Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692420 | XP_013456765.1 | 95.238 | 189 | 9 | 0 | 1 | 189 | 1 | 189 | 5.00e-102 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692420 | A0A072UN48 | 95.238 | 189 | 9 | 0 | 1 | 189 | 1 | 189 | 2.39e-102 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050720 | Msa0692420 | 0.800186 | 1.621876e-48 | -8.615850e-47 |
| Msa0064550 | Msa0692420 | 0.803916 | 2.773940e-49 | -8.615850e-47 |
| Msa0092710 | Msa0692420 | 0.800589 | 1.342701e-48 | -8.615850e-47 |
| Msa0109490 | Msa0692420 | 0.805393 | 1.364076e-49 | -8.615850e-47 |
| Msa0609790 | Msa0692420 | 0.836532 | 8.854994e-57 | -8.615850e-47 |
| Msa0636720 | Msa0692420 | 0.813726 | 2.212668e-51 | -8.615850e-47 |
| Msa0692420 | Msa0738880 | 0.824271 | 8.834446e-54 | -8.615850e-47 |
| Msa0692420 | Msa0769830 | 0.804184 | 2.439627e-49 | -8.615850e-47 |
| Msa0692420 | Msa0806720 | 0.820117 | 8.125368e-53 | -8.615850e-47 |
| Msa0692420 | Msa0806760 | 0.813830 | 2.098922e-51 | -8.615850e-47 |
| Msa0692420 | Msa0809300 | 0.823913 | 1.072360e-53 | -8.615850e-47 |
| Msa0692420 | Msa0819320 | 0.822176 | 2.724406e-53 | -8.615850e-47 |
| Msa0692420 | Msa0819370 | 0.824573 | 7.502127e-54 | -8.615850e-47 |
| Msa0692420 | Msa0848380 | 0.817626 | 2.991788e-52 | -8.615850e-47 |
| Msa0692420 | Msa0848760 | 0.808925 | 2.437797e-50 | -8.615850e-47 |
| Msa0692420 | Msa0882700 | 0.804511 | 2.085284e-49 | -8.615850e-47 |
| Msa0692420 | Msa0945960 | 0.808409 | 3.141166e-50 | -8.615850e-47 |
| Msa0692420 | Msa0984000 | 0.807343 | 5.293893e-50 | -8.615850e-47 |
| Msa0692420 | Msa1030870 | 0.808069 | 3.712715e-50 | -8.615850e-47 |
| Msa0692420 | Msa1119860 | 0.801130 | 1.041101e-48 | -8.615850e-47 |
| Msa0692420 | Msa1144730 | 0.813758 | 2.176630e-51 | -8.615850e-47 |
| Msa0692420 | Msa1157730 | 0.825474 | 4.596492e-54 | -8.615850e-47 |
| Msa0692420 | Msa1177240 | 0.802243 | 6.152169e-49 | -8.615850e-47 |
| Msa0692420 | Msa1246370 | 0.804963 | 1.678291e-49 | -8.615850e-47 |
| Msa0692420 | Msa1293050 | 0.804166 | 2.460620e-49 | -8.615850e-47 |
| Msa0692420 | Msa1354090 | 0.862787 | 3.957964e-64 | -8.615850e-47 |
| Msa0692420 | Msa1358340 | 0.803453 | 3.460413e-49 | -8.615850e-47 |
| Msa0692420 | Msa1394900 | 0.807236 | 5.577258e-50 | -8.615850e-47 |
| Msa0692420 | Msa1434660 | 0.860881 | 1.515893e-63 | -8.615850e-47 |
| Msa0692420 | Msa1440610 | 0.800958 | 1.128764e-48 | -8.615850e-47 |
| Msa0692420 | Msa1466350 | 0.808184 | 3.508970e-50 | -8.615850e-47 |
| Msa0154270 | Msa0692420 | 0.811838 | 5.729166e-51 | -8.615850e-47 |
| Msa0155610 | Msa0692420 | 0.831720 | 1.422399e-55 | -8.615850e-47 |
| Msa0171920 | Msa0692420 | 0.805641 | 1.210341e-49 | -8.615850e-47 |
| Msa0183560 | Msa0692420 | 0.805483 | 1.306069e-49 | -8.615850e-47 |
| Msa0382590 | Msa0692420 | 0.835401 | 1.714787e-56 | -8.615850e-47 |
| Msa0392050 | Msa0692420 | 0.810807 | 9.594310e-51 | -8.615850e-47 |
| Msa0401340 | Msa0692420 | 0.804197 | 2.425175e-49 | -8.615850e-47 |
| Msa0432720 | Msa0692420 | 0.845574 | 3.730851e-59 | -8.615850e-47 |
| Msa0448120 | Msa0692420 | 0.811643 | 6.319464e-51 | -8.615850e-47 |
| Msa0469950 | Msa0692420 | 0.811014 | 8.651836e-51 | -8.615850e-47 |
| Msa0344680 | Msa0692420 | 0.809349 | 1.977630e-50 | -8.615850e-47 |
| Msa0525270 | Msa0692420 | 0.852481 | 4.487232e-61 | -8.615850e-47 |
| Msa0525280 | Msa0692420 | 0.846150 | 2.602860e-59 | -8.615850e-47 |
| Msa0549760 | Msa0692420 | 0.845778 | 3.283478e-59 | -8.615850e-47 |
| Msa0557490 | Msa0692420 | 0.807113 | 5.924645e-50 | -8.615850e-47 |
| Msa0583740 | Msa0692420 | 0.804458 | 2.139385e-49 | -8.615850e-47 |
| Msa0587900 | Msa0692420 | 0.807577 | 4.722569e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692420 | MtrunA17_Chr4g0042741 | 95.238 | 189 | 9 | 0 | 1 | 189 | 1 | 189 | 4.60e-106 | 302 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCGCAAATTTACCAATAT+TGG | 0.222768 | 4_4:-60976702 | None:intergenic |
| AATTGTGAGGGTGGCTTCTA+AGG | 0.266560 | 4_4:+60974706 | Msa0692420:CDS |
| ACCGCGTTGCAGCCCGCGTC+GGG | 0.276137 | 4_4:-60974622 | None:intergenic |
| GGCTGCAACGCGGTTGGATT+GGG | 0.277741 | 4_4:+60974631 | Msa0692420:CDS |
| AAACAACAATATTGAAGTTC+AGG | 0.324417 | 4_4:+60974484 | Msa0692420:CDS |
| AATGTTGAAACTATAGTTGT+AGG | 0.330315 | 4_4:+60974377 | Msa0692420:five_prime_UTR |
| GGGCTGCAACGCGGTTGGAT+TGG | 0.330424 | 4_4:+60974630 | Msa0692420:CDS |
| ATCATCACGTCGCAAGGTTC+AGG | 0.345575 | 4_4:+60976642 | Msa0692420:CDS |
| ATTGCAGAGTCCACCAATAT+TGG | 0.370341 | 4_4:+60976689 | Msa0692420:three_prime_UTR |
| ATTCTGAACCGTCCACCTTC+CGG | 0.370647 | 4_4:-60974835 | None:intergenic |
| GTATCACTATTACAATTTGC+AGG | 0.370713 | 4_4:+60976827 | Msa0692420:three_prime_UTR |
| TGGTCAATTACGTGCGTGGC+TGG | 0.395524 | 4_4:+60974761 | Msa0692420:CDS |
| TTGTAAAGTGTATATGAGTT+TGG | 0.406289 | 4_4:+60976745 | Msa0692420:three_prime_UTR |
| CGTAACTATGCAATGTGTGC+GGG | 0.429868 | 4_4:+60974731 | Msa0692420:CDS |
| ACGGTTCAGAATATCTTCTT+AGG | 0.449786 | 4_4:+60974846 | Msa0692420:CDS |
| TTACGGTAATATTTATATGC+AGG | 0.450893 | 4_4:-60976777 | None:intergenic |
| AGGAAATTCCTTCTTCATGA+TGG | 0.453632 | 4_4:-60974553 | None:intergenic |
| GAAGAAGAAGAACAAGAAGA+AGG | 0.463375 | 4_4:-60974521 | None:intergenic |
| CGCAAATTTACCAATATTGG+TGG | 0.466368 | 4_4:-60976699 | None:intergenic |
| AACCGCGTTGCAGCCCGCGT+CGG | 0.468668 | 4_4:-60974623 | None:intergenic |
| GTTCAGGTGCATCGAATTAG+TGG | 0.469483 | 4_4:+60976658 | Msa0692420:CDS |
| AACCTTGCGACGTGATGATA+AGG | 0.469622 | 4_4:-60976638 | None:intergenic |
| TGTAGCTGTGACGGCGGTGT+TGG | 0.471963 | 4_4:+60974787 | Msa0692420:CDS |
| CGGCGGTGTTGGTTTACGTC+GGG | 0.474783 | 4_4:+60974798 | Msa0692420:CDS |
| GACGCGGGCTGCAACGCGGT+TGG | 0.485105 | 4_4:+60974625 | Msa0692420:CDS |
| TGGTTTACGTCGGGATTCAA+AGG | 0.489575 | 4_4:+60974807 | Msa0692420:CDS |
| AACGGAACTTGACGCTGTCA+TGG | 0.500113 | 4_4:-60974579 | None:intergenic |
| TTCACCTTCCTCGCCACCAA+CGG | 0.518986 | 4_4:-60974597 | None:intergenic |
| TGAAATGAATAAGATGTTGA+AGG | 0.521333 | 4_4:+60974658 | Msa0692420:CDS |
| TCGGGATTCAAAGGCGTCGC+CGG | 0.522229 | 4_4:+60974816 | Msa0692420:CDS |
| ACGGAACTTGACGCTGTCAT+GGG | 0.523325 | 4_4:-60974578 | None:intergenic |
| AACAACAATATTGAAGTTCA+GGG | 0.523883 | 4_4:+60974485 | Msa0692420:CDS |
| CCACTCTCGAATCCTCTGAA+TGG | 0.525382 | 4_4:+60974441 | Msa0692420:CDS |
| AGTTCCGTTGGTGGCGAGGA+AGG | 0.531811 | 4_4:+60974593 | Msa0692420:CDS |
| CCGCGTTGCAGCCCGCGTCG+GGG | 0.537525 | 4_4:-60974621 | None:intergenic |
| GTCAAGTTCCGTTGGTGGCG+AGG | 0.544054 | 4_4:+60974589 | Msa0692420:CDS |
| GATTATTCTGTTCCATTCAG+AGG | 0.544251 | 4_4:-60974453 | None:intergenic |
| TCAAAGGCGTCGCCGGAAGG+TGG | 0.547716 | 4_4:+60974823 | Msa0692420:CDS |
| CCCCGACGCGGGCTGCAACG+CGG | 0.549132 | 4_4:+60974621 | Msa0692420:CDS |
| GTGCAATATTAAGCAAGAGT+TGG | 0.550580 | 4_4:-60976603 | None:intergenic |
| GGAAATTCCTTCTTCATGAT+GGG | 0.551150 | 4_4:-60974552 | None:intergenic |
| ACAGCGTCAAGTTCCGTTGG+TGG | 0.557405 | 4_4:+60974584 | Msa0692420:CDS |
| TTCTTCATGATGGGTAGGAG+TGG | 0.563504 | 4_4:-60974543 | None:intergenic |
| GGAAGGTGAAGCCCCGACGC+GGG | 0.567663 | 4_4:+60974610 | Msa0692420:CDS |
| GGCTGGAGCTGTAGCTGTGA+CGG | 0.568693 | 4_4:+60974778 | Msa0692420:CDS |
| ACTCCTACCCATCATGAAGA+AGG | 0.569002 | 4_4:+60974545 | Msa0692420:CDS |
| ATTCCTTCTTCATGATGGGT+AGG | 0.572462 | 4_4:-60974548 | None:intergenic |
| GATTCAAAGGCGTCGCCGGA+AGG | 0.574232 | 4_4:+60974820 | Msa0692420:CDS |
| ACGGCGGTGTTGGTTTACGT+CGG | 0.576717 | 4_4:+60974797 | Msa0692420:CDS |
| AGGCGTCGCCGGAAGGTGGA+CGG | 0.577749 | 4_4:+60974827 | Msa0692420:CDS |
| GTAACTATGCAATGTGTGCG+GGG | 0.581011 | 4_4:+60974732 | Msa0692420:CDS |
| TGAAACTATAGTTGTAGGCA+TGG | 0.582478 | 4_4:+60974382 | Msa0692420:exon |
| AGCCTTATCATCACGTCGCA+AGG | 0.587604 | 4_4:+60976636 | Msa0692420:CDS |
| GAAGAAGAACAAGAAGAAGG+AGG | 0.590130 | 4_4:-60974518 | None:intergenic |
| ACTTGACGCTGTCATGGGCG+AGG | 0.591287 | 4_4:-60974573 | None:intergenic |
| ATGACAGCGTCAAGTTCCGT+TGG | 0.597637 | 4_4:+60974581 | Msa0692420:CDS |
| TAAGATGTTGAAGGTGCGGA+TGG | 0.599773 | 4_4:+60974667 | Msa0692420:CDS |
| GCGGATGGACGCTATGAGAG+TGG | 0.599885 | 4_4:+60974682 | Msa0692420:CDS |
| CCATTCAGAGGATTCGAGAG+TGG | 0.600692 | 4_4:-60974441 | None:intergenic |
| ACAATATTGAAGTTCAGGGA+GGG | 0.623670 | 4_4:+60974489 | Msa0692420:CDS |
| TCGTAACTATGCAATGTGTG+CGG | 0.627278 | 4_4:+60974730 | Msa0692420:CDS |
| TGGAGCTGTAGCTGTGACGG+CGG | 0.631922 | 4_4:+60974781 | Msa0692420:CDS |
| AACAATATTGAAGTTCAGGG+AGG | 0.646038 | 4_4:+60974488 | Msa0692420:CDS |
| TAACTATGCAATGTGTGCGG+GGG | 0.646393 | 4_4:+60974733 | Msa0692420:CDS |
| TGAATAAGATGTTGAAGGTG+CGG | 0.652058 | 4_4:+60974663 | Msa0692420:CDS |
| AGGAAGGTGAAGCCCCGACG+CGG | 0.653291 | 4_4:+60974609 | Msa0692420:CDS |
| AACTATAGTTGTAGGCATGG+AGG | 0.654916 | 4_4:+60974385 | Msa0692420:exon |
| CTATGAGAGTGGAAATTGTG+AGG | 0.668421 | 4_4:+60974693 | Msa0692420:CDS |
| GAGAGTGGAAATTGTGAGGG+TGG | 0.678186 | 4_4:+60974697 | Msa0692420:CDS |
| TATGAGAGTGGAAATTGTGA+GGG | 0.692255 | 4_4:+60974694 | Msa0692420:CDS |
| GCATGGAGGAAATAAACGAG+TGG | 0.717528 | 4_4:+60974399 | Msa0692420:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATAAACTAAAGTAA+TGG | - | chr4_4:60976394-60976413 | None:intergenic | 10.0% |
| !!! | TTTTATCGAAGAAAAAAAAA+AGG | - | chr4_4:60975014-60975033 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTCTTCGATAAA+AGG | + | chr4_4:60975013-60975032 | Msa0692420:intron | 15.0% |
| !!! | TTTTTTTTTCTTCGATAAAA+GGG | + | chr4_4:60975014-60975033 | Msa0692420:intron | 15.0% |
| !!! | TAGAAATCAACATATTTTTT+CGG | - | chr4_4:60975688-60975707 | None:intergenic | 15.0% |
| !!! | TTTAATAGAATTTTGAATCA+AGG | + | chr4_4:60976503-60976522 | Msa0692420:intron | 15.0% |
| !! | TTTATAAGCATAACATATAA+TGG | - | chr4_4:60976560-60976579 | None:intergenic | 15.0% |
| !!! | TTATGCTTATAAAATTTTGT+TGG | + | chr4_4:60976567-60976586 | Msa0692420:intron | 15.0% |
| !!! | AGAAATCAACATATTTTTTC+GGG | - | chr4_4:60975687-60975706 | None:intergenic | 20.0% |
| !! | TATAAGATCTATATGTGATA+TGG | - | chr4_4:60975939-60975958 | None:intergenic | 20.0% |
| !! | AAAGAATAAAATGCTTTCTT+TGG | - | chr4_4:60975994-60976013 | None:intergenic | 20.0% |
| ! | AATGTTGAAACTATAGTTGT+AGG | + | chr4_4:60974377-60974396 | Msa0692420:five_prime_UTR | 25.0% |
| ! | AAACAACAATATTGAAGTTC+AGG | + | chr4_4:60974484-60974503 | Msa0692420:CDS | 25.0% |
| ! | AACAACAATATTGAAGTTCA+GGG | + | chr4_4:60974485-60974504 | Msa0692420:CDS | 25.0% |
| ! | TGAAATGAATAAGATGTTGA+AGG | + | chr4_4:60974658-60974677 | Msa0692420:CDS | 25.0% |
| ! | GATCAGAATTCTAATTACTA+TGG | - | chr4_4:60974936-60974955 | None:intergenic | 25.0% |
| ! | TATTACGTTTGTATGTAGTT+TGG | - | chr4_4:60975051-60975070 | None:intergenic | 25.0% |
| ! | ATGCCTATAAATATGAGAAA+GGG | + | chr4_4:60975204-60975223 | Msa0692420:intron | 25.0% |
| ! | TTACCCTTTCTCATATTTAT+AGG | - | chr4_4:60975210-60975229 | None:intergenic | 25.0% |
| ! | TGTTAAATGTAATACACATG+GGG | - | chr4_4:60975524-60975543 | None:intergenic | 25.0% |
| ! | GTGTTAAATGTAATACACAT+GGG | - | chr4_4:60975525-60975544 | None:intergenic | 25.0% |
| ! | AGTGTTAAATGTAATACACA+TGG | - | chr4_4:60975526-60975545 | None:intergenic | 25.0% |
| ! | AAAAATAAGAACCTAGCATT+TGG | - | chr4_4:60975725-60975744 | None:intergenic | 25.0% |
| ! | TTGGAATAATGTTTGGAAAT+GGG | - | chr4_4:60976025-60976044 | None:intergenic | 25.0% |
| ! | ATCGTCTAATTACTATTGTT+AGG | + | chr4_4:60976068-60976087 | Msa0692420:intron | 25.0% |
| !!! | AGCTTCACAATTTTTTTTTC+TGG | + | chr4_4:60976341-60976360 | Msa0692420:intron | 25.0% |
| ! | TGGCTTATTGAAAAAGTAAT+TGG | + | chr4_4:60976477-60976496 | Msa0692420:intron | 25.0% |
| ! | ATATGTAGCCAAAAAATTCA+AGG | - | chr4_4:60976726-60976745 | None:intergenic | 25.0% |
| ! | TTGTAAAGTGTATATGAGTT+TGG | + | chr4_4:60976745-60976764 | Msa0692420:three_prime_UTR | 25.0% |
| ! | TTACGGTAATATTTATATGC+AGG | - | chr4_4:60976780-60976799 | None:intergenic | 25.0% |
| AAAAAGATGAGGTGAGTATA+TGG | + | chr4_4:60974870-60974889 | Msa0692420:intron | 30.0% | |
| TATGCACTTTCAATTCATAC+AGG | - | chr4_4:60975154-60975173 | None:intergenic | 30.0% | |
| CATGCCTATAAATATGAGAA+AGG | + | chr4_4:60975203-60975222 | Msa0692420:intron | 30.0% | |
| CAGTATCTTTGGTTAATAAG+GGG | - | chr4_4:60975303-60975322 | None:intergenic | 30.0% | |
| GCAGTATCTTTGGTTAATAA+GGG | - | chr4_4:60975304-60975323 | None:intergenic | 30.0% | |
| TGCAGTATCTTTGGTTAATA+AGG | - | chr4_4:60975305-60975324 | None:intergenic | 30.0% | |
| !! | TGAGTTTTTAGAGATGAATC+AGG | - | chr4_4:60975466-60975485 | None:intergenic | 30.0% |
| TGTTATAGCTAGTAATCACA+AGG | - | chr4_4:60975500-60975519 | None:intergenic | 30.0% | |
| CATTTAACACTACCTCTATA+CGG | + | chr4_4:60975535-60975554 | Msa0692420:intron | 30.0% | |
| !! | ATTCTATAATTCAGGTTGAG+TGG | - | chr4_4:60975567-60975586 | None:intergenic | 30.0% |
| AGGTCAGTATTCTATAATTC+AGG | - | chr4_4:60975575-60975594 | None:intergenic | 30.0% | |
| ! | TTTTTCTAATCAGCCTAATC+AGG | - | chr4_4:60975800-60975819 | None:intergenic | 30.0% |
| TCAAGCAAATGAAATTGTTG+TGG | - | chr4_4:60975840-60975859 | None:intergenic | 30.0% | |
| ! | ATCTTCGCTTCATATTTTGT+GGG | - | chr4_4:60975876-60975895 | None:intergenic | 30.0% |
| ! | AATCTTCGCTTCATATTTTG+TGG | - | chr4_4:60975877-60975896 | None:intergenic | 30.0% |
| !! | TAATGATGGATTGAAGACTA+AGG | - | chr4_4:60975963-60975982 | None:intergenic | 30.0% |
| AATAATGTTTGGAAATGGGA+GGG | - | chr4_4:60976021-60976040 | None:intergenic | 30.0% | |
| CTTGGAATAATGTTTGGAAA+TGG | - | chr4_4:60976026-60976045 | None:intergenic | 30.0% | |
| TGTCTACTTGGAATAATGTT+TGG | - | chr4_4:60976032-60976051 | None:intergenic | 30.0% | |
| GTCTAATTACTATTGTTAGG+AGG | + | chr4_4:60976071-60976090 | Msa0692420:intron | 30.0% | |
| GAGTGAAAATTGTATATCGA+TGG | + | chr4_4:60976457-60976476 | Msa0692420:intron | 30.0% | |
| !!! | ATTTGCGACCTTGAATTTTT+TGG | + | chr4_4:60976715-60976734 | Msa0692420:three_prime_UTR | 30.0% |
| GTATCACTATTACAATTTGC+AGG | + | chr4_4:60976827-60976846 | Msa0692420:three_prime_UTR | 30.0% | |
| TGAAACTATAGTTGTAGGCA+TGG | + | chr4_4:60974382-60974401 | Msa0692420:exon | 35.0% | |
| GATTATTCTGTTCCATTCAG+AGG | - | chr4_4:60974456-60974475 | None:intergenic | 35.0% | |
| AACAATATTGAAGTTCAGGG+AGG | + | chr4_4:60974488-60974507 | Msa0692420:CDS | 35.0% | |
| ACAATATTGAAGTTCAGGGA+GGG | + | chr4_4:60974489-60974508 | Msa0692420:CDS | 35.0% | |
| GAAGAAGAAGAACAAGAAGA+AGG | - | chr4_4:60974524-60974543 | None:intergenic | 35.0% | |
| GGAAATTCCTTCTTCATGAT+GGG | - | chr4_4:60974555-60974574 | None:intergenic | 35.0% | |
| AGGAAATTCCTTCTTCATGA+TGG | - | chr4_4:60974556-60974575 | None:intergenic | 35.0% | |
| TGAATAAGATGTTGAAGGTG+CGG | + | chr4_4:60974663-60974682 | Msa0692420:CDS | 35.0% | |
| TATGAGAGTGGAAATTGTGA+GGG | + | chr4_4:60974694-60974713 | Msa0692420:CDS | 35.0% | |
| ACGGTTCAGAATATCTTCTT+AGG | + | chr4_4:60974846-60974865 | Msa0692420:CDS | 35.0% | |
| TCTTCTTAGGCAAAAAGATG+AGG | + | chr4_4:60974859-60974878 | Msa0692420:CDS | 35.0% | |
| TTGTATGTAGTTTGGCCTAA+CGG | - | chr4_4:60975043-60975062 | None:intergenic | 35.0% | |
| AAAATGTTAACACAATCCGC+TGG | + | chr4_4:60975106-60975125 | Msa0692420:intron | 35.0% | |
| TATTTATAGGCATGCAAACC+AGG | - | chr4_4:60975197-60975216 | None:intergenic | 35.0% | |
| CATGTCAATCCTTCATGATA+AGG | + | chr4_4:60975230-60975249 | Msa0692420:intron | 35.0% | |
| CATTAATCGCCTTATCATGA+AGG | - | chr4_4:60975242-60975261 | None:intergenic | 35.0% | |
| TCATGATAAGGCGATTAATG+AGG | + | chr4_4:60975242-60975261 | Msa0692420:intron | 35.0% | |
| CATGATAAGGCGATTAATGA+GGG | + | chr4_4:60975243-60975262 | Msa0692420:intron | 35.0% | |
| GAAAATCAAAGATGAGTCGA+GGG | + | chr4_4:60975274-60975293 | Msa0692420:intron | 35.0% | |
| GTGTTCATGTCAAAACTTTG+GGG | - | chr4_4:60975400-60975419 | None:intergenic | 35.0% | |
| GGTGTTCATGTCAAAACTTT+GGG | - | chr4_4:60975401-60975420 | None:intergenic | 35.0% | |
| !!! | CCGAAATTTGGGCTATTTTT+CGG | - | chr4_4:60975422-60975441 | None:intergenic | 35.0% |
| CCGAAAAATAGCCCAAATTT+CGG | + | chr4_4:60975419-60975438 | Msa0692420:intron | 35.0% | |
| ! | CTTTGGCTGCTTTATAATGA+TGG | - | chr4_4:60975977-60975996 | None:intergenic | 35.0% |
| ATAATGTTTGGAAATGGGAG+GGG | - | chr4_4:60976020-60976039 | None:intergenic | 35.0% | |
| GAATAATGTTTGGAAATGGG+AGG | - | chr4_4:60976022-60976041 | None:intergenic | 35.0% | |
| CACATTGATGTATGTCTACT+TGG | - | chr4_4:60976044-60976063 | None:intergenic | 35.0% | |
| ATACCATTGTTGAGTCATGA+GGG | + | chr4_4:60976122-60976141 | Msa0692420:intron | 35.0% | |
| !!! | TTTTTTCATCCAAGTGAGAG+TGG | + | chr4_4:60976253-60976272 | Msa0692420:intron | 35.0% |
| TTCACATGTGACTACATGAA+GGG | - | chr4_4:60976286-60976305 | None:intergenic | 35.0% | |
| GTGCAATATTAAGCAAGAGT+TGG | - | chr4_4:60976606-60976625 | None:intergenic | 35.0% | |
| CGCAAATTTACCAATATTGG+TGG | - | chr4_4:60976702-60976721 | None:intergenic | 35.0% | |
| GGTCGCAAATTTACCAATAT+TGG | - | chr4_4:60976705-60976724 | None:intergenic | 35.0% | |
| AACTATAGTTGTAGGCATGG+AGG | + | chr4_4:60974385-60974404 | Msa0692420:exon | 40.0% | |
| GAAGAAGAACAAGAAGAAGG+AGG | - | chr4_4:60974521-60974540 | None:intergenic | 40.0% | |
| !! | ATTCCTTCTTCATGATGGGT+AGG | - | chr4_4:60974551-60974570 | None:intergenic | 40.0% |
| CTATGAGAGTGGAAATTGTG+AGG | + | chr4_4:60974693-60974712 | Msa0692420:CDS | 40.0% | |
| TCGTAACTATGCAATGTGTG+CGG | + | chr4_4:60974730-60974749 | Msa0692420:CDS | 40.0% | |
| CTATTTAGATCATCCACCAG+CGG | - | chr4_4:60975125-60975144 | None:intergenic | 40.0% | |
| CGAAAATCAAAGATGAGTCG+AGG | + | chr4_4:60975273-60975292 | Msa0692420:intron | 40.0% | |
| CTCGACTATTGCAGTATCTT+TGG | - | chr4_4:60975314-60975333 | None:intergenic | 40.0% | |
| CGGTGTTCATGTCAAAACTT+TGG | - | chr4_4:60975402-60975421 | None:intergenic | 40.0% | |
| TTAGAGATGAATCAGGTGTG+TGG | - | chr4_4:60975459-60975478 | None:intergenic | 40.0% | |
| AATACTGACCTTGCAAGTGT+GGG | + | chr4_4:60975584-60975603 | Msa0692420:intron | 40.0% | |
| ! | TGTGGGAATTTTGCGTACAT+TGG | + | chr4_4:60975601-60975620 | Msa0692420:intron | 40.0% |
| ! | GTGGGAATTTTGCGTACATT+GGG | + | chr4_4:60975602-60975621 | Msa0692420:intron | 40.0% |
| TGAACATGTTGTATGTAGCG+AGG | - | chr4_4:60975652-60975671 | None:intergenic | 40.0% | |
| AACCTAGCATTTGGCATATC+TGG | - | chr4_4:60975716-60975735 | None:intergenic | 40.0% | |
| AGAATCTCTAGATCTGTGAG+TGG | - | chr4_4:60975756-60975775 | None:intergenic | 40.0% | |
| CTAATCAGGAGCTTAAGGAA+TGG | - | chr4_4:60975786-60975805 | None:intergenic | 40.0% | |
| CATTCCTTAAGCTCCTGATT+AGG | + | chr4_4:60975784-60975803 | Msa0692420:intron | 40.0% | |
| GATACCATTGTTGAGTCATG+AGG | + | chr4_4:60976121-60976140 | Msa0692420:intron | 40.0% | |
| TACCATTGTTGAGTCATGAG+GGG | + | chr4_4:60976123-60976142 | Msa0692420:intron | 40.0% | |
| TCACATGTGACTACATGAAG+GGG | - | chr4_4:60976285-60976304 | None:intergenic | 40.0% | |
| CTTCACATGTGACTACATGA+AGG | - | chr4_4:60976287-60976306 | None:intergenic | 40.0% | |
| TGTGAATATGTCCTGCGAAA+AGG | + | chr4_4:60976534-60976553 | Msa0692420:intron | 40.0% | |
| ! | ACATATAATGGCCTTTTCGC+AGG | - | chr4_4:60976548-60976567 | None:intergenic | 40.0% |
| ATTGCAGAGTCCACCAATAT+TGG | + | chr4_4:60976689-60976708 | Msa0692420:three_prime_UTR | 40.0% | |
| GCATGGAGGAAATAAACGAG+TGG | + | chr4_4:60974399-60974418 | Msa0692420:exon | 45.0% | |
| !! | TTCTTCATGATGGGTAGGAG+TGG | - | chr4_4:60974546-60974565 | None:intergenic | 45.0% |
| ACTCCTACCCATCATGAAGA+AGG | + | chr4_4:60974545-60974564 | Msa0692420:CDS | 45.0% | |
| ! | TAAGATGTTGAAGGTGCGGA+TGG | + | chr4_4:60974667-60974686 | Msa0692420:CDS | 45.0% |
| AATTGTGAGGGTGGCTTCTA+AGG | + | chr4_4:60974706-60974725 | Msa0692420:CDS | 45.0% | |
| CGTAACTATGCAATGTGTGC+GGG | + | chr4_4:60974731-60974750 | Msa0692420:CDS | 45.0% | |
| GTAACTATGCAATGTGTGCG+GGG | + | chr4_4:60974732-60974751 | Msa0692420:CDS | 45.0% | |
| TAACTATGCAATGTGTGCGG+GGG | + | chr4_4:60974733-60974752 | Msa0692420:CDS | 45.0% | |
| !! | GTTTTGGTCAATTACGTGCG+TGG | + | chr4_4:60974757-60974776 | Msa0692420:CDS | 45.0% |
| TGGTTTACGTCGGGATTCAA+AGG | + | chr4_4:60974807-60974826 | Msa0692420:CDS | 45.0% | |
| TGAGGTGAGTATATGGCATC+TGG | + | chr4_4:60974877-60974896 | Msa0692420:intron | 45.0% | |
| ! | AGATGTCCTAAGTATCGTCG+CGG | + | chr4_4:60974962-60974981 | Msa0692420:intron | 45.0% |
| ATGTTAACACAATCCGCTGG+TGG | + | chr4_4:60975109-60975128 | Msa0692420:intron | 45.0% | |
| !!! | GGTGGTTTTGGCCGAAATTT+GGG | - | chr4_4:60975433-60975452 | None:intergenic | 45.0% |
| !!! | AGGTGGTTTTGGCCGAAATT+TGG | - | chr4_4:60975434-60975453 | None:intergenic | 45.0% |
| GATGAATCAGGTGTGTGGTT+AGG | - | chr4_4:60975454-60975473 | None:intergenic | 45.0% | |
| AGTAATCACAAGGCTGCATG+TGG | - | chr4_4:60975490-60975509 | None:intergenic | 45.0% | |
| !! | GAGTGGAAAGTACCGTATAG+AGG | - | chr4_4:60975550-60975569 | None:intergenic | 45.0% |
| GAATACTGACCTTGCAAGTG+TGG | + | chr4_4:60975583-60975602 | Msa0692420:intron | 45.0% | |
| GCAAAATTCCCACACTTGCA+AGG | - | chr4_4:60975595-60975614 | None:intergenic | 45.0% | |
| !! | TAGCGAGGCAGTCTTATTGA+TGG | - | chr4_4:60975637-60975656 | None:intergenic | 45.0% |
| AGCCAGATATGCCAAATGCT+AGG | + | chr4_4:60975711-60975730 | Msa0692420:intron | 45.0% | |
| TCTCTAGATCTGTGAGTGGA+GGG | - | chr4_4:60975752-60975771 | None:intergenic | 45.0% | |
| ATCTCTAGATCTGTGAGTGG+AGG | - | chr4_4:60975753-60975772 | None:intergenic | 45.0% | |
| TCAGCCTAATCAGGAGCTTA+AGG | - | chr4_4:60975791-60975810 | None:intergenic | 45.0% | |
| TCGACATGAGAAGAACGCAA+AGG | + | chr4_4:60975896-60975915 | Msa0692420:intron | 45.0% | |
| AGTCCGGTGAATCATCATGT+TGG | + | chr4_4:60976146-60976165 | Msa0692420:intron | 45.0% | |
| GGTCCAACATGATGATTCAC+CGG | - | chr4_4:60976152-60976171 | None:intergenic | 45.0% | |
| ! | CAAGTTTGATCGATTCTGCG+CGG | - | chr4_4:60976369-60976388 | None:intergenic | 45.0% |
| AACCTTGCGACGTGATGATA+AGG | - | chr4_4:60976641-60976660 | None:intergenic | 45.0% | |
| GTTCAGGTGCATCGAATTAG+TGG | + | chr4_4:60976658-60976677 | Msa0692420:CDS | 45.0% | |
| !!! | TTTAGTTTATTTAATTAAAA+CGG | + | chr4_4:60976398-60976417 | Msa0692420:intron | 5.0% |
| !!! | ATTTATTTAGATTTTAATTA+CGG | - | chr4_4:60976797-60976816 | None:intergenic | 5.0% |
| CCATTCAGAGGATTCGAGAG+TGG | - | chr4_4:60974444-60974463 | None:intergenic | 50.0% | |
| CCACTCTCGAATCCTCTGAA+TGG | + | chr4_4:60974441-60974460 | Msa0692420:CDS | 50.0% | |
| ACGGAACTTGACGCTGTCAT+GGG | - | chr4_4:60974581-60974600 | None:intergenic | 50.0% | |
| AACGGAACTTGACGCTGTCA+TGG | - | chr4_4:60974582-60974601 | None:intergenic | 50.0% | |
| ATGACAGCGTCAAGTTCCGT+TGG | + | chr4_4:60974581-60974600 | Msa0692420:CDS | 50.0% | |
| GAGAGTGGAAATTGTGAGGG+TGG | + | chr4_4:60974697-60974716 | Msa0692420:CDS | 50.0% | |
| ATTCTGAACCGTCCACCTTC+CGG | - | chr4_4:60974838-60974857 | None:intergenic | 50.0% | |
| ! | CTAAGTATCGTCGCGGTGTA+GGG | + | chr4_4:60974969-60974988 | Msa0692420:intron | 50.0% |
| ! | TAAGTATCGTCGCGGTGTAG+GGG | + | chr4_4:60974970-60974989 | Msa0692420:intron | 50.0% |
| TCGATAAAAGGGACGCCGTT+AGG | + | chr4_4:60975025-60975044 | Msa0692420:intron | 50.0% | |
| CTCTGCTCTTGCTCTTGCAT+GGG | - | chr4_4:60975371-60975390 | None:intergenic | 50.0% | |
| ACTCTGCTCTTGCTCTTGCA+TGG | - | chr4_4:60975372-60975391 | None:intergenic | 50.0% | |
| ! | GGTGTGTGGTTAGGTGGTTT+TGG | - | chr4_4:60975445-60975464 | None:intergenic | 50.0% |
| GAATCAGGTGTGTGGTTAGG+TGG | - | chr4_4:60975451-60975470 | None:intergenic | 50.0% | |
| !! | CGAGGCAGTCTTATTGATGG+AGG | - | chr4_4:60975634-60975653 | None:intergenic | 50.0% |
| CTCCCCTCATGACTCAACAA+TGG | - | chr4_4:60976128-60976147 | None:intergenic | 50.0% | |
| CTCACTTGAGTGCTTGCTCT+TGG | - | chr4_4:60976173-60976192 | None:intergenic | 50.0% | |
| GGGAACTAACCACTCTCACT+TGG | - | chr4_4:60976265-60976284 | None:intergenic | 50.0% | |
| CGCGCAGAATCGATCAAACT+TGG | + | chr4_4:60976367-60976386 | Msa0692420:intron | 50.0% | |
| ! | AGCCTTATCATCACGTCGCA+AGG | + | chr4_4:60976636-60976655 | Msa0692420:CDS | 50.0% |
| ATCATCACGTCGCAAGGTTC+AGG | + | chr4_4:60976642-60976661 | Msa0692420:CDS | 50.0% | |
| ACAGCGTCAAGTTCCGTTGG+TGG | + | chr4_4:60974584-60974603 | Msa0692420:CDS | 55.0% | |
| TTCACCTTCCTCGCCACCAA+CGG | - | chr4_4:60974600-60974619 | None:intergenic | 55.0% | |
| TGGTCAATTACGTGCGTGGC+TGG | + | chr4_4:60974761-60974780 | Msa0692420:CDS | 55.0% | |
| !! | ACGGCGGTGTTGGTTTACGT+CGG | + | chr4_4:60974797-60974816 | Msa0692420:CDS | 55.0% |
| CCTACACCGCGACGATACTT+AGG | - | chr4_4:60974971-60974990 | None:intergenic | 55.0% | |
| ! | CCTAAGTATCGTCGCGGTGT+AGG | + | chr4_4:60974968-60974987 | Msa0692420:intron | 55.0% |
| !! | CAGGTAGCTGACTGACTTGC+GGG | - | chr4_4:60975178-60975197 | None:intergenic | 55.0% |
| !! | CCAGGTAGCTGACTGACTTG+CGG | - | chr4_4:60975179-60975198 | None:intergenic | 55.0% |
| GTTGAGTCATGAGGGGAGTC+CGG | + | chr4_4:60976130-60976149 | Msa0692420:intron | 55.0% | |
| ACTTGACGCTGTCATGGGCG+AGG | - | chr4_4:60974576-60974595 | None:intergenic | 60.0% | |
| !! | GTCAAGTTCCGTTGGTGGCG+AGG | + | chr4_4:60974589-60974608 | Msa0692420:CDS | 60.0% |
| !! | AGTTCCGTTGGTGGCGAGGA+AGG | + | chr4_4:60974593-60974612 | Msa0692420:CDS | 60.0% |
| GGCTGCAACGCGGTTGGATT+GGG | + | chr4_4:60974631-60974650 | Msa0692420:CDS | 60.0% | |
| GCGGATGGACGCTATGAGAG+TGG | + | chr4_4:60974682-60974701 | Msa0692420:CDS | 60.0% | |
| !!! | CAATGTGTGCGGGGGCGTTT+TGG | + | chr4_4:60974741-60974760 | Msa0692420:CDS | 60.0% |
| GGCTGGAGCTGTAGCTGTGA+CGG | + | chr4_4:60974778-60974797 | Msa0692420:CDS | 60.0% | |
| TGGAGCTGTAGCTGTGACGG+CGG | + | chr4_4:60974781-60974800 | Msa0692420:CDS | 60.0% | |
| TGTAGCTGTGACGGCGGTGT+TGG | + | chr4_4:60974787-60974806 | Msa0692420:CDS | 60.0% | |
| !! | CGGCGGTGTTGGTTTACGTC+GGG | + | chr4_4:60974798-60974817 | Msa0692420:CDS | 60.0% |
| !! | TCGGGATTCAAAGGCGTCGC+CGG | + | chr4_4:60974816-60974835 | Msa0692420:CDS | 60.0% |
| !! | GATTCAAAGGCGTCGCCGGA+AGG | + | chr4_4:60974820-60974839 | Msa0692420:CDS | 60.0% |
| CCGCAAGTCAGTCAGCTACC+TGG | + | chr4_4:60975176-60975195 | Msa0692420:intron | 60.0% | |
| AGGAAGGTGAAGCCCCGACG+CGG | + | chr4_4:60974609-60974628 | Msa0692420:CDS | 65.0% | |
| GGGCTGCAACGCGGTTGGAT+TGG | + | chr4_4:60974630-60974649 | Msa0692420:CDS | 65.0% | |
| !! | TCAAAGGCGTCGCCGGAAGG+TGG | + | chr4_4:60974823-60974842 | Msa0692420:CDS | 65.0% |
| TCGTCGCGGTGTAGGGGCTT+TGG | + | chr4_4:60974976-60974995 | Msa0692420:intron | 65.0% | |
| CGTCGCGGTGTAGGGGCTTT+GGG | + | chr4_4:60974977-60974996 | Msa0692420:intron | 65.0% | |
| GGAAGGTGAAGCCCCGACGC+GGG | + | chr4_4:60974610-60974629 | Msa0692420:CDS | 70.0% | |
| AACCGCGTTGCAGCCCGCGT+CGG | - | chr4_4:60974626-60974645 | None:intergenic | 70.0% | |
| ! | AGGCGTCGCCGGAAGGTGGA+CGG | + | chr4_4:60974827-60974846 | Msa0692420:CDS | 70.0% |
| ACCGCGTTGCAGCCCGCGTC+GGG | - | chr4_4:60974625-60974644 | None:intergenic | 75.0% | |
| ! | GACGCGGGCTGCAACGCGGT+TGG | + | chr4_4:60974625-60974644 | Msa0692420:CDS | 75.0% |
| ! | CCGCGTTGCAGCCCGCGTCG+GGG | - | chr4_4:60974624-60974643 | None:intergenic | 80.0% |
| !! | CCCCGACGCGGGCTGCAACG+CGG | + | chr4_4:60974621-60974640 | Msa0692420:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60974375 | 60976857 | 60974375 | ID=Msa0692420;Name=Msa0692420 |
| chr4_4 | mRNA | 60974375 | 60976857 | 60974375 | ID=Msa0692420-mRNA-1;Parent=Msa0692420;Name=Msa0692420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=26|1|1|1|1|1|2|173|189 |
| chr4_4 | exon | 60974375 | 60974880 | 60974375 | ID=Msa0692420-mRNA-1:exon:16738;Parent=Msa0692420-mRNA-1 |
| chr4_4 | exon | 60976595 | 60976857 | 60976595 | ID=Msa0692420-mRNA-1:exon:16739;Parent=Msa0692420-mRNA-1 |
| chr4_4 | five_prime_UTR | 60974375 | 60974400 | 60974375 | ID=Msa0692420-mRNA-1:five_prime_utr;Parent=Msa0692420-mRNA-1 |
| chr4_4 | CDS | 60974401 | 60974880 | 60974401 | ID=Msa0692420-mRNA-1:cds;Parent=Msa0692420-mRNA-1 |
| chr4_4 | CDS | 60976595 | 60976684 | 60976595 | ID=Msa0692420-mRNA-1:cds;Parent=Msa0692420-mRNA-1 |
| chr4_4 | three_prime_UTR | 60976685 | 60976857 | 60976685 | ID=Msa0692420-mRNA-1:three_prime_utr;Parent=Msa0692420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
