AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097380 MtrunA17_Chr7g0221181 91.005 189 14 2 1 189 1 186 1.09e-123 348
Msa1097380 MtrunA17_Chr3g0126191 27.168 173 114 3 17 189 34 194 3.00e-20 85.1
Msa1097380 MtrunA17_Chr5g0397281 33.663 101 67 0 80 180 82 182 3.39e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097380 AT1G71480.3 72.477 109 30 0 80 188 70 178 3.96e-56 175
Msa1097380 AT1G71480.1 51.497 167 75 2 24 188 16 178 2.65e-55 174
Msa1097380 AT1G71480.2 43.448 145 66 3 24 161 16 151 7.18e-35 120
Msa1097380 AT5G41470.1 39.796 98 59 0 80 177 74 171 2.63e-24 96.7

Find 38 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTAGTAACTGAATT+TGG 0.196315 7_3:-22679064 None:intergenic
AGTGGAGCATAAAATGTTTA+TGG 0.309641 7_3:+22678949 Msa1097380:exon
GTTACTAAGGTTGTTGGAAT+TGG 0.326378 7_3:+22679073 Msa1097380:CDS
GTCTTTCCACGTCCATTTGT+GGG 0.340761 7_3:+22679301 Msa1097380:CDS
GTTGGAGTGACCTGGCATTT+AGG 0.360279 7_3:+22679511 Msa1097380:CDS
TGTTATTGATGATTTGTCTA+TGG 0.388290 7_3:+22679474 Msa1097380:CDS
TGTCTTTCCACGTCCATTTG+TGG 0.401046 7_3:+22679300 Msa1097380:CDS
AATTCAGTTACTAAGGTTGT+TGG 0.412689 7_3:+22679067 Msa1097380:CDS
TGCTCCAAATTCAGTTACTA+AGG 0.429738 7_3:+22679060 Msa1097380:CDS
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7_3:-22680382 None:intergenic
CTCAGAAAATTGTGTGTATG+AGG 0.446496 7_3:+22679273 Msa1097380:CDS
CATCCTTTGCTAAAGGGAAA+AGG 0.457962 7_3:-22680376 None:intergenic
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7_3:-22680383 None:intergenic
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_3:+22680406 Msa1097380:CDS
ATTACCTTACGACCCACAAA+TGG 0.468812 7_3:-22679313 None:intergenic
TTGAAGAGTCTATGTTGTGC+TGG 0.476247 7_3:+22678922 Msa1097380:five_prime_UTR
CTATGTTGTGCTGGGTGAAG+TGG 0.500293 7_3:+22678931 Msa1097380:five_prime_UTR
ACGTCCATTTGTGGGTCGTA+AGG 0.526163 7_3:+22679309 Msa1097380:CDS
AGTGGTGAGAAATTTCTATG+AGG 0.536419 7_3:+22679210 Msa1097380:CDS
TTTGCTCTGAAACTTGTGCT+TGG 0.536475 7_3:+22680506 Msa1097380:three_prime_UTR
TTGTAATGCACCTAAATGCC+AGG 0.543656 7_3:-22679521 None:intergenic
CATCATCTGTTGGAGTGACC+TGG 0.548677 7_3:+22679503 Msa1097380:CDS
GTGGTGAGAAATTTCTATGA+GGG 0.551876 7_3:+22679211 Msa1097380:CDS
ATGGAGGACACATCATCTGT+TGG 0.564136 7_3:+22679493 Msa1097380:CDS
CTATGTGACAACGAAGTCAA+AGG 0.570861 7_3:-22679028 None:intergenic
AAACTGAGAAAAGTAGGTTG+TGG 0.580081 7_3:+22680604 Msa1097380:three_prime_UTR
GTTCACTGATTCTACAAGCA+AGG 0.580496 7_3:+22679441 Msa1097380:CDS
TGATGATTATATTCTTGTAG+AGG 0.584244 7_3:+22680577 Msa1097380:three_prime_UTR
TGAAGAGTCTATGTTGTGCT+GGG 0.594797 7_3:+22678923 Msa1097380:five_prime_UTR
TGTAGATTCAGCTTCAACAG+TGG 0.614055 7_3:+22679192 Msa1097380:CDS
GGGAATCAATGCACATGATG+TGG 0.616754 7_3:+22679231 Msa1097380:CDS
TATTGATGATTTGTCTATGG+AGG 0.624532 7_3:+22679477 Msa1097380:CDS
TTACGACCCACAAATGGACG+TGG 0.627873 7_3:-22679307 None:intergenic
TTAACATGACGAGAGTAGCA+TGG 0.627991 7_3:+22680476 Msa1097380:three_prime_UTR
TTAATGAACGCAGAATGGAA+AGG 0.649332 7_3:+22680349 Msa1097380:intron
GTTGTTATCATCAAAGTGTG+TGG 0.656507 7_3:-22679167 None:intergenic
CAAATGGACGTGGAAAGACA+AGG 0.682609 7_3:-22679297 None:intergenic
AATATTACAGTTAATAACAG+TGG 0.693819 7_3:+22679118 Msa1097380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTTACTACTAAATAA+GGG - chr7_3:22679855-22679874 None:intergenic 15.0%
!! AAAAACTTACTACTAAATAA+GGG - chr7_3:22679855-22679874 None:intergenic 15.0%
!! AATATTACAGTTAATAACAG+TGG + chr7_3:22679118-22679137 Msa1097380:CDS 20.0%
!! TAGAAGAAGTTTATAAAAAG+TGG + chr7_3:22679367-22679386 Msa1097380:intron 20.0%
!!! AATTACTAGTACTATTTTAC+AGG + chr7_3:22679396-22679415 Msa1097380:intron 20.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_3:22679854-22679873 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_3:22679856-22679875 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_3:22679854-22679873 Msa1097380:intron 20.0%
!! TGAAAATGATTGCAAAATAT+TGG + chr7_3:22680218-22680237 Msa1097380:intron 20.0%
!! AATATTACAGTTAATAACAG+TGG + chr7_3:22679118-22679137 Msa1097380:CDS 20.0%
!! TAGAAGAAGTTTATAAAAAG+TGG + chr7_3:22679367-22679386 Msa1097380:intron 20.0%
!!! AATTACTAGTACTATTTTAC+AGG + chr7_3:22679396-22679415 Msa1097380:intron 20.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_3:22679854-22679873 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_3:22679856-22679875 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_3:22679854-22679873 Msa1097380:intron 20.0%
!! TGAAAATGATTGCAAAATAT+TGG + chr7_3:22680218-22680237 Msa1097380:intron 20.0%
!! TGTTATTGATGATTTGTCTA+TGG + chr7_3:22679474-22679493 Msa1097380:CDS 25.0%
! TTTGGAAGTTACTAATAGAT+AGG - chr7_3:22680300-22680319 None:intergenic 25.0%
! ATCTATTAGTAACTTCCAAA+AGG + chr7_3:22680300-22680319 Msa1097380:intron 25.0%
!! AATACATTACATACACCTTT+TGG - chr7_3:22680318-22680337 None:intergenic 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_3:22680577-22680596 Msa1097380:three_prime_UTR 25.0%
!! TGTTATTGATGATTTGTCTA+TGG + chr7_3:22679474-22679493 Msa1097380:CDS 25.0%
! TTTGGAAGTTACTAATAGAT+AGG - chr7_3:22680300-22680319 None:intergenic 25.0%
! ATCTATTAGTAACTTCCAAA+AGG + chr7_3:22680300-22680319 Msa1097380:intron 25.0%
!! AATACATTACATACACCTTT+TGG - chr7_3:22680318-22680337 None:intergenic 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_3:22680577-22680596 Msa1097380:three_prime_UTR 25.0%
AGTGGAGCATAAAATGTTTA+TGG + chr7_3:22678949-22678968 Msa1097380:exon 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_3:22679067-22679086 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_3:22679067-22679086 Msa1097380:CDS 30.0%
GAAGAAAAAGAGACAGAAAA+TGG + chr7_3:22679095-22679114 Msa1097380:CDS 30.0%
! TATTGATGATTTGTCTATGG+AGG + chr7_3:22679477-22679496 Msa1097380:CDS 30.0%
AATATGAATTGAGTGGTACT+CGG + chr7_3:22679821-22679840 Msa1097380:intron 30.0%
AACTGTTATTGAGATACTAG+TGG - chr7_3:22680050-22680069 None:intergenic 30.0%
! ATTTGTTAATGAACGCAGAA+TGG + chr7_3:22680344-22680363 Msa1097380:intron 30.0%
AGTGGAGCATAAAATGTTTA+TGG + chr7_3:22678949-22678968 Msa1097380:exon 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_3:22679067-22679086 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_3:22679067-22679086 Msa1097380:CDS 30.0%
GAAGAAAAAGAGACAGAAAA+TGG + chr7_3:22679095-22679114 Msa1097380:CDS 30.0%
! TATTGATGATTTGTCTATGG+AGG + chr7_3:22679477-22679496 Msa1097380:CDS 30.0%
AATATGAATTGAGTGGTACT+CGG + chr7_3:22679821-22679840 Msa1097380:intron 30.0%
AACTGTTATTGAGATACTAG+TGG - chr7_3:22680050-22680069 None:intergenic 30.0%
! ATTTGTTAATGAACGCAGAA+TGG + chr7_3:22680344-22680363 Msa1097380:intron 30.0%
TGCTCCAAATTCAGTTACTA+AGG + chr7_3:22679060-22679079 Msa1097380:CDS 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_3:22679073-22679092 Msa1097380:CDS 35.0%
GTTGTTATCATCAAAGTGTG+TGG - chr7_3:22679170-22679189 None:intergenic 35.0%
AGTGGTGAGAAATTTCTATG+AGG + chr7_3:22679210-22679229 Msa1097380:CDS 35.0%
GTGGTGAGAAATTTCTATGA+GGG + chr7_3:22679211-22679230 Msa1097380:CDS 35.0%
CTCAGAAAATTGTGTGTATG+AGG + chr7_3:22679273-22679292 Msa1097380:CDS 35.0%
TCAACTTTGTGTTTCAATGC+AGG - chr7_3:22679680-22679699 None:intergenic 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_3:22679737-22679756 None:intergenic 35.0%
CGATACGAATATGAATTGAG+TGG + chr7_3:22679814-22679833 Msa1097380:intron 35.0%
AGAACAATCAGTCAGAAGAT+TGG - chr7_3:22679900-22679919 None:intergenic 35.0%
ATATAATGGCCCAATCAGAT+GGG - chr7_3:22680109-22680128 None:intergenic 35.0%
AATATAATGGCCCAATCAGA+TGG - chr7_3:22680110-22680129 None:intergenic 35.0%
ATCTGATTGGGCCATTATAT+TGG + chr7_3:22680109-22680128 Msa1097380:intron 35.0%
TCTGATTGGGCCATTATATT+GGG + chr7_3:22680110-22680129 Msa1097380:intron 35.0%
! TGGCCTTGATCTAAACATAT+TGG + chr7_3:22680135-22680154 Msa1097380:intron 35.0%
GGCCTTGATCTAAACATATT+GGG + chr7_3:22680136-22680155 Msa1097380:intron 35.0%
AGCCCAATATGTTTAGATCA+AGG - chr7_3:22680141-22680160 None:intergenic 35.0%
TTAATGAACGCAGAATGGAA+AGG + chr7_3:22680349-22680368 Msa1097380:intron 35.0%
AAACTGCATCCTTTGCTAAA+GGG - chr7_3:22680385-22680404 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG - chr7_3:22680386-22680405 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_3:22680393-22680412 Msa1097380:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_3:22680406-22680425 Msa1097380:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_3:22680598-22680617 Msa1097380:three_prime_UTR 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_3:22680604-22680623 Msa1097380:three_prime_UTR 35.0%
TGCTCCAAATTCAGTTACTA+AGG + chr7_3:22679060-22679079 Msa1097380:CDS 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_3:22679073-22679092 Msa1097380:CDS 35.0%
GTTGTTATCATCAAAGTGTG+TGG - chr7_3:22679170-22679189 None:intergenic 35.0%
AGTGGTGAGAAATTTCTATG+AGG + chr7_3:22679210-22679229 Msa1097380:CDS 35.0%
GTGGTGAGAAATTTCTATGA+GGG + chr7_3:22679211-22679230 Msa1097380:CDS 35.0%
CTCAGAAAATTGTGTGTATG+AGG + chr7_3:22679273-22679292 Msa1097380:CDS 35.0%
TCAACTTTGTGTTTCAATGC+AGG - chr7_3:22679680-22679699 None:intergenic 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_3:22679737-22679756 None:intergenic 35.0%
CGATACGAATATGAATTGAG+TGG + chr7_3:22679814-22679833 Msa1097380:intron 35.0%
AGAACAATCAGTCAGAAGAT+TGG - chr7_3:22679900-22679919 None:intergenic 35.0%
ATATAATGGCCCAATCAGAT+GGG - chr7_3:22680109-22680128 None:intergenic 35.0%
AATATAATGGCCCAATCAGA+TGG - chr7_3:22680110-22680129 None:intergenic 35.0%
ATCTGATTGGGCCATTATAT+TGG + chr7_3:22680109-22680128 Msa1097380:intron 35.0%
TCTGATTGGGCCATTATATT+GGG + chr7_3:22680110-22680129 Msa1097380:intron 35.0%
! TGGCCTTGATCTAAACATAT+TGG + chr7_3:22680135-22680154 Msa1097380:intron 35.0%
GGCCTTGATCTAAACATATT+GGG + chr7_3:22680136-22680155 Msa1097380:intron 35.0%
AGCCCAATATGTTTAGATCA+AGG - chr7_3:22680141-22680160 None:intergenic 35.0%
TTAATGAACGCAGAATGGAA+AGG + chr7_3:22680349-22680368 Msa1097380:intron 35.0%
AAACTGCATCCTTTGCTAAA+GGG - chr7_3:22680385-22680404 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG - chr7_3:22680386-22680405 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_3:22680393-22680412 Msa1097380:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_3:22680406-22680425 Msa1097380:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_3:22680598-22680617 Msa1097380:three_prime_UTR 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_3:22680604-22680623 Msa1097380:three_prime_UTR 35.0%
TTGAAGAGTCTATGTTGTGC+TGG + chr7_3:22678922-22678941 Msa1097380:five_prime_UTR 40.0%
TGAAGAGTCTATGTTGTGCT+GGG + chr7_3:22678923-22678942 Msa1097380:five_prime_UTR 40.0%
CTATGTGACAACGAAGTCAA+AGG - chr7_3:22679031-22679050 None:intergenic 40.0%
TGTAGATTCAGCTTCAACAG+TGG + chr7_3:22679192-22679211 Msa1097380:CDS 40.0%
ATTACCTTACGACCCACAAA+TGG - chr7_3:22679316-22679335 None:intergenic 40.0%
GTGGGTCGTAAGGTAATTTA+TGG + chr7_3:22679319-22679338 Msa1097380:intron 40.0%
!! GTTCACTGATTCTACAAGCA+AGG + chr7_3:22679441-22679460 Msa1097380:CDS 40.0%
TTGTAATGCACCTAAATGCC+AGG - chr7_3:22679524-22679543 None:intergenic 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_3:22679734-22679753 None:intergenic 40.0%
! ACTTAGAAAGTGTGAAGAGC+AGG + chr7_3:22679782-22679801 Msa1097380:intron 40.0%
! CTTAGAAAGTGTGAAGAGCA+GGG + chr7_3:22679783-22679802 Msa1097380:intron 40.0%
AGCTGTTGAGGTTGTAATCA+GGG + chr7_3:22679943-22679962 Msa1097380:intron 40.0%
TATAATGGCCCAATCAGATG+GGG - chr7_3:22680108-22680127 None:intergenic 40.0%
TTGGGCCATTATATTGGGTA+TGG + chr7_3:22680115-22680134 Msa1097380:intron 40.0%
CAAGGCCATACCCAATATAA+TGG - chr7_3:22680123-22680142 None:intergenic 40.0%
! AAGCCTTTTCCCTTTAGCAA+AGG + chr7_3:22680373-22680392 Msa1097380:CDS 40.0%
CATCCTTTGCTAAAGGGAAA+AGG - chr7_3:22680379-22680398 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_3:22680476-22680495 Msa1097380:three_prime_UTR 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_3:22680506-22680525 Msa1097380:three_prime_UTR 40.0%
TTGAAGAGTCTATGTTGTGC+TGG + chr7_3:22678922-22678941 Msa1097380:five_prime_UTR 40.0%
TGAAGAGTCTATGTTGTGCT+GGG + chr7_3:22678923-22678942 Msa1097380:five_prime_UTR 40.0%
CTATGTGACAACGAAGTCAA+AGG - chr7_3:22679031-22679050 None:intergenic 40.0%
TGTAGATTCAGCTTCAACAG+TGG + chr7_3:22679192-22679211 Msa1097380:CDS 40.0%
ATTACCTTACGACCCACAAA+TGG - chr7_3:22679316-22679335 None:intergenic 40.0%
GTGGGTCGTAAGGTAATTTA+TGG + chr7_3:22679319-22679338 Msa1097380:intron 40.0%
!! GTTCACTGATTCTACAAGCA+AGG + chr7_3:22679441-22679460 Msa1097380:CDS 40.0%
TTGTAATGCACCTAAATGCC+AGG - chr7_3:22679524-22679543 None:intergenic 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_3:22679734-22679753 None:intergenic 40.0%
! ACTTAGAAAGTGTGAAGAGC+AGG + chr7_3:22679782-22679801 Msa1097380:intron 40.0%
! CTTAGAAAGTGTGAAGAGCA+GGG + chr7_3:22679783-22679802 Msa1097380:intron 40.0%
AGCTGTTGAGGTTGTAATCA+GGG + chr7_3:22679943-22679962 Msa1097380:intron 40.0%
TATAATGGCCCAATCAGATG+GGG - chr7_3:22680108-22680127 None:intergenic 40.0%
TTGGGCCATTATATTGGGTA+TGG + chr7_3:22680115-22680134 Msa1097380:intron 40.0%
CAAGGCCATACCCAATATAA+TGG - chr7_3:22680123-22680142 None:intergenic 40.0%
! AAGCCTTTTCCCTTTAGCAA+AGG + chr7_3:22680373-22680392 Msa1097380:CDS 40.0%
CATCCTTTGCTAAAGGGAAA+AGG - chr7_3:22680379-22680398 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_3:22680476-22680495 Msa1097380:three_prime_UTR 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_3:22680506-22680525 Msa1097380:three_prime_UTR 40.0%
GGGAATCAATGCACATGATG+TGG + chr7_3:22679231-22679250 Msa1097380:CDS 45.0%
CAAATGGACGTGGAAAGACA+AGG - chr7_3:22679300-22679319 None:intergenic 45.0%
TGTCTTTCCACGTCCATTTG+TGG + chr7_3:22679300-22679319 Msa1097380:CDS 45.0%
GTCTTTCCACGTCCATTTGT+GGG + chr7_3:22679301-22679320 Msa1097380:CDS 45.0%
ATGGAGGACACATCATCTGT+TGG + chr7_3:22679493-22679512 Msa1097380:CDS 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + chr7_3:22679690-22679709 Msa1097380:intron 45.0%
GATTGGAGCGTATCACAACT+CGG - chr7_3:22679883-22679902 None:intergenic 45.0%
GAGCTGTTGAGGTTGTAATC+AGG + chr7_3:22679942-22679961 Msa1097380:intron 45.0%
TGTTGAGGTTGTAATCAGGG+CGG + chr7_3:22679946-22679965 Msa1097380:intron 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_3:22680012-22680031 Msa1097380:intron 45.0%
ACAATATGACGCGTTCTCGT+TGG - chr7_3:22680173-22680192 None:intergenic 45.0%
GGGAATCAATGCACATGATG+TGG + chr7_3:22679231-22679250 Msa1097380:CDS 45.0%
CAAATGGACGTGGAAAGACA+AGG - chr7_3:22679300-22679319 None:intergenic 45.0%
TGTCTTTCCACGTCCATTTG+TGG + chr7_3:22679300-22679319 Msa1097380:CDS 45.0%
GTCTTTCCACGTCCATTTGT+GGG + chr7_3:22679301-22679320 Msa1097380:CDS 45.0%
ATGGAGGACACATCATCTGT+TGG + chr7_3:22679493-22679512 Msa1097380:CDS 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + chr7_3:22679690-22679709 Msa1097380:intron 45.0%
GATTGGAGCGTATCACAACT+CGG - chr7_3:22679883-22679902 None:intergenic 45.0%
GAGCTGTTGAGGTTGTAATC+AGG + chr7_3:22679942-22679961 Msa1097380:intron 45.0%
TGTTGAGGTTGTAATCAGGG+CGG + chr7_3:22679946-22679965 Msa1097380:intron 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_3:22680012-22680031 Msa1097380:intron 45.0%
ACAATATGACGCGTTCTCGT+TGG - chr7_3:22680173-22680192 None:intergenic 45.0%
CTATGTTGTGCTGGGTGAAG+TGG + chr7_3:22678931-22678950 Msa1097380:five_prime_UTR 50.0%
TTACGACCCACAAATGGACG+TGG - chr7_3:22679310-22679329 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + chr7_3:22679309-22679328 Msa1097380:CDS 50.0%
CATCATCTGTTGGAGTGACC+TGG + chr7_3:22679503-22679522 Msa1097380:CDS 50.0%
GTTGGAGTGACCTGGCATTT+AGG + chr7_3:22679511-22679530 Msa1097380:CDS 50.0%
GAGGGTTATATCACCAGCTC+AGG - chr7_3:22679706-22679725 None:intergenic 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + chr7_3:22679931-22679950 Msa1097380:intron 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - chr7_3:22679935-22679954 None:intergenic 50.0%
TGTTCCCCGATATCTGCCAT+CGG + chr7_3:22679981-22680000 Msa1097380:intron 50.0%
ACAACCCCGATGGCAGATAT+CGG - chr7_3:22679990-22680009 None:intergenic 50.0%
AAGCTCGACCCCATCTGATT+GGG + chr7_3:22680097-22680116 Msa1097380:intron 50.0%
CTATGTTGTGCTGGGTGAAG+TGG + chr7_3:22678931-22678950 Msa1097380:five_prime_UTR 50.0%
TTACGACCCACAAATGGACG+TGG - chr7_3:22679310-22679329 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + chr7_3:22679309-22679328 Msa1097380:CDS 50.0%
CATCATCTGTTGGAGTGACC+TGG + chr7_3:22679503-22679522 Msa1097380:CDS 50.0%
GTTGGAGTGACCTGGCATTT+AGG + chr7_3:22679511-22679530 Msa1097380:CDS 50.0%
GAGGGTTATATCACCAGCTC+AGG - chr7_3:22679706-22679725 None:intergenic 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + chr7_3:22679931-22679950 Msa1097380:intron 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - chr7_3:22679935-22679954 None:intergenic 50.0%
TGTTCCCCGATATCTGCCAT+CGG + chr7_3:22679981-22680000 Msa1097380:intron 50.0%
ACAACCCCGATGGCAGATAT+CGG - chr7_3:22679990-22680009 None:intergenic 50.0%
AAGCTCGACCCCATCTGATT+GGG + chr7_3:22680097-22680116 Msa1097380:intron 50.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_3:22679724-22679743 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_3:22679728-22679747 None:intergenic 55.0%
TGGAGCGTATCACAACTCGG+AGG - chr7_3:22679880-22679899 None:intergenic 55.0%
GTTCCCCGATATCTGCCATC+GGG + chr7_3:22679982-22680001 Msa1097380:intron 55.0%
TTCCCCGATATCTGCCATCG+GGG + chr7_3:22679983-22680002 Msa1097380:intron 55.0%
AACCCCGATGGCAGATATCG+GGG - chr7_3:22679988-22680007 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG - chr7_3:22679989-22680008 None:intergenic 55.0%
CAATCAGATGGGGTCGAGCT+TGG - chr7_3:22680098-22680117 None:intergenic 55.0%
CAAGCTCGACCCCATCTGAT+TGG + chr7_3:22680096-22680115 Msa1097380:intron 55.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_3:22679724-22679743 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_3:22679728-22679747 None:intergenic 55.0%
TGGAGCGTATCACAACTCGG+AGG - chr7_3:22679880-22679899 None:intergenic 55.0%
GTTCCCCGATATCTGCCATC+GGG + chr7_3:22679982-22680001 Msa1097380:intron 55.0%
TTCCCCGATATCTGCCATCG+GGG + chr7_3:22679983-22680002 Msa1097380:intron 55.0%
AACCCCGATGGCAGATATCG+GGG - chr7_3:22679988-22680007 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG - chr7_3:22679989-22680008 None:intergenic 55.0%
CAATCAGATGGGGTCGAGCT+TGG - chr7_3:22680098-22680117 None:intergenic 55.0%
CAAGCTCGACCCCATCTGAT+TGG + chr7_3:22680096-22680115 Msa1097380:intron 55.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_3:22679725-22679744 None:intergenic 60.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_3:22679725-22679744 None:intergenic 60.0%
TGCCATCGGGGTTGTGCGCT+TGG + chr7_3:22679995-22680014 Msa1097380:intron 65.0%
AGCCAAGCGCACAACCCCGA+TGG - chr7_3:22680000-22680019 None:intergenic 65.0%
GATGGGGTCGAGCTTGGCGT+GGG - chr7_3:22680092-22680111 None:intergenic 65.0%
AGATGGGGTCGAGCTTGGCG+TGG - chr7_3:22680093-22680112 None:intergenic 65.0%
TGCCATCGGGGTTGTGCGCT+TGG + chr7_3:22679995-22680014 Msa1097380:intron 65.0%
AGCCAAGCGCACAACCCCGA+TGG - chr7_3:22680000-22680019 None:intergenic 65.0%
GATGGGGTCGAGCTTGGCGT+GGG - chr7_3:22680092-22680111 None:intergenic 65.0%
AGATGGGGTCGAGCTTGGCG+TGG - chr7_3:22680093-22680112 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 22678874 22680629 22678874 ID=Msa1097380;Name=Msa1097380
chr7_3 mRNA 22678874 22680629 22678874 ID=Msa1097380-mRNA-1;Parent=Msa1097380;Name=Msa1097380-mRNA-1;_AED=0.32;_eAED=0.32;_QI=88|1|1|1|1|1|3|182|189
chr7_3 exon 22678874 22679330 22678874 ID=Msa1097380-mRNA-1:exon:5001;Parent=Msa1097380-mRNA-1
chr7_3 exon 22679418 22679532 22679418 ID=Msa1097380-mRNA-1:exon:5002;Parent=Msa1097380-mRNA-1
chr7_3 exon 22680362 22680629 22680362 ID=Msa1097380-mRNA-1:exon:5003;Parent=Msa1097380-mRNA-1
chr7_3 five_prime_UTR 22678874 22678961 22678874 ID=Msa1097380-mRNA-1:five_prime_utr;Parent=Msa1097380-mRNA-1
chr7_3 CDS 22678962 22679330 22678962 ID=Msa1097380-mRNA-1:cds;Parent=Msa1097380-mRNA-1
chr7_3 CDS 22679418 22679532 22679418 ID=Msa1097380-mRNA-1:cds;Parent=Msa1097380-mRNA-1
chr7_3 CDS 22680362 22680447 22680362 ID=Msa1097380-mRNA-1:cds;Parent=Msa1097380-mRNA-1
chr7_3 three_prime_UTR 22680448 22680629 22680448 ID=Msa1097380-mRNA-1:three_prime_utr;Parent=Msa1097380-mRNA-1
Gene Sequence

>Msa1097380

ATGTTTATGGTGTGTAGTTCTAGTAGCAGTACGCAAGTGCAAGTGCTAATATTGAACTCAGCTTCACCTTTGACTTCGTTGTCACATAGAAGAATCTATGCTCCAAATTCAGTTACTAAGGTTGTTGGAATTGGAAGAAAAAGAGACAGAAAATGGAATATTACAGTTAATAACAGTGGTGAAAGTAATTCAGTTACAACAACTACCACACACTTTGATGATAACAACGTTGTAGATTCAGCTTCAACAGTGGTGAGAAATTTCTATGAGGGAATCAATGCACATGATGTGGATTCTGTACAATATCTTATCTCAGAAAATTGTGTGTATGAGGACCTTGTCTTTCCACGTCCATTTGTGGGTCGTAAGGAAATTATAGAGTTCTTCAAAAAGTTCACTGATTCTACAAGCAAGGATCTGCAGTTTGTTATTGATGATTTGTCTATGGAGGACACATCATCTGTTGGAGTGACCTGGCATTTAGAATGGAAAGGAAAGCCTTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGATCAATGGCAAGAGACAGATCACGTAA

Protein sequence

>Msa1097380

MFMVCSSSSSTQVQVLILNSASPLTSLSHRRIYAPNSVTKVVGIGRKRDRKWNITVNNSGESNSVTTTTTHFDDNNVVDSASTVVRNFYEGINAHDVDSVQYLISENCVYEDLVFPRPFVGRKEIIEFFKKFTDSTSKDLQFVIDDLSMEDTSSVGVTWHLEWKGKPFPFSKGCSFYRLEVINGKRQIT*