AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0848380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848380 MtrunA17_Chr5g0409451 95.098 204 9 1 1 204 1 203 7.07e-143 396
Msa0848380 MtrunA17_Chr6g0469701 42.222 90 52 0 106 195 87 176 3.26e-20 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848380 AT4G19100.1 65.089 169 59 0 35 203 45 213 2.71e-64 198
Msa0848380 AT4G19100.2 68.667 150 47 0 54 203 1 150 5.68e-59 182
Msa0848380 AT5G52780.1 43.333 90 51 0 106 195 76 165 2.94e-19 81.3

Find 52 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCCCTTTGGACCCTTTA+AGG 0.095561 5_4:+32812169 None:intergenic
AACAAAAGACCAACACTTAA+TGG 0.213710 5_4:+32811966 None:intergenic
AAAAGGGACCCTTCTCTTAA+TGG 0.223828 5_4:+32811807 None:intergenic
TGAAAATTGATGTGCCAAAT+TGG 0.226664 5_4:-32811911 Msa0848380:CDS
ACCTATACAAGCAACCTTAA+AGG 0.252062 5_4:-32812183 Msa0848380:CDS
ACAAGAAATGGAACCCAATT+TGG 0.284797 5_4:+32811897 None:intergenic
TTAAAGGGTCCAAAGGGATT+TGG 0.345555 5_4:-32812167 Msa0848380:CDS
AGTGAGAGTGAGATAATAAT+AGG 0.347057 5_4:+32812612 None:intergenic
TGGGATTGTTTCTGCTAGTT+GGG 0.348842 5_4:-32811832 Msa0848380:CDS
ATTAAGAGAAGGGTCCCTTT+TGG 0.356801 5_4:-32811805 Msa0848380:CDS
CCCTTTAAGGTTGCTTGTAT+AGG 0.369416 5_4:+32812182 None:intergenic
ATTATGAACTGCAGCATGTT+AGG 0.374937 5_4:-32812286 Msa0848380:intron
ATGGGATTGTTTCTGCTAGT+TGG 0.381471 5_4:-32811833 Msa0848380:CDS
TTAACTAATATAATCAAGTA+TGG 0.384790 5_4:+32811694 None:intergenic
ATTCTGTTTGTCACTACTTC+AGG 0.385394 5_4:+32812020 None:intergenic
TTAGTTAATCCATTTGTAGA+AGG 0.394092 5_4:-32811679 Msa0848380:three_prime_UTR
CCTATACAAGCAACCTTAAA+GGG 0.403014 5_4:-32812182 Msa0848380:CDS
ATGATGTTGGATTTAGACTT+TGG 0.404235 5_4:-32811613 Msa0848380:three_prime_UTR
TCTCACTCTCACTATTGTAC+TGG 0.405307 5_4:-32812602 Msa0848380:five_prime_UTR
AAGCTGATTCCTTCTACAAA+TGG 0.408001 5_4:+32811670 None:intergenic
AAGAAGAAAGACACAAGAAA+TGG 0.410807 5_4:+32811885 None:intergenic
GGGGAAGGTCCAAATCCCTT+TGG 0.413915 5_4:+32812158 None:intergenic
GTAGAATGGCATTGTCTGTT+GGG 0.421677 5_4:-32811992 Msa0848380:CDS
GGACTGAAGCTCAAAAGAAT+TGG 0.428750 5_4:-32811779 Msa0848380:CDS
GAAAATTGATGTGCCAAATT+GGG 0.437713 5_4:-32811910 Msa0848380:CDS
AATAGAGAAATGAGACTTGT+TGG 0.448276 5_4:+32812241 None:intergenic
GAGCTTCAGTCCATCCCAAA+AGG 0.467198 5_4:+32811790 None:intergenic
CTCACTCTCACTATTGTACT+GGG 0.467603 5_4:-32812601 Msa0848380:five_prime_UTR
GAAGAAGATAGAAGAGAGCA+AGG 0.472324 5_4:-32812050 Msa0848380:CDS
ATAGGTGGCTCGAGAGGATA+AGG 0.473809 5_4:+32812630 None:intergenic
CATGGTATGATATGTGTTGA+TGG 0.475069 5_4:+32812534 None:intergenic
GTAGTGACAAACAGAATGAT+AGG 0.478411 5_4:-32812014 Msa0848380:CDS
ACTTAGAGGTGGATCTCAAA+AGG 0.491936 5_4:-32811739 Msa0848380:CDS
CAATCCGCAATTTCTTCACA+AGG 0.492043 5_4:-32812482 Msa0848380:intron
GTTGGGATTCCATTAAGTGT+TGG 0.507152 5_4:-32811975 Msa0848380:CDS
AAACAGAATGATAGGTAGAA+TGG 0.509942 5_4:-32812006 Msa0848380:CDS
GGTAGAATGGCATTGTCTGT+TGG 0.525608 5_4:-32811993 Msa0848380:CDS
AGCTTCAGTCCATCCCAAAA+GGG 0.534187 5_4:+32811791 None:intergenic
TTGCGGATTGAGAATTGTAG+AGG 0.535900 5_4:+32812495 None:intergenic
GCAACCTTAAAGGGTCCAAA+GGG 0.543532 5_4:-32812173 Msa0848380:CDS
AAAGTCTAAATCCAACATCA+TGG 0.545422 5_4:+32811615 None:intergenic
GATGAAGATTACTACATAAG+TGG 0.551952 5_4:+32812556 None:intergenic
GTTGGGATCCATTAAGAGAA+GGG 0.567800 5_4:-32811815 Msa0848380:CDS
AGCAACCTTAAAGGGTCCAA+AGG 0.572031 5_4:-32812174 Msa0848380:CDS
GGGAGTTGTAGTAGTCATCA+TGG 0.576576 5_4:+32812516 None:intergenic
GGAACCTTGTGAAGAAATTG+CGG 0.589448 5_4:+32812478 None:intergenic
AGTTGGGATCCATTAAGAGA+AGG 0.593997 5_4:-32811816 Msa0848380:CDS
TGCGGATTGAGAATTGTAGA+GGG 0.597653 5_4:+32812496 None:intergenic
TCGAGAGGATAAGGTTGTGA+AGG 0.609913 5_4:+32812639 None:intergenic
ATAATAATAGGTGGCTCGAG+AGG 0.641398 5_4:+32812624 None:intergenic
TGAGAGAAGTGAAACTGTGA+TGG 0.647990 5_4:+32812212 None:intergenic
GAGAGTGAGATAATAATAGG+TGG 0.664025 5_4:+32812615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_4:32812643-32812662 None:intergenic 10.0%
!!! CATTTTATTAAAAATAATGT+TGG - chr5_4:32812646-32812665 Msa0848380:five_prime_UTR 10.0%
!!! TTATTTTTAATAAAATGCAA+TGG + chr5_4:32812643-32812662 None:intergenic 10.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_4:32811756-32811775 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_4:32811767-32811786 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_4:32812259-32812278 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_4:32812259-32812278 Msa0848380:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_4:32812504-32812523 None:intergenic 15.0%
!! TCTTAAAATTGGTAAAATAA+CGG + chr5_4:32811756-32811775 None:intergenic 15.0%
!! GAAAACATAAATCTTAAAAT+TGG + chr5_4:32811767-32811786 None:intergenic 15.0%
!!! ACTTTAAGATAGTAAAAAAA+TGG + chr5_4:32812259-32812278 None:intergenic 15.0%
!!! TTTTTTTACTATCTTAAAGT+TGG - chr5_4:32812259-32812278 Msa0848380:CDS 15.0%
!! TTAACTAATATAATCAAGTA+TGG + chr5_4:32812504-32812523 None:intergenic 15.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_4:32811755-32811774 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_4:32811796-32811815 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_4:32811808-32811827 Msa0848380:CDS 20.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_4:32812060-32812079 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_4:32812061-32812080 None:intergenic 20.0%
!! CTTAAAATTGGTAAAATAAC+GGG + chr5_4:32811755-32811774 None:intergenic 20.0%
!!! TTTTTCTATGCTTAAAAATG+AGG + chr5_4:32811796-32811815 None:intergenic 20.0%
!! TAGAAAAATATCAACAACTT+AGG - chr5_4:32811808-32811827 Msa0848380:CDS 20.0%
!!! TTGTCTTGTTTTTTTTCTTT+GGG + chr5_4:32812060-32812079 None:intergenic 20.0%
!!! ATTGTCTTGTTTTTTTTCTT+TGG + chr5_4:32812061-32812080 None:intergenic 20.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_4:32811741-32811760 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_4:32812059-32812078 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_4:32812317-32812336 Msa0848380:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_4:32812516-32812535 Msa0848380:CDS 25.0%
!! AATAACGGGAAATAAATAGA+AGG + chr5_4:32811741-32811760 None:intergenic 25.0%
!!! TGTCTTGTTTTTTTTCTTTG+GGG + chr5_4:32812059-32812078 None:intergenic 25.0%
!!! TTGTGTCTTTCTTCTTTTTT+GGG - chr5_4:32812317-32812336 Msa0848380:intron 25.0%
! TTAGTTAATCCATTTGTAGA+AGG - chr5_4:32812516-32812535 Msa0848380:CDS 25.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_4:32811586-32811605 None:intergenic 30.0%
GATGAAGATTACTACATAAG+TGG + chr5_4:32811642-32811661 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_4:32811815-32811834 Msa0848380:CDS 30.0%
AATAGAGAAATGAGACTTGT+TGG + chr5_4:32811957-32811976 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTTGGGGA+AGG + chr5_4:32812055-32812074 None:intergenic 30.0%
!!! CTTGTTGTTTGTTCTTTTTG+AGG + chr5_4:32812090-32812109 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_4:32812189-32812208 Msa0848380:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_4:32812232-32812251 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_4:32812284-32812303 Msa0848380:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_4:32812285-32812304 Msa0848380:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_4:32812313-32812332 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_4:32812316-32812335 Msa0848380:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_4:32812428-32812447 Msa0848380:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_4:32812442-32812461 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_4:32812442-32812461 Msa0848380:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_4:32812569-32812588 Msa0848380:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_4:32812583-32812602 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_4:32812582-32812601 Msa0848380:five_prime_UTR 30.0%
AGTGAGAGTGAGATAATAAT+AGG + chr5_4:32811586-32811605 None:intergenic 30.0%
GATGAAGATTACTACATAAG+TGG + chr5_4:32811642-32811661 None:intergenic 30.0%
ATATCAACAACTTAGGAACT+AGG - chr5_4:32811815-32811834 Msa0848380:CDS 30.0%
AATAGAGAAATGAGACTTGT+TGG + chr5_4:32811957-32811976 None:intergenic 30.0%
!!! TTGTTTTTTTTCTTTGGGGA+AGG + chr5_4:32812055-32812074 None:intergenic 30.0%
!!! CTTGTTGTTTGTTCTTTTTG+AGG + chr5_4:32812090-32812109 None:intergenic 30.0%
AAACAGAATGATAGGTAGAA+TGG - chr5_4:32812189-32812208 Msa0848380:CDS 30.0%
AACAAAAGACCAACACTTAA+TGG + chr5_4:32812232-32812251 None:intergenic 30.0%
TGAAAATTGATGTGCCAAAT+TGG - chr5_4:32812284-32812303 Msa0848380:intron 30.0%
GAAAATTGATGTGCCAAATT+GGG - chr5_4:32812285-32812304 Msa0848380:intron 30.0%
AAGAAGAAAGACACAAGAAA+TGG + chr5_4:32812313-32812332 None:intergenic 30.0%
!!! CTTGTGTCTTTCTTCTTTTT+TGG - chr5_4:32812316-32812335 Msa0848380:intron 30.0%
!!! AAAAGAATTGGCCTGTTTTT+TGG - chr5_4:32812428-32812447 Msa0848380:intron 30.0%
CTAAGTGATTTCCAAAAAAC+AGG + chr5_4:32812442-32812461 None:intergenic 30.0%
!!! GTTTTTTGGAAATCACTTAG+AGG - chr5_4:32812442-32812461 Msa0848380:intron 30.0%
! TCAATTTTAGACCATGATGT+TGG - chr5_4:32812569-32812588 Msa0848380:five_prime_UTR 30.0%
AAAGTCTAAATCCAACATCA+TGG + chr5_4:32812583-32812602 None:intergenic 30.0%
ATGATGTTGGATTTAGACTT+TGG - chr5_4:32812582-32812601 Msa0848380:five_prime_UTR 30.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_4:32811583-32811602 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_4:32811664-32811683 None:intergenic 35.0%
ATTATGAACTGCAGCATGTT+AGG - chr5_4:32811909-32811928 Msa0848380:CDS 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_4:32812012-32812031 Msa0848380:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_4:32812013-32812032 Msa0848380:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_4:32812178-32812197 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_4:32812181-32812200 Msa0848380:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_4:32812301-32812320 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_4:32812331-32812350 Msa0848380:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_4:32812344-32812363 Msa0848380:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_4:32812445-32812464 Msa0848380:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_4:32812528-32812547 None:intergenic 35.0%
GAGAGTGAGATAATAATAGG+TGG + chr5_4:32811583-32811602 None:intergenic 35.0%
CATGGTATGATATGTGTTGA+TGG + chr5_4:32811664-32811683 None:intergenic 35.0%
ATTATGAACTGCAGCATGTT+AGG - chr5_4:32811909-32811928 Msa0848380:CDS 35.0%
ACCTATACAAGCAACCTTAA+AGG - chr5_4:32812012-32812031 Msa0848380:CDS 35.0%
CCTATACAAGCAACCTTAAA+GGG - chr5_4:32812013-32812032 Msa0848380:CDS 35.0%
ATTCTGTTTGTCACTACTTC+AGG + chr5_4:32812178-32812197 None:intergenic 35.0%
GTAGTGACAAACAGAATGAT+AGG - chr5_4:32812181-32812200 Msa0848380:CDS 35.0%
ACAAGAAATGGAACCCAATT+TGG + chr5_4:32812301-32812320 None:intergenic 35.0%
!!! TTTTTTGGGTCTGCACTTTT+AGG - chr5_4:32812331-32812350 Msa0848380:intron 35.0%
!! CACTTTTAGGAGTGAGTTAT+GGG - chr5_4:32812344-32812363 Msa0848380:intron 35.0%
!! TTTTGGAAATCACTTAGAGG+TGG - chr5_4:32812445-32812464 Msa0848380:intron 35.0%
! AAGCTGATTCCTTCTACAAA+TGG + chr5_4:32812528-32812547 None:intergenic 35.0%
ATAATAATAGGTGGCTCGAG+AGG + chr5_4:32811574-32811593 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+TGG - chr5_4:32811593-32811612 Msa0848380:three_prime_UTR 40.0%
CTCACTCTCACTATTGTACT+GGG - chr5_4:32811594-32811613 Msa0848380:three_prime_UTR 40.0%
! TGCGGATTGAGAATTGTAGA+GGG + chr5_4:32811702-32811721 None:intergenic 40.0%
! TTGCGGATTGAGAATTGTAG+AGG + chr5_4:32811703-32811722 None:intergenic 40.0%
CAATCCGCAATTTCTTCACA+AGG - chr5_4:32811713-32811732 Msa0848380:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+CGG + chr5_4:32811720-32811739 None:intergenic 40.0%
GAACTAGGATAGTACTGCAT+AGG - chr5_4:32811830-32811849 Msa0848380:CDS 40.0%
TGAGAGAAGTGAAACTGTGA+TGG + chr5_4:32811986-32812005 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_4:32812016-32812035 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_4:32812029-32812048 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_4:32812028-32812047 Msa0848380:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_4:32812145-32812164 Msa0848380:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_4:32812203-32812222 Msa0848380:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_4:32812220-32812239 Msa0848380:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_4:32812343-32812362 Msa0848380:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_4:32812362-32812381 Msa0848380:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_4:32812363-32812382 Msa0848380:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_4:32812379-32812398 Msa0848380:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_4:32812380-32812399 Msa0848380:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_4:32812391-32812410 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_4:32812390-32812409 Msa0848380:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_4:32812391-32812410 Msa0848380:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_4:32812416-32812435 Msa0848380:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_4:32812456-32812475 Msa0848380:intron 40.0%
ATAATAATAGGTGGCTCGAG+AGG + chr5_4:32811574-32811593 None:intergenic 40.0%
TCTCACTCTCACTATTGTAC+TGG - chr5_4:32811593-32811612 Msa0848380:three_prime_UTR 40.0%
CTCACTCTCACTATTGTACT+GGG - chr5_4:32811594-32811613 Msa0848380:three_prime_UTR 40.0%
! TGCGGATTGAGAATTGTAGA+GGG + chr5_4:32811702-32811721 None:intergenic 40.0%
! TTGCGGATTGAGAATTGTAG+AGG + chr5_4:32811703-32811722 None:intergenic 40.0%
CAATCCGCAATTTCTTCACA+AGG - chr5_4:32811713-32811732 Msa0848380:three_prime_UTR 40.0%
GGAACCTTGTGAAGAAATTG+CGG + chr5_4:32811720-32811739 None:intergenic 40.0%
GAACTAGGATAGTACTGCAT+AGG - chr5_4:32811830-32811849 Msa0848380:CDS 40.0%
TGAGAGAAGTGAAACTGTGA+TGG + chr5_4:32811986-32812005 None:intergenic 40.0%
!! CCCTTTAAGGTTGCTTGTAT+AGG + chr5_4:32812016-32812035 None:intergenic 40.0%
AAATCCCTTTGGACCCTTTA+AGG + chr5_4:32812029-32812048 None:intergenic 40.0%
TTAAAGGGTCCAAAGGGATT+TGG - chr5_4:32812028-32812047 Msa0848380:CDS 40.0%
GAAGAAGATAGAAGAGAGCA+AGG - chr5_4:32812145-32812164 Msa0848380:CDS 40.0%
GTAGAATGGCATTGTCTGTT+GGG - chr5_4:32812203-32812222 Msa0848380:CDS 40.0%
GTTGGGATTCCATTAAGTGT+TGG - chr5_4:32812220-32812239 Msa0848380:CDS 40.0%
!! GCACTTTTAGGAGTGAGTTA+TGG - chr5_4:32812343-32812362 Msa0848380:intron 40.0%
!! ATGGGATTGTTTCTGCTAGT+TGG - chr5_4:32812362-32812381 Msa0848380:intron 40.0%
!! TGGGATTGTTTCTGCTAGTT+GGG - chr5_4:32812363-32812382 Msa0848380:intron 40.0%
AGTTGGGATCCATTAAGAGA+AGG - chr5_4:32812379-32812398 Msa0848380:intron 40.0%
GTTGGGATCCATTAAGAGAA+GGG - chr5_4:32812380-32812399 Msa0848380:intron 40.0%
AAAAGGGACCCTTCTCTTAA+TGG + chr5_4:32812391-32812410 None:intergenic 40.0%
! ATTAAGAGAAGGGTCCCTTT+TGG - chr5_4:32812390-32812409 Msa0848380:intron 40.0%
! TTAAGAGAAGGGTCCCTTTT+GGG - chr5_4:32812391-32812410 Msa0848380:intron 40.0%
GGACTGAAGCTCAAAAGAAT+TGG - chr5_4:32812416-32812435 Msa0848380:intron 40.0%
ACTTAGAGGTGGATCTCAAA+AGG - chr5_4:32812456-32812475 Msa0848380:intron 40.0%
TCGAGAGGATAAGGTTGTGA+AGG + chr5_4:32811559-32811578 None:intergenic 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_4:32811682-32811701 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_4:32812021-32812040 Msa0848380:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_4:32812022-32812041 Msa0848380:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_4:32812202-32812221 Msa0848380:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_4:32812407-32812426 None:intergenic 45.0%
TCGAGAGGATAAGGTTGTGA+AGG + chr5_4:32811559-32811578 None:intergenic 45.0%
GGGAGTTGTAGTAGTCATCA+TGG + chr5_4:32811682-32811701 None:intergenic 45.0%
AGCAACCTTAAAGGGTCCAA+AGG - chr5_4:32812021-32812040 Msa0848380:CDS 45.0%
GCAACCTTAAAGGGTCCAAA+GGG - chr5_4:32812022-32812041 Msa0848380:CDS 45.0%
GGTAGAATGGCATTGTCTGT+TGG - chr5_4:32812202-32812221 Msa0848380:CDS 45.0%
AGCTTCAGTCCATCCCAAAA+GGG + chr5_4:32812407-32812426 None:intergenic 45.0%
ATAGGTGGCTCGAGAGGATA+AGG + chr5_4:32811568-32811587 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_4:32812408-32812427 None:intergenic 50.0%
ATAGGTGGCTCGAGAGGATA+AGG + chr5_4:32811568-32811587 None:intergenic 50.0%
GAGCTTCAGTCCATCCCAAA+AGG + chr5_4:32812408-32812427 None:intergenic 50.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_4:32812040-32812059 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_4:32812395-32812414 Msa0848380:intron 55.0%
GGGGAAGGTCCAAATCCCTT+TGG + chr5_4:32812040-32812059 None:intergenic 55.0%
!! GAGAAGGGTCCCTTTTGGGA+TGG - chr5_4:32812395-32812414 Msa0848380:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 32811549 32812668 32811549 ID=Msa0848380;Name=Msa0848380
chr5_4 mRNA 32811549 32812668 32811549 ID=Msa0848380-mRNA-1;Parent=Msa0848380;Name=Msa0848380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=132|1|1|1|1|1|2|185|204
chr5_4 exon 32811549 32812294 32811549 ID=Msa0848380-mRNA-1:exon:11471;Parent=Msa0848380-mRNA-1
chr5_4 exon 32812483 32812668 32812483 ID=Msa0848380-mRNA-1:exon:11470;Parent=Msa0848380-mRNA-1
chr5_4 five_prime_UTR 32812537 32812668 32812537 ID=Msa0848380-mRNA-1:five_prime_utr;Parent=Msa0848380-mRNA-1
chr5_4 CDS 32812483 32812536 32812483 ID=Msa0848380-mRNA-1:cds;Parent=Msa0848380-mRNA-1
chr5_4 CDS 32811734 32812294 32811734 ID=Msa0848380-mRNA-1:cds;Parent=Msa0848380-mRNA-1
chr5_4 three_prime_UTR 32811549 32811733 32811549 ID=Msa0848380-mRNA-1:three_prime_utr;Parent=Msa0848380-mRNA-1
Gene Sequence

>Msa0848380

ATGATGACTACTACAACTCCCTCTACAATTCTCAATCCGCAATTTCTTCACAAGCATGTTAGGCACAACAACATTTATATACTCACCAACAAGTCTCATTTCTCTATTCATAGACCATCACAGTTTCACTTCTCTCACATTGTACCTATACAAGCAACCTTAAAGGGTCCAAAGGGATTTGGACCTTCCCCAAAGAAAAAAAACAAGACAATCAAGAACCTCAAAAAGAACAAACAACAAGAAGATAATGATGAAGAAGACGATGAAGATGAAGAAGAAGAAGATAGAAGAGAGCAAGGAATCATTCCTGAAGTAGTGACAAACAGAATGATAGGTAGAATGGCATTGTCTGTTGGGATTCCATTAAGTGTTGGTCTTTTGTTCTTTCCATTTTTTTACTATCTTAAAGTTGGTTTGAAAATTGATGTGCCAAATTGGGTTCCATTTCTTGTGTCTTTCTTCTTTTTTGGGTCTGCACTTTTAGGAGTGAGTTATGGGATTGTTTCTGCTAGTTGGGATCCATTAAGAGAAGGGTCCCTTTTGGGATGGACTGAAGCTCAAAAGAATTGGCCTGTTTTTTGGAAATCACTTAGAGGTGGATCTCAAAAGGATTAG

Protein sequence

>Msa0848380

MMTTTTPSTILNPQFLHKHVRHNNIYILTNKSHFSIHRPSQFHFSHIVPIQATLKGPKGFGPSPKKKNKTIKNLKKNKQQEDNDEEDDEDEEEEDRREQGIIPEVVTNRMIGRMALSVGIPLSVGLLFFPFFYYLKVGLKIDVPNWVPFLVSFFFFGSALLGVSYGIVSASWDPLREGSLLGWTEAQKNWPVFWKSLRGGSQKD*