Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060730 | XP_003601363.2 | 95.417 | 240 | 7 | 1 | 1 | 240 | 1 | 236 | 1.95e-162 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060730 | sp|Q1PFH7|PPR89_ARATH | 72.959 | 196 | 52 | 1 | 44 | 239 | 1 | 195 | 4.46e-102 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060730 | G7J6N2 | 95.417 | 240 | 7 | 1 | 1 | 240 | 1 | 236 | 9.32e-163 | 459 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011840 | Msa0060730 | -0.801058 | 1.076895e-48 | -8.615850e-47 |
| Msa0032470 | Msa0060730 | -0.825069 | 5.730701e-54 | -8.615850e-47 |
| Msa0060730 | Msa0076290 | -0.809177 | 2.152280e-50 | -8.615850e-47 |
| Msa0060730 | Msa0160960 | -0.804579 | 2.018731e-49 | -8.615850e-47 |
| Msa0060730 | Msa0219590 | -0.804171 | 2.455470e-49 | -8.615850e-47 |
| Msa0060730 | Msa0270580 | -0.802466 | 5.536665e-49 | -8.615850e-47 |
| Msa0060730 | Msa0278580 | -0.810856 | 9.359393e-51 | -8.615850e-47 |
| Msa0060730 | Msa0287870 | -0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa0060730 | Msa0318680 | -0.833738 | 4.488617e-56 | -8.615850e-47 |
| Msa0060730 | Msa0395750 | -0.801502 | 8.736003e-49 | -8.615850e-47 |
| Msa0060730 | Msa0416510 | -0.810595 | 1.065908e-50 | -8.615850e-47 |
| Msa0060730 | Msa0470880 | -0.813775 | 2.157395e-51 | -8.615850e-47 |
| Msa0060730 | Msa0556660 | -0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0060730 | Msa0562570 | -0.800386 | 1.476508e-48 | -8.615850e-47 |
| Msa0060730 | Msa0611540 | 0.825177 | 5.402739e-54 | -8.615850e-47 |
| Msa0060730 | Msa0625700 | -0.821102 | 4.826986e-53 | -8.615850e-47 |
| Msa0060730 | Msa0673120 | -0.816638 | 4.987553e-52 | -8.615850e-47 |
| Msa0060730 | Msa0695880 | -0.819884 | 9.187405e-53 | -8.615850e-47 |
| Msa0060730 | Msa0741440 | -0.803023 | 4.247499e-49 | -8.615850e-47 |
| Msa0060730 | Msa0822500 | -0.811205 | 7.865926e-51 | -8.615850e-47 |
| Msa0060730 | Msa0858390 | -0.823521 | 1.324636e-53 | -8.615850e-47 |
| Msa0060730 | Msa0878220 | -0.846780 | 1.752057e-59 | -8.615850e-47 |
| Msa0060730 | Msa0943970 | -0.850279 | 1.882253e-60 | -8.615850e-47 |
| Msa0060730 | Msa0944020 | -0.843762 | 1.147943e-58 | -8.615850e-47 |
| Msa0060730 | Msa0965080 | -0.808730 | 2.682778e-50 | -8.615850e-47 |
| Msa0060730 | Msa0965290 | -0.822736 | 2.018941e-53 | -8.615850e-47 |
| Msa0060730 | Msa0992510 | -0.801603 | 8.330223e-49 | -8.615850e-47 |
| Msa0060730 | Msa0999680 | -0.820581 | 6.359172e-53 | -8.615850e-47 |
| Msa0060730 | Msa1140630 | -0.816097 | 6.592664e-52 | -8.615850e-47 |
| Msa0060730 | Msa1178580 | -0.807292 | 5.428686e-50 | -8.615850e-47 |
| Msa0060730 | Msa1184690 | -0.820702 | 5.964614e-53 | -8.615850e-47 |
| Msa0060730 | Msa1213890 | -0.821228 | 4.514292e-53 | -8.615850e-47 |
| Msa0060730 | Msa1213980 | -0.802309 | 5.963081e-49 | -8.615850e-47 |
| Msa0060730 | Msa1214750 | -0.801462 | 8.904399e-49 | -8.615850e-47 |
| Msa0060730 | Msa1236440 | -0.802157 | 6.409660e-49 | -8.615850e-47 |
| Msa0060730 | Msa1238600 | -0.815574 | 8.622409e-52 | -8.615850e-47 |
| Msa0060730 | Msa1271130 | -0.808717 | 2.699458e-50 | -8.615850e-47 |
| Msa0060730 | Msa1276150 | -0.812478 | 4.154630e-51 | -8.615850e-47 |
| Msa0060730 | Msa1277670 | -0.806007 | 1.013750e-49 | -8.615850e-47 |
| Msa0060730 | Msa1297050 | 0.822356 | 2.474837e-53 | -8.615850e-47 |
| Msa0060730 | Msa1300700 | -0.801083 | 1.064288e-48 | -8.615850e-47 |
| Msa0060730 | Msa1325410 | 0.826631 | 2.440416e-54 | -8.615850e-47 |
| Msa0060730 | Msa1346840 | -0.844672 | 6.537694e-59 | -8.615850e-47 |
| Msa0060730 | Msa1363820 | 0.813867 | 2.059040e-51 | -8.615850e-47 |
| Msa0060730 | Msa1401990 | -0.815979 | 7.001895e-52 | -8.615850e-47 |
| Msa0060730 | Msa1407760 | -0.809471 | 1.861768e-50 | -8.615850e-47 |
| Msa0060730 | Msa1410550 | -0.805035 | 1.621058e-49 | -8.615850e-47 |
| Msa0060730 | Msa1419690 | -0.823992 | 1.027311e-53 | -8.615850e-47 |
| Msa0060730 | Msa1437730 | -0.830317 | 3.143373e-55 | -8.615850e-47 |
| Msa0060730 | Msa1442920 | -0.831670 | 1.463600e-55 | -8.615850e-47 |
| Msa0060730 | Msa1450440 | -0.816985 | 4.168656e-52 | -8.615850e-47 |
| Msa0060730 | Msa1452710 | -0.808661 | 2.775791e-50 | -8.615850e-47 |
| Msa0060730 | Msa1458680 | -0.804821 | 1.797334e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060730 | MtrunA17_Chr3g0119081 | 95.417 | 240 | 7 | 1 | 1 | 240 | 1 | 236 | 1.80e-166 | 459 |
| Msa0060730 | MtrunA17_Chr1g0160481 | 94.167 | 240 | 6 | 1 | 1 | 240 | 1 | 232 | 5.26e-163 | 450 |
| Msa0060730 | MtrunA17_Chr4g0032231 | 43.111 | 225 | 123 | 2 | 6 | 225 | 34 | 258 | 1.51e-68 | 211 |
| Msa0060730 | MtrunA17_Chr3g0119151 | 90.909 | 99 | 5 | 1 | 1 | 99 | 1 | 95 | 6.16e-48 | 153 |
| Msa0060730 | MtrunA17_Chr3g0119161 | 92.308 | 52 | 3 | 1 | 92 | 143 | 7 | 57 | 9.79e-27 | 98.2 |
| Msa0060730 | MtrunA17_Chr2g0329741 | 25.926 | 189 | 130 | 3 | 10 | 195 | 22 | 203 | 7.42e-14 | 68.9 |
| Msa0060730 | MtrunA17_Chr4g0059671 | 23.370 | 184 | 134 | 2 | 43 | 219 | 65 | 248 | 4.10e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060730 | AT1G62350.2 | 69.231 | 234 | 70 | 2 | 6 | 239 | 20 | 251 | 7.02e-115 | 329 |
| Msa0060730 | AT1G62350.1 | 72.959 | 196 | 52 | 1 | 44 | 239 | 1 | 195 | 4.53e-103 | 297 |
| Msa0060730 | AT1G62350.3 | 71.631 | 141 | 39 | 1 | 99 | 239 | 3 | 142 | 4.98e-72 | 216 |
| Msa0060730 | AT3G46870.1 | 44.444 | 207 | 112 | 1 | 19 | 225 | 51 | 254 | 5.92e-66 | 205 |
| Msa0060730 | AT3G46870.2 | 42.009 | 219 | 112 | 2 | 19 | 225 | 51 | 266 | 1.66e-62 | 197 |
| Msa0060730 | AT5G09315.1 | 32.353 | 136 | 91 | 1 | 66 | 200 | 92 | 227 | 9.35e-17 | 77.4 |
Find 83 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCTTAATTCGGGATA+TGG | 0.132808 | 1_2:-18580536 | None:intergenic |
| AGGATCATTACTGGGATTAA+TGG | 0.287486 | 1_2:-18580982 | None:intergenic |
| CTTCTTCTTCTTATTGTTCC+CGG | 0.298108 | 1_2:+18576788 | Msa0060730:CDS |
| TTGGAGTCTCTTGAGCTCTT+TGG | 0.322726 | 1_2:-18576893 | None:intergenic |
| TATTGTTCCCGGTTCATTAC+CGG | 0.323723 | 1_2:+18576799 | Msa0060730:CDS |
| TTATACACCTCCTCACATTC+AGG | 0.334852 | 1_2:+18580689 | Msa0060730:three_prime_UTR |
| CAGTGCAATTCGCAGCATTA+AGG | 0.343320 | 1_2:-18576734 | None:intergenic |
| TCTTTCGCCTCCATATTGAT+AGG | 0.350181 | 1_2:-18576840 | None:intergenic |
| GAAAGACATTGTCCTGTCTA+TGG | 0.370025 | 1_2:-18577002 | None:intergenic |
| CAAAACCAAGCCTATCAATA+TGG | 0.370657 | 1_2:+18576830 | Msa0060730:CDS |
| ATATTGTACGGAAAGAAATA+TGG | 0.371606 | 1_2:+18580255 | Msa0060730:CDS |
| TCTCTCTTAATTCGGGATAT+GGG | 0.392257 | 1_2:-18580535 | None:intergenic |
| TTGTTCCCGCTCCGAATGTC+TGG | 0.396295 | 1_2:-18580713 | None:intergenic |
| CGCCTCCATATTGATAGGCT+TGG | 0.402745 | 1_2:-18576835 | None:intergenic |
| TTCCCGGTTCATTACCGGTT+CGG | 0.409083 | 1_2:+18576804 | Msa0060730:CDS |
| TGATAAGAGAGGATCATTAC+TGG | 0.418314 | 1_2:-18580991 | None:intergenic |
| GAGTGGAATAAGAGAAATAT+TGG | 0.421056 | 1_2:+18580740 | Msa0060730:three_prime_UTR |
| AAGCCGAACCGGTAATGAAC+CGG | 0.423686 | 1_2:-18576807 | None:intergenic |
| CTATTTGATCAGCATACGTT+TGG | 0.423785 | 1_2:+18580386 | Msa0060730:CDS |
| TGATGCTTGCAAGAAACAAA+AGG | 0.434616 | 1_2:+18580315 | Msa0060730:CDS |
| GGTAACGACAGAGGAGGCTC+AGG | 0.443729 | 1_2:-18580485 | None:intergenic |
| CTAAACGAACCGGGTCGGTT+TGG | 0.446992 | 1_2:-18576912 | None:intergenic |
| ATTAGAGCCTATCTTGATAG+TGG | 0.449484 | 1_2:+18580416 | Msa0060730:CDS |
| GGGTCATAGATGATCATATC+CGG | 0.449797 | 1_2:-18580587 | None:intergenic |
| TGGAGGCGAAAGAAAGAGTT+GGG | 0.450000 | 1_2:+18576850 | Msa0060730:CDS |
| GACATTTATTGAGTCAGTGT+TGG | 0.457313 | 1_2:+18580662 | Msa0060730:exon |
| AAACATTGGACCGGACAAAC+CGG | 0.460135 | 1_2:-18576936 | None:intergenic |
| CTCAGTTGTACGATATTGTA+CGG | 0.461048 | 1_2:+18580243 | Msa0060730:intron |
| ACAAACCGGTCTAAACGAAC+CGG | 0.465843 | 1_2:-18576922 | None:intergenic |
| TTCGTTTAGACCGGTTTGTC+CGG | 0.470194 | 1_2:+18576926 | Msa0060730:CDS |
| CAATGTCTTTCTCTCTATGA+AGG | 0.475784 | 1_2:+18577014 | Msa0060730:CDS |
| CACATTCAGGACCAGACATT+CGG | 0.475852 | 1_2:+18580702 | Msa0060730:three_prime_UTR |
| CATTTCTTCATATATGTCCA+TGG | 0.476537 | 1_2:-18580453 | None:intergenic |
| GGGCATACCACTATCAAGAT+AGG | 0.480389 | 1_2:-18580423 | None:intergenic |
| TCCCTATAAAAGAACATGTC+CGG | 0.491124 | 1_2:-18580284 | None:intergenic |
| TGGATGAAACAAAGAGGGTG+TGG | 0.495129 | 1_2:+18580339 | Msa0060730:CDS |
| TCTCTTTGAGTTCCATAGAC+AGG | 0.495141 | 1_2:+18576990 | Msa0060730:CDS |
| TGGTATGCCCTCAGAGGCCA+TGG | 0.504388 | 1_2:+18580436 | Msa0060730:CDS |
| TTTGAGCAAGCGAGAAACAT+TGG | 0.521464 | 1_2:-18576950 | None:intergenic |
| TTACTCGAAATTGCAGCTAC+CGG | 0.524403 | 1_2:-18580935 | None:intergenic |
| GGATGAAACAAAGAGGGTGT+GGG | 0.531804 | 1_2:+18580340 | Msa0060730:CDS |
| TACTCGAAATTGCAGCTACC+GGG | 0.534041 | 1_2:-18580934 | None:intergenic |
| CCGACCCGGTTCGTTTAGAC+CGG | 0.541033 | 1_2:+18576917 | Msa0060730:CDS |
| TGGGATGATTTGAAAGGAGA+GGG | 0.541730 | 1_2:+18580359 | Msa0060730:CDS |
| TGATCGTCGAACAAATCCTC+AGG | 0.555262 | 1_2:-18580611 | None:intergenic |
| ATATATGTCCATGGCCTCTG+AGG | 0.556170 | 1_2:-18580444 | None:intergenic |
| AAGAAAGAGTTGGGTAAAGA+AGG | 0.558193 | 1_2:+18576859 | Msa0060730:CDS |
| CAGGACCAGACATTCGGAGC+GGG | 0.560309 | 1_2:+18580708 | Msa0060730:three_prime_UTR |
| ATGGAGGCGAAAGAAAGAGT+TGG | 0.574360 | 1_2:+18576849 | Msa0060730:CDS |
| GATGCTTGCAAGAAACAAAA+GGG | 0.580644 | 1_2:+18580316 | Msa0060730:CDS |
| AGCCGAACCGGTAATGAACC+GGG | 0.581163 | 1_2:-18576806 | None:intergenic |
| GAAAGAAATATGGTATCGGC+CGG | 0.588511 | 1_2:+18580265 | Msa0060730:CDS |
| TACGGAAAGAAATATGGTAT+CGG | 0.597931 | 1_2:+18580261 | Msa0060730:CDS |
| GATAAGAGAGGATCATTACT+GGG | 0.597943 | 1_2:-18580990 | None:intergenic |
| CAAGAGACTCCAAACCGACC+CGG | 0.607394 | 1_2:+18576903 | Msa0060730:CDS |
| GGTCATAGATGATCATATCC+GGG | 0.610854 | 1_2:-18580586 | None:intergenic |
| TATATGTCCATGGCCTCTGA+GGG | 0.617384 | 1_2:-18580443 | None:intergenic |
| GTGGGATGATTTGAAAGGAG+AGG | 0.627667 | 1_2:+18580358 | Msa0060730:CDS |
| AGTGCAGATAATAGTGTCGG+TGG | 0.630283 | 1_2:-18580823 | None:intergenic |
| AACCAAGCCTATCAATATGG+AGG | 0.635240 | 1_2:+18576833 | Msa0060730:CDS |
| AGGGTGTGGGATGATTTGAA+AGG | 0.639517 | 1_2:+18580353 | Msa0060730:CDS |
| CAAACCGGTCTAAACGAACC+GGG | 0.641334 | 1_2:-18576921 | None:intergenic |
| CAAAGTGCAGATAATAGTGT+CGG | 0.643730 | 1_2:-18580826 | None:intergenic |
| ATAAAGTACAATGATAAGAG+AGG | 0.645176 | 1_2:-18581002 | None:intergenic |
| TCGTCGAACAAATCCTCAGG+AGG | 0.645285 | 1_2:-18580608 | None:intergenic |
| GCAAGCGAGAAACATTGGAC+CGG | 0.648441 | 1_2:-18576945 | None:intergenic |
| GGAGCGGGAACAAATATGAG+TGG | 0.649849 | 1_2:+18580723 | Msa0060730:three_prime_UTR |
| AAAGAGAACAGAAACAAGGT+CGG | 0.661405 | 1_2:-18576974 | None:intergenic |
| GTCTGGTCCTGAATGTGAGG+AGG | 0.663501 | 1_2:-18580696 | None:intergenic |
| CCGGTCTAAACGAACCGGGT+CGG | 0.668722 | 1_2:-18576917 | None:intergenic |
| TGACATGCAATGCTGAGACC+CGG | 0.671109 | 1_2:+18580916 | Msa0060730:three_prime_UTR |
| CGTCGAACAAATCCTCAGGA+GGG | 0.674744 | 1_2:-18580607 | None:intergenic |
| AAAGGGTGGATGAAACAAAG+AGG | 0.675808 | 1_2:+18580333 | Msa0060730:CDS |
| TGATAGTGGTATGCCCTCAG+AGG | 0.680388 | 1_2:+18580430 | Msa0060730:CDS |
| AAGGGTGGATGAAACAAAGA+GGG | 0.682544 | 1_2:+18580334 | Msa0060730:CDS |
| CGACGATCATGAGAAGCACG+AGG | 0.685336 | 1_2:+18580625 | Msa0060730:CDS |
| GCTTGCAAGAAACAAAAGGG+TGG | 0.691309 | 1_2:+18580319 | Msa0060730:CDS |
| AATGTCTGGTCCTGAATGTG+AGG | 0.691390 | 1_2:-18580699 | None:intergenic |
| CGAAAAGGTAACGACAGAGG+AGG | 0.692951 | 1_2:-18580491 | None:intergenic |
| ACACGAAAAGGTAACGACAG+AGG | 0.696499 | 1_2:-18580494 | None:intergenic |
| GATCATCTATGACCCTCCTG+AGG | 0.697231 | 1_2:+18580595 | Msa0060730:CDS |
| ACTCAAAGAGAACAGAAACA+AGG | 0.713169 | 1_2:-18576978 | None:intergenic |
| TCAGGACCAGACATTCGGAG+CGG | 0.723476 | 1_2:+18580707 | Msa0060730:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTTAGAGTATATT+TGG | + | chr1_2:18577096-18577115 | Msa0060730:intron | 10.0% |
| !! | ATGTATAATTTATGAATATA+GGG | - | chr1_2:18579702-18579721 | None:intergenic | 10.0% |
| !! | GATAATTTCAGAAATTAAAT+TGG | + | chr1_2:18577760-18577779 | Msa0060730:intron | 15.0% |
| !!! | AAGAAAAAGTAAAATCTTTT+TGG | + | chr1_2:18577970-18577989 | Msa0060730:intron | 15.0% |
| !!! | AGAAAAAGTAAAATCTTTTT+GGG | + | chr1_2:18577971-18577990 | Msa0060730:intron | 15.0% |
| !! | TTGGTTTAAAAAAAAAACAA+GGG | + | chr1_2:18578640-18578659 | Msa0060730:intron | 15.0% |
| !! | TTGTTAAACAAAAAAATAAC+AGG | - | chr1_2:18578763-18578782 | None:intergenic | 15.0% |
| !! | AAACAAAAACAACAAAAATA+AGG | - | chr1_2:18578939-18578958 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTATGAAATAG+CGG | + | chr1_2:18578950-18578969 | Msa0060730:intron | 15.0% |
| !! | CATGTATAATTTATGAATAT+AGG | - | chr1_2:18579703-18579722 | None:intergenic | 15.0% |
| !! | CTATATTCATAAATTATACA+TGG | + | chr1_2:18579701-18579720 | Msa0060730:intron | 15.0% |
| !!! | AATTTTTTCATATATACTCT+TGG | + | chr1_2:18579971-18579990 | Msa0060730:intron | 15.0% |
| !!! | ATTTTTTCATATATACTCTT+GGG | + | chr1_2:18579972-18579991 | Msa0060730:intron | 15.0% |
| !!! | TTTTATTTTCTCTCTTAATT+CGG | - | chr1_2:18580546-18580565 | None:intergenic | 15.0% |
| !! | ATTAAGCTGTTTATGTAAAA+AGG | + | chr1_2:18577286-18577305 | Msa0060730:intron | 20.0% |
| !! | TTAAGCTGTTTATGTAAAAA+GGG | + | chr1_2:18577287-18577306 | Msa0060730:intron | 20.0% |
| !! | ATTGTTTATGTATGAATGTT+AGG | + | chr1_2:18577819-18577838 | Msa0060730:intron | 20.0% |
| !!! | TTCTTACATTTTCATTGAAA+TGG | + | chr1_2:18578087-18578106 | Msa0060730:intron | 20.0% |
| !!! | TCTTACATTTTCATTGAAAT+GGG | + | chr1_2:18578088-18578107 | Msa0060730:intron | 20.0% |
| !!! | TACTTATTCTCTTCTTTTAT+TGG | - | chr1_2:18578287-18578306 | None:intergenic | 20.0% |
| !!! | GTTATGTACTAATTTTGAAA+GGG | - | chr1_2:18578406-18578425 | None:intergenic | 20.0% |
| !!! | TGTTATGTACTAATTTTGAA+AGG | - | chr1_2:18578407-18578426 | None:intergenic | 20.0% |
| !! | TTTCTCTTAAAATGAAATAG+CGG | - | chr1_2:18578606-18578625 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTTTTTAAACCA+AGG | - | chr1_2:18578641-18578660 | None:intergenic | 20.0% |
| !! | CTTGGTTTAAAAAAAAAACA+AGG | + | chr1_2:18578639-18578658 | Msa0060730:intron | 20.0% |
| !!! | TCTAGTTTTCTTTGTTATTA+TGG | + | chr1_2:18578816-18578835 | Msa0060730:intron | 20.0% |
| !!! | TTTATATTGGAAAAGTACAA+AGG | - | chr1_2:18579350-18579369 | None:intergenic | 20.0% |
| !!! | ACGTTATTAGTCTTTTATAT+TGG | - | chr1_2:18579363-18579382 | None:intergenic | 20.0% |
| !!! | TCATAAATTATACATGGTTT+TGG | + | chr1_2:18579707-18579726 | Msa0060730:intron | 20.0% |
| !! | TAGATATTCACTACATTATA+TGG | - | chr1_2:18580087-18580106 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTCTCTTAATTC+GGG | - | chr1_2:18580545-18580564 | None:intergenic | 20.0% |
| !!! | GAAAATAAAAGATGACTTTT+TGG | + | chr1_2:18580556-18580575 | Msa0060730:CDS | 20.0% |
| ! | TAACATAAGCACTTATGAAA+TGG | + | chr1_2:18577143-18577162 | Msa0060730:intron | 25.0% |
| !! | TAAAAAGGGTATAAACACTT+GGG | + | chr1_2:18577301-18577320 | Msa0060730:intron | 25.0% |
| ! | ATACATGCTTATCAAATAAG+TGG | + | chr1_2:18577362-18577381 | Msa0060730:intron | 25.0% |
| ! | TCGTTAATTTCATGAACTAA+GGG | - | chr1_2:18577601-18577620 | None:intergenic | 25.0% |
| ! | TTCGTTAATTTCATGAACTA+AGG | - | chr1_2:18577602-18577621 | None:intergenic | 25.0% |
| ! | ACTAAATTCAACGATTCAAA+AGG | + | chr1_2:18577690-18577709 | Msa0060730:intron | 25.0% |
| !! | AATTAAATTGGTGATTGACT+TGG | + | chr1_2:18577772-18577791 | Msa0060730:intron | 25.0% |
| ! | GAAAATTCGTAAATCTTCTA+AGG | - | chr1_2:18577904-18577923 | None:intergenic | 25.0% |
| ! | ATGTGTATGATTTCTTTCAT+AGG | + | chr1_2:18578223-18578242 | Msa0060730:intron | 25.0% |
| ! | TAGTATATGCATCATATTGA+GGG | - | chr1_2:18578434-18578453 | None:intergenic | 25.0% |
| ! | TTAGTATATGCATCATATTG+AGG | - | chr1_2:18578435-18578454 | None:intergenic | 25.0% |
| ! | ATACTAATAGTAGTCAATAG+CGG | + | chr1_2:18578448-18578467 | Msa0060730:intron | 25.0% |
| ! | AGAAAATACAAAATTGTCCT+TGG | + | chr1_2:18578621-18578640 | Msa0060730:intron | 25.0% |
| ! | AACTAGAACAAAAAAGTAAC+AGG | - | chr1_2:18578803-18578822 | None:intergenic | 25.0% |
| !! | GTTTTATATGAACAAAACAG+AGG | - | chr1_2:18578895-18578914 | None:intergenic | 25.0% |
| !! | TATGCAGATTTTTACATACA+TGG | + | chr1_2:18579063-18579082 | Msa0060730:intron | 25.0% |
| !! | ATGCAGATTTTTACATACAT+GGG | + | chr1_2:18579064-18579083 | Msa0060730:intron | 25.0% |
| ! | TAGTGAAAATACAACCTAAT+TGG | + | chr1_2:18579105-18579124 | Msa0060730:intron | 25.0% |
| !! | AATTGACTCTTTATGAAGTT+CGG | + | chr1_2:18579152-18579171 | Msa0060730:intron | 25.0% |
| ! | AAAAGCAATGTACATAAATG+CGG | - | chr1_2:18579192-18579211 | None:intergenic | 25.0% |
| ! | ATGCAAAACTCATTTATTGA+AGG | - | chr1_2:18579260-18579279 | None:intergenic | 25.0% |
| ! | TTCTTGAATCAAATCATATG+TGG | - | chr1_2:18579482-18579501 | None:intergenic | 25.0% |
| ! | AATTGAACCAAAAGAAAGAT+AGG | + | chr1_2:18580119-18580138 | Msa0060730:intron | 25.0% |
| !!! | TCTAAAACTTTGAAATGCAT+TGG | + | chr1_2:18580195-18580214 | Msa0060730:intron | 25.0% |
| ! | ATATTGTACGGAAAGAAATA+TGG | + | chr1_2:18580255-18580274 | Msa0060730:CDS | 25.0% |
| !! | CCTTTTAATATTACACGAAA+AGG | - | chr1_2:18580509-18580528 | None:intergenic | 25.0% |
| !! | CCTTTTCGTGTAATATTAAA+AGG | + | chr1_2:18580506-18580525 | Msa0060730:CDS | 25.0% |
| !! | AATAAAAGATGACTTTTTGG+AGG | + | chr1_2:18580559-18580578 | Msa0060730:CDS | 25.0% |
| ! | ATAAAGTACAATGATAAGAG+AGG | - | chr1_2:18581005-18581024 | None:intergenic | 25.0% |
| ! | CGGTTTTTATGTTTCTTTTG+AGG | + | chr1_2:18577039-18577058 | Msa0060730:intron | 30.0% |
| ! | GTAAAAAGGGTATAAACACT+TGG | + | chr1_2:18577300-18577319 | Msa0060730:intron | 30.0% |
| !! | CTTATTTTCATAAGCTCTTC+AGG | - | chr1_2:18577472-18577491 | None:intergenic | 30.0% |
| GTTTATGTATGAATGTTAGG+TGG | + | chr1_2:18577822-18577841 | Msa0060730:intron | 30.0% | |
| !! | GTTTGGTGTAGTATATGAAA+AGG | + | chr1_2:18577844-18577863 | Msa0060730:intron | 30.0% |
| TATATGAAAAGGTTGAGTGA+TGG | + | chr1_2:18577855-18577874 | Msa0060730:intron | 30.0% | |
| !! | ATCTTCTAAGGTAAACTCAT+TGG | - | chr1_2:18577892-18577911 | None:intergenic | 30.0% |
| ! | GATTTACGAATTTTCAGCAT+AGG | + | chr1_2:18577909-18577928 | Msa0060730:intron | 30.0% |
| ATCCTATTGAGATTAAGACA+GGG | - | chr1_2:18578051-18578070 | None:intergenic | 30.0% | |
| AGAATAAGTAGAATGTAGTG+AGG | + | chr1_2:18578297-18578316 | Msa0060730:intron | 30.0% | |
| GAATAAGTAGAATGTAGTGA+GGG | + | chr1_2:18578298-18578317 | Msa0060730:intron | 30.0% | |
| TGCATAACATTGTTGTGTTA+CGG | - | chr1_2:18578362-18578381 | None:intergenic | 30.0% | |
| ! | TATCCTGCTATAGCATTTTT+GGG | + | chr1_2:18578989-18579008 | Msa0060730:intron | 30.0% |
| ATGTGCATAGTAGTTAATAG+CGG | - | chr1_2:18579037-18579056 | None:intergenic | 30.0% | |
| ! | TTGTATTTTCACTAAACCCT+AGG | - | chr1_2:18579099-18579118 | None:intergenic | 30.0% |
| AAAGCAATGTACATAAATGC+GGG | - | chr1_2:18579191-18579210 | None:intergenic | 30.0% | |
| !! | TTATGTACATTGCTTTTGTG+TGG | + | chr1_2:18579195-18579214 | Msa0060730:intron | 30.0% |
| TAAAGCTTACACATAACTTG+AGG | + | chr1_2:18579281-18579300 | Msa0060730:intron | 30.0% | |
| ! | ACGTTAGAGTAATGTTTTTC+TGG | + | chr1_2:18579379-18579398 | Msa0060730:intron | 30.0% |
| ! | GAGTACAATAGTGATTTTGT+AGG | - | chr1_2:18579407-18579426 | None:intergenic | 30.0% |
| TGTGATTTAACTCATATGTG+TGG | - | chr1_2:18579610-18579629 | None:intergenic | 30.0% | |
| ! | AAGATTCAGGTTTAGGATTT+GGG | + | chr1_2:18579785-18579804 | Msa0060730:intron | 30.0% |
| ! | TTGCATTCCTATCTTTCTTT+TGG | - | chr1_2:18580129-18580148 | None:intergenic | 30.0% |
| TACGGAAAGAAATATGGTAT+CGG | + | chr1_2:18580261-18580280 | Msa0060730:CDS | 30.0% | |
| CATTTCTTCATATATGTCCA+TGG | - | chr1_2:18580456-18580475 | None:intergenic | 30.0% | |
| GAGTGGAATAAGAGAAATAT+TGG | + | chr1_2:18580740-18580759 | Msa0060730:three_prime_UTR | 30.0% | |
| CTTCTTCTTCTTATTGTTCC+CGG | + | chr1_2:18576788-18576807 | Msa0060730:CDS | 35.0% | |
| CAAAACCAAGCCTATCAATA+TGG | + | chr1_2:18576830-18576849 | Msa0060730:CDS | 35.0% | |
| AAGAAAGAGTTGGGTAAAGA+AGG | + | chr1_2:18576859-18576878 | Msa0060730:CDS | 35.0% | |
| AAAGAGAACAGAAACAAGGT+CGG | - | chr1_2:18576977-18576996 | None:intergenic | 35.0% | |
| ACTCAAAGAGAACAGAAACA+AGG | - | chr1_2:18576981-18577000 | None:intergenic | 35.0% | |
| CAATGTCTTTCTCTCTATGA+AGG | + | chr1_2:18577014-18577033 | Msa0060730:CDS | 35.0% | |
| TCTTTCTCTCTATGAAGGTT+CGG | + | chr1_2:18577019-18577038 | Msa0060730:intron | 35.0% | |
| AAGCACTTATGAAATGGTTC+AGG | + | chr1_2:18577149-18577168 | Msa0060730:intron | 35.0% | |
| ! | TTTTCATAAGCTCTTCAGGA+TGG | - | chr1_2:18577468-18577487 | None:intergenic | 35.0% |
| TGTATGAATGTTAGGTGGTT+TGG | + | chr1_2:18577827-18577846 | Msa0060730:intron | 35.0% | |
| TACCCTGTCTTAATCTCAAT+AGG | + | chr1_2:18578046-18578065 | Msa0060730:intron | 35.0% | |
| CATCCTATTGAGATTAAGAC+AGG | - | chr1_2:18578052-18578071 | None:intergenic | 35.0% | |
| ! | CTATCCTGCTATAGCATTTT+TGG | + | chr1_2:18578988-18579007 | Msa0060730:intron | 35.0% |
| ! | ATCCTGCTATAGCATTTTTG+GGG | + | chr1_2:18578990-18579009 | Msa0060730:intron | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr1_2:18579030-18579049 | None:intergenic | 35.0% |
| ! | TTTTCACTAAACCCTAGGTA+GGG | - | chr1_2:18579094-18579113 | None:intergenic | 35.0% |
| ! | ATTTTCACTAAACCCTAGGT+AGG | - | chr1_2:18579095-18579114 | None:intergenic | 35.0% |
| CTACTTAGAGTAGACCAATT+AGG | - | chr1_2:18579122-18579141 | None:intergenic | 35.0% | |
| ! | CTAATTGGTCTACTCTAAGT+AGG | + | chr1_2:18579120-18579139 | Msa0060730:intron | 35.0% |
| ACTCATTTATTGAAGGAGCT+TGG | - | chr1_2:18579253-18579272 | None:intergenic | 35.0% | |
| AAGTACAAAGGTAGTGTTGT+TGG | - | chr1_2:18579338-18579357 | None:intergenic | 35.0% | |
| TAAAATGGATATTTGCCCAG+GGG | - | chr1_2:18579429-18579448 | None:intergenic | 35.0% | |
| CTAAAATGGATATTTGCCCA+GGG | - | chr1_2:18579430-18579449 | None:intergenic | 35.0% | |
| ! | TACCACTGTAGGAGTTTTTA+GGG | + | chr1_2:18579503-18579522 | Msa0060730:intron | 35.0% |
| GAGAGTAGTAATATCACAAG+AGG | - | chr1_2:18579585-18579604 | None:intergenic | 35.0% | |
| ! | TGAGATCAAGATTCAGGTTT+AGG | + | chr1_2:18579778-18579797 | Msa0060730:intron | 35.0% |
| ! | CAAGATTCAGGTTTAGGATT+TGG | + | chr1_2:18579784-18579803 | Msa0060730:intron | 35.0% |
| TAGATCATCGACAATGCTAA+GGG | - | chr1_2:18579861-18579880 | None:intergenic | 35.0% | |
| TTAGATCATCGACAATGCTA+AGG | - | chr1_2:18579862-18579881 | None:intergenic | 35.0% | |
| ! | TAAACTCTTAAGTATTGCCG+TGG | + | chr1_2:18579879-18579898 | Msa0060730:intron | 35.0% |
| CCATAAAGTTCAGTAGCATA+AGG | - | chr1_2:18580046-18580065 | None:intergenic | 35.0% | |
| CCTTATGCTACTGAACTTTA+TGG | + | chr1_2:18580043-18580062 | Msa0060730:intron | 35.0% | |
| CAATATCGTACAACTGAGAA+AGG | - | chr1_2:18580241-18580260 | None:intergenic | 35.0% | |
| CTCAGTTGTACGATATTGTA+CGG | + | chr1_2:18580243-18580262 | Msa0060730:intron | 35.0% | |
| TCCCTATAAAAGAACATGTC+CGG | - | chr1_2:18580287-18580306 | None:intergenic | 35.0% | |
| TGATGCTTGCAAGAAACAAA+AGG | + | chr1_2:18580315-18580334 | Msa0060730:CDS | 35.0% | |
| GATGCTTGCAAGAAACAAAA+GGG | + | chr1_2:18580316-18580335 | Msa0060730:CDS | 35.0% | |
| CTATTTGATCAGCATACGTT+TGG | + | chr1_2:18580386-18580405 | Msa0060730:CDS | 35.0% | |
| ATTAGAGCCTATCTTGATAG+TGG | + | chr1_2:18580416-18580435 | Msa0060730:CDS | 35.0% | |
| TCTCTCTTAATTCGGGATAT+GGG | - | chr1_2:18580538-18580557 | None:intergenic | 35.0% | |
| TTCTCTCTTAATTCGGGATA+TGG | - | chr1_2:18580539-18580558 | None:intergenic | 35.0% | |
| GACATTTATTGAGTCAGTGT+TGG | + | chr1_2:18580662-18580681 | Msa0060730:exon | 35.0% | |
| CAAAGTGCAGATAATAGTGT+CGG | - | chr1_2:18580829-18580848 | None:intergenic | 35.0% | |
| AGGATCATTACTGGGATTAA+TGG | - | chr1_2:18580985-18581004 | None:intergenic | 35.0% | |
| GATAAGAGAGGATCATTACT+GGG | - | chr1_2:18580993-18581012 | None:intergenic | 35.0% | |
| TGATAAGAGAGGATCATTAC+TGG | - | chr1_2:18580994-18581013 | None:intergenic | 35.0% | |
| TATTGTTCCCGGTTCATTAC+CGG | + | chr1_2:18576799-18576818 | Msa0060730:CDS | 40.0% | |
| AACCAAGCCTATCAATATGG+AGG | + | chr1_2:18576833-18576852 | Msa0060730:CDS | 40.0% | |
| TCTTTCGCCTCCATATTGAT+AGG | - | chr1_2:18576843-18576862 | None:intergenic | 40.0% | |
| TTTGAGCAAGCGAGAAACAT+TGG | - | chr1_2:18576953-18576972 | None:intergenic | 40.0% | |
| ! | TCTCTTTGAGTTCCATAGAC+AGG | + | chr1_2:18576990-18577009 | Msa0060730:CDS | 40.0% |
| GAAAGACATTGTCCTGTCTA+TGG | - | chr1_2:18577005-18577024 | None:intergenic | 40.0% | |
| TGTCTCTGACATGCAATTTG+AGG | + | chr1_2:18577666-18577685 | Msa0060730:intron | 40.0% | |
| ATTAAGACAGGGTAAAGCCA+TGG | - | chr1_2:18578040-18578059 | None:intergenic | 40.0% | |
| ! | GTTGTCACTGATATTAGCCT+TGG | + | chr1_2:18578162-18578181 | Msa0060730:intron | 40.0% |
| TAGAGGAAGATTTACAGCAG+AGG | - | chr1_2:18578717-18578736 | None:intergenic | 40.0% | |
| !!! | TGCTATAGCATTTTTGGGGT+CGG | + | chr1_2:18578994-18579013 | Msa0060730:intron | 40.0% |
| !! | ATTGCTTTTGTGTGGAATGC+AGG | + | chr1_2:18579203-18579222 | Msa0060730:intron | 40.0% |
| !! | ACTTGAGGCATTGTTCAATC+CGG | + | chr1_2:18579296-18579315 | Msa0060730:intron | 40.0% |
| !! | TGGCTCTAATGTTGAATCTC+CGG | - | chr1_2:18579318-18579337 | None:intergenic | 40.0% |
| AAATCACTATTGTACTCCCC+TGG | + | chr1_2:18579410-18579429 | Msa0060730:intron | 40.0% | |
| AATCACTATTGTACTCCCCT+GGG | + | chr1_2:18579411-18579430 | Msa0060730:intron | 40.0% | |
| CCTAAAATGGATATTTGCCC+AGG | - | chr1_2:18579431-18579450 | None:intergenic | 40.0% | |
| ! | CCTGGGCAAATATCCATTTT+AGG | + | chr1_2:18579428-18579447 | Msa0060730:intron | 40.0% |
| ! | GGGCAAATATCCATTTTAGG+CGG | + | chr1_2:18579431-18579450 | Msa0060730:intron | 40.0% |
| ! | GTGGAATCTTGTTTGCATTC+TGG | - | chr1_2:18579463-18579482 | None:intergenic | 40.0% |
| !! | GATTCAAGAAGTACCACTGT+AGG | + | chr1_2:18579492-18579511 | Msa0060730:intron | 40.0% |
| ! | GTACCACTGTAGGAGTTTTT+AGG | + | chr1_2:18579502-18579521 | Msa0060730:intron | 40.0% |
| !! | ACCACTGTAGGAGTTTTTAG+GGG | + | chr1_2:18579504-18579523 | Msa0060730:intron | 40.0% |
| !! | AGTTTTTAGGGGATCAACAG+AGG | + | chr1_2:18579515-18579534 | Msa0060730:intron | 40.0% |
| CTTGCATGAGATCAAGATTC+AGG | + | chr1_2:18579772-18579791 | Msa0060730:intron | 40.0% | |
| TCCTCACTATATCAAGACTC+TGG | + | chr1_2:18579817-18579836 | Msa0060730:intron | 40.0% | |
| TCCAGAGTCTTGATATAGTG+AGG | - | chr1_2:18579821-18579840 | None:intergenic | 40.0% | |
| ! | TCTTAAGTATTGCCGTGGAT+AGG | + | chr1_2:18579884-18579903 | Msa0060730:intron | 40.0% |
| TAGGTAGAATTGCCTATCCA+CGG | - | chr1_2:18579899-18579918 | None:intergenic | 40.0% | |
| GATAGGCAATTCTACCTAGT+GGG | + | chr1_2:18579901-18579920 | Msa0060730:intron | 40.0% | |
| ! | CTTGAAAGTTTGTTCCCACT+AGG | - | chr1_2:18579918-18579937 | None:intergenic | 40.0% |
| !! | GAAAGAAATATGGTATCGGC+CGG | + | chr1_2:18580265-18580284 | Msa0060730:CDS | 40.0% |
| ! | GCCGGACATGTTCTTTTATA+GGG | + | chr1_2:18580283-18580302 | Msa0060730:CDS | 40.0% |
| AAAGGGTGGATGAAACAAAG+AGG | + | chr1_2:18580333-18580352 | Msa0060730:CDS | 40.0% | |
| AAGGGTGGATGAAACAAAGA+GGG | + | chr1_2:18580334-18580353 | Msa0060730:CDS | 40.0% | |
| TGGGATGATTTGAAAGGAGA+GGG | + | chr1_2:18580359-18580378 | Msa0060730:CDS | 40.0% | |
| !! | TGACTTTTTGGAGGTTTTCC+CGG | + | chr1_2:18580568-18580587 | Msa0060730:CDS | 40.0% |
| GGTCATAGATGATCATATCC+GGG | - | chr1_2:18580589-18580608 | None:intergenic | 40.0% | |
| GGGTCATAGATGATCATATC+CGG | - | chr1_2:18580590-18580609 | None:intergenic | 40.0% | |
| TTATACACCTCCTCACATTC+AGG | + | chr1_2:18580689-18580708 | Msa0060730:three_prime_UTR | 40.0% | |
| TTACTCGAAATTGCAGCTAC+CGG | - | chr1_2:18580938-18580957 | None:intergenic | 40.0% | |
| CAGTGCAATTCGCAGCATTA+AGG | - | chr1_2:18576737-18576756 | None:intergenic | 45.0% | |
| ATGGAGGCGAAAGAAAGAGT+TGG | + | chr1_2:18576849-18576868 | Msa0060730:CDS | 45.0% | |
| TGGAGGCGAAAGAAAGAGTT+GGG | + | chr1_2:18576850-18576869 | Msa0060730:CDS | 45.0% | |
| TTGGAGTCTCTTGAGCTCTT+TGG | - | chr1_2:18576896-18576915 | None:intergenic | 45.0% | |
| ACAAACCGGTCTAAACGAAC+CGG | - | chr1_2:18576925-18576944 | None:intergenic | 45.0% | |
| !! | TTCGTTTAGACCGGTTTGTC+CGG | + | chr1_2:18576926-18576945 | Msa0060730:CDS | 45.0% |
| AAACATTGGACCGGACAAAC+CGG | - | chr1_2:18576939-18576958 | None:intergenic | 45.0% | |
| ! | TCATGAACTAAGGGCGTGTT+TGG | - | chr1_2:18577592-18577611 | None:intergenic | 45.0% |
| TTACTTGCAGTCAAGAGCCA+TGG | + | chr1_2:18578020-18578039 | Msa0060730:intron | 45.0% | |
| CATCTAACGTTCAAGAGCCA+AGG | - | chr1_2:18578182-18578201 | None:intergenic | 45.0% | |
| GCTCTTGAACGTTAGATGTG+AGG | + | chr1_2:18578184-18578203 | Msa0060730:intron | 45.0% | |
| TAGTGAGGGTCTTACGAATG+AGG | + | chr1_2:18578312-18578331 | Msa0060730:intron | 45.0% | |
| ACAGAACAGCAGAAAAGCAG+AGG | - | chr1_2:18578682-18578701 | None:intergenic | 45.0% | |
| CAGAAACAGAGAGAGCAGAA+TGG | - | chr1_2:18578851-18578870 | None:intergenic | 45.0% | |
| GACCCCAAAAATGCTATAGC+AGG | - | chr1_2:18578995-18579014 | None:intergenic | 45.0% | |
| TACATGGGTAATCCCTACCT+AGG | + | chr1_2:18579079-18579098 | Msa0060730:intron | 45.0% | |
| ACATGGGTAATCCCTACCTA+GGG | + | chr1_2:18579080-18579099 | Msa0060730:intron | 45.0% | |
| CTGGTACTATCCGCCTAAAA+TGG | - | chr1_2:18579444-18579463 | None:intergenic | 45.0% | |
| TCCCCTAAAAACTCCTACAG+TGG | - | chr1_2:18579508-18579527 | None:intergenic | 45.0% | |
| TTTAGGGGATCAACAGAGGT+TGG | + | chr1_2:18579519-18579538 | Msa0060730:intron | 45.0% | |
| GGATAGGCAATTCTACCTAG+TGG | + | chr1_2:18579900-18579919 | Msa0060730:intron | 45.0% | |
| ! | GGCCGGACATGTTCTTTTAT+AGG | + | chr1_2:18580282-18580301 | Msa0060730:CDS | 45.0% |
| GCTTGCAAGAAACAAAAGGG+TGG | + | chr1_2:18580319-18580338 | Msa0060730:CDS | 45.0% | |
| TGGATGAAACAAAGAGGGTG+TGG | + | chr1_2:18580339-18580358 | Msa0060730:CDS | 45.0% | |
| ! | GGATGAAACAAAGAGGGTGT+GGG | + | chr1_2:18580340-18580359 | Msa0060730:CDS | 45.0% |
| AGGGTGTGGGATGATTTGAA+AGG | + | chr1_2:18580353-18580372 | Msa0060730:CDS | 45.0% | |
| GTGGGATGATTTGAAAGGAG+AGG | + | chr1_2:18580358-18580377 | Msa0060730:CDS | 45.0% | |
| GGGCATACCACTATCAAGAT+AGG | - | chr1_2:18580426-18580445 | None:intergenic | 45.0% | |
| TATATGTCCATGGCCTCTGA+GGG | - | chr1_2:18580446-18580465 | None:intergenic | 45.0% | |
| ATATATGTCCATGGCCTCTG+AGG | - | chr1_2:18580447-18580466 | None:intergenic | 45.0% | |
| ACACGAAAAGGTAACGACAG+AGG | - | chr1_2:18580497-18580516 | None:intergenic | 45.0% | |
| TGATCGTCGAACAAATCCTC+AGG | - | chr1_2:18580614-18580633 | None:intergenic | 45.0% | |
| AATGTCTGGTCCTGAATGTG+AGG | - | chr1_2:18580702-18580721 | None:intergenic | 45.0% | |
| CACATTCAGGACCAGACATT+CGG | + | chr1_2:18580702-18580721 | Msa0060730:three_prime_UTR | 45.0% | |
| ! | AGTGCAGATAATAGTGTCGG+TGG | - | chr1_2:18580826-18580845 | None:intergenic | 45.0% |
| TACTCGAAATTGCAGCTACC+GGG | - | chr1_2:18580937-18580956 | None:intergenic | 45.0% | |
| !!! | TTGATTAAAAATTTTATTTT+CGG | + | chr1_2:18577719-18577738 | Msa0060730:intron | 5.0% |
| ! | TTCCCGGTTCATTACCGGTT+CGG | + | chr1_2:18576804-18576823 | Msa0060730:CDS | 50.0% |
| AAGCCGAACCGGTAATGAAC+CGG | - | chr1_2:18576810-18576829 | None:intergenic | 50.0% | |
| !!! | GCTTGGTTTTGAAGCCGAAC+CGG | - | chr1_2:18576821-18576840 | None:intergenic | 50.0% |
| CGCCTCCATATTGATAGGCT+TGG | - | chr1_2:18576838-18576857 | None:intergenic | 50.0% | |
| CAAACCGGTCTAAACGAACC+GGG | - | chr1_2:18576924-18576943 | None:intergenic | 50.0% | |
| GCAAGCGAGAAACATTGGAC+CGG | - | chr1_2:18576948-18576967 | None:intergenic | 50.0% | |
| TGCAACAAGCCATAGCGTTG+CGG | + | chr1_2:18578523-18578542 | Msa0060730:intron | 50.0% | |
| TATCTCACACCGCAACGCTA+TGG | - | chr1_2:18578535-18578554 | None:intergenic | 50.0% | |
| ! | AACGCTTCGTAGCGGTTTTG+CGG | + | chr1_2:18578573-18578592 | Msa0060730:intron | 50.0% |
| GAGCAAACGCGACAAAGTAG+AGG | - | chr1_2:18578734-18578753 | None:intergenic | 50.0% | |
| !! | TGATAGTGGTATGCCCTCAG+AGG | + | chr1_2:18580430-18580449 | Msa0060730:CDS | 50.0% |
| CGAAAAGGTAACGACAGAGG+AGG | - | chr1_2:18580494-18580513 | None:intergenic | 50.0% | |
| GATCATCTATGACCCTCCTG+AGG | + | chr1_2:18580595-18580614 | Msa0060730:CDS | 50.0% | |
| CGTCGAACAAATCCTCAGGA+GGG | - | chr1_2:18580610-18580629 | None:intergenic | 50.0% | |
| TCGTCGAACAAATCCTCAGG+AGG | - | chr1_2:18580611-18580630 | None:intergenic | 50.0% | |
| GGAGCGGGAACAAATATGAG+TGG | + | chr1_2:18580723-18580742 | Msa0060730:three_prime_UTR | 50.0% | |
| TGACATGCAATGCTGAGACC+CGG | + | chr1_2:18580916-18580935 | Msa0060730:three_prime_UTR | 50.0% | |
| AGCCGAACCGGTAATGAACC+GGG | - | chr1_2:18576809-18576828 | None:intergenic | 55.0% | |
| CAAGAGACTCCAAACCGACC+CGG | + | chr1_2:18576903-18576922 | Msa0060730:CDS | 55.0% | |
| CTAAACGAACCGGGTCGGTT+TGG | - | chr1_2:18576915-18576934 | None:intergenic | 55.0% | |
| TGGGCTTGAGCTCTGTCACA+TGG | + | chr1_2:18578107-18578126 | Msa0060730:intron | 55.0% | |
| !! | TGGCTTGTTGCATAGCGCTC+CGG | - | chr1_2:18578515-18578534 | None:intergenic | 55.0% |
| AGCGTTGCGGTGTGAGATAG+CGG | + | chr1_2:18578536-18578555 | Msa0060730:intron | 55.0% | |
| ! | GTGAGATAGCGGCGCTATAG+CGG | + | chr1_2:18578547-18578566 | Msa0060730:intron | 55.0% |
| CAGAGAGAGCAGAATGGCGT+TGG | - | chr1_2:18578845-18578864 | None:intergenic | 55.0% | |
| ! | CGACGATCATGAGAAGCACG+AGG | + | chr1_2:18580625-18580644 | Msa0060730:CDS | 55.0% |
| GTCTGGTCCTGAATGTGAGG+AGG | - | chr1_2:18580699-18580718 | None:intergenic | 55.0% | |
| TCAGGACCAGACATTCGGAG+CGG | + | chr1_2:18580707-18580726 | Msa0060730:three_prime_UTR | 55.0% | |
| TTGTTCCCGCTCCGAATGTC+TGG | - | chr1_2:18580716-18580735 | None:intergenic | 55.0% | |
| CCGGTCTAAACGAACCGGGT+CGG | - | chr1_2:18576920-18576939 | None:intergenic | 60.0% | |
| ! | CCGACCCGGTTCGTTTAGAC+CGG | + | chr1_2:18576917-18576936 | Msa0060730:CDS | 60.0% |
| GGCCAATAGCGCCGCTATAG+CGG | + | chr1_2:18578469-18578488 | Msa0060730:intron | 60.0% | |
| ! | TAGCGGATAGCGGCGCATAG+CGG | - | chr1_2:18579020-18579039 | None:intergenic | 60.0% |
| TGGTATGCCCTCAGAGGCCA+TGG | + | chr1_2:18580436-18580455 | Msa0060730:CDS | 60.0% | |
| GGTAACGACAGAGGAGGCTC+AGG | - | chr1_2:18580488-18580507 | None:intergenic | 60.0% | |
| CAGGACCAGACATTCGGAGC+GGG | + | chr1_2:18580708-18580727 | Msa0060730:three_prime_UTR | 60.0% | |
| GGCCGCTATAGCGGCGCTAT+TGG | - | chr1_2:18578474-18578493 | None:intergenic | 65.0% | |
| AGCGGCGCAACGCTTCGTAG+CGG | + | chr1_2:18578565-18578584 | Msa0060730:intron | 65.0% | |
| GCACCGCGCGGCCGCTATAG+CGG | - | chr1_2:18578483-18578502 | None:intergenic | 75.0% | |
| GCTATAGCGGCCGCGCGGTG+CGG | + | chr1_2:18578482-18578501 | Msa0060730:intron | 75.0% | |
| ! | GCGCCGCTATAGCGGCCGCG+CGG | + | chr1_2:18578477-18578496 | Msa0060730:intron | 80.0% |
| ! | AGCGGCCGCGCGGTGCGGTG+CGG | + | chr1_2:18578487-18578506 | Msa0060730:intron | 85.0% |
| ! | CGGCACCGCACCGCACCGCG+CGG | - | chr1_2:18578495-18578514 | None:intergenic | 85.0% |
| ! | CGCGCGGTGCGGTGCGGTGC+CGG | + | chr1_2:18578493-18578512 | Msa0060730:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18576679 | 18581058 | 18576679 | ID=Msa0060730;Name=Msa0060730 |
| chr1_2 | mRNA | 18576679 | 18581058 | 18576679 | ID=Msa0060730-mRNA-1;Parent=Msa0060730;Name=Msa0060730-mRNA-1;_AED=0.12;_eAED=0.12;_QI=60|1|1|1|1|1|2|385|240 |
| chr1_2 | exon | 18576679 | 18577035 | 18576679 | ID=Msa0060730-mRNA-1:exon:7198;Parent=Msa0060730-mRNA-1 |
| chr1_2 | exon | 18580248 | 18581058 | 18580248 | ID=Msa0060730-mRNA-1:exon:7199;Parent=Msa0060730-mRNA-1 |
| chr1_2 | five_prime_UTR | 18576679 | 18576738 | 18576679 | ID=Msa0060730-mRNA-1:five_prime_utr;Parent=Msa0060730-mRNA-1 |
| chr1_2 | CDS | 18576739 | 18577035 | 18576739 | ID=Msa0060730-mRNA-1:cds;Parent=Msa0060730-mRNA-1 |
| chr1_2 | CDS | 18580248 | 18580673 | 18580248 | ID=Msa0060730-mRNA-1:cds;Parent=Msa0060730-mRNA-1 |
| chr1_2 | three_prime_UTR | 18580674 | 18581058 | 18580674 | ID=Msa0060730-mRNA-1:three_prime_utr;Parent=Msa0060730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
