:intergenic | 35.0% |
| ! | ATTAGCTTCAGAGGAATCAT+GGG | + | chr4_3:45356958-45356977 | None:intergenic | 35.0% |
| ! | AATTAGCTTCAGAGGAATCA+TGG | + | chr4_3:45356959-45356978 | None:intergenic | 35.0% |
| !! | TTTGAGTTGTGAGATTAGTG+AGG | - | chr4_3:45357837-45357856 | Msa0643000:CDS | 35.0% |
| TTAGTGAGGATGTAACTGTA+AGG | - | chr4_3:45357851-45357870 | Msa0643000:CDS | 35.0% | |
| TAGTGAGGATGTAACTGTAA+GGG | - | chr4_3:45357852-45357871 | Msa0643000:CDS | 35.0% | |
| TCACAATATCGCATACTCTT+TGG | + | chr4_3:45357937-45357956 | None:intergenic | 35.0% | |
| !! | GAAGCTTTTTCTCTTTATGC+TGG | - | chr4_3:45358050-45358069 | Msa0643000:intron | 35.0% |
| ! | CACTTTAGAAGACAAGGAAA+AGG | + | chr4_3:45358177-45358196 | None:intergenic | 35.0% |
| !! | CTTTTCCTTGTCTTCTAAAG+TGG | - | chr4_3:45358175-45358194 | Msa0643000:intron | 35.0% |
| AGGATCCTAAAATGTAGTTC+AGG | - | chr4_3:45358205-45358224 | Msa0643000:intron | 35.0% | |
| ! | TGGAACCTGAACTACATTTT+AGG | + | chr4_3:45358213-45358232 | None:intergenic | 35.0% |
| GATAGGTAACTGTAAAACAC+AGG | + | chr4_3:45358243-45358262 | None:intergenic | 35.0% | |
| CATGACTGATGGAAAAAGAT+AGG | + | chr4_3:45358260-45358279 | None:intergenic | 35.0% | |
| ! | CTATCTTTTTCCATCAGTCA+TGG | - | chr4_3:45358258-45358277 | Msa0643000:intron | 35.0% |
| ! | CAATTTAGAACCATGACTGA+TGG | + | chr4_3:45358271-45358290 | None:intergenic | 35.0% |
| !! | ATGGTTCTAAATTGCAGTTG+TGG | - | chr4_3:45358277-45358296 | Msa0643000:intron | 35.0% |
| GTATGTCTTCATTGTGTCAT+TGG | - | chr4_3:45358488-45358507 | Msa0643000:intron | 35.0% | |
| ACAAAATTTCAGGATGAGAC+GGG | - | chr4_3:45358540-45358559 | Msa0643000:intron | 35.0% | |
| AAGAAATTGCACAAAGGGTA+GGG | - | chr4_3:45358583-45358602 | Msa0643000:intron | 35.0% | |
| TTAGCTGGAATTACATTCAC+TGG | - | chr4_3:45358678-45358697 | Msa0643000:intron | 35.0% | |
| ! | CTCTGCTTGTTTCTTATTCT+TGG | + | chr4_3:45358712-45358731 | None:intergenic | 35.0% |
| GAAAATCTTCACAGAAAAGC+TGG | + | chr4_3:45358787-45358806 | None:intergenic | 35.0% | |
| !! | CGGTTTTGATGCTATATTCA+TGG | + | chr4_3:45358848-45358867 | None:intergenic | 35.0% |
| TGAAATATTGCCCATAACCA+CGG | - | chr4_3:45358877-45358896 | Msa0643000:intron | 35.0% | |
| CACAAATTAAACCGTGGTTA+TGG | + | chr4_3:45358891-45358910 | None:intergenic | 35.0% | |
| !! | CATAACCACGGTTTAATTTG+TGG | - | chr4_3:45358889-45358908 | Msa0643000:intron | 35.0% |
| GGTTTCAAAAACAAGTATGC+AGG | + | chr4_3:45359039-45359058 | None:intergenic | 35.0% | |
| ! | CAATCATGGATTGCTACAAA+TGG | - | chr4_3:45359233-45359252 | Msa0643000:CDS | 35.0% |
| TGACAACACTTTGCACTAAA+TGG | - | chr4_3:45359302-45359321 | Msa0643000:CDS | 35.0% | |
| GTCAAGTAGAAGTTATAGTG+TGG | + | chr4_3:45359368-45359387 | None:intergenic | 35.0% | |
| !!! | GGCTTCAGGTGATTTTTTAA+TGG | + | chr4_3:45359485-45359504 | None:intergenic | 35.0% |
| GCTACACTACCAAAAGATTA+AGG | + | chr4_3:45359875-45359894 | None:intergenic | 35.0% | |
| ! | GATGTCTTTTGGCAAATTAG+AGG | + | chr4_3:45360200-45360219 | None:intergenic | 35.0% |
| AGAAGAAAACGGTGACATAA+TGG | + | chr4_3:45360273-45360292 | None:intergenic | 35.0% | |
| ! | CTTTCTGGTGTAGAAGAAAA+CGG | + | chr4_3:45360284-45360303 | None:intergenic | 35.0% |
| ATATGTCGAATGGGAACATA+AGG | + | chr4_3:45360350-45360369 | None:intergenic | 35.0% | |
| ATTGCATTCCTTATGGTAAC+TGG | + | chr4_3:45360401-45360420 | None:intergenic | 35.0% | |
| ! | TACAGGTATTGCATTCCTTA+TGG | + | chr4_3:45360408-45360427 | None:intergenic | 35.0% |
| ! | ATAGGTTCATCTTTTCGAAC+CGG | + | chr4_3:45360542-45360561 | None:intergenic | 35.0% |
| !! | TCATTTTTGCTGATGGGAAT+AGG | + | chr4_3:45360560-45360579 | None:intergenic | 35.0% |
| ATCTATTATAACTGGTGGAG+CGG | + | chr4_3:45360672-45360691 | None:intergenic | 35.0% | |
| GGTTCATCTATTATAACTGG+TGG | + | chr4_3:45360677-45360696 | None:intergenic | 35.0% | |
| !! | AATATTCTCAGTTTTGGCGT+CGG | + | chr4_3:45360873-45360892 | None:intergenic | 35.0% |
| ! | TGCTGGAATATTCTCAGTTT+TGG | + | chr4_3:45360879-45360898 | None:intergenic | 35.0% |
| ! | TGTAGGTGAATTAGCTTCAG+AGG | + | chr4_3:45356967-45356986 | None:intergenic | 40.0% |
| GGAAACTTTGGTTGCTATGT+AGG | + | chr4_3:45356984-45357003 | None:intergenic | 40.0% | |
| ! | CTTTCTAGAGAGAGAAAGTG+AGG | - | chr4_3:45357090-45357109 | Msa0643000:CDS | 40.0% |
| TTATGCACGTGTATGAAGGT+AGG | + | chr4_3:45357175-45357194 | None:intergenic | 40.0% | |
| TCTCTTATGCACGTGTATGA+AGG | + | chr4_3:45357179-45357198 | None:intergenic | 40.0% | |
| TCATACACGTGCATAAGAGA+AGG | - | chr4_3:45357179-45357198 | Msa0643000:CDS | 40.0% | |
| GATCTCGCCGTTAAAGTTAA+CGG | + | chr4_3:45357234-45357253 | None:intergenic | 40.0% | |
| ! | CTTAGTTCTTTGTCTCATCG+TGG | - | chr4_3:45357317-45357336 | Msa0643000:CDS | 40.0% |
| TTTGCAGCAAGAGAATGAGA+AGG | + | chr4_3:45357344-45357363 | None:intergenic | 40.0% | |
| TCCCTTGAGTTTGACATGAT+CGG | - | chr4_3:45357887-45357906 | Msa0643000:CDS | 40.0% | |
| ACCGATCATGTCAAACTCAA+GGG | + | chr4_3:45357891-45357910 | None:intergenic | 40.0% | |
| TACCGATCATGTCAAACTCA+AGG | + | chr4_3:45357892-45357911 | None:intergenic | 40.0% | |
| TGACAGACACAACAAAAAGG+TGG | + | chr4_3:45358080-45358099 | None:intergenic | 40.0% | |
| CATTGCGAATGTTGACATTG+CGG | - | chr4_3:45358303-45358322 | Msa0643000:intron | 40.0% | |
| CAAGAAATTGCACAAAGGGT+AGG | - | chr4_3:45358582-45358601 | Msa0643000:intron | 40.0% | |
| AGAAATTGCACAAAGGGTAG+GGG | - | chr4_3:45358584-45358603 | Msa0643000:intron | 40.0% | |
| AGCAGAGAAAAATGCAGCTA+TGG | - | chr4_3:45358725-45358744 | Msa0643000:intron | 40.0% | |
| !! | CGTCTCTAAAGCAATGTAAG+TGG | - | chr4_3:45358757-45358776 | Msa0643000:intron | 40.0% |
| CACAACCACAAATTAAACCG+TGG | + | chr4_3:45358897-45358916 | None:intergenic | 40.0% | |
| !!! | GGTTGTGATCGTTGATTTTG+CGG | - | chr4_3:45358910-45358929 | Msa0643000:intron | 40.0% |
| !! | GTTGATTTTGCGGAGAATGT+GGG | - | chr4_3:45358920-45358939 | Msa0643000:intron | 40.0% |
| TGATGCTGTGGCAATAATTG+CGG | - | chr4_3:45359005-45359024 | Msa0643000:intron | 40.0% | |
| !! | TCTGTGAGTTTTGTGCATAG+TGG | - | chr4_3:45359134-45359153 | Msa0643000:intron | 40.0% |
| ACTATAGTAGCAACGCAGAA+TGG | - | chr4_3:45359179-45359198 | Msa0643000:CDS | 40.0% | |
| CTATAGTAGCAACGCAGAAT+GGG | - | chr4_3:45359180-45359199 | Msa0643000:CDS | 40.0% | |
| TATAGTAGCAACGCAGAATG+GGG | - | chr4_3:45359181-45359200 | Msa0643000:CDS | 40.0% | |
| ! | TCATGGATTGCTACAAATGG+TGG | - | chr4_3:45359236-45359255 | Msa0643000:CDS | 40.0% |
| AAACACGGTATGCTAACAGA+GGG | + | chr4_3:45359511-45359530 | None:intergenic | 40.0% | |
| AAAACACGGTATGCTAACAG+AGG | + | chr4_3:45359512-45359531 | None:intergenic | 40.0% | |
| TTGAATTGCAGGGTTGTAGT+TGG | + | chr4_3:45359547-45359566 | None:intergenic | 40.0% | |
| CTGGAATTAGAAAAGTGGCT+GGG | + | chr4_3:45359679-45359698 | None:intergenic | 40.0% | |
| CATGGCTGGAATTAGAAAAG+TGG | + | chr4_3:45359684-45359703 | None:intergenic | 40.0% | |
| GCACAAACACCATCAATCTA+AGG | + | chr4_3:45359758-45359777 | None:intergenic | 40.0% | |
| GTAGCCATTCTATTAGCAAC+CGG | - | chr4_3:45359890-45359909 | Msa0643000:intron | 40.0% | |
| ! | AACACCGGTTGCTAATAGAA+TGG | + | chr4_3:45359897-45359916 | None:intergenic | 40.0% |
| CTTCAGACGGTAATTCAGTA+AGG | + | chr4_3:45360063-45360082 | None:intergenic | 40.0% | |
| CTTACTGAATTACCGTCTGA+AGG | - | chr4_3:45360061-45360080 | Msa0643000:intron | 40.0% | |
| TTACCGTCTGAAGGAAAAGA+TGG | - | chr4_3:45360070-45360089 | Msa0643000:intron | 40.0% | |
| ! | TTGCCATCTTTTCCTTCAGA+CGG | + | chr4_3:45360076-45360095 | None:intergenic | 40.0% |
| GGAAGAATCTTTGATGTTGC+TGG | + | chr4_3:45360179-45360198 | None:intergenic | 40.0% | |
| GATGATCGCATATGTCGAAT+GGG | + | chr4_3:45360359-45360378 | None:intergenic | 40.0% | |
| AGATGATCGCATATGTCGAA+TGG | + | chr4_3:45360360-45360379 | None:intergenic | 40.0% | |
| ACTGCTTGCCGAATATTGAT+CGG | + | chr4_3:45360497-45360516 | None:intergenic | 40.0% | |
| TCCCATCAGCAAAAATGATC+TGG | - | chr4_3:45360562-45360581 | Msa0643000:CDS | 40.0% | |
| !! | GCCAGATCATTTTTGCTGAT+GGG | + | chr4_3:45360566-45360585 | None:intergenic | 40.0% |
| !! | TGCCAGATCATTTTTGCTGA+TGG | + | chr4_3:45360567-45360586 | None:intergenic | 40.0% |
| TTCGTCTACTGGAATTGGTA+GGG | + | chr4_3:45360744-45360763 | None:intergenic | 40.0% | |
| TCATCTTTGCTGATAGGAAC+AGG | + | chr4_3:45360767-45360786 | None:intergenic | 40.0% | |
| !! | TTTTTAACTGCTGATGCTGC+TGG | + | chr4_3:45360791-45360810 | None:intergenic | 40.0% |
| ! | GTTTTATCTGCACCACTAGT+TGG | + | chr4_3:45360851-45360870 | None:intergenic | 40.0% |
| TTGAAGGTTAGCATGAGCAA+TGG | - | chr4_3:45360993-45361012 | Msa0643000:five_prime_UTR | 40.0% | |
| ! | CGGGTTGGAATGTTTAAAGG+TGG | + | chr4_3:45357005-45357024 | None:intergenic | 45.0% |
| !! | GGTCGGGTTGGAATGTTTAA+AGG | + | chr4_3:45357008-45357027 | None:intergenic | 45.0% |
| !!! | ATCCGATCCGTTTTGGGATT+CGG | + | chr4_3:45357030-45357049 | None:intergenic | 45.0% |
| ! | GTACAGATCCGATCCGTTTT+GGG | + | chr4_3:45357036-45357055 | None:intergenic | 45.0% |
| TCTAGAGAGAGAAAGTGAGG+AGG | - | chr4_3:45357093-45357112 | Msa0643000:CDS | 45.0% | |
| !! | TTAACGGTAGCTTTGAACCG+CGG | + | chr4_3:45357218-45357237 | None:intergenic | 45.0% |
| !! | CGAAGTGTTGAACAGTACTG+TGG | + | chr4_3:45357266-45357285 | None:intergenic | 45.0% |
| CTGTTCAACACTTCGTCAAG+CGG | - | chr4_3:45357271-45357290 | Msa0643000:CDS | 45.0% | |
| GTTGACATTGCGGCAAAATG+TGG | - | chr4_3:45358313-45358332 | Msa0643000:intron | 45.0% | |
| TTGCAGTTGCAATGCCATTG+TGG | - | chr4_3:45358342-45358361 | Msa0643000:intron | 45.0% | |
| !! | GGTTTTAGCAGTCTCCACAA+TGG | + | chr4_3:45358359-45358378 | None:intergenic | 45.0% |
| AAAGTTGTGTACTGCGGCAA+CGG | + | chr4_3:45358612-45358631 | None:intergenic | 45.0% | |
| ! | GGACATCTACCTGTTTTCAC+CGG | - | chr4_3:45358645-45358664 | Msa0643000:intron | 45.0% |
| ! | TCTACCTGTTTTCACCGGTA+CGG | - | chr4_3:45358650-45358669 | Msa0643000:intron | 45.0% |
| AAAATGCAGCTATGGCAGCT+TGG | - | chr4_3:45358733-45358752 | Msa0643000:intron | 45.0% | |
| !!! | CGTTGATTTTGCGGAGAATG+TGG | - | chr4_3:45358919-45358938 | Msa0643000:intron | 45.0% |
| CGGAGAATGTGGGTCAAATA+TGG | - | chr4_3:45358930-45358949 | Msa0643000:intron | 45.0% | |
| GTTGATGCAGTCTCAATCGT+GGG | - | chr4_3:45358952-45358971 | Msa0643000:intron | 45.0% | |
| ! | TACTAGGCTGGGTATTGCTA+GGG | + | chr4_3:45359060-45359079 | None:intergenic | 45.0% |
| TAGCAATACCCAGCCTAGTA+CGG | - | chr4_3:45359060-45359079 | Msa0643000:intron | 45.0% | |
| GGAATAAGGGAAACCGTACT+AGG | + | chr4_3:45359076-45359095 | None:intergenic | 45.0% | |
| TTGGAATATCACAGCTGAGC+AGG | - | chr4_3:45359427-45359446 | Msa0643000:intron | 45.0% | |
| TGGAATATCACAGCTGAGCA+GGG | - | chr4_3:45359428-45359447 | Msa0643000:intron | 45.0% | |
| !!! | GTGGCTGGGACTTGTTTTAA+CGG | + | chr4_3:45359665-45359684 | None:intergenic | 45.0% |
| GCTGGAATTAGAAAAGTGGC+TGG | + | chr4_3:45359680-45359699 | None:intergenic | 45.0% | |
| TGCAAGCTCTTCAACTGAAC+CGG | - | chr4_3:45359998-45360017 | Msa0643000:intron | 45.0% | |
| TCCAGTTCGTCATTGTTCTC+CGG | + | chr4_3:45360020-45360039 | None:intergenic | 45.0% | |
| ATTCAGTAAGGCTCGTGCTA+TGG | + | chr4_3:45360051-45360070 | None:intergenic | 45.0% | |
| ATCTTTGATGTTGCTGGTCG+AGG | + | chr4_3:45360173-45360192 | None:intergenic | 45.0% | |
| ! | TGCTTCGAGGTGATGTCTTT+TGG | + | chr4_3:45360211-45360230 | None:intergenic | 45.0% |
| AAAAGACATCACCTCGAAGC+AGG | - | chr4_3:45360210-45360229 | Msa0643000:intron | 45.0% | |
| AATGGAACTGTGATCACTGC+TGG | + | chr4_3:45360255-45360274 | None:intergenic | 45.0% | |
| ACATATGCGATCATCTTGCC+AGG | - | chr4_3:45360364-45360383 | Msa0643000:intron | 45.0% | |
| CATATGCGATCATCTTGCCA+GGG | - | chr4_3:45360365-45360384 | Msa0643000:intron | 45.0% | |
| TTGCACCTCCAGTTACCATA+AGG | - | chr4_3:45360390-45360409 | Msa0643000:intron | 45.0% | |
| GCATTCCTTATGGTAACTGG+AGG | + | chr4_3:45360398-45360417 | None:intergenic | 45.0% | |
| TTGCTCCCCCGATCAATATT+CGG | - | chr4_3:45360486-45360505 | Msa0643000:intron | 45.0% | |
| TGCTTGCCGAATATTGATCG+GGG | + | chr4_3:45360495-45360514 | None:intergenic | 45.0% | |
| CTGCTTGCCGAATATTGATC+GGG | + | chr4_3:45360496-45360515 | None:intergenic | 45.0% | |
| TCGACTTTACTGATGGGAAC+CGG | + | chr4_3:45360629-45360648 | None:intergenic | 45.0% | |
| ! | GCTGGATCGACTTTACTGAT+GGG | + | chr4_3:45360635-45360654 | None:intergenic | 45.0% |
| ! | TGCTGGATCGACTTTACTGA+TGG | + | chr4_3:45360636-45360655 | None:intergenic | 45.0% |
| ! | TGATGGACCAACTTTGCTGA+CGG | + | chr4_3:45360705-45360724 | None:intergenic | 45.0% |
| GTTCGTCTACTGGAATTGGT+AGG | + | chr4_3:45360745-45360764 | None:intergenic | 45.0% | |
| ACAGGTTCGTCTACTGGAAT+TGG | + | chr4_3:45360749-45360768 | None:intergenic | 45.0% | |
| ATAGGAACAGGTTCGTCTAC+TGG | + | chr4_3:45360755-45360774 | None:intergenic | 45.0% | |
| GCTGGATCATCTTTGCTGAT+AGG | + | chr4_3:45360773-45360792 | None:intergenic | 45.0% | |
| TGCACTGTTTCAGATTCTGC+TGG | + | chr4_3:45360896-45360915 | None:intergenic | 45.0% | |
| ! | CAGAATCTGAAACAGTGCAG+AGG | - | chr4_3:45360897-45360916 | Msa0643000:five_prime_UTR | 45.0% |
| ! | ATCTGAAACAGTGCAGAGGT+TGG | - | chr4_3:45360901-45360920 | Msa0643000:five_prime_UTR | 45.0% |
| !!! | ATCCGTTTTGGGATTCGGGT+CGG | + | chr4_3:45357025-45357044 | None:intergenic | 50.0% |
| ACCCGAATCCCAAAACGGAT+CGG | - | chr4_3:45357025-45357044 | Msa0643000:CDS | 50.0% | |
| !!! | TCCGATCCGTTTTGGGATTC+GGG | + | chr4_3:45357029-45357048 | None:intergenic | 50.0% |
| ! | GGTACAGATCCGATCCGTTT+TGG | + | chr4_3:45357037-45357056 | None:intergenic | 50.0% |
| AAACGGATCGGATCTGTACC+AGG | - | chr4_3:45357037-45357056 | Msa0643000:CDS | 50.0% | |
| ATCTGTACCAGGTACAGCAC+TGG | - | chr4_3:45357048-45357067 | Msa0643000:CDS | 50.0% | |
| GAATGTTCCAGTGCTGTACC+TGG | + | chr4_3:45357058-45357077 | None:intergenic | 50.0% | |
| CAAGAACCAGCTACAAGAGC+TGG | - | chr4_3:45357130-45357149 | Msa0643000:CDS | 50.0% | |
| TTTGTGCCAGCTCTTGTAGC+TGG | + | chr4_3:45357139-45357158 | None:intergenic | 50.0% | |
| TGCCGCAGTACACAACTTTC+CGG | - | chr4_3:45358613-45358632 | Msa0643000:intron | 50.0% | |
| GACCGGAAAGTTGTGTACTG+CGG | + | chr4_3:45358618-45358637 | None:intergenic | 50.0% | |
| CAGTACACAACTTTCCGGTC+AGG | - | chr4_3:45358618-45358637 | Msa0643000:intron | 50.0% | |
| ACAACTTTCCGGTCAGGCTT+AGG | - | chr4_3:45358624-45358643 | Msa0643000:intron | 50.0% | |
| GTAGATGTCCTAAGCCTGAC+CGG | + | chr4_3:45358635-45358654 | None:intergenic | 50.0% | |
| TCCAGCTAATTCCACCGTAC+CGG | + | chr4_3:45358667-45358686 | None:intergenic | 50.0% | |
| ! | GGTTGATGCAGTCTCAATCG+TGG | - | chr4_3:45358951-45358970 | Msa0643000:intron | 50.0% |
| !! | TCGTGGGTGCGTTTTGTTCT+TGG | - | chr4_3:45358968-45358987 | Msa0643000:intron | 50.0% |
| ! | GTACTAGGCTGGGTATTGCT+AGG | + | chr4_3:45359061-45359080 | None:intergenic | 50.0% |
| AAGGGAAACCGTACTAGGCT+GGG | + | chr4_3:45359071-45359090 | None:intergenic | 50.0% | |
| TAAGGGAAACCGTACTAGGC+TGG | + | chr4_3:45359072-45359091 | None:intergenic | 50.0% | |
| CTGAGGCAGAGAAGTTGACA+TGG | + | chr4_3:45359702-45359721 | None:intergenic | 50.0% | |
| ACCGGAGAACAATGACGAAC+TGG | - | chr4_3:45360016-45360035 | Msa0643000:intron | 50.0% | |
| ATGTTGCTGGTCGAGGTTGA+GGG | + | chr4_3:45360166-45360185 | None:intergenic | 50.0% | |
| CTTCTACACCAGAAAGCCGA+TGG | - | chr4_3:45360288-45360307 | Msa0643000:intron | 50.0% | |
| CTCCTGCAGCAGGGAATTTA+GGG | + | chr4_3:45360322-45360341 | None:intergenic | 50.0% | |
| CATTACTTGTGGGGACACTG+CGG | + | chr4_3:45360447-45360466 | None:intergenic | 50.0% | |
| CAGTGTCCCCACAAGTAATG+CGG | - | chr4_3:45360447-45360466 | Msa0643000:intron | 50.0% | |
| AAGTGGCCGCATTACTTGTG+GGG | + | chr4_3:45360456-45360475 | None:intergenic | 50.0% | |
| GAAGTGGCCGCATTACTTGT+GGG | + | chr4_3:45360457-45360476 | None:intergenic | 50.0% | |
| GCTTGCCGAATATTGATCGG+GGG | + | chr4_3:45360494-45360513 | None:intergenic | 50.0% | |
| AGTATATGCTGCTGCACCAC+CGG | - | chr4_3:45360520-45360539 | Msa0643000:intron | 50.0% | |
| ! | GGTTCATCTTTTCGAACCGG+TGG | + | chr4_3:45360539-45360558 | None:intergenic | 50.0% |
| ACCGCTTCGAGTAGATGAAC+CGG | - | chr4_3:45360607-45360626 | Msa0643000:CDS | 50.0% | |
| ! | ACCGGTTCATCTACTCGAAG+CGG | + | chr4_3:45360611-45360630 | None:intergenic | 50.0% |
| CCAACTTTGCTGACGGTTAC+AGG | + | chr4_3:45360698-45360717 | None:intergenic | 50.0% | |
| CCTGTAACCGTCAGCAAAGT+TGG | - | chr4_3:45360695-45360714 | Msa0643000:CDS | 50.0% | |
| ! | CAGCAAAGTTGGTCCATCAC+CGG | - | chr4_3:45360706-45360725 | Msa0643000:CDS | 50.0% |
| !!! | TTTTGGGATTCGGGTCGGGT+TGG | + | chr4_3:45357020-45357039 | None:intergenic | 55.0% |
| ACCCGACCCGAATCCCAAAA+CGG | - | chr4_3:45357020-45357039 | Msa0643000:CDS | 55.0% | |
| !!! | TCCGTTTTGGGATTCGGGTC+GGG | + | chr4_3:45357024-45357043 | None:intergenic | 55.0% |
| AGCGGAACATTCAGCTGCTG+AGG | - | chr4_3:45357289-45357308 | Msa0643000:CDS | 55.0% | |
| GGAACATTCAGCTGCTGAGG+TGG | - | chr4_3:45357292-45357311 | Msa0643000:CDS | 55.0% | |
| ! | ACCTGTTTTCACCGGTACGG+TGG | - | chr4_3:45358653-45358672 | Msa0643000:intron | 55.0% |
| ! | TCCACCGTACCGGTGAAAAC+AGG | + | chr4_3:45358657-45358676 | None:intergenic | 55.0% |
| ACCGGTACGGTGGAATTAGC+TGG | - | chr4_3:45358663-45358682 | Msa0643000:intron | 55.0% | |
| TCACAGCTGAGCAGGGACAA+TGG | - | chr4_3:45359435-45359454 | Msa0643000:intron | 55.0% | |
| CACAGCTGAGCAGGGACAAT+GGG | - | chr4_3:45359436-45359455 | Msa0643000:intron | 55.0% | |
| TGAGCAGGGACAATGGGTCT+AGG | - | chr4_3:45359442-45359461 | Msa0643000:intron | 55.0% | |
| GAGCAGGGACAATGGGTCTA+GGG | - | chr4_3:45359443-45359462 | Msa0643000:intron | 55.0% | |
| GGGACAATGGGTCTAGGGAT+TGG | - | chr4_3:45359448-45359467 | Msa0643000:intron | 55.0% | |
| CTAACAGAGGGTGAGGCTTC+AGG | + | chr4_3:45359499-45359518 | None:intergenic | 55.0% | |
| CGGTATGCTAACAGAGGGTG+AGG | + | chr4_3:45359506-45359525 | None:intergenic | 55.0% | |
| GGCAGAGAAGTTGACATGGC+TGG | + | chr4_3:45359698-45359717 | None:intergenic | 55.0% | |
| GATGTTGCTGGTCGAGGTTG+AGG | + | chr4_3:45360167-45360186 | None:intergenic | 55.0% | |
| ! | ATTTAGGGCGACGGGTCCAT+CGG | + | chr4_3:45360307-45360326 | None:intergenic | 55.0% |
| ! | AGCAGGGAATTTAGGGCGAC+GGG | + | chr4_3:45360315-45360334 | None:intergenic | 55.0% |
| ! | CAGCAGGGAATTTAGGGCGA+CGG | + | chr4_3:45360316-45360335 | None:intergenic | 55.0% |
| GCTCCTGCAGCAGGGAATTT+AGG | + | chr4_3:45360323-45360342 | None:intergenic | 55.0% | |
| ! | TAACTGGAGGTGCAACTCCC+TGG | + | chr4_3:45360385-45360404 | None:intergenic | 55.0% |
| GGAAGTGGCCGCATTACTTG+TGG | + | chr4_3:45360458-45360477 | None:intergenic | 55.0% | |
| GGAGCAACTCGTACTGGAAG+TGG | + | chr4_3:45360473-45360492 | None:intergenic | 55.0% | |
| GGTGGTGCAGCAGCATATAC+TGG | + | chr4_3:45360521-45360540 | None:intergenic | 55.0% | |
| GCGGCATAAACTACAGGTGC+TGG | + | chr4_3:45360653-45360672 | None:intergenic | 55.0% | |
| GGTGGAGCGGCATAAACTAC+AGG | + | chr4_3:45360659-45360678 | None:intergenic | 55.0% | |
| ! | GCAGCATTTTCTGCCGGTGA+TGG | + | chr4_3:45360722-45360741 | None:intergenic | 55.0% |
| ! | GGTAGGGCAGCATTTTCTGC+CGG | + | chr4_3:45360728-45360747 | None:intergenic | 55.0% |
| GATGACCCAGCACCAACTAG+TGG | - | chr4_3:45360836-45360855 | Msa0643000:five_prime_UTR | 55.0% | |
| ! | CTGCACCACTAGTTGGTGCT+GGG | + | chr4_3:45360844-45360863 | None:intergenic | 55.0% |
| ! | TCTGCACCACTAGTTGGTGC+TGG | + | chr4_3:45360845-45360864 | None:intergenic | 55.0% |
| TCGAAGCAGGCATCCCGCAA+CGG | - | chr4_3:45360223-45360242 | Msa0643000:intron | 60.0% | |
| CGCCCTAAATTCCCTGCTGC+AGG | - | chr4_3:45360317-45360336 | Msa0643000:intron | 60.0% | |
| !! | AAGGTGCTGCTCCTGCAGCA+GGG | + | chr4_3:45360331-45360350 | None:intergenic | 60.0% |
| !! | TAAGGTGCTGCTCCTGCAGC+AGG | + | chr4_3:45360332-45360351 | None:intergenic | 60.0% |
| ATCGGGGGAGCAACTCGTAC+TGG | + | chr4_3:45360479-45360498 | None:intergenic | 60.0% | |
| AAGGTCCTGATCACGCGCCG+CGG | - | chr4_3:45357198-45357217 | Msa0643000:CDS | 65.0% | |
| TTGAACCGCGGCGCGTGATC+AGG | + | chr4_3:45357206-45357225 | None:intergenic | 65.0% | |
| !! | GGTTGAGGGCTGGTTGGCCT+TGG | + | chr4_3:45360152-45360171 | None:intergenic | 65.0% |
| ! | GGTCGAGGTTGAGGGCTGGT+TGG | + | chr4_3:45360158-45360177 | None:intergenic | 65.0% |
| TGCTGGTCGAGGTTGAGGGC+TGG | + | chr4_3:45360162-45360181 | None:intergenic | 65.0% | |
| GTTGCGGGATGCCTGCTTCG+AGG | + | chr4_3:45360224-45360243 | None:intergenic | 65.0% | |
| ! | ACTGCTGGCTGACGCCGTTG+CGG | + | chr4_3:45360240-45360259 | None:intergenic | 65.0% |
| !! | CGACGGGTCCATCGGCTTTC+TGG | + | chr4_3:45360299-45360318 | None:intergenic | 65.0% |
| !! | GCTGGTGGCGGGGAGAATAC+AGG | + | chr4_3:45360425-45360444 | None:intergenic | 65.0% |
| ACTTGTGGGGACACTGCGGC+TGG | + | chr4_3:45360443-45360462 | None:intergenic | 65.0% | |
| ! | CTGCTGGCTGACGCCGTTGC+GGG | + | chr4_3:45360239-45360258 | None:intergenic | 70.0% |
| TGTGGGGACACTGCGGCTGG+TGG | + | chr4_3:45360440-45360459 | None:intergenic | 70.0% | |
| ! | GGACACTGCGGCTGGTGGCG+GGG | + | chr4_3:45360435-45360454 | None:intergenic | 75.0% |
| GGGACACTGCGGCTGGTGGC+GGG | + | chr4_3:45360436-45360455 | None:intergenic | 75.0% | |
| GGGGACACTGCGGCTGGTGG+CGG | + | chr4_3:45360437-45360456 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45356801 | 45361124 | 45356801 | ID=Msa0643000;Name=Msa0643000 |
| chr4_3 | mRNA | 45356801 | 45361124 | 45356801 | ID=Msa0643000-mRNA-1;Parent=Msa0643000;Name=Msa0643000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=324|1|1|1|1|1|3|184|473 |
| chr4_3 | exon | 45356801 | 45357940 | 45356801 | ID=Msa0643000-mRNA-1:exon:10465;Parent=Msa0643000-mRNA-1 |
| chr4_3 | exon | 45359154 | 45359373 | 45359154 | ID=Msa0643000-mRNA-1:exon:10464;Parent=Msa0643000-mRNA-1 |
| chr4_3 | exon | 45360555 | 45361124 | 45360555 | ID=Msa0643000-mRNA-1:exon:10463;Parent=Msa0643000-mRNA-1 |
| chr4_3 | five_prime_UTR | 45360801 | 45361124 | 45360801 | ID=Msa0643000-mRNA-1:five_prime_utr;Parent=Msa0643000-mRNA-1 |
| chr4_3 | CDS | 45360555 | 45360800 | 45360555 | ID=Msa0643000-mRNA-1:cds;Parent=Msa0643000-mRNA-1 |
| chr4_3 | CDS | 45359154 | 45359373 | 45359154 | ID=Msa0643000-mRNA-1:cds;Parent=Msa0643000-mRNA-1 |
| chr4_3 | CDS | 45356985 | 45357940 | 45356985 | ID=Msa0643000-mRNA-1:cds;Parent=Msa0643000-mRNA-1 |
| chr4_3 | three_prime_UTR | 45356801 | 45356984 | 45356801 | ID=Msa0643000-mRNA-1:three_prime_utr;Parent=Msa0643000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
