AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526700 MtrunA17_Chr1g0190771 98.765 243 3 0 16 258 137 379 0.0 504
Msa0526700 MtrunA17_Chr7g0274131 92.116 241 18 1 16 256 138 377 7.19e-168 468
Msa0526700 MtrunA17_Chr4g0067461 30.244 205 137 4 16 219 213 412 2.30e-20 89.4
Msa0526700 MtrunA17_Chr2g0327981 32.927 164 106 3 46 208 174 334 4.36e-18 82.4
Msa0526700 MtrunA17_Chr1g0195521 27.830 212 147 4 16 226 241 447 1.51e-17 81.6
Msa0526700 MtrunA17_Chr4g0031131 31.707 164 108 3 46 208 168 328 1.59e-17 80.9
Msa0526700 MtrunA17_Chr7g0268991 26.977 215 142 7 16 221 112 320 4.02e-16 76.6
Msa0526700 MtrunA17_Chr1g0182091 28.351 194 133 4 16 208 23 211 7.71e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526700 AT5G28840.2 92.116 241 19 0 16 256 137 377 5.82e-169 472
Msa0526700 AT5G28840.1 92.116 241 19 0 16 256 137 377 5.82e-169 472
Msa0526700 AT3G62830.2 28.774 212 145 4 16 226 226 432 3.73e-19 86.7
Msa0526700 AT3G62830.1 28.774 212 145 4 16 226 226 432 3.73e-19 86.7
Msa0526700 AT2G47650.1 30.928 194 128 4 16 208 228 416 4.67e-19 86.3
Msa0526700 AT3G46440.2 33.537 164 105 3 46 208 165 325 6.04e-19 85.1
Msa0526700 AT3G46440.1 33.537 164 105 3 46 208 165 325 6.04e-19 85.1
Msa0526700 AT2G28760.1 33.537 164 105 3 46 208 167 327 1.07e-18 84.3
Msa0526700 AT2G28760.2 33.537 164 105 3 46 208 167 327 1.07e-18 84.3
Msa0526700 AT2G28760.3 33.537 164 105 3 46 208 167 327 1.07e-18 84.3
Msa0526700 AT2G28760.4 33.537 164 105 3 46 208 198 358 1.23e-18 84.7
Msa0526700 AT3G53520.1 28.972 214 145 5 16 227 227 435 1.44e-18 84.7
Msa0526700 AT5G59290.2 32.317 164 107 3 46 208 181 341 6.63e-18 82.4
Msa0526700 AT5G59290.1 32.317 164 107 3 46 208 166 326 7.57e-18 82.0
Msa0526700 AT5G59290.4 32.317 164 107 3 46 208 137 297 8.74e-18 81.6
Msa0526700 AT5G59290.3 32.317 164 107 3 46 208 159 319 1.18e-17 81.6
Msa0526700 AT1G73250.1 28.019 207 136 6 16 214 114 315 1.38e-17 81.3
Msa0526700 AT2G47650.2 30.000 200 128 5 16 208 228 422 1.98e-17 81.6
Msa0526700 AT1G17890.2 27.189 217 143 7 16 223 109 319 1.29e-16 78.6
Msa0526700 AT1G17890.3 27.189 217 143 7 16 223 109 319 1.29e-16 78.6
Msa0526700 AT1G17890.1 27.189 217 143 7 16 223 117 327 1.29e-16 78.6
Msa0526700 AT3G53520.2 28.037 214 145 6 16 227 227 433 1.38e-15 76.3
Msa0526700 AT3G53520.4 26.360 239 144 7 16 227 225 458 1.69e-14 73.2

Find 70 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAACATATATGGTCCTTT+TGG 0.258635 3_4:-80727052 Msa0526700:CDS
CTGCCCGAAGTGAGCCTAAT+TGG 0.271744 3_4:+80725839 None:intergenic
TTCCGCGAGCCGGTAAATAT+TGG 0.274622 3_4:-80726363 Msa0526700:CDS
GTTTCTAACTGTTTAAATTC+AGG 0.285374 3_4:+80727312 None:intergenic
GAGATGGCTGAGATCGTTCT+TGG 0.352457 3_4:-80726315 Msa0526700:CDS
TATACCTTCAACTTCATTGT+TGG 0.357453 3_4:+80726189 None:intergenic
GCCTAATTGGACCGGTGCTT+GGG 0.360185 3_4:+80725852 None:intergenic
ATTTACCGGCTCGCGGAAAT+CGG 0.371961 3_4:+80726368 None:intergenic
CAAAAGGACCATATATGTTA+TGG 0.374113 3_4:+80727053 None:intergenic
AAGCACTACAACAAAGATTT+CGG 0.376422 3_4:-80727100 Msa0526700:CDS
TCATCACTTCCAATATTTAC+CGG 0.378878 3_4:+80726354 None:intergenic
AGCCTAATTGGACCGGTGCT+TGG 0.382304 3_4:+80725851 None:intergenic
GATTACATATGTCTGGATTA+AGG 0.386996 3_4:-80725944 Msa0526700:CDS
GGGAGGTTCCATAACATATA+TGG 0.396979 3_4:-80727061 Msa0526700:CDS
AACTACTAATGTCAGCTTGA+AGG 0.417690 3_4:-80727292 Msa0526700:CDS
TTTCTAACTGTTTAAATTCA+GGG 0.425655 3_4:+80727313 None:intergenic
GGCTGAGGATTACATATGTC+TGG 0.425884 3_4:-80725951 Msa0526700:CDS
TTACGACCACGAACACCCTC+TGG 0.430857 3_4:+80726252 None:intergenic
GGGCCAGGAATGTGATGTAT+AGG 0.440229 3_4:+80726273 None:intergenic
TTCGGAATTGAGTGCCGCAT+TGG 0.455787 3_4:-80727082 Msa0526700:CDS
TTCATTGATGAGTGTGTTGA+AGG 0.460492 3_4:-80726797 Msa0526700:CDS
CCACGAACACCCTCTGGGCC+AGG 0.469580 3_4:+80726258 None:intergenic
GGTCCAATTAGGCTCACTTC+GGG 0.470769 3_4:-80725842 Msa0526700:CDS
TCGGAATTGAGTGCCGCATT+GGG 0.470875 3_4:-80727081 Msa0526700:CDS
ACTCCTATACATCACATTCC+TGG 0.476449 3_4:-80726276 Msa0526700:CDS
ACCCAAGCACCGGTCCAATT+AGG 0.477394 3_4:-80725853 Msa0526700:CDS
CCTGGCCCAGAGGGTGTTCG+TGG 0.486762 3_4:-80726258 Msa0526700:CDS
AAATTTGAGATGTGGGGAGA+TGG 0.493691 3_4:-80726842 Msa0526700:CDS
TAAATCCGATTTCCGCGAGC+CGG 0.501210 3_4:-80726373 Msa0526700:CDS
TACAGACAAATTTGAGATGT+GGG 0.508195 3_4:-80726849 Msa0526700:CDS
GGCTCCAACAATGAAGTTGA+AGG 0.508928 3_4:-80726193 Msa0526700:intron
GATTAAGGAACAACTTGAAA+GGG 0.521122 3_4:-80725929 Msa0526700:CDS
CGGTCCAATTAGGCTCACTT+CGG 0.527001 3_4:-80725843 Msa0526700:CDS
GCTCAAGGTCTTGATACATC+AGG 0.527626 3_4:-80725901 Msa0526700:CDS
ATACCTTTCCATGTTCCAAA+AGG 0.529802 3_4:+80727037 None:intergenic
AATCGCGAACAAACCTCAGC+AGG 0.536092 3_4:+80727255 None:intergenic
TAATAAAAGAGAAACTTGGC+TGG 0.537272 3_4:-80726215 Msa0526700:CDS
TGCTTTGTCATACAGGTGGA+AGG 0.539745 3_4:-80726913 Msa0526700:intron
TTCAACACACTCATCAATGA+AGG 0.550166 3_4:+80726799 None:intergenic
GTTTAGCCACAAGATGCGTA+TGG 0.550376 3_4:-80727154 Msa0526700:intron
GGCTCACTTCGGGCAGCAGA+CGG 0.553347 3_4:-80725832 Msa0526700:CDS
CGAAGTGAGCCTAATTGGAC+CGG 0.556358 3_4:+80725844 None:intergenic
TGGTATTGTAGGATGGGCTG+AGG 0.562487 3_4:-80725966 Msa0526700:intron
TCATACAGGTGGAAGGGAGA+AGG 0.564053 3_4:-80726906 Msa0526700:intron
GGATTAAGGAACAACTTGAA+AGG 0.565415 3_4:-80725930 Msa0526700:CDS
GTCTGATGCATGGCCTGCTG+AGG 0.565899 3_4:-80727268 Msa0526700:intron
GGTCTTGATACATCAGGATA+CGG 0.574577 3_4:-80725895 Msa0526700:CDS
CTTGAAAGGGAGAAGGCTCA+AGG 0.580968 3_4:-80725916 Msa0526700:CDS
TACGACCACGAACACCCTCT+GGG 0.582303 3_4:+80726253 None:intergenic
GCTAGAGAAGCTTGCAACAG+AGG 0.582464 3_4:-80727131 Msa0526700:CDS
GAATTGAGTGCCGCATTGGG+AGG 0.584070 3_4:-80727078 Msa0526700:CDS
ACACTAATAAAAGAGAAACT+TGG 0.584612 3_4:-80726219 Msa0526700:CDS
AGTGTGTTGAAGGTGTACTT+AGG 0.590072 3_4:-80726787 Msa0526700:intron
AGGATACGGCTCATCAAAAG+TGG 0.590362 3_4:-80725881 Msa0526700:CDS
CATCACATTCCTGGCCCAGA+GGG 0.594287 3_4:-80726267 Msa0526700:CDS
TTCCAATATTTACCGGCTCG+CGG 0.595261 3_4:+80726361 None:intergenic
TTTAGCCACAAGATGCGTAT+GGG 0.596572 3_4:-80727153 Msa0526700:intron
CTACAGACAAATTTGAGATG+TGG 0.598727 3_4:-80726850 Msa0526700:CDS
AATAAAAGAGAAACTTGGCT+GGG 0.602593 3_4:-80726214 Msa0526700:CDS
GCTTTGTCATACAGGTGGAA+GGG 0.602719 3_4:-80726912 Msa0526700:intron
AGTGGTGCAAACCCAAGCAC+CGG 0.611968 3_4:-80725863 Msa0526700:CDS
AAATATTGGAAGTGATGAGA+TGG 0.614662 3_4:-80726349 Msa0526700:CDS
TCTAGCCCATACGCATCTTG+TGG 0.616959 3_4:+80727148 None:intergenic
GGAACAACTTGAAAGGGAGA+AGG 0.619660 3_4:-80725923 Msa0526700:CDS
GCTTGAAGGAGTCTGATGCA+TGG 0.646402 3_4:-80727278 Msa0526700:CDS
ACAGACAAATTTGAGATGTG+GGG 0.667327 3_4:-80726848 Msa0526700:CDS
ACATCACATTCCTGGCCCAG+AGG 0.671457 3_4:-80726268 Msa0526700:CDS
AGGGTAGATACAAGCACTTG+AGG 0.678133 3_4:+80727332 None:intergenic
GATGGTCAGCATGAATGAGA+TGG 0.684833 3_4:-80726331 Msa0526700:CDS
TGTTATGGAACCTCCCAATG+CGG 0.724863 3_4:+80727068 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTACATTAAGCTT+GGG - chr3_4:80726003-80726022 Msa0526700:intron 15.0%
!!! TTAGTAGATGTTTTTAATTT+TGG - chr3_4:80726244-80726263 Msa0526700:CDS 15.0%
!!! TAATAAGTTTTTATCCAATT+TGG - chr3_4:80727069-80727088 Msa0526700:CDS 15.0%
!!! TTTATTTTTACATTAAGCTT+GGG - chr3_4:80726003-80726022 Msa0526700:intron 15.0%
!!! TTAGTAGATGTTTTTAATTT+TGG - chr3_4:80726244-80726263 Msa0526700:CDS 15.0%
!!! TAATAAGTTTTTATCCAATT+TGG - chr3_4:80727069-80727088 Msa0526700:CDS 15.0%
!! TTTCTAACTGTTTAAATTCA+GGG + chr3_4:80725896-80725915 None:intergenic 20.0%
!!! CTTTATTTTTACATTAAGCT+TGG - chr3_4:80726002-80726021 Msa0526700:intron 20.0%
!!! GAATTATAATTTTGAGCTTA+TGG - chr3_4:80726515-80726534 Msa0526700:intron 20.0%
!!! ATAATTTTAGTATCCGTAAT+TGG - chr3_4:80726700-80726719 Msa0526700:intron 20.0%
!! ATTCATTAAAGTCAAACAAT+AGG + chr3_4:80727178-80727197 None:intergenic 20.0%
!! TGACTTTAATGAATATTCAA+AGG - chr3_4:80727184-80727203 Msa0526700:intron 20.0%
!! GACTTTAATGAATATTCAAA+GGG - chr3_4:80727185-80727204 Msa0526700:intron 20.0%
!! TTTCTAACTGTTTAAATTCA+GGG + chr3_4:80725896-80725915 None:intergenic 20.0%
!!! CTTTATTTTTACATTAAGCT+TGG - chr3_4:80726002-80726021 Msa0526700:intron 20.0%
!!! GAATTATAATTTTGAGCTTA+TGG - chr3_4:80726515-80726534 Msa0526700:intron 20.0%
!!! ATAATTTTAGTATCCGTAAT+TGG - chr3_4:80726700-80726719 Msa0526700:intron 20.0%
!! ATTCATTAAAGTCAAACAAT+AGG + chr3_4:80727178-80727197 None:intergenic 20.0%
!! TGACTTTAATGAATATTCAA+AGG - chr3_4:80727184-80727203 Msa0526700:intron 20.0%
!! GACTTTAATGAATATTCAAA+GGG - chr3_4:80727185-80727204 Msa0526700:intron 20.0%
!! AAACAAACATTTTTCGCAAT+TGG + chr3_4:80725838-80725857 None:intergenic 25.0%
! GTTTCTAACTGTTTAAATTC+AGG + chr3_4:80725897-80725916 None:intergenic 25.0%
!!! CATCTACTAATTTGCTTATT+CGG + chr3_4:80726234-80726253 None:intergenic 25.0%
! AAAAAACACATGAATAAAGC+TGG + chr3_4:80726477-80726496 None:intergenic 25.0%
! ACATGAAAAGTTTGGTTAAA+TGG + chr3_4:80726565-80726584 None:intergenic 25.0%
! ACACTAATAAAAGAGAAACT+TGG - chr3_4:80726987-80727006 Msa0526700:intron 25.0%
! TTATTAAGACACAAGAAAGA+AGG + chr3_4:80727055-80727074 None:intergenic 25.0%
!!! GAAAGTGTAATGGAATTTTT+AGG - chr3_4:80727110-80727129 Msa0526700:CDS 25.0%
! TTAAAGTCAAACAATAGGAA+AGG + chr3_4:80727173-80727192 None:intergenic 25.0%
! TATCTAAATTCTGGTATTGT+AGG - chr3_4:80727229-80727248 Msa0526700:intron 25.0%
!! AAACAAACATTTTTCGCAAT+TGG + chr3_4:80725838-80725857 None:intergenic 25.0%
! GTTTCTAACTGTTTAAATTC+AGG + chr3_4:80725897-80725916 None:intergenic 25.0%
!!! CATCTACTAATTTGCTTATT+CGG + chr3_4:80726234-80726253 None:intergenic 25.0%
! AAAAAACACATGAATAAAGC+TGG + chr3_4:80726477-80726496 None:intergenic 25.0%
! ACATGAAAAGTTTGGTTAAA+TGG + chr3_4:80726565-80726584 None:intergenic 25.0%
! ACACTAATAAAAGAGAAACT+TGG - chr3_4:80726987-80727006 Msa0526700:intron 25.0%
! TTATTAAGACACAAGAAAGA+AGG + chr3_4:80727055-80727074 None:intergenic 25.0%
!!! GAAAGTGTAATGGAATTTTT+AGG - chr3_4:80727110-80727129 Msa0526700:CDS 25.0%
! TTAAAGTCAAACAATAGGAA+AGG + chr3_4:80727173-80727192 None:intergenic 25.0%
! TATCTAAATTCTGGTATTGT+AGG - chr3_4:80727229-80727248 Msa0526700:intron 25.0%
!! GCGAAAAATGTTTGTTTTTC+AGG - chr3_4:80725841-80725860 Msa0526700:CDS 30.0%
AAATGCATCAAACAACCAAA+AGG + chr3_4:80725977-80725996 None:intergenic 30.0%
! TTTGGTTGTTTGATGCATTT+TGG - chr3_4:80725977-80725996 Msa0526700:intron 30.0%
AAGCACTACAACAAAGATTT+CGG - chr3_4:80726106-80726125 Msa0526700:intron 30.0%
CAAAAGGACCATATATGTTA+TGG + chr3_4:80726156-80726175 None:intergenic 30.0%
! CATAACATATATGGTCCTTT+TGG - chr3_4:80726154-80726173 Msa0526700:intron 30.0%
AAGCAACAAACTCATTACAT+CGG + chr3_4:80726278-80726297 None:intergenic 30.0%
! TACAGACAAATTTGAGATGT+GGG - chr3_4:80726357-80726376 Msa0526700:CDS 30.0%
ATTGCATAAATGACATTGAG+AGG - chr3_4:80726662-80726681 Msa0526700:intron 30.0%
! TTTTAGTATCCGTAATTGGT+TGG - chr3_4:80726704-80726723 Msa0526700:intron 30.0%
TTTAGTATCCGTAATTGGTT+GGG - chr3_4:80726705-80726724 Msa0526700:intron 30.0%
TCATCACTTCCAATATTTAC+CGG + chr3_4:80726855-80726874 None:intergenic 30.0%
AAATATTGGAAGTGATGAGA+TGG - chr3_4:80726857-80726876 Msa0526700:CDS 30.0%
TAATAAAAGAGAAACTTGGC+TGG - chr3_4:80726991-80727010 Msa0526700:intron 30.0%
AATAAAAGAGAAACTTGGCT+GGG - chr3_4:80726992-80727011 Msa0526700:intron 30.0%
TATACCTTCAACTTCATTGT+TGG + chr3_4:80727020-80727039 None:intergenic 30.0%
! TCTTCTTTCAGAAAGTGTAA+TGG - chr3_4:80727100-80727119 Msa0526700:CDS 30.0%
TTACAGCAGTATCTAAATTC+TGG - chr3_4:80727220-80727239 Msa0526700:intron 30.0%
TAAATTCTGGTATTGTAGGA+TGG - chr3_4:80727233-80727252 Msa0526700:intron 30.0%
AAATTCTGGTATTGTAGGAT+GGG - chr3_4:80727234-80727253 Msa0526700:intron 30.0%
GATTACATATGTCTGGATTA+AGG - chr3_4:80727262-80727281 Msa0526700:intron 30.0%
GATTAAGGAACAACTTGAAA+GGG - chr3_4:80727277-80727296 Msa0526700:CDS 30.0%
!! GCGAAAAATGTTTGTTTTTC+AGG - chr3_4:80725841-80725860 Msa0526700:CDS 30.0%
AAATGCATCAAACAACCAAA+AGG + chr3_4:80725977-80725996 None:intergenic 30.0%
! TTTGGTTGTTTGATGCATTT+TGG - chr3_4:80725977-80725996 Msa0526700:intron 30.0%
AAGCACTACAACAAAGATTT+CGG - chr3_4:80726106-80726125 Msa0526700:intron 30.0%
CAAAAGGACCATATATGTTA+TGG + chr3_4:80726156-80726175 None:intergenic 30.0%
! CATAACATATATGGTCCTTT+TGG - chr3_4:80726154-80726173 Msa0526700:intron 30.0%
AAGCAACAAACTCATTACAT+CGG + chr3_4:80726278-80726297 None:intergenic 30.0%
! TACAGACAAATTTGAGATGT+GGG - chr3_4:80726357-80726376 Msa0526700:CDS 30.0%
ATTGCATAAATGACATTGAG+AGG - chr3_4:80726662-80726681 Msa0526700:intron 30.0%
! TTTTAGTATCCGTAATTGGT+TGG - chr3_4:80726704-80726723 Msa0526700:intron 30.0%
TTTAGTATCCGTAATTGGTT+GGG - chr3_4:80726705-80726724 Msa0526700:intron 30.0%
TCATCACTTCCAATATTTAC+CGG + chr3_4:80726855-80726874 None:intergenic 30.0%
AAATATTGGAAGTGATGAGA+TGG - chr3_4:80726857-80726876 Msa0526700:CDS 30.0%
TAATAAAAGAGAAACTTGGC+TGG - chr3_4:80726991-80727010 Msa0526700:intron 30.0%
AATAAAAGAGAAACTTGGCT+GGG - chr3_4:80726992-80727011 Msa0526700:intron 30.0%
TATACCTTCAACTTCATTGT+TGG + chr3_4:80727020-80727039 None:intergenic 30.0%
! TCTTCTTTCAGAAAGTGTAA+TGG - chr3_4:80727100-80727119 Msa0526700:CDS 30.0%
TTACAGCAGTATCTAAATTC+TGG - chr3_4:80727220-80727239 Msa0526700:intron 30.0%
TAAATTCTGGTATTGTAGGA+TGG - chr3_4:80727233-80727252 Msa0526700:intron 30.0%
AAATTCTGGTATTGTAGGAT+GGG - chr3_4:80727234-80727253 Msa0526700:intron 30.0%
GATTACATATGTCTGGATTA+AGG - chr3_4:80727262-80727281 Msa0526700:intron 30.0%
GATTAAGGAACAACTTGAAA+GGG - chr3_4:80727277-80727296 Msa0526700:CDS 30.0%
AACTACTAATGTCAGCTTGA+AGG - chr3_4:80725914-80725933 Msa0526700:CDS 35.0%
!!! TATATGGTCCTTTTGGAACA+TGG - chr3_4:80726161-80726180 Msa0526700:intron 35.0%
ATACCTTTCCATGTTCCAAA+AGG + chr3_4:80726172-80726191 None:intergenic 35.0%
!! AGTTTGTTGCTTTGTCATAC+AGG - chr3_4:80726286-80726305 Msa0526700:CDS 35.0%
! CTACAGACAAATTTGAGATG+TGG - chr3_4:80726356-80726375 Msa0526700:CDS 35.0%
! ACAGACAAATTTGAGATGTG+GGG - chr3_4:80726358-80726377 Msa0526700:CDS 35.0%
TTCAACACACTCATCAATGA+AGG + chr3_4:80726410-80726429 None:intergenic 35.0%
TTCATTGATGAGTGTGTTGA+AGG - chr3_4:80726409-80726428 Msa0526700:intron 35.0%
CAGCTCAAACATGAAAAGTT+TGG + chr3_4:80726573-80726592 None:intergenic 35.0%
TTCATGTTTGAGCTGTTCTA+AGG - chr3_4:80726578-80726597 Msa0526700:intron 35.0%
TCATGTTTGAGCTGTTCTAA+GGG - chr3_4:80726579-80726598 Msa0526700:intron 35.0%
TTGGGATAGGGAAAATGATA+CGG - chr3_4:80726723-80726742 Msa0526700:intron 35.0%
TATGATAAGCCCTGACAATT+TGG - chr3_4:80726787-80726806 Msa0526700:intron 35.0%
AACAACAGACCAAATTGTCA+GGG + chr3_4:80726799-80726818 None:intergenic 35.0%
TAACAACAGACCAAATTGTC+AGG + chr3_4:80726800-80726819 None:intergenic 35.0%
TAAGACACAAGAAAGAAGGA+AGG + chr3_4:80727051-80727070 None:intergenic 35.0%
! CACTTTCTGAAAGAAGATGA+AGG + chr3_4:80727097-80727116 None:intergenic 35.0%
GGATTAAGGAACAACTTGAA+AGG - chr3_4:80727276-80727295 Msa0526700:CDS 35.0%
AACTACTAATGTCAGCTTGA+AGG - chr3_4:80725914-80725933 Msa0526700:CDS 35.0%
!!! TATATGGTCCTTTTGGAACA+TGG - chr3_4:80726161-80726180 Msa0526700:intron 35.0%
ATACCTTTCCATGTTCCAAA+AGG + chr3_4:80726172-80726191 None:intergenic 35.0%
!! AGTTTGTTGCTTTGTCATAC+AGG - chr3_4:80726286-80726305 Msa0526700:CDS 35.0%
! CTACAGACAAATTTGAGATG+TGG - chr3_4:80726356-80726375 Msa0526700:CDS 35.0%
! ACAGACAAATTTGAGATGTG+GGG - chr3_4:80726358-80726377 Msa0526700:CDS 35.0%
TTCAACACACTCATCAATGA+AGG + chr3_4:80726410-80726429 None:intergenic 35.0%
TTCATTGATGAGTGTGTTGA+AGG - chr3_4:80726409-80726428 Msa0526700:intron 35.0%
CAGCTCAAACATGAAAAGTT+TGG + chr3_4:80726573-80726592 None:intergenic 35.0%
TTCATGTTTGAGCTGTTCTA+AGG - chr3_4:80726578-80726597 Msa0526700:intron 35.0%
TCATGTTTGAGCTGTTCTAA+GGG - chr3_4:80726579-80726598 Msa0526700:intron 35.0%
TTGGGATAGGGAAAATGATA+CGG - chr3_4:80726723-80726742 Msa0526700:intron 35.0%
TATGATAAGCCCTGACAATT+TGG - chr3_4:80726787-80726806 Msa0526700:intron 35.0%
AACAACAGACCAAATTGTCA+GGG + chr3_4:80726799-80726818 None:intergenic 35.0%
TAACAACAGACCAAATTGTC+AGG + chr3_4:80726800-80726819 None:intergenic 35.0%
TAAGACACAAGAAAGAAGGA+AGG + chr3_4:80727051-80727070 None:intergenic 35.0%
! CACTTTCTGAAAGAAGATGA+AGG + chr3_4:80727097-80727116 None:intergenic 35.0%
GGATTAAGGAACAACTTGAA+AGG - chr3_4:80727276-80727295 Msa0526700:CDS 35.0%
TTTAGCCACAAGATGCGTAT+GGG - chr3_4:80726053-80726072 Msa0526700:intron 40.0%
GGGAGGTTCCATAACATATA+TGG - chr3_4:80726145-80726164 Msa0526700:intron 40.0%
!! TTGTTGCTTTGTCATACAGG+TGG - chr3_4:80726289-80726308 Msa0526700:CDS 40.0%
! AAATTTGAGATGTGGGGAGA+TGG - chr3_4:80726364-80726383 Msa0526700:CDS 40.0%
! AGTGTGTTGAAGGTGTACTT+AGG - chr3_4:80726419-80726438 Msa0526700:intron 40.0%
! TGTTGAAGGTGTACTTAGGT+AGG - chr3_4:80726423-80726442 Msa0526700:intron 40.0%
TCTTGGCTGATTGTTTGGTT+TGG - chr3_4:80726446-80726465 Msa0526700:intron 40.0%
! TGTTGATTGAGTGAGCTAAC+TGG + chr3_4:80726640-80726659 None:intergenic 40.0%
TATCCGTAATTGGTTGGGAT+AGG - chr3_4:80726710-80726729 Msa0526700:intron 40.0%
ATCCGTAATTGGTTGGGATA+GGG - chr3_4:80726711-80726730 Msa0526700:intron 40.0%
TTCCCTATCCCAACCAATTA+CGG + chr3_4:80726716-80726735 None:intergenic 40.0%
!!! TGAGATCGTTCTTGGTTTTG+AGG - chr3_4:80726899-80726918 Msa0526700:CDS 40.0%
ACTCCTATACATCACATTCC+TGG - chr3_4:80726930-80726949 Msa0526700:intron 40.0%
AGAAGATGAAGGAGCCAAAT+TGG + chr3_4:80727086-80727105 None:intergenic 40.0%
GGTCTTGATACATCAGGATA+CGG - chr3_4:80727311-80727330 Msa0526700:CDS 40.0%
TTTAGCCACAAGATGCGTAT+GGG - chr3_4:80726053-80726072 Msa0526700:intron 40.0%
GGGAGGTTCCATAACATATA+TGG - chr3_4:80726145-80726164 Msa0526700:intron 40.0%
!! TTGTTGCTTTGTCATACAGG+TGG - chr3_4:80726289-80726308 Msa0526700:CDS 40.0%
! AAATTTGAGATGTGGGGAGA+TGG - chr3_4:80726364-80726383 Msa0526700:CDS 40.0%
! AGTGTGTTGAAGGTGTACTT+AGG - chr3_4:80726419-80726438 Msa0526700:intron 40.0%
! TGTTGAAGGTGTACTTAGGT+AGG - chr3_4:80726423-80726442 Msa0526700:intron 40.0%
TCTTGGCTGATTGTTTGGTT+TGG - chr3_4:80726446-80726465 Msa0526700:intron 40.0%
! TGTTGATTGAGTGAGCTAAC+TGG + chr3_4:80726640-80726659 None:intergenic 40.0%
TATCCGTAATTGGTTGGGAT+AGG - chr3_4:80726710-80726729 Msa0526700:intron 40.0%
ATCCGTAATTGGTTGGGATA+GGG - chr3_4:80726711-80726730 Msa0526700:intron 40.0%
TTCCCTATCCCAACCAATTA+CGG + chr3_4:80726716-80726735 None:intergenic 40.0%
!!! TGAGATCGTTCTTGGTTTTG+AGG - chr3_4:80726899-80726918 Msa0526700:CDS 40.0%
ACTCCTATACATCACATTCC+TGG - chr3_4:80726930-80726949 Msa0526700:intron 40.0%
AGAAGATGAAGGAGCCAAAT+TGG + chr3_4:80727086-80727105 None:intergenic 40.0%
GGTCTTGATACATCAGGATA+CGG - chr3_4:80727311-80727330 Msa0526700:CDS 40.0%
AGGGTAGATACAAGCACTTG+AGG + chr3_4:80725877-80725896 None:intergenic 45.0%
!! GGTTTGTTCGCGATTCCTTT+TGG - chr3_4:80725959-80725978 Msa0526700:intron 45.0%
GTTTAGCCACAAGATGCGTA+TGG - chr3_4:80726052-80726071 Msa0526700:intron 45.0%
TGTTATGGAACCTCCCAATG+CGG + chr3_4:80726141-80726160 None:intergenic 45.0%
!!! GGTCCTTTTGGAACATGGAA+AGG - chr3_4:80726166-80726185 Msa0526700:intron 45.0%
TGCTTTGTCATACAGGTGGA+AGG - chr3_4:80726293-80726312 Msa0526700:CDS 45.0%
GCTTTGTCATACAGGTGGAA+GGG - chr3_4:80726294-80726313 Msa0526700:CDS 45.0%
AGGTGTACTTAGGTAGGTCT+TGG - chr3_4:80726429-80726448 Msa0526700:intron 45.0%
GTAGGTCTTGGCTGATTGTT+TGG - chr3_4:80726441-80726460 Msa0526700:intron 45.0%
!! TTCCAATATTTACCGGCTCG+CGG + chr3_4:80726848-80726867 None:intergenic 45.0%
GATGGTCAGCATGAATGAGA+TGG - chr3_4:80726875-80726894 Msa0526700:CDS 45.0%
GGCTCCAACAATGAAGTTGA+AGG - chr3_4:80727013-80727032 Msa0526700:intron 45.0%
GGCTGAGGATTACATATGTC+TGG - chr3_4:80727255-80727274 Msa0526700:intron 45.0%
GGAACAACTTGAAAGGGAGA+AGG - chr3_4:80727283-80727302 Msa0526700:CDS 45.0%
GCTCAAGGTCTTGATACATC+AGG - chr3_4:80727305-80727324 Msa0526700:CDS 45.0%
AGGATACGGCTCATCAAAAG+TGG - chr3_4:80727325-80727344 Msa0526700:CDS 45.0%
AGGGTAGATACAAGCACTTG+AGG + chr3_4:80725877-80725896 None:intergenic 45.0%
!! GGTTTGTTCGCGATTCCTTT+TGG - chr3_4:80725959-80725978 Msa0526700:intron 45.0%
GTTTAGCCACAAGATGCGTA+TGG - chr3_4:80726052-80726071 Msa0526700:intron 45.0%
TGTTATGGAACCTCCCAATG+CGG + chr3_4:80726141-80726160 None:intergenic 45.0%
!!! GGTCCTTTTGGAACATGGAA+AGG - chr3_4:80726166-80726185 Msa0526700:intron 45.0%
TGCTTTGTCATACAGGTGGA+AGG - chr3_4:80726293-80726312 Msa0526700:CDS 45.0%
GCTTTGTCATACAGGTGGAA+GGG - chr3_4:80726294-80726313 Msa0526700:CDS 45.0%
AGGTGTACTTAGGTAGGTCT+TGG - chr3_4:80726429-80726448 Msa0526700:intron 45.0%
GTAGGTCTTGGCTGATTGTT+TGG - chr3_4:80726441-80726460 Msa0526700:intron 45.0%
!! TTCCAATATTTACCGGCTCG+CGG + chr3_4:80726848-80726867 None:intergenic 45.0%
GATGGTCAGCATGAATGAGA+TGG - chr3_4:80726875-80726894 Msa0526700:CDS 45.0%
GGCTCCAACAATGAAGTTGA+AGG - chr3_4:80727013-80727032 Msa0526700:intron 45.0%
GGCTGAGGATTACATATGTC+TGG - chr3_4:80727255-80727274 Msa0526700:intron 45.0%
GGAACAACTTGAAAGGGAGA+AGG - chr3_4:80727283-80727302 Msa0526700:CDS 45.0%
GCTCAAGGTCTTGATACATC+AGG - chr3_4:80727305-80727324 Msa0526700:CDS 45.0%
AGGATACGGCTCATCAAAAG+TGG - chr3_4:80727325-80727344 Msa0526700:CDS 45.0%
GCTTGAAGGAGTCTGATGCA+TGG - chr3_4:80725928-80725947 Msa0526700:CDS 50.0%
AATCGCGAACAAACCTCAGC+AGG + chr3_4:80725954-80725973 None:intergenic 50.0%
TCTAGCCCATACGCATCTTG+TGG + chr3_4:80726061-80726080 None:intergenic 50.0%
GCTAGAGAAGCTTGCAACAG+AGG - chr3_4:80726075-80726094 Msa0526700:intron 50.0%
! TTCGGAATTGAGTGCCGCAT+TGG - chr3_4:80726124-80726143 Msa0526700:intron 50.0%
! TCGGAATTGAGTGCCGCATT+GGG - chr3_4:80726125-80726144 Msa0526700:intron 50.0%
TCATACAGGTGGAAGGGAGA+AGG - chr3_4:80726300-80726319 Msa0526700:CDS 50.0%
!!! AGGCTCCTGCTGCTTTTTGT+CGG - chr3_4:80726320-80726339 Msa0526700:CDS 50.0%
GCTTTCCGACAAAAAGCAGC+AGG + chr3_4:80726328-80726347 None:intergenic 50.0%
TAAATCCGATTTCCGCGAGC+CGG - chr3_4:80726833-80726852 Msa0526700:CDS 50.0%
!! ATTTACCGGCTCGCGGAAAT+CGG + chr3_4:80726841-80726860 None:intergenic 50.0%
TTCCGCGAGCCGGTAAATAT+TGG - chr3_4:80726843-80726862 Msa0526700:CDS 50.0%
GAGATGGCTGAGATCGTTCT+TGG - chr3_4:80726891-80726910 Msa0526700:CDS 50.0%
GGGCCAGGAATGTGATGTAT+AGG + chr3_4:80726936-80726955 None:intergenic 50.0%
!! TGGTATTGTAGGATGGGCTG+AGG - chr3_4:80727240-80727259 Msa0526700:intron 50.0%
CTTGAAAGGGAGAAGGCTCA+AGG - chr3_4:80727290-80727309 Msa0526700:CDS 50.0%
CGAAGTGAGCCTAATTGGAC+CGG + chr3_4:80727365-80727384 None:intergenic 50.0%
CGGTCCAATTAGGCTCACTT+CGG - chr3_4:80727363-80727382 Msa0526700:CDS 50.0%
GGTCCAATTAGGCTCACTTC+GGG - chr3_4:80727364-80727383 Msa0526700:CDS 50.0%
GCTTGAAGGAGTCTGATGCA+TGG - chr3_4:80725928-80725947 Msa0526700:CDS 50.0%
AATCGCGAACAAACCTCAGC+AGG + chr3_4:80725954-80725973 None:intergenic 50.0%
TCTAGCCCATACGCATCTTG+TGG + chr3_4:80726061-80726080 None:intergenic 50.0%
GCTAGAGAAGCTTGCAACAG+AGG - chr3_4:80726075-80726094 Msa0526700:intron 50.0%
! TTCGGAATTGAGTGCCGCAT+TGG - chr3_4:80726124-80726143 Msa0526700:intron 50.0%
! TCGGAATTGAGTGCCGCATT+GGG - chr3_4:80726125-80726144 Msa0526700:intron 50.0%
TCATACAGGTGGAAGGGAGA+AGG - chr3_4:80726300-80726319 Msa0526700:CDS 50.0%
!!! AGGCTCCTGCTGCTTTTTGT+CGG - chr3_4:80726320-80726339 Msa0526700:CDS 50.0%
GCTTTCCGACAAAAAGCAGC+AGG + chr3_4:80726328-80726347 None:intergenic 50.0%
TAAATCCGATTTCCGCGAGC+CGG - chr3_4:80726833-80726852 Msa0526700:CDS 50.0%
!! ATTTACCGGCTCGCGGAAAT+CGG + chr3_4:80726841-80726860 None:intergenic 50.0%
TTCCGCGAGCCGGTAAATAT+TGG - chr3_4:80726843-80726862 Msa0526700:CDS 50.0%
GAGATGGCTGAGATCGTTCT+TGG - chr3_4:80726891-80726910 Msa0526700:CDS 50.0%
GGGCCAGGAATGTGATGTAT+AGG + chr3_4:80726936-80726955 None:intergenic 50.0%
!! TGGTATTGTAGGATGGGCTG+AGG - chr3_4:80727240-80727259 Msa0526700:intron 50.0%
CTTGAAAGGGAGAAGGCTCA+AGG - chr3_4:80727290-80727309 Msa0526700:CDS 50.0%
CGAAGTGAGCCTAATTGGAC+CGG + chr3_4:80727365-80727384 None:intergenic 50.0%
CGGTCCAATTAGGCTCACTT+CGG - chr3_4:80727363-80727382 Msa0526700:CDS 50.0%
GGTCCAATTAGGCTCACTTC+GGG - chr3_4:80727364-80727383 Msa0526700:CDS 50.0%
! GAATTGAGTGCCGCATTGGG+AGG - chr3_4:80726128-80726147 Msa0526700:intron 55.0%
ACATCACATTCCTGGCCCAG+AGG - chr3_4:80726938-80726957 Msa0526700:intron 55.0%
CATCACATTCCTGGCCCAGA+GGG - chr3_4:80726939-80726958 Msa0526700:intron 55.0%
TACGACCACGAACACCCTCT+GGG + chr3_4:80726956-80726975 None:intergenic 55.0%
TTACGACCACGAACACCCTC+TGG + chr3_4:80726957-80726976 None:intergenic 55.0%
AGTGGTGCAAACCCAAGCAC+CGG - chr3_4:80727343-80727362 Msa0526700:CDS 55.0%
!! ACCCAAGCACCGGTCCAATT+AGG - chr3_4:80727353-80727372 Msa0526700:CDS 55.0%
GCCTAATTGGACCGGTGCTT+GGG + chr3_4:80727357-80727376 None:intergenic 55.0%
AGCCTAATTGGACCGGTGCT+TGG + chr3_4:80727358-80727377 None:intergenic 55.0%
CTGCCCGAAGTGAGCCTAAT+TGG + chr3_4:80727370-80727389 None:intergenic 55.0%
! GAATTGAGTGCCGCATTGGG+AGG - chr3_4:80726128-80726147 Msa0526700:intron 55.0%
ACATCACATTCCTGGCCCAG+AGG - chr3_4:80726938-80726957 Msa0526700:intron 55.0%
CATCACATTCCTGGCCCAGA+GGG - chr3_4:80726939-80726958 Msa0526700:intron 55.0%
TACGACCACGAACACCCTCT+GGG + chr3_4:80726956-80726975 None:intergenic 55.0%
TTACGACCACGAACACCCTC+TGG + chr3_4:80726957-80726976 None:intergenic 55.0%
AGTGGTGCAAACCCAAGCAC+CGG - chr3_4:80727343-80727362 Msa0526700:CDS 55.0%
!! ACCCAAGCACCGGTCCAATT+AGG - chr3_4:80727353-80727372 Msa0526700:CDS 55.0%
GCCTAATTGGACCGGTGCTT+GGG + chr3_4:80727357-80727376 None:intergenic 55.0%
AGCCTAATTGGACCGGTGCT+TGG + chr3_4:80727358-80727377 None:intergenic 55.0%
CTGCCCGAAGTGAGCCTAAT+TGG + chr3_4:80727370-80727389 None:intergenic 55.0%
GTCTGATGCATGGCCTGCTG+AGG - chr3_4:80725938-80725957 Msa0526700:CDS 60.0%
GTCTGATGCATGGCCTGCTG+AGG - chr3_4:80725938-80725957 Msa0526700:CDS 60.0%
GGCTCACTTCGGGCAGCAGA+CGG - chr3_4:80727374-80727393 Msa0526700:CDS 65.0%
GGCTCACTTCGGGCAGCAGA+CGG - chr3_4:80727374-80727393 Msa0526700:CDS 65.0%
CCACGAACACCCTCTGGGCC+AGG + chr3_4:80726951-80726970 None:intergenic 70.0%
!! CCTGGCCCAGAGGGTGTTCG+TGG - chr3_4:80726948-80726967 Msa0526700:intron 70.0%
CCACGAACACCCTCTGGGCC+AGG + chr3_4:80726951-80726970 None:intergenic 70.0%
!! CCTGGCCCAGAGGGTGTTCG+TGG - chr3_4:80726948-80726967 Msa0526700:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 80725816 80727412 80725816 ID=Msa0526700;Name=Msa0526700
chr3_4 mRNA 80725816 80727412 80725816 ID=Msa0526700-mRNA-1;Parent=Msa0526700;Name=Msa0526700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|5|0|258
chr3_4 exon 80727269 80727412 80727269 ID=Msa0526700-mRNA-1:exon:24290;Parent=Msa0526700-mRNA-1
chr3_4 exon 80727041 80727170 80727041 ID=Msa0526700-mRNA-1:exon:24289;Parent=Msa0526700-mRNA-1
chr3_4 exon 80726788 80726920 80726788 ID=Msa0526700-mRNA-1:exon:24288;Parent=Msa0526700-mRNA-1
chr3_4 exon 80726194 80726401 80726194 ID=Msa0526700-mRNA-1:exon:24287;Parent=Msa0526700-mRNA-1
chr3_4 exon 80725816 80725977 80725816 ID=Msa0526700-mRNA-1:exon:24286;Parent=Msa0526700-mRNA-1
chr3_4 CDS 80727269 80727412 80727269 ID=Msa0526700-mRNA-1:cds;Parent=Msa0526700-mRNA-1
chr3_4 CDS 80727041 80727170 80727041 ID=Msa0526700-mRNA-1:cds;Parent=Msa0526700-mRNA-1
chr3_4 CDS 80726788 80726920 80726788 ID=Msa0526700-mRNA-1:cds;Parent=Msa0526700-mRNA-1
chr3_4 CDS 80726194 80726401 80726194 ID=Msa0526700-mRNA-1:cds;Parent=Msa0526700-mRNA-1
chr3_4 CDS 80725816 80725977 80725816 ID=Msa0526700-mRNA-1:cds;Parent=Msa0526700-mRNA-1
Gene Sequence

>Msa0526700

ATGATGTACTTTACTCAAGCCAATTGCGAAAAATGTTTGTTTTTCAGGTTCTTCTATGCCTCAAGTGCTTGTATCTACCCTGAATTTAAACAGTTAGAAACTACTAATGTCAGCTTGAAGGAGTCTGATGCATGGCCTGCTGAGCCACAAGATGCGTATGGGCTAGAGAAGCTTGCAACAGAGGAGATTTGCAAGCACTACAACAAAGATTTCGGAATTGAGTGCCGCATTGGGAGGTTCCATAACATATATGGTCCTTTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGGAAAGCAATCACGTCTACAGACAAATTTGAGATGTGGGGAGATGGTTTGCAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTACTTAGACTGACTAAATCCGATTTCCGCGAGCCGGTAAATATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATCGTTCTTGGTTTTGAGGACAAGAAGACTCCTATACATCACATTCCTGGCCCAGAGGGTGTTCGTGGTCGTAATTCAGACAATACACTAATAAAAGAGAAACTTGGCTGGGCTCCAACAATGAAGTTGAAGGATGGGCTGAGGATTACATATGTCTGGATTAAGGAACAACTTGAAAGGGAGAAGGCTCAAGGTCTTGATACATCAGGATACGGCTCATCAAAAGTGGTGCAAACCCAAGCACCGGTCCAATTAGGCTCACTTCGGGCAGCAGACGGCAAAGAGAGTAGTTAA

Protein sequence

>Msa0526700

MMYFTQANCEKCLFFRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEEICKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAITSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLGFEDKKTPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYVWIKEQLEREKAQGLDTSGYGSSKVVQTQAPVQLGSLRAADGKESS*