AlfalfaGEDB | Msa0431520

M. sativa cultivar zhongmu-4 / Msa0431520

KEGG: K05387
GO: GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701
PFAM: PF00497.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0431520	XP_013461855.2	95.862	580	23	1	2	580	399	978	0.0	1145

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0431520	sp\|Q8LGN0\|GLR27_ARATH	50.683	586	253	13	2	580	394	950	0.0	556

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0431520	A0A396IXV2	95.862	580	23	1	2	580	399	978	0.0	1145

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0431520	-0.818784	1.636252e-52	-8.615850e-47
Msa0001460	Msa0431520	0.821539	3.825438e-53	-8.615850e-47
Msa0001950	Msa0431520	0.803289	3.741983e-49	-8.615850e-47
Msa0003470	Msa0431520	0.852021	6.065469e-61	-8.615850e-47
Msa0004350	Msa0431520	0.844236	8.567364e-59	-8.615850e-47
Msa0004610	Msa0431520	0.822361	2.468245e-53	-8.615850e-47
Msa0005350	Msa0431520	0.807988	3.861852e-50	-8.615850e-47
Msa0006700	Msa0431520	0.883946	2.917125e-71	-8.615850e-47
Msa0006820	Msa0431520	0.829966	3.828664e-55	-8.615850e-47
Msa0008850	Msa0431520	0.896241	4.454338e-76	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0431520	MtrunA17_Chr3g0136611	95.862	580	23	1	2	580	399	978	0.0	1145
Msa0431520	MtrunA17_Chr3g0136621	84.890	589	85	3	2	586	402	990	0.0	998
Msa0431520	MtrunA17_Chr8g0370261	45.339	472	244	9	7	477	404	862	1.61e-126	394
Msa0431520	MtrunA17_Chr3g0144141	41.031	524	290	12	7	529	442	947	6.27e-125	390
Msa0431520	MtrunA17_Chr5g0407171	42.138	477	255	13	7	478	403	863	4.48e-120	377
Msa0431520	MtrunA17_Chr2g0322691	40.292	479	272	9	7	484	404	869	9.07e-115	363
Msa0431520	MtrunA17_Chr8g0370281	36.969	541	314	12	7	539	319	840	2.33e-111	352
Msa0431520	MtrunA17_Chr4g0046101	37.794	553	308	12	3	553	387	905	3.53e-110	351
Msa0431520	MtrunA17_Chr2g0283231	36.489	581	332	16	1	571	387	940	3.44e-105	338
Msa0431520	MtrunA17_Chr5g0424541	37.302	504	278	13	2	491	387	866	7.30e-98	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0431520	AT2G29120.1	50.683	586	253	13	2	580	394	950	0.0	556
Msa0431520	AT2G29110.2	52.182	573	248	10	2	572	388	936	0.0	539
Msa0431520	AT2G29110.1	52.182	573	248	10	2	572	387	935	0.0	539
Msa0431520	AT2G29100.1	54.144	543	209	10	2	543	384	887	2.43e-180	534
Msa0431520	AT2G29100.2	54.144	543	209	10	2	543	386	889	2.66e-180	534
Msa0431520	AT5G27100.1	48.833	514	233	9	2	508	381	871	3.67e-157	473
Msa0431520	AT5G11210.9	48.361	488	238	7	2	486	308	784	5.16e-157	471
Msa0431520	AT5G11210.1	48.361	488	238	7	2	486	332	808	9.40e-157	471
Msa0431520	AT2G24710.1	49.487	487	234	5	2	481	381	862	1.62e-156	471
Msa0431520	AT2G24710.3	49.487	487	234	5	2	481	405	886	2.31e-156	471

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Find 124 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTACGAGTGCTAATA+GGG	0.352188	3_2:+83559553	None:intergenic
AAATGTGTTTGTGTTGATAT+AGG	0.376139	3_2:+83559519	None:intergenic
AAGATTTGTGGTGGTTGTAT+GGG	0.480530	3_2:-83560487	Msa0431520:CDS
AAGCCTGATGGTGAGATGGC+AGG	0.567308	3_2:-83561495	Msa0431520:CDS
AAGTCATATGGTAAGGCATA+AGG	0.455526	3_2:+83561531	None:intergenic
AAGTCCAAGACTGTTATTTG+AGG	0.455461	3_2:+83559616	None:intergenic
ACAACATCCAATTCTGTGTT+TGG	0.359057	3_2:+83559260	None:intergenic
ACAATGCCATACACAGAATC+TGG	0.438361	3_2:-83561254	Msa0431520:CDS
ACAGAAATTTGATGCGGTAG+TGG	0.468808	3_2:-83561321	Msa0431520:intron
ACATGTTATTATTGCCTATT+AGG	0.190238	3_2:+83561784	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTAGATAGCCCTTTATT+TGG	+	chr3_2:83559348-83559367	None:intergenic	30.0%
TAAAGGGCTATCTAGAAATT+TGG	-	chr3_2:83559350-83559369	Msa0431520:CDS	30.0%
GATATGTACTCTATTCCAAA+GGG	-	chr3_2:83559450-83559469	Msa0431520:CDS	30.0%
ATAGGAGTTCCAGTTAAAAA+TGG	-	chr3_2:83559507-83559526	Msa0431520:CDS	30.0%
ATATAACAATCACTGCAAGT+AGG	-	chr3_2:83559872-83559891	Msa0431520:intron	30.0%
TTGTTTCAATGAAAGACAAC+AGG	-	chr3_2:83559947-83559966	Msa0431520:intron	30.0%
TACTTCAAGGACTAAACATA+AGG	-	chr3_2:83560533-83560552	Msa0431520:intron	30.0%
CGTTTAAATATGCTTTGGTT+TGG	+	chr3_2:83560589-83560608	None:intergenic	30.0%
TAGTTGTTCAAAGTATGTCA+TGG	-	chr3_2:83561007-83561026	Msa0431520:intron	30.0%
TGAAAACAATTGAGAATGCA+TGG	-	chr3_2:83561488-83561507	Msa0431520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	83559196	83561993	83559196	ID=Msa0431520;Name=Msa0431520
chr3_2	mRNA	83559196	83561993	83559196	ID=Msa0431520-mRNA-1;Parent=Msa0431520;Name=Msa0431520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.75\|0.2\|1\|1\|1\|5\|0\|586
chr3_2	exon	83561991	83561993	83561991	ID=Msa0431520-mRNA-1:exon:23406;Parent=Msa0431520-mRNA-1
chr3_2	exon	83561458	83561913	83561458	ID=Msa0431520-mRNA-1:exon:23405;Parent=Msa0431520-mRNA-1
chr3_2	exon	83561027	83561339	83561027	ID=Msa0431520-mRNA-1:exon:23404;Parent=Msa0431520-mRNA-1
chr3_2	exon	83560125	83560534	83560125	ID=Msa0431520-mRNA-1:exon:23403;Parent=Msa0431520-mRNA-1
chr3_2	exon	83559196	83559774	83559196	ID=Msa0431520-mRNA-1:exon:23402;Parent=Msa0431520-mRNA-1
chr3_2	CDS	83561991	83561993	83561991	ID=Msa0431520-mRNA-1:cds;Parent=Msa0431520-mRNA-1
chr3_2	CDS	83561458	83561913	83561458	ID=Msa0431520-mRNA-1:cds;Parent=Msa0431520-mRNA-1
chr3_2	CDS	83561027	83561339	83561027	ID=Msa0431520-mRNA-1:cds;Parent=Msa0431520-mRNA-1
chr3_2	CDS	83560125	83560534	83560125	ID=Msa0431520-mRNA-1:cds;Parent=Msa0431520-mRNA-1
chr3_2	CDS	83559196	83559774	83559196	ID=Msa0431520-mRNA-1:cds;Parent=Msa0431520-mRNA-1

Gene Sequence

>Msa0431520

ATGTTACAAGCATCAATATATGAGATAATTAATGTGATTGGTGATGGTGAAAAGAGAGTTGGATTTTGGACACCAAATAAAGGGCTATCTAGAAATTTGGACACAGAAGGCCTAATAGGCAATAATAACATGTATTCTAGTTCTAAAAATGATCTTGGGTCAATCATATGGCCAGGGGATATGTACTCTATTCCAAAGGGATGGGAAATTCCTACTATTGGCAAGAAATTGAGGATAGGAGTTCCAGTTAAAAATGGATTTAACTACACTGAATTCTTGAAAGTAACATATGATCCTAGTACCAATTCAACACAAGCCACTGGCTTCTGCATTGATATCTTCAAAGCTGTGCTAGATGTTTTGCCTTATGCCTTACCATATGACTTTGTTCGATTTGCAAAGCCTGATGGTGAGATGGCAGGAACCTACAATGAGTTGATCGCTCAACTTTACGACGGGAAATTTGATGCGGTAGTGGGGGATATAACAATCACTGCAAGTAGGTCAAACTATGTTGATTTCACAATGCCATACACAGAATCTGGTGTGACAATGGTTGTTTCAATGAAAGACAACAGGAAGAAAAATGCATGGGCCTTTTTGAAGCCACTCACATGGGATCTTTGGGTGACATCAGCTTGTTCATTTGTGTTCATTGGATTTGTTGTTTGGGTCCTTGAACATAGAATAAACAATGATTTCAGGGGACCACTCTCTCATCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAACTATGGTCTATGCTCATAGAGAGAAAGTAGTGAGTAACTTGGCAAGATTTGTGGTGGTTGTATGGGTTTTTGTGGTTCTAATTCTTGTTCAAAGTTACACTGCAAGCTTGACTTCACTCTTGACAGTTGAACAACTAAGGCCAGCTATTACAGACGTACACCAACTTCTAAAGAATAAGATGAATGTCGGCTATCTCAAAGGTTCTTTTGTTTATGGAATTTTGAAGGACTTGGGTTTCGAAGATTCTCATCTCATTACTTATCAATCTGCTGAAGAATGTAATGAGCTTTTTATAAAAGGAAGTGTAAATGGTGGCATTGATGCTGCTTTTGATGAAGTTCCCTATATTAAGCACTTTCTTGGAACTTATAGTTGTTCAAAGTATGTCATGGTTGAACCAAGATTTAAAACTGGTGGCTTTGGCTATGCTTTTCCAAAAGGCTCACCTCTTGTGGCTGACATTTCAAGGGCAATCCTAAATGTGACTCAAGGAGACAAAATGAAAACAATTGAGAATGCATGGTTAAAGAAAACTAGTTGTCTAGATTCTAACACAGAAATTTCCTCAAATAACAGTCTTGGACTTGAAAGCTTTTGGGGTCTGTTTCTCATTGCAGGGATTGCTTCCCTATTAGCACTCGTAATCTTTGTTATCACATTCCTATATCAACACAAACACATTTGGTTACCCAATAGTCCAAGTACTTCAATATGGAGACGAATTCGCGTCTTGGTAATGATATTTGATCAAAGAGACTTAAACTCTCACACATTCAAGAAGAGTGGAAATAAAAATGAAAGCAGTAAAAGTCCTCATCATGATGATTTAGGTGCAGTTGAGGCCTCTCCAGGTACACATTGTCCACCTAGTCCATTTAGTCAAACTGAATCAAACGTTTCCTTGAATGACGATTTTAGTCCAAACACAGAATTGGATGTTGTACAAATTACTAATCAGGAAGTTTCCCCTGTGAATAACTGTGAAAGTAACCCCCAAGCAACTTGA

Protein sequence

>Msa0431520

MLQASIYEIINVIGDGEKRVGFWTPNKGLSRNLDTEGLIGNNNMYSSSKNDLGSIIWPGDMYSIPKGWEIPTIGKKLRIGVPVKNGFNYTEFLKVTYDPSTNSTQATGFCIDIFKAVLDVLPYALPYDFVRFAKPDGEMAGTYNELIAQLYDGKFDAVVGDITITASRSNYVDFTMPYTESGVTMVVSMKDNRKKNAWAFLKPLTWDLWVTSACSFVFIGFVVWVLEHRINNDFRGPLSHQIGTSLWFSFSTMVYAHREKVVSNLARFVVVVWVFVVLILVQSYTASLTSLLTVEQLRPAITDVHQLLKNKMNVGYLKGSFVYGILKDLGFEDSHLITYQSAEECNELFIKGSVNGGIDAAFDEVPYIKHFLGTYSCSKYVMVEPRFKTGGFGYAFPKGSPLVADISRAILNVTQGDKMKTIENAWLKKTSCLDSNTEISSNNSLGLESFWGLFLIAGIASLLALVIFVITFLYQHKHIWLPNSPSTSIWRRIRVLVMIFDQRDLNSHTFKKSGNKNESSKSPHHDDLGAVEASPGTHCPPSPFSQTESNVSLNDDFSPNTELDVVQITNQEVSPVNNCESNPQAT*