AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0354970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354970 MtrunA17_Chr3g0091571 98.333 480 8 0 1 480 1 480 0.0 970
Msa0354970 MtrunA17_Chr7g0228421 44.737 76 40 2 186 260 154 228 5.11e-16 79.7
Msa0354970 MtrunA17_Chr3g0142061 31.461 178 111 3 288 465 95 261 6.36e-16 78.2
Msa0354970 MtrunA17_Chr8g0377881 37.838 74 44 2 188 260 22 94 4.47e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354970 AT1G18660.1 65.042 472 161 4 11 480 17 486 0.0 645
Msa0354970 AT1G18660.2 65.042 472 161 4 11 480 17 486 0.0 645
Msa0354970 AT1G18660.3 65.042 472 161 4 11 480 17 486 0.0 645
Msa0354970 AT1G18660.4 64.130 460 161 4 11 468 17 474 0.0 617
Msa0354970 AT1G75460.1 33.702 181 102 5 288 465 87 252 4.10e-17 82.0
Msa0354970 AT1G19740.1 34.463 177 104 4 289 465 88 252 2.36e-16 79.7
Msa0354970 AT3G27330.1 39.024 82 48 2 186 266 720 800 4.15e-13 72.4

Find 149 sgRNAs with CRISPR-Local

Find 563 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCGGGATGTTATTCTTTC+TGG 0.064031 3_1:-28523563 Msa0354970:CDS
ATCACTAGATTTGATGTTAT+TGG 0.166078 3_1:+28525110 None:intergenic
ATATTCTTTGGCTTCATAAA+TGG 0.217287 3_1:-28518944 Msa0354970:three_prime_UTR
CTAGCCATTCAAATATTCTT+TGG 0.260012 3_1:-28518956 Msa0354970:three_prime_UTR
TCTCTTTCCTTTGTCCCTTC+TGG 0.260718 3_1:+28520329 None:intergenic
TAAATCAGATTGTGAATAAA+AGG 0.262548 3_1:+28518847 None:intergenic
TCACCTAATTGAACATGTTC+TGG 0.282932 3_1:+28523046 None:intergenic
TGAACCTCGTTATAGACTTA+TGG 0.288842 3_1:-28522297 Msa0354970:intron
GCTTGTACAAAAGGGAAATT+TGG 0.299572 3_1:-28526239 Msa0354970:CDS
TCCATGTGTATTAGAACAAT+TGG 0.305577 3_1:+28518881 None:intergenic
GAAGGCTAATGCTCTTCTTC+TGG 0.306462 3_1:-28524673 Msa0354970:intron
GTGAATGTGCAATACCTAAA+AGG 0.312618 3_1:+28523527 None:intergenic
GCCCCAGAACATGTTCAATT+AGG 0.331905 3_1:-28523049 Msa0354970:intron
ATGATCTATGCATTAAATAT+TGG 0.333748 3_1:+28524912 None:intergenic
GATTTCGCAACCTCCGTTCT+TGG 0.338175 3_1:-28520495 Msa0354970:CDS
ACAGGTTCATTAGCAGAGTT+TGG 0.343388 3_1:-28521314 Msa0354970:CDS
ATCGAAGTGCAGCTTATATT+AGG 0.345900 3_1:-28525071 Msa0354970:intron
AGGAACGTTACCATTACTAT+TGG 0.359025 3_1:-28519008 Msa0354970:three_prime_UTR
ACAGTATCATCTAGTTCAAC+TGG 0.363109 3_1:-28523332 Msa0354970:CDS
AAAACAGGTAAGAAGAATAA+TGG 0.364926 3_1:-28521486 Msa0354970:intron
CTTCGATTGCCGAGGATGAT+TGG 0.368141 3_1:+28525087 None:intergenic
TTGGTTTGGTTGCAGGATAA+TGG 0.370188 3_1:-28526304 Msa0354970:intron
CGACGTCGACGACTACGTTT+TGG 0.374689 3_1:-28528415 Msa0354970:intron
ACCCGGAATATTCATTGAAA+AGG 0.374773 3_1:-28528657 None:intergenic
CGAGGTTCAAATATATTTAG+TGG 0.376203 3_1:+28522311 None:intergenic
TTCATGTCTATTTCAGTCAA+TGG 0.382042 3_1:-28523201 Msa0354970:CDS
ATTTCGCAACCTCCGTTCTT+GGG 0.404243 3_1:-28520494 Msa0354970:CDS
TCTATATAAAAGCGACCATC+TGG 0.406073 3_1:+28521133 None:intergenic
GTGTCCCATGACAATCCTTC+TGG 0.406472 3_1:+28526280 None:intergenic
TAGAATGAAGAGAAGAAGGT+TGG 0.409136 3_1:+28528552 None:intergenic
ACCATTTCAGCTGGGTTTGA+AGG 0.425497 3_1:-28524748 Msa0354970:intron
GAGAAACTCGTGAATGTTGA+AGG 0.427907 3_1:-28519530 Msa0354970:CDS
ATCATGTAGTAATTCCCTTC+GGG 0.432755 3_1:-28523375 Msa0354970:intron
CACCTAATTGAACATGTTCT+GGG 0.434320 3_1:+28523047 None:intergenic
CCCGGAATATTCATTGAAAA+GGG 0.434805 3_1:-28528656 Msa0354970:five_prime_UTR
TGTTTACGAGCTTGTACAAA+AGG 0.436112 3_1:-28526248 Msa0354970:CDS
GTTATAATAGATGCTTCAAC+AGG 0.438756 3_1:-28521332 Msa0354970:CDS
ATTTCCCATTCTACCCTCAA+TGG 0.443982 3_1:-28528463 Msa0354970:exon
CATGATTATGTACAGATTGA+AGG 0.446466 3_1:-28520526 Msa0354970:intron
GCAGAACTGTCCTGCACAAT+GGG 0.462841 3_1:+28523078 None:intergenic
AAAGGTATCGTGTTCGCCCC+TGG 0.464172 3_1:+28528576 None:intergenic
AGTGGCCATTGAGGGTAGAA+TGG 0.466237 3_1:+28528458 None:intergenic
TTCCTTTCAGCATATTCCTC+TGG 0.469774 3_1:+28522419 None:intergenic
TATCATGTAGTAATTCCCTT+CGG 0.471872 3_1:-28523376 Msa0354970:intron
GTCGTCGACGTCGAGAGAAT+CGG 0.472876 3_1:+28528425 None:intergenic
GAAGCCAAAGAATATTTGAA+TGG 0.475786 3_1:+28518952 None:intergenic
AATCTGATTTATACAAATGT+TGG 0.476503 3_1:-28518835 Msa0354970:three_prime_UTR
CCTCTGCTCGAAGAAATATC+AGG 0.480531 3_1:+28519064 None:intergenic
CCATGTGTATTAGAACAATT+GGG 0.481217 3_1:+28518882 None:intergenic
GCATTAGCCTTCAAAAGGTA+TGG 0.481312 3_1:+28524684 None:intergenic
TCGTAGGCCTTCAGAAAGAT+TGG 0.481468 3_1:-28519347 Msa0354970:CDS
GAAGAGCATTAGCCTTCAAA+AGG 0.485021 3_1:+28524679 None:intergenic
TTCCATTCTGTTGTCTCGAA+AGG 0.487885 3_1:+28526216 None:intergenic
TTATTAGAATGAAGAGAAGA+AGG 0.495033 3_1:+28528548 None:intergenic
TGCAGAAGTTGAATGGATAC+AGG 0.501411 3_1:-28520363 Msa0354970:CDS
GAAGAGAAGAAGGTTGGAAA+AGG 0.501800 3_1:+28528558 None:intergenic
ATCGTGTTGCAGAAGTTGAA+TGG 0.503817 3_1:-28520370 Msa0354970:CDS
ATTTAGTGGAAACCTTTGAC+AGG 0.504501 3_1:+28522325 None:intergenic
TAGAGAAATATGACGTGGCT+CGG 0.506027 3_1:-28523580 Msa0354970:CDS
GGAACAGATGCCCATTGTGC+AGG 0.506693 3_1:-28523088 Msa0354970:CDS
ACATACTTCGGCAAGTGTTG+TGG 0.508681 3_1:+28524850 None:intergenic
GTGTATGAAATGAAGCATCC+AGG 0.512551 3_1:-28528594 Msa0354970:five_prime_UTR
AGAGAAATATGACGTGGCTC+GGG 0.522480 3_1:-28523579 Msa0354970:CDS
CATACTTCGGCAAGTGTTGT+GGG 0.526024 3_1:+28524851 None:intergenic
GCGCTCCGGGTCTCTTAATG+AGG 0.526339 3_1:+28519499 None:intergenic
GGAGGTTGAGTGGCCATTGA+GGG 0.527230 3_1:+28528450 None:intergenic
CTGAAGGCCTACGATTCGAG+AGG 0.527619 3_1:+28519356 None:intergenic
CAGGTTCATACAGTAACTTC+AGG 0.528524 3_1:+28523255 None:intergenic
GTTTACGAGCTTGTACAAAA+GGG 0.530579 3_1:-28526247 Msa0354970:CDS
CTTTCCTTTGTCCCTTCTGG+CGG 0.530881 3_1:+28520332 None:intergenic
CAGCAGAAAGTGCTCGAACA+TGG 0.534893 3_1:-28519691 Msa0354970:CDS
CTCCGTTCTTGGGATCAAGA+TGG 0.535243 3_1:-28520484 Msa0354970:CDS
GTGGCCATTGAGGGTAGAAT+GGG 0.539239 3_1:+28528459 None:intergenic
TCCGTTCTTGGGATCAAGAT+GGG 0.539331 3_1:-28520483 Msa0354970:intron
TCGCTACCCTCTCGAATCGT+AGG 0.543915 3_1:-28519363 Msa0354970:CDS
TCAAAGTCATCATTCCGCTC+TGG 0.550649 3_1:+28523290 None:intergenic
TTCATAAATGGCTGTTCATG+AGG 0.551824 3_1:-28518932 Msa0354970:three_prime_UTR
ATGTTGTCTTACCCTGTCAA+AGG 0.552440 3_1:-28522337 Msa0354970:CDS
GAAAGTGCTCGAACATGGAT+AGG 0.552863 3_1:-28519686 Msa0354970:CDS
TATTCAAATTCCAATAGTAA+TGG 0.554157 3_1:+28518998 None:intergenic
CCCAATTGTTCTAATACACA+TGG 0.555750 3_1:-28518882 Msa0354970:three_prime_UTR
AATTATTATGAGGACACGCT+AGG 0.558508 3_1:-28518796 Msa0354970:three_prime_UTR
GAAGGATGCTGCAAAGCTTG+TGG 0.558715 3_1:-28524730 Msa0354970:CDS
TAAAAGCGACCATCTGGAAG+TGG 0.562223 3_1:+28521139 None:intergenic
GTGGGATCAAGCCCACTCAA+TGG 0.562899 3_1:+28524869 None:intergenic
AGCAGAGTTTGGCTGTGAAG+TGG 0.562998 3_1:-28521303 Msa0354970:CDS
AATGACAGTTTAGTCAACAT+TGG 0.563013 3_1:-28522389 Msa0354970:CDS
CATCATCATCCTCAGAACAT+AGG 0.564721 3_1:-28524892 Msa0354970:CDS
TCGAGACAACAGAATGGAAG+AGG 0.566392 3_1:-28526212 Msa0354970:intron
TGTGTGTGAAGAGAAGATTA+AGG 0.570548 3_1:+28528519 None:intergenic
AGGCAATCATCGGATGGGAA+TGG 0.572561 3_1:-28521462 Msa0354970:intron
AATGGAAGGCAATCATCGGA+TGG 0.575328 3_1:-28521468 Msa0354970:CDS
CAGGATATTATGCCGCCAGA+AGG 0.576127 3_1:-28520344 Msa0354970:CDS
AGGAGGTTGAGTGGCCATTG+AGG 0.577583 3_1:+28528449 None:intergenic
GAATAATGGAAGGCAATCAT+CGG 0.577826 3_1:-28521472 Msa0354970:CDS
ACGGCAAAATGAATGTCCAC+AGG 0.579195 3_1:+28523223 None:intergenic
CCTGATATTTCTTCGAGCAG+AGG 0.586318 3_1:-28519064 Msa0354970:CDS
TGTATGAAATGAAGCATCCA+GGG 0.586620 3_1:-28528593 Msa0354970:five_prime_UTR
AGCAGAACTGTCCTGCACAA+TGG 0.587723 3_1:+28523077 None:intergenic
CTCTTTGAAGACATTCCCGA+AGG 0.588174 3_1:+28523360 None:intergenic
CGGCAAAATGAATGTCCACA+GGG 0.593265 3_1:+28523224 None:intergenic
CTGTAGTATCTCTAATGCGT+AGG 0.595814 3_1:+28519320 None:intergenic
AGGATATTATGCCGCCAGAA+GGG 0.596091 3_1:-28520343 Msa0354970:CDS
ATGGACCAGAAGGATTGTCA+TGG 0.596967 3_1:-28526285 Msa0354970:CDS
TTGCAGGATAATGGACCAGA+AGG 0.597081 3_1:-28526295 Msa0354970:intron
GCTAAAGAAGCAGCAAGACA+AGG 0.598996 3_1:-28519659 Msa0354970:intron
TCGGGAATGTCTTCAAAGAG+TGG 0.601467 3_1:-28523357 Msa0354970:CDS
GGCCTTTCGAGACAACAGAA+TGG 0.602857 3_1:-28526218 Msa0354970:CDS
ATGGAAGGCAATCATCGGAT+GGG 0.603310 3_1:-28521467 Msa0354970:CDS
AGAAGGGACAAAGGAAAGAG+AGG 0.605280 3_1:-28520327 Msa0354970:CDS
TTCCAGAGGAATATGCTGAA+AGG 0.606002 3_1:-28522421 Msa0354970:CDS
AGGAGATCCAATCTTTCTGA+AGG 0.606145 3_1:+28519340 None:intergenic
ACCCATCTTGATCCCAAGAA+CGG 0.606671 3_1:+28520482 None:intergenic
TTTCTTCGAGCAGAGGAACA+AGG 0.608043 3_1:-28519057 Msa0354970:CDS
TTTAGTGGAAACCTTTGACA+GGG 0.610286 3_1:+28522326 None:intergenic
AGAATCGGAAGGAGGTTGAG+TGG 0.612077 3_1:+28528440 None:intergenic
TCTAGTGATCCAATCATCCT+CGG 0.612986 3_1:-28525096 Msa0354970:CDS
CGCTCCGGGTCTCTTAATGA+GGG 0.614633 3_1:+28519500 None:intergenic
CAGTATCATCTAGTTCAACT+GGG 0.617318 3_1:-28523331 Msa0354970:CDS
TATGCCGCCAGAAGGGACAA+AGG 0.618241 3_1:-28520336 Msa0354970:CDS
CAGGTAAGAAGAATAATGGA+AGG 0.621017 3_1:-28521482 Msa0354970:CDS
TGGATGCTTCATTTCATACA+CGG 0.621973 3_1:+28528596 None:intergenic
AGGTGTGAGCCACTTCCAGA+TGG 0.625380 3_1:-28521148 Msa0354970:CDS
TGGACCAGAAGGATTGTCAT+GGG 0.629901 3_1:-28526284 Msa0354970:CDS
ATGTACAGATTGAAGGTCGT+AGG 0.631279 3_1:-28520519 Msa0354970:intron
ACTCAATGGCCTATGTTCTG+AGG 0.635518 3_1:+28524883 None:intergenic
ATTGTGAATAAAAGGTAATG+CGG 0.637858 3_1:+28518855 None:intergenic
TCAGAACATAGGCCATTGAG+TGG 0.644909 3_1:-28524881 Msa0354970:CDS
CTATTTCAGTCAATGGATCG+TGG 0.649425 3_1:-28523194 Msa0354970:intron
TGAAGGCCTACGATTCGAGA+GGG 0.654293 3_1:+28519357 None:intergenic
ACGTCGAGAGAATCGGAAGG+AGG 0.657020 3_1:+28528432 None:intergenic
GGCAAAATGAATGTCCACAG+GGG 0.665861 3_1:+28523225 None:intergenic
TCTTTGAAGACATTCCCGAA+GGG 0.670281 3_1:+28523361 None:intergenic
GATACCCTCATTAAGAGACC+CGG 0.673138 3_1:-28519504 Msa0354970:CDS
TTGACTGAAATAGACATGAA+CGG 0.674075 3_1:+28523204 None:intergenic
TCGACGTCGAGAGAATCGGA+AGG 0.674517 3_1:+28528429 None:intergenic
CAGAACATAGGCCATTGAGT+GGG 0.678923 3_1:-28524880 Msa0354970:CDS
ACCTAATTGAACATGTTCTG+GGG 0.682254 3_1:+28523048 None:intergenic
GCAAAATGAATGTCCACAGG+GGG 0.684264 3_1:+28523226 None:intergenic
AAGCTGCACTTCGATTGCCG+AGG 0.702323 3_1:+28525079 None:intergenic
CATACAAAAGAACTTTCCAG+AGG 0.709830 3_1:-28522435 Msa0354970:CDS
TTCTTGTAGAGAATTAGACG+AGG 0.721915 3_1:-28519087 Msa0354970:intron
CATCTTGATCCCAAGAACGG+AGG 0.722655 3_1:+28520485 None:intergenic
GTATGAAATGAAGCATCCAG+GGG 0.736865 3_1:-28528592 Msa0354970:five_prime_UTR
GCAGTTAGAGAAATATGACG+TGG 0.740709 3_1:-28523585 Msa0354970:intron
CTCACCATAAGTCTATAACG+AGG 0.744121 3_1:+28522293 None:intergenic
TATCATCTAGTTCAACTGGG+AGG 0.750577 3_1:-28523328 Msa0354970:CDS
GTACACATGCACAACCAGAG+CGG 0.778485 3_1:-28523304 Msa0354970:CDS
ACGCATTAGAGATACTACAG+AGG 0.789082 3_1:-28519317 Msa0354970:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAATATTATAAAAA+AGG + chr3_1:28526868-28526887 None:intergenic 0.0%
!! AGTTAAAAATAATAAGAAAA+AGG + chr3_1:28520150-28520169 None:intergenic 10.0%
!!! ATTAATACTAACATTTTAAT+CGG + chr3_1:28521446-28521465 None:intergenic 10.0%
!!! TCAATATTTTTCTTTTAAAT+TGG - chr3_1:28522409-28522428 Msa0354970:CDS 10.0%
!!! AAATTTATTTTTTTCTTACT+AGG - chr3_1:28522872-28522891 Msa0354970:intron 10.0%
!! AATATGATGTAAAATTTATT+GGG + chr3_1:28525478-28525497 None:intergenic 10.0%
!! AAATATGATGTAAAATTTAT+TGG + chr3_1:28525479-28525498 None:intergenic 10.0%
!! AATTAAATCTGTAAAAAAAA+TGG + chr3_1:28528246-28528265 None:intergenic 10.0%
!!! TAAAGTTTTTAATTATTATG+AGG - chr3_1:28528641-28528660 Msa0354970:five_prime_UTR 10.0%
!! AAAAAAAAAGAGAGAAAAAA+AGG + chr3_1:28519995-28520014 None:intergenic 15.0%
!!! TCTTTTTTTTTTTTTGTGTA+TGG - chr3_1:28520004-28520023 Msa0354970:intron 15.0%
!!! GAAATCAATTTTTTTTTTTG+TGG + chr3_1:28520630-28520649 None:intergenic 15.0%
!! ATTAAGAAAAAACTATCATT+AGG + chr3_1:28520683-28520702 None:intergenic 15.0%
!! TTAAAATGTTAGTATTAATC+CGG - chr3_1:28521447-28521466 Msa0354970:intron 15.0%
!!! TTTCTAAAACAAAAATATCA+GGG + chr3_1:28522854-28522873 None:intergenic 15.0%
!!! TTTTCTAAAACAAAAATATC+AGG + chr3_1:28522855-28522874 None:intergenic 15.0%
!! AAGGAATAATTACTAAATTT+GGG + chr3_1:28524556-28524575 None:intergenic 15.0%
!!! AATTTTGAGCTATAAATAAA+TGG + chr3_1:28525712-28525731 None:intergenic 15.0%
!! ATATAACTTAAACAAGAAAA+TGG + chr3_1:28526038-28526057 None:intergenic 15.0%
!!! TGAATTTTTTTCTCAAAAAA+AGG + chr3_1:28527262-28527281 None:intergenic 15.0%
!! AATAGTTATTGGTATTAATA+GGG + chr3_1:28527345-28527364 None:intergenic 15.0%
!! AAATAGTTATTGGTATTAAT+AGG + chr3_1:28527346-28527365 None:intergenic 15.0%
!! TTAATTAAATAAACCTAGTA+AGG - chr3_1:28528260-28528279 Msa0354970:intron 15.0%
!!! AACATATACTTAGTTTTGTT+TGG - chr3_1:28519277-28519296 Msa0354970:intron 20.0%
!!! AGGTTTTGGTTAAAAAAAAA+AGG + chr3_1:28519590-28519609 None:intergenic 20.0%
!!! AGAAGTATTTAATTGATTCT+AGG - chr3_1:28519742-28519761 Msa0354970:intron 20.0%
!! CGTATTAAACAATCAATTTA+AGG + chr3_1:28519779-28519798 None:intergenic 20.0%
!! TACGTAAATATGTGTTTAAA+CGG - chr3_1:28519795-28519814 Msa0354970:intron 20.0%
!! GTTATAGAATATATGGTTAT+TGG - chr3_1:28519888-28519907 Msa0354970:intron 20.0%
!!! ATCAATTTTTTTTTTTGTGG+TGG + chr3_1:28520627-28520646 None:intergenic 20.0%
!!! AAACAAATAAACATTTTCTC+TGG - chr3_1:28521109-28521128 Msa0354970:intron 20.0%
!!! AACAAATAAACATTTTCTCT+GGG - chr3_1:28521110-28521129 Msa0354970:intron 20.0%
!!! AAAATAGTGTGCTTTATTTT+TGG - chr3_1:28521263-28521282 Msa0354970:intron 20.0%
!! AAAAGAATAAAAAATGTTGC+TGG + chr3_1:28521346-28521365 None:intergenic 20.0%
!! AGATTCATTAACTTATGAAA+TGG - chr3_1:28521597-28521616 Msa0354970:intron 20.0%
!!! TAGCTTTATGTCAAAAATTT+GGG - chr3_1:28521644-28521663 Msa0354970:intron 20.0%
!!! CAGTATTTTTTTGCTATAAT+TGG - chr3_1:28521896-28521915 Msa0354970:intron 20.0%
!! AACTATATATGTAATGCTTA+TGG + chr3_1:28521994-28522013 None:intergenic 20.0%
!!! TGTTCACTTTTTTTTTTTTG+TGG - chr3_1:28522088-28522107 Msa0354970:intron 20.0%
!! CTTTATAAAATTCTACAAGT+AGG + chr3_1:28522205-28522224 None:intergenic 20.0%
!! ATGATCTATGCATTAAATAT+TGG + chr3_1:28522538-28522557 None:intergenic 20.0%
!!! TTCTAAAACAAAAATATCAG+GGG + chr3_1:28522853-28522872 None:intergenic 20.0%
!!! TTTATTTTTTTCTTACTAGG+TGG - chr3_1:28522875-28522894 Msa0354970:intron 20.0%
!!! TTATTTTTTTCTTACTAGGT+GGG - chr3_1:28522876-28522895 Msa0354970:intron 20.0%
!!! TAGTTCTAATACTTTTGAAT+AGG - chr3_1:28523343-28523362 Msa0354970:CDS 20.0%
!! ACGTAGTAATTTATATACAA+TGG - chr3_1:28523614-28523633 Msa0354970:intron 20.0%
!! CGTAGTAATTTATATACAAT+GGG - chr3_1:28523615-28523634 Msa0354970:intron 20.0%
!!! ATGTTGATTATATTTTCCAT+AGG - chr3_1:28524289-28524308 Msa0354970:intron 20.0%
!!! ATTATTGTTCTCATTTGTTA+GGG - chr3_1:28524338-28524357 Msa0354970:intron 20.0%
!!! AAAACAAAGAAATTGATTCA+AGG + chr3_1:28524477-28524496 None:intergenic 20.0%
!!! GTTTTTCTTGTTATAGTTTA+TGG - chr3_1:28524492-28524511 Msa0354970:intron 20.0%
!! GAAGGAATAATTACTAAATT+TGG + chr3_1:28524557-28524576 None:intergenic 20.0%
!! AAATAATGAATCAAGTCTAA+TGG + chr3_1:28524936-28524955 None:intergenic 20.0%
!!! ACATGAATTTTTTTTTCCTT+TGG + chr3_1:28525381-28525400 None:intergenic 20.0%
!!! TTCTGGAAAAATAATTTGAA+TGG - chr3_1:28525667-28525686 Msa0354970:intron 20.0%
!!! TTATTGAATCTTTTTTCTCA+TGG - chr3_1:28525935-28525954 Msa0354970:intron 20.0%
!!! TATTGAATCTTTTTTCTCAT+GGG - chr3_1:28525936-28525955 Msa0354970:intron 20.0%
!!! TATTTGAGACTATTTTTTTC+AGG + chr3_1:28526202-28526221 None:intergenic 20.0%
!! TAAAAATATATTCTACTGCA+TGG - chr3_1:28526273-28526292 Msa0354970:CDS 20.0%
!! ATAGAGGTAAAAAATTTAAC+TGG - chr3_1:28526332-28526351 Msa0354970:intron 20.0%
!! CATTATTTATGATATTTGTG+TGG - chr3_1:28526363-28526382 Msa0354970:intron 20.0%
!! CATGAAACATTAAGATATAA+AGG + chr3_1:28527052-28527071 None:intergenic 20.0%
!! AAAAAAGGTGGTTATATATA+AGG + chr3_1:28527247-28527266 None:intergenic 20.0%
!!! ATTTTTTTCTCAAAAAAAGG+TGG + chr3_1:28527259-28527278 None:intergenic 20.0%
!! TGTATCTAGTAATTTGAATT+CGG + chr3_1:28527299-28527318 None:intergenic 20.0%
!! ATAGTTATTGGTATTAATAG+GGG + chr3_1:28527344-28527363 None:intergenic 20.0%
!!! TCATTTTGCAAAATAGTTAT+TGG + chr3_1:28527356-28527375 None:intergenic 20.0%
!!! ATTTGTACAGAAGATATTTT+AGG - chr3_1:28527394-28527413 Msa0354970:intron 20.0%
!!! TTCAAACATCTAATTTTTCA+AGG + chr3_1:28527556-28527575 None:intergenic 20.0%
!! CATTAAATAATAAACCATTG+AGG + chr3_1:28527597-28527616 None:intergenic 20.0%
!! AATAATGCATACAACATTAA+GGG + chr3_1:28527646-28527665 None:intergenic 20.0%
!! TAATAATGCATACAACATTA+AGG + chr3_1:28527647-28527666 None:intergenic 20.0%
!! AGAAAAGCTGTATTAATATT+TGG + chr3_1:28528287-28528306 None:intergenic 20.0%
!!! AATATTAATACAGCTTTTCT+AGG - chr3_1:28528287-28528306 Msa0354970:intron 20.0%
!! TATTCAAATTCCAATAGTAA+TGG + chr3_1:28528452-28528471 None:intergenic 20.0%
!! TAAATCAGATTGTGAATAAA+AGG + chr3_1:28528603-28528622 None:intergenic 20.0%
!! AATCTGATTTATACAAATGT+TGG - chr3_1:28528612-28528631 Msa0354970:five_prime_UTR 20.0%
!! TTCTAGAAAAAAATACGTAG+TGG - chr3_1:28518820-28518839 Msa0354970:three_prime_UTR 25.0%
!! AAAAAATACGTAGTGGAATT+TGG - chr3_1:28518827-28518846 Msa0354970:three_prime_UTR 25.0%
! TTATTAGAATGAAGAGAAGA+AGG + chr3_1:28518902-28518921 None:intergenic 25.0%
!!! TTACACGTATTTTTTTGAAG+CGG - chr3_1:28519192-28519211 Msa0354970:intron 25.0%
! TTAGAGTTTCAACAAAATCA+CGG - chr3_1:28519215-28519234 Msa0354970:intron 25.0%
!! ATAACTTTTGTGAAACTACT+TGG + chr3_1:28519479-28519498 None:intergenic 25.0%
!! TTTTCACAATAATAAGGACA+TGG + chr3_1:28519502-28519521 None:intergenic 25.0%
!! CGCAATTTTTCACAATAATA+AGG + chr3_1:28519508-28519527 None:intergenic 25.0%
! TGAAAAATTGCGTTTGAAAA+AGG - chr3_1:28519516-28519535 Msa0354970:CDS 25.0%
! TTGCTTATTAAATGCATGTT+TGG - chr3_1:28519624-28519643 Msa0354970:intron 25.0%
! ACGTAAATATGTGTTTAAAC+GGG - chr3_1:28519796-28519815 Msa0354970:intron 25.0%
! TATGGTTTCAAAGTTGAATA+TGG - chr3_1:28520022-28520041 Msa0354970:intron 25.0%
! ATGGTTTCAAAGTTGAATAT+GGG - chr3_1:28520023-28520042 Msa0354970:intron 25.0%
! CCTAACAATTAAAAGTCAAA+GGG + chr3_1:28520078-28520097 None:intergenic 25.0%
! ACCTAACAATTAAAAGTCAA+AGG + chr3_1:28520079-28520098 None:intergenic 25.0%
!!! GTTAGTTTGTAAAAGTATGT+AGG - chr3_1:28520223-28520242 Msa0354970:intron 25.0%
! TTTCTTACTGTCATTGTAAA+TGG - chr3_1:28520246-28520265 Msa0354970:intron 25.0%
!! AAGCAAAGCTCTTTTATATT+TGG + chr3_1:28520759-28520778 None:intergenic 25.0%
! TTGACTTTGTAAACATCATT+TGG + chr3_1:28520803-28520822 None:intergenic 25.0%
! AATTTGTGATTCAATAACAC+TGG - chr3_1:28520890-28520909 Msa0354970:intron 25.0%
! ATTTGTGATTCAATAACACT+GGG - chr3_1:28520891-28520910 Msa0354970:intron 25.0%
! TTGAGTGTTTCAAACATAAT+GGG + chr3_1:28521069-28521088 None:intergenic 25.0%
! TTTGAGTGTTTCAAACATAA+TGG + chr3_1:28521070-28521089 None:intergenic 25.0%
!! ATTATGTTTGAAACACTCAA+AGG - chr3_1:28521069-28521088 Msa0354970:intron 25.0%
!! TGTTTTCATCATGATGTATT+GGG + chr3_1:28521489-28521508 None:intergenic 25.0%
!! ATGTTTTCATCATGATGTAT+TGG + chr3_1:28521490-28521509 None:intergenic 25.0%
! AAACATAAACGAACAGATTA+TGG - chr3_1:28521504-28521523 Msa0354970:intron 25.0%
! ACATAAATGAACAGATTATG+AGG - chr3_1:28521529-28521548 Msa0354970:intron 25.0%
! ATTAACTTATGAAATGGAAG+TGG - chr3_1:28521603-28521622 Msa0354970:intron 25.0%
! TTAACTTATGAAATGGAAGT+GGG - chr3_1:28521604-28521623 Msa0354970:intron 25.0%
!!! GTAGCTTTATGTCAAAAATT+TGG - chr3_1:28521643-28521662 Msa0354970:intron 25.0%
! TATGTCAAAAATTTGGGAAA+AGG - chr3_1:28521650-28521669 Msa0354970:intron 25.0%
! ATGTCAAAAATTTGGGAAAA+GGG - chr3_1:28521651-28521670 Msa0354970:intron 25.0%
! TTAAATAAATGCATGGGTAA+AGG + chr3_1:28521742-28521761 None:intergenic 25.0%
! GGATGATTAAATAAATGCAT+GGG + chr3_1:28521748-28521767 None:intergenic 25.0%
! AGGATGATTAAATAAATGCA+TGG + chr3_1:28521749-28521768 None:intergenic 25.0%
! AAACGCATTCTATATAATAC+TGG + chr3_1:28521827-28521846 None:intergenic 25.0%
!! TGAAAAACACTTCTCAATTT+TGG - chr3_1:28522149-28522168 Msa0354970:intron 25.0%
! AGAATTTATTCCATACATAC+AGG - chr3_1:28522233-28522252 Msa0354970:intron 25.0%
! GAATTTATTCCATACATACA+GGG - chr3_1:28522234-28522253 Msa0354970:intron 25.0%
! AATTTATTCCATACATACAG+GGG - chr3_1:28522235-28522254 Msa0354970:intron 25.0%
! ATCTTTGCGATTATTTATTC+AGG - chr3_1:28522293-28522312 Msa0354970:intron 25.0%
! ATCACTAGATTTGATGTTAT+TGG + chr3_1:28522340-28522359 None:intergenic 25.0%
! TGATTGGAAAATGTTATCAT+TGG + chr3_1:28522508-28522527 None:intergenic 25.0%
!! AATGATAACATTTTCCAATC+AGG - chr3_1:28522507-28522526 Msa0354970:intron 25.0%
!!! TATTTTTTTCTTACTAGGTG+GGG - chr3_1:28522877-28522896 Msa0354970:intron 25.0%
!! TCAAATGCTTTCTCTTTTAA+AGG - chr3_1:28522925-28522944 Msa0354970:intron 25.0%
! GTGATTCAAGAGAATAATAA+GGG - chr3_1:28523089-28523108 Msa0354970:CDS 25.0%
! TGATTCAAGAGAATAATAAG+GGG - chr3_1:28523090-28523109 Msa0354970:CDS 25.0%
!! GTTGTATTTAAAATCACAGA+AGG + chr3_1:28523242-28523261 None:intergenic 25.0%
! ACATATCTCATTCTTACAAA+TGG - chr3_1:28523319-28523338 Msa0354970:CDS 25.0%
! CTAATAATCAACCAAACAAA+TGG - chr3_1:28523399-28523418 Msa0354970:intron 25.0%
!! ATAACTCATTTTACCACTAT+TGG - chr3_1:28523966-28523985 Msa0354970:intron 25.0%
! TATCAAATACAAAGAAACAG+TGG + chr3_1:28524053-28524072 None:intergenic 25.0%
! GATTATTGTTCTCATTTGTT+AGG - chr3_1:28524337-28524356 Msa0354970:intron 25.0%
!!! TGTAATAGTTGACTTTTTGA+AGG + chr3_1:28524575-28524594 None:intergenic 25.0%
! AAGTTGTGTATTTAATGCAT+TGG + chr3_1:28524602-28524621 None:intergenic 25.0%
! TATCATATTAAACTGAGTTG+AGG + chr3_1:28524885-28524904 None:intergenic 25.0%
! AGTTAATAGGAACAGAAATT+AGG + chr3_1:28524966-28524985 None:intergenic 25.0%
! ATTGATAGAGATATGTTAGA+GGG + chr3_1:28525419-28525438 None:intergenic 25.0%
! ACAGTCAGTTAATACTAATT+TGG - chr3_1:28525811-28525830 Msa0354970:intron 25.0%
! CAGTCAGTTAATACTAATTT+GGG - chr3_1:28525812-28525831 Msa0354970:intron 25.0%
! TCCATTTAGTTAGTGATAAA+AGG - chr3_1:28525864-28525883 Msa0354970:intron 25.0%
!! ACCTTTTATCACTAACTAAA+TGG + chr3_1:28525868-28525887 None:intergenic 25.0%
! AAAACAGGTAAGAAGAATAA+TGG - chr3_1:28525961-28525980 Msa0354970:intron 25.0%
! AACAAGAAAATGGAAAGAAA+TGG + chr3_1:28526028-28526047 None:intergenic 25.0%
! CTTATTATACATATTCCAGA+TGG - chr3_1:28526674-28526693 Msa0354970:intron 25.0%
!!! GATTGGTTATTTGGTTTTAA+TGG - chr3_1:28526784-28526803 Msa0354970:intron 25.0%
! ATGTAAGTTCACTTTAATTC+TGG - chr3_1:28527143-28527162 Msa0354970:intron 25.0%
! GTATCTAGTAATTTGAATTC+GGG + chr3_1:28527298-28527317 None:intergenic 25.0%
! AGGAACATTTGTATACAAAA+TGG - chr3_1:28527414-28527433 Msa0354970:intron 25.0%
!!! TTGTACCTTATTTTAGTTAC+TGG - chr3_1:28527718-28527737 Msa0354970:intron 25.0%
! CAATTCCAGTAACTAAAATA+AGG + chr3_1:28527726-28527745 None:intergenic 25.0%
! CATGATGTATAAACAAATCT+AGG + chr3_1:28527835-28527854 None:intergenic 25.0%
! TATATAGTTTAGTACTTCTG+AGG + chr3_1:28527867-28527886 None:intergenic 25.0%
! ATTAATATTTGGTCCTTACT+AGG + chr3_1:28528276-28528295 None:intergenic 25.0%
! AATTCAGTAAAAATAAGCTG+AGG - chr3_1:28528419-28528438 Msa0354970:CDS 25.0%
!! ATATTCTTTGGCTTCATAAA+TGG - chr3_1:28528503-28528522 Msa0354970:five_prime_UTR 25.0%
! ATTGTGAATAAAAGGTAATG+CGG + chr3_1:28528595-28528614 None:intergenic 25.0%
!!! TTTTTTGCGTCACATTTTCT+CGG + chr3_1:28519109-28519128 None:intergenic 30.0%
TAGAACAACTTGTGAAAATG+AGG - chr3_1:28519404-28519423 Msa0354970:intron 30.0%
TCACTTGTGTTAAAATCCTT+TGG + chr3_1:28519718-28519737 None:intergenic 30.0%
TCAACGCGTTATAGAATATA+TGG - chr3_1:28519881-28519900 Msa0354970:intron 30.0%
AACAAGCACTACAGTTAATT+TGG + chr3_1:28519919-28519938 None:intergenic 30.0%
TAAAAGTCAAAGGGATATTG+AGG + chr3_1:28520069-28520088 None:intergenic 30.0%
!! CCCTTTGACTTTTAATTGTT+AGG - chr3_1:28520075-28520094 Msa0354970:intron 30.0%
! TTGAATGCAATCACATGTTT+TGG + chr3_1:28520360-28520379 None:intergenic 30.0%
TCATATATCATGTCAGAATG+AGG + chr3_1:28520481-28520500 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG - chr3_1:28520582-28520601 Msa0354970:intron 30.0%
TGCATAATATATGCAAGGTT+CGG - chr3_1:28520587-28520606 Msa0354970:intron 30.0%
CTTACAAATCTTGTATGACT+TGG - chr3_1:28520651-28520670 Msa0354970:intron 30.0%
! ATCTTTTATTGAGTGAGCAT+AGG + chr3_1:28520865-28520884 None:intergenic 30.0%
AGAAAAGTAACCAGAAATTG+AGG + chr3_1:28520927-28520946 None:intergenic 30.0%
CTATCTACACTTTGTTACTA+CGG + chr3_1:28520960-28520979 None:intergenic 30.0%
AACAAAGTGTAGATAGTGAA+AGG - chr3_1:28520964-28520983 Msa0354970:intron 30.0%
ACTCAAACTAATAAAAGCGA+AGG + chr3_1:28520995-28521014 None:intergenic 30.0%
TCTCTACGCAAAATGTATTA+TGG - chr3_1:28521366-28521385 Msa0354970:intron 30.0%
CTCTACGCAAAATGTATTAT+GGG - chr3_1:28521367-28521386 Msa0354970:intron 30.0%
AATCATCCTATGCAAAATAC+AGG - chr3_1:28521760-28521779 Msa0354970:intron 30.0%
! TAAAGACCTGTATTTTGCAT+AGG + chr3_1:28521769-28521788 None:intergenic 30.0%
! TTGATTCACATGTCTTTTCT+TGG - chr3_1:28521934-28521953 Msa0354970:intron 30.0%
ATAATCGCAAAGATCAACAT+TGG + chr3_1:28522287-28522306 None:intergenic 30.0%
! AGATCTGAAGCAAAACTATT+TGG + chr3_1:28522464-28522483 None:intergenic 30.0%
! AAATATTGGCTAATCCTGAT+TGG + chr3_1:28522524-28522543 None:intergenic 30.0%
TGATCCAATAGAACATACTT+CGG + chr3_1:28522612-28522631 None:intergenic 30.0%
! AGTAAAACCATACCTTTTGA+AGG - chr3_1:28522756-28522775 Msa0354970:intron 30.0%
! TGATCTCTTTGGTAGTTTAT+AGG - chr3_1:28522823-28522842 Msa0354970:intron 30.0%
! GATCTCTTTGGTAGTTTATA+GGG - chr3_1:28522824-28522843 Msa0354970:intron 30.0%
!!! ATTTTTTTCTTACTAGGTGG+GGG - chr3_1:28522878-28522897 Msa0354970:intron 30.0%
! ATTTGAAACACCTAGCTAAA+TGG + chr3_1:28522911-28522930 None:intergenic 30.0%
GGTGATTCAAGAGAATAATA+AGG - chr3_1:28523088-28523107 Msa0354970:CDS 30.0%
GGATATAGTTACACAGATTA+AGG - chr3_1:28523186-28523205 Msa0354970:intron 30.0%
ACACAGATTAAGGATTTGAT+TGG - chr3_1:28523196-28523215 Msa0354970:CDS 30.0%
! TTTTAAATACAACCCCTGTA+TGG - chr3_1:28523249-28523268 Msa0354970:CDS 30.0%
GTATATGTACAAATGTGAAG+AGG + chr3_1:28523448-28523467 None:intergenic 30.0%
GAGAAACAAAAGTGAAGATA+AGG + chr3_1:28523772-28523791 None:intergenic 30.0%
CATCATCATGATATAAAAGC+AGG + chr3_1:28523798-28523817 None:intergenic 30.0%
TATCATGTAGTAATTCCCTT+CGG - chr3_1:28524071-28524090 Msa0354970:intron 30.0%
TTGACTGAAATAGACATGAA+CGG + chr3_1:28524246-28524265 None:intergenic 30.0%
TTCATGTCTATTTCAGTCAA+TGG - chr3_1:28524246-28524265 Msa0354970:intron 30.0%
! ACAGATCATATGTTTTCCTA+TGG + chr3_1:28524308-28524327 None:intergenic 30.0%
GAAAACATATGATCTGTGTT+AGG - chr3_1:28524311-28524330 Msa0354970:intron 30.0%
CACTCTTTAAGCACTTTAAA+TGG + chr3_1:28524640-28524659 None:intergenic 30.0%
ACATATCCCATAGTTTATAG+TGG - chr3_1:28524678-28524697 Msa0354970:CDS 30.0%
CATATCCCATAGTTTATAGT+GGG - chr3_1:28524679-28524698 Msa0354970:CDS 30.0%
TCACGAATTCGAACTATAAT+AGG - chr3_1:28524710-28524729 Msa0354970:CDS 30.0%
AAGTCCTTTAATACCTACAA+TGG - chr3_1:28524841-28524860 Msa0354970:intron 30.0%
AGTCCTTTAATACCTACAAT+GGG - chr3_1:28524842-28524861 Msa0354970:intron 30.0%
ATACCCATTGTAGGTATTAA+AGG + chr3_1:28524848-28524867 None:intergenic 30.0%
AATGACAGTTTAGTCAACAT+TGG - chr3_1:28525058-28525077 Msa0354970:intron 30.0%
CGAGGTTCAAATATATTTAG+TGG + chr3_1:28525139-28525158 None:intergenic 30.0%
AATGTCTTGAATGTGAAAGT+TGG - chr3_1:28525234-28525253 Msa0354970:intron 30.0%
!!! TTGGTGATTAGTTTTCCTTT+CGG - chr3_1:28525253-28525272 Msa0354970:intron 30.0%
!!! CTATCATATGCTTTTTCCAA+AGG - chr3_1:28525362-28525381 Msa0354970:intron 30.0%
GATTGATAGAGATATGTTAG+AGG + chr3_1:28525420-28525439 None:intergenic 30.0%
CATATCTCTATCAATCTTCT+TGG - chr3_1:28525424-28525443 Msa0354970:intron 30.0%
GTATATAATTTCCATGTGTC+AGG - chr3_1:28525450-28525469 Msa0354970:intron 30.0%
! TTCTTTTATCCAGCTTACAA+CGG + chr3_1:28525557-28525576 None:intergenic 30.0%
GCTGGATAAAAGAAATATTC+TGG - chr3_1:28525563-28525582 Msa0354970:intron 30.0%
TGTAACAATTGCTAAAACTC+AGG + chr3_1:28525595-28525614 None:intergenic 30.0%
!! GAGTTTTAGCAATTGTTACA+TGG - chr3_1:28525595-28525614 Msa0354970:intron 30.0%
TAGCAATTGTTACATGGTAA+AGG - chr3_1:28525601-28525620 Msa0354970:intron 30.0%
! TATTTTTCCAGAATCCAATC+AGG + chr3_1:28525660-28525679 None:intergenic 30.0%
TAGCTCAAAATTGCAACATT+TGG - chr3_1:28525720-28525739 Msa0354970:intron 30.0%
! AAATTGTCTGAAACTCTGAA+TGG - chr3_1:28525901-28525920 Msa0354970:intron 30.0%
! TTTTTCTCATGGGAAAAAAC+AGG - chr3_1:28525946-28525965 Msa0354970:intron 30.0%
GATTTGTCTATTGATCTTCT+AGG - chr3_1:28526093-28526112 Msa0354970:intron 30.0%
GTTATAATAGATGCTTCAAC+AGG - chr3_1:28526115-28526134 Msa0354970:intron 30.0%
GATGAGAAGATATTTCATGT+GGG + chr3_1:28526239-28526258 None:intergenic 30.0%
AGATGAGAAGATATTTCATG+TGG + chr3_1:28526240-28526259 None:intergenic 30.0%
TTATGATATTTGTGTGGATG+AGG - chr3_1:28526369-28526388 Msa0354970:intron 30.0%
AGAAGCGATTGATACAAAAA+AGG + chr3_1:28526462-28526481 None:intergenic 30.0%
ACTTCATGTGAGACTATATT+TGG + chr3_1:28526488-28526507 None:intergenic 30.0%
!! ATTTTACTTTTCGTCACAGT+TGG - chr3_1:28526762-28526781 Msa0354970:intron 30.0%
GAATTCGATCGAAATTTCTA+AGG + chr3_1:28526831-28526850 None:intergenic 30.0%
CATGATTATGTACAGATTGA+AGG - chr3_1:28526921-28526940 Msa0354970:intron 30.0%
! TTGAATTCGGGTTATATTGA+GGG + chr3_1:28527286-28527305 None:intergenic 30.0%
! TTTGAATTCGGGTTATATTG+AGG + chr3_1:28527287-28527306 None:intergenic 30.0%
GGTATTAATAGGGGTTTATT+TGG + chr3_1:28527335-28527354 None:intergenic 30.0%
!!! TAAAATGTTTTGACTGACCA+TGG - chr3_1:28527452-28527471 Msa0354970:intron 30.0%
ACATCTTGCATATTGATCTA+AGG + chr3_1:28527505-28527524 None:intergenic 30.0%
! TCTTTGCCAAAATTTGAAAC+CGG - chr3_1:28527527-28527546 Msa0354970:intron 30.0%
!!! ATCTAATTTTTCAAGGTTCC+CGG + chr3_1:28527549-28527568 None:intergenic 30.0%
! CCATTGAGGATTTTCAATTT+GGG + chr3_1:28527583-28527602 None:intergenic 30.0%
! ACCATTGAGGATTTTCAATT+TGG + chr3_1:28527584-28527603 None:intergenic 30.0%
! GCTTAGATTTTCCTATAAGT+TGG - chr3_1:28527616-28527635 Msa0354970:intron 30.0%
AAACAAATCTAGGTGAACAA+TGG + chr3_1:28527825-28527844 None:intergenic 30.0%
CTAGCCATTCAAATATTCTT+TGG - chr3_1:28528491-28528510 Msa0354970:five_prime_UTR 30.0%
GAAGCCAAAGAATATTTGAA+TGG + chr3_1:28528498-28528517 None:intergenic 30.0%
CCATGTGTATTAGAACAATT+GGG + chr3_1:28528568-28528587 None:intergenic 30.0%
TCCATGTGTATTAGAACAAT+TGG + chr3_1:28528569-28528588 None:intergenic 30.0%
TGGATGCTTCATTTCATACA+CGG + chr3_1:28518854-28518873 None:intergenic 35.0%
! TGTATGAAATGAAGCATCCA+GGG - chr3_1:28518854-28518873 Msa0354970:three_prime_UTR 35.0%
TAGAATGAAGAGAAGAAGGT+TGG + chr3_1:28518898-28518917 None:intergenic 35.0%
TGTGTGTGAAGAGAAGATTA+AGG + chr3_1:28518931-28518950 None:intergenic 35.0%
TGTGACGCAAAAAACTATCA+CGG - chr3_1:28519115-28519134 Msa0354970:intron 35.0%
CGCATTTGTTTCAACAATTG+CGG - chr3_1:28519557-28519576 Msa0354970:intron 35.0%
! AAAACTAAACACGCAGGTTT+TGG + chr3_1:28519604-28519623 None:intergenic 35.0%
AAGCAAAAAACTAAACACGC+AGG + chr3_1:28519610-28519629 None:intergenic 35.0%
!! TTGATTTTGACACGTTTGAG+TGG - chr3_1:28519688-28519707 Msa0354970:CDS 35.0%
ATATTCTATAACGCGTTGAG+TGG + chr3_1:28519880-28519899 None:intergenic 35.0%
ATTGTTAGGTGAGAAATCCA+AGG - chr3_1:28520089-28520108 Msa0354970:intron 35.0%
! TTTTTCTGTATCATGAGCTG+TGG - chr3_1:28520179-28520198 Msa0354970:intron 35.0%
!!! ATCATGAGCTGTGGTTTTTT+TGG - chr3_1:28520188-28520207 Msa0354970:intron 35.0%
!!! TCATGAGCTGTGGTTTTTTT+GGG - chr3_1:28520189-28520208 Msa0354970:intron 35.0%
GCATAATATATGCAAGGTTC+GGG - chr3_1:28520588-28520607 Msa0354970:intron 35.0%
CATAATATATGCAAGGTTCG+GGG - chr3_1:28520589-28520608 Msa0354970:intron 35.0%
TTACTCGATGCTCACAATTA+CGG + chr3_1:28521018-28521037 None:intergenic 35.0%
! TGTTTCAAACATAATGGGAC+AGG + chr3_1:28521064-28521083 None:intergenic 35.0%
! GTTTGAAACACTCAAAGGAA+TGG - chr3_1:28521074-28521093 Msa0354970:intron 35.0%
TGTTTACGAGCTTGTACAAA+AGG - chr3_1:28521199-28521218 Msa0354970:intron 35.0%
GTTTACGAGCTTGTACAAAA+GGG - chr3_1:28521200-28521219 Msa0354970:intron 35.0%
GCTTGTACAAAAGGGAAATT+TGG - chr3_1:28521208-28521227 Msa0354970:intron 35.0%
TTTCATCATGATGTATTGGG+AGG + chr3_1:28521486-28521505 None:intergenic 35.0%
AATACTGGATAGACGTAACA+GGG + chr3_1:28521812-28521831 None:intergenic 35.0%
TAATACTGGATAGACGTAAC+AGG + chr3_1:28521813-28521832 None:intergenic 35.0%
! TCTTTTCTTGGTCTGTTTGA+TGG - chr3_1:28521946-28521965 Msa0354970:intron 35.0%
TTGATGGAAGCCAAATGAAT+TGG - chr3_1:28521962-28521981 Msa0354970:intron 35.0%
! ACACTTCTCAATTTTGGATG+AGG - chr3_1:28522155-28522174 Msa0354970:intron 35.0%
! CACTTCTCAATTTTGGATGA+GGG - chr3_1:28522156-28522175 Msa0354970:intron 35.0%
TCAAATTTCCCCTGTATGTA+TGG + chr3_1:28522246-28522265 None:intergenic 35.0%
ATCGAAGTGCAGCTTATATT+AGG - chr3_1:28522376-28522395 Msa0354970:CDS 35.0%
AGTGCAGCTTATATTAGGTT+AGG - chr3_1:28522381-28522400 Msa0354970:CDS 35.0%
!! ATGGTTTTACTGAACTGCTT+TGG + chr3_1:28522747-28522766 None:intergenic 35.0%
TAATGCTCTTCTTCTGGTAA+GGG - chr3_1:28522780-28522799 Msa0354970:intron 35.0%
TTGTTCTCACTTGATCTCTT+TGG - chr3_1:28522812-28522831 Msa0354970:intron 35.0%
ATGAAATAGGTACAGACACA+AGG + chr3_1:28523016-28523035 None:intergenic 35.0%
TTGTGTCTGTACCTATTTCA+TGG - chr3_1:28523015-28523034 Msa0354970:intron 35.0%
TGTGTCTGTACCTATTTCAT+GGG - chr3_1:28523016-28523035 Msa0354970:intron 35.0%
AAGAGAATAATAAGGGGAAG+TGG - chr3_1:28523096-28523115 Msa0354970:intron 35.0%
AATAGTAGCTGCTAGCATTT+AGG - chr3_1:28523164-28523183 Msa0354970:intron 35.0%
ATAGTAGCTGCTAGCATTTA+GGG - chr3_1:28523165-28523184 Msa0354970:intron 35.0%
TTGTGTCATATGACCATACA+GGG + chr3_1:28523265-28523284 None:intergenic 35.0%
ATTGTGTCATATGACCATAC+AGG + chr3_1:28523266-28523285 None:intergenic 35.0%
AAACCCAAGAATCACTGTAA+AGG + chr3_1:28523374-28523393 None:intergenic 35.0%
TAAATGCTTGTGTATGAGCT+TGG - chr3_1:28523563-28523582 Msa0354970:CDS 35.0%
GCAAAAAAGTAGACTGCAAT+GGG + chr3_1:28523662-28523681 None:intergenic 35.0%
AGCAAAAAAGTAGACTGCAA+TGG + chr3_1:28523663-28523682 None:intergenic 35.0%
! AAATTGCTTCACCCTGTTTT+TGG - chr3_1:28523727-28523746 Msa0354970:intron 35.0%
!!! GACTTCAAGTTGATCCTTTT+AGG - chr3_1:28523906-28523925 Msa0354970:intron 35.0%
GTGAATGTGCAATACCTAAA+AGG + chr3_1:28523923-28523942 None:intergenic 35.0%
GCACACTAAATGACTAGTAA+AGG + chr3_1:28524021-28524040 None:intergenic 35.0%
ATCATGTAGTAATTCCCTTC+GGG - chr3_1:28524072-28524091 Msa0354970:intron 35.0%
! ACAGTATCATCTAGTTCAAC+TGG - chr3_1:28524115-28524134 Msa0354970:intron 35.0%
! CAGTATCATCTAGTTCAACT+GGG - chr3_1:28524116-28524135 Msa0354970:intron 35.0%
ACCTAATTGAACATGTTCTG+GGG + chr3_1:28524402-28524421 None:intergenic 35.0%
CACCTAATTGAACATGTTCT+GGG + chr3_1:28524403-28524422 None:intergenic 35.0%
TCACCTAATTGAACATGTTC+TGG + chr3_1:28524404-28524423 None:intergenic 35.0%
! ATTGATTCAAGGCTACGATT+TGG + chr3_1:28524466-28524485 None:intergenic 35.0%
ACCATCCCACTATAAACTAT+GGG + chr3_1:28524687-28524706 None:intergenic 35.0%
AACCATCCCACTATAAACTA+TGG + chr3_1:28524688-28524707 None:intergenic 35.0%
AAGTCACAAATACCCATTGT+AGG + chr3_1:28524857-28524876 None:intergenic 35.0%
CATACAAAAGAACTTTCCAG+AGG - chr3_1:28525012-28525031 Msa0354970:intron 35.0%
CAACATCCATGACAAAAAGA+GGG + chr3_1:28525096-28525115 None:intergenic 35.0%
ACAACATCCATGACAAAAAG+AGG + chr3_1:28525097-28525116 None:intergenic 35.0%
TTTAGTGGAAACCTTTGACA+GGG + chr3_1:28525124-28525143 None:intergenic 35.0%
ATTTAGTGGAAACCTTTGAC+AGG + chr3_1:28525125-28525144 None:intergenic 35.0%
TGAACCTCGTTATAGACTTA+TGG - chr3_1:28525150-28525169 Msa0354970:intron 35.0%
GTTATAGACTTATGGTGAGT+TGG - chr3_1:28525158-28525177 Msa0354970:intron 35.0%
!! AGATATGTACAAGTACCGAA+AGG + chr3_1:28525271-28525290 None:intergenic 35.0%
! ATAGTTTTTCCGTTGTAAGC+TGG - chr3_1:28525545-28525564 Msa0354970:intron 35.0%
CAAAAATTACCAGACCTGAT+TGG - chr3_1:28525643-28525662 Msa0354970:intron 35.0%
CAAAATTGCAACATTTGGAG+AGG - chr3_1:28525725-28525744 Msa0354970:intron 35.0%
! CAGGTAAGAAGAATAATGGA+AGG - chr3_1:28525965-28525984 Msa0354970:intron 35.0%
! GAATAATGGAAGGCAATCAT+CGG - chr3_1:28525975-28525994 Msa0354970:intron 35.0%
ATATTTCATGTGGGAAAGGA+GGG + chr3_1:28526230-28526249 None:intergenic 35.0%
GAAGATATTTCATGTGGGAA+AGG + chr3_1:28526234-28526253 None:intergenic 35.0%
TATATTCTACTGCATGGTGT+AGG - chr3_1:28526279-28526298 Msa0354970:CDS 35.0%
TCTATATAAAAGCGACCATC+TGG + chr3_1:28526317-28526336 None:intergenic 35.0%
!!! AGATGGTCGCTTTTATATAG+AGG - chr3_1:28526316-28526335 Msa0354970:intron 35.0%
!!! TGCTTTCCATTTTTCGAGAA+AGG - chr3_1:28526416-28526435 Msa0354970:intron 35.0%
!!! GCTTTCCATTTTTCGAGAAA+GGG - chr3_1:28526417-28526436 Msa0354970:intron 35.0%
AACTTCCCTTTCTCGAAAAA+TGG + chr3_1:28526425-28526444 None:intergenic 35.0%
TTATGTGCACTGTTCTCATA+TGG - chr3_1:28526570-28526589 Msa0354970:intron 35.0%
TTGGAAAAATCCAACCACAT+TGG - chr3_1:28526593-28526612 Msa0354970:intron 35.0%
TGTAACTGCATAAACCAATG+TGG + chr3_1:28526610-28526629 None:intergenic 35.0%
! GAGTTGTTCAAGTTAAGAGT+TGG - chr3_1:28526722-28526741 Msa0354970:intron 35.0%
!! AAGTTAAGAGTTGGTGTTCA+TGG - chr3_1:28526731-28526750 Msa0354970:intron 35.0%
!! TCACAGTTGGATTGGTTATT+TGG - chr3_1:28526775-28526794 Msa0354970:intron 35.0%
!! AGGAGCTGCAAAAGTATTAT+TGG + chr3_1:28526811-28526830 None:intergenic 35.0%
CATTTCTTTGTAAGCCGTAT+AGG - chr3_1:28527170-28527189 Msa0354970:intron 35.0%
! TGAATTCGGGTTATATTGAG+GGG + chr3_1:28527285-28527304 None:intergenic 35.0%
! TATCTTTTGCAGCTAATCCA+TGG + chr3_1:28527472-28527491 None:intergenic 35.0%
! CTTTGCCAAAATTTGAAACC+GGG - chr3_1:28527528-28527547 Msa0354970:intron 35.0%
CCCAAATTGAAAATCCTCAA+TGG - chr3_1:28527580-28527599 Msa0354970:intron 35.0%
TTAAGGGTCATCCAACTTAT+AGG + chr3_1:28527630-28527649 None:intergenic 35.0%
TTCTTGTAGAGAATTAGACG+AGG - chr3_1:28528360-28528379 Msa0354970:intron 35.0%
AGGAACGTTACCATTACTAT+TGG - chr3_1:28528439-28528458 Msa0354970:CDS 35.0%
TTCATAAATGGCTGTTCATG+AGG - chr3_1:28528515-28528534 Msa0354970:five_prime_UTR 35.0%
CCCAATTGTTCTAATACACA+TGG - chr3_1:28528565-28528584 Msa0354970:five_prime_UTR 35.0%
AATTATTATGAGGACACGCT+AGG - chr3_1:28528651-28528670 Msa0354970:five_prime_UTR 35.0%
! GTGTATGAAATGAAGCATCC+AGG - chr3_1:28518853-28518872 Msa0354970:three_prime_UTR 40.0%
! GTATGAAATGAAGCATCCAG+GGG - chr3_1:28518855-28518874 Msa0354970:three_prime_UTR 40.0%
GAAGAGAAGAAGGTTGGAAA+AGG + chr3_1:28518892-28518911 None:intergenic 40.0%
ATTTCCCATTCTACCCTCAA+TGG - chr3_1:28518984-28519003 Msa0354970:three_prime_UTR 40.0%
ACTATCACGGTTTCTTTGAG+TGG - chr3_1:28519128-28519147 Msa0354970:intron 40.0%
TCGAGTGACATAAGTGATTC+TGG - chr3_1:28519655-28519674 Msa0354970:intron 40.0%
! ACGTTTGAGTGGTTTTCCAA+AGG - chr3_1:28519699-28519718 Msa0354970:CDS 40.0%
!!! AGACTGTCATTTTCTCTCCT+TGG + chr3_1:28520109-28520128 None:intergenic 40.0%
TAAATGGCTTAGTGTCTGTG+CGG - chr3_1:28520262-28520281 Msa0354970:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+AGG + chr3_1:28520621-28520640 None:intergenic 40.0%
CCAGAAATTGAGGATTGTGA+GGG + chr3_1:28520917-28520936 None:intergenic 40.0%
ACCAGAAATTGAGGATTGTG+AGG + chr3_1:28520918-28520937 None:intergenic 40.0%
! TTCTCTGGGAGTCTAAGATT+TGG - chr3_1:28521124-28521143 Msa0354970:intron 40.0%
! TGGGAGTCTAAGATTTGGTT+TGG - chr3_1:28521129-28521148 Msa0354970:intron 40.0%
!! CTAAGATTTGGTTTGGTTGC+AGG - chr3_1:28521136-28521155 Msa0354970:CDS 40.0%
!! TTGGTTTGGTTGCAGGATAA+TGG - chr3_1:28521143-28521162 Msa0354970:CDS 40.0%
TTCCATTCTGTTGTCTCGAA+AGG + chr3_1:28521234-28521253 None:intergenic 40.0%
AATACACTTGACTGCATCCA+CGG + chr3_1:28521701-28521720 None:intergenic 40.0%
GAAGCCAAATGAATTGGTGT+TGG - chr3_1:28521968-28521987 Msa0354970:intron 40.0%
ATGGCCAACACCAATTCATT+TGG + chr3_1:28521975-28521994 None:intergenic 40.0%
! TCTCAATTTTGGATGAGGGA+TGG - chr3_1:28522160-28522179 Msa0354970:intron 40.0%
TCTAGTGATCCAATCATCCT+CGG - chr3_1:28522351-28522370 Msa0354970:CDS 40.0%
CATCATCATCCTCAGAACAT+AGG - chr3_1:28522555-28522574 Msa0354970:intron 40.0%
CTTGCCGAAGTATGTTCTAT+TGG - chr3_1:28522605-28522624 Msa0354970:intron 40.0%
TTCTTGACAACCATTTCAGC+TGG - chr3_1:28522690-28522709 Msa0354970:intron 40.0%
TCTTGACAACCATTTCAGCT+GGG - chr3_1:28522691-28522710 Msa0354970:intron 40.0%
!! GCATTAGCCTTCAAAAGGTA+TGG + chr3_1:28522766-28522785 None:intergenic 40.0%
!! GAAGAGCATTAGCCTTCAAA+AGG + chr3_1:28522771-28522790 None:intergenic 40.0%
CTAATGCTCTTCTTCTGGTA+AGG - chr3_1:28522779-28522798 Msa0354970:intron 40.0%
! GGGTTGATTTCCATTTAGCT+AGG - chr3_1:28522898-28522917 Msa0354970:intron 40.0%
AATAGGTACAGACACAAGGT+GGG + chr3_1:28523012-28523031 None:intergenic 40.0%
AAATAGGTACAGACACAAGG+TGG + chr3_1:28523013-28523032 None:intergenic 40.0%
GTGTCTGTACCTATTTCATG+GGG - chr3_1:28523017-28523036 Msa0354970:intron 40.0%
TCAAGAGTTCCCCATGAAAT+AGG + chr3_1:28523029-28523048 None:intergenic 40.0%
ATGGGGAACTCTTGAATGTA+GGG - chr3_1:28523034-28523053 Msa0354970:intron 40.0%
CTCTTGAATCACCATAACAC+AGG + chr3_1:28523081-28523100 None:intergenic 40.0%
TGTGTCATATGACCATACAG+GGG + chr3_1:28523264-28523283 None:intergenic 40.0%
AGCACCTTTACAGTGATTCT+TGG - chr3_1:28523367-28523386 Msa0354970:CDS 40.0%
GCACCTTTACAGTGATTCTT+GGG - chr3_1:28523368-28523387 Msa0354970:CDS 40.0%
CAGAGTGGTAACCATTTGTT+TGG + chr3_1:28523413-28523432 None:intergenic 40.0%
AGGCTTCTTCATAATCAGAG+TGG + chr3_1:28523428-28523447 None:intergenic 40.0%
ATGGACAAAGGCCAAAAACA+GGG + chr3_1:28523741-28523760 None:intergenic 40.0%
GCAGTTAGAGAAATATGACG+TGG - chr3_1:28523862-28523881 Msa0354970:intron 40.0%
TAGAGAAATATGACGTGGCT+CGG - chr3_1:28523867-28523886 Msa0354970:intron 40.0%
! TCTTTGAAGACATTCCCGAA+GGG + chr3_1:28524089-28524108 None:intergenic 40.0%
! TATCATCTAGTTCAACTGGG+AGG - chr3_1:28524119-28524138 Msa0354970:intron 40.0%
CAGGTTCATACAGTAACTTC+AGG + chr3_1:28524195-28524214 None:intergenic 40.0%
CTATTTCAGTCAATGGATCG+TGG - chr3_1:28524253-28524272 Msa0354970:intron 40.0%
! TCCCATAGTTTATAGTGGGA+TGG - chr3_1:28524683-28524702 Msa0354970:CDS 40.0%
TCACACTAGCAGCAGTTAAT+AGG + chr3_1:28524979-28524998 None:intergenic 40.0%
TTCCAGAGGAATATGCTGAA+AGG - chr3_1:28525026-28525045 Msa0354970:intron 40.0%
TTCCTTTCAGCATATTCCTC+TGG + chr3_1:28525031-28525050 None:intergenic 40.0%
! TATGCTCCCTCTTTTTGTCA+TGG - chr3_1:28525087-28525106 Msa0354970:CDS 40.0%
ATGTTGTCTTACCCTGTCAA+AGG - chr3_1:28525110-28525129 Msa0354970:CDS 40.0%
CTCACCATAAGTCTATAACG+AGG + chr3_1:28525157-28525176 None:intergenic 40.0%
!! ACTTATGGTGAGTTGGTCAA+TGG - chr3_1:28525165-28525184 Msa0354970:intron 40.0%
!! GAATGCTTAGAGAAGTGCTA+TGG + chr3_1:28525343-28525362 None:intergenic 40.0%
TTTATTGGGTTCCTGACACA+TGG + chr3_1:28525464-28525483 None:intergenic 40.0%
AAATCACACACAGTGACAGA+TGG + chr3_1:28526078-28526097 None:intergenic 40.0%
ACAGGTTCATTAGCAGAGTT+TGG - chr3_1:28526133-28526152 Msa0354970:intron 40.0%
GAAATCACAGAGTAAGTGCT+TGG - chr3_1:28526166-28526185 Msa0354970:intron 40.0%
GATATTTCATGTGGGAAAGG+AGG + chr3_1:28526231-28526250 None:intergenic 40.0%
ACTGCATAAACCAATGTGGT+TGG + chr3_1:28526606-28526625 None:intergenic 40.0%
! ACATATTCCAGATGGTCTTG+AGG - chr3_1:28526682-28526701 Msa0354970:intron 40.0%
AAGAAATCCTCAAGACCATC+TGG + chr3_1:28526692-28526711 None:intergenic 40.0%
! ACTTTTCGTCACAGTTGGAT+TGG - chr3_1:28526767-28526786 Msa0354970:intron 40.0%
ATGTACAGATTGAAGGTCGT+AGG - chr3_1:28526928-28526947 Msa0354970:intron 40.0%
ATCGTGTTGCAGAAGTTGAA+TGG - chr3_1:28527077-28527096 Msa0354970:intron 40.0%
TGCAGAAGTTGAATGGATAC+AGG - chr3_1:28527084-28527103 Msa0354970:intron 40.0%
CATAGGAGGTAGATTGTGAT+CGG - chr3_1:28527196-28527215 Msa0354970:intron 40.0%
! AGGTTCCCGGTTTCAAATTT+TGG + chr3_1:28527536-28527555 None:intergenic 40.0%
GAGAAACTCGTGAATGTTGA+AGG - chr3_1:28527917-28527936 Msa0354970:intron 40.0%
AGGAGATCCAATCTTTCTGA+AGG + chr3_1:28528110-28528129 None:intergenic 40.0%
CTGTAGTATCTCTAATGCGT+AGG + chr3_1:28528130-28528149 None:intergenic 40.0%
ACGCATTAGAGATACTACAG+AGG - chr3_1:28528130-28528149 Msa0354970:intron 40.0%
! GCACTGACACTTCTGATAGA+CGG - chr3_1:28520294-28520313 Msa0354970:intron 45.0%
!!! CACATGTTTTGGTGTCGAGT+CGG + chr3_1:28520349-28520368 None:intergenic 45.0%
CTATTGTGAGTCCACGGATA+CGG + chr3_1:28520441-28520460 None:intergenic 45.0%
CTGACACTATTGTGAGTCCA+CGG + chr3_1:28520447-28520466 None:intergenic 45.0%
TGAGCTAAGCTCAGTTGGTT+GGG - chr3_1:28520560-28520579 Msa0354970:intron 45.0%
AAGGTTCGGGGTTAAAACCT+CGG - chr3_1:28520601-28520620 Msa0354970:intron 45.0%
CCCTCACAATCCTCAATTTC+TGG - chr3_1:28520914-28520933 Msa0354970:intron 45.0%
!! TTGCAGGATAATGGACCAGA+AGG - chr3_1:28521152-28521171 Msa0354970:intron 45.0%
ATGGACCAGAAGGATTGTCA+TGG - chr3_1:28521162-28521181 Msa0354970:intron 45.0%
TGGACCAGAAGGATTGTCAT+GGG - chr3_1:28521163-28521182 Msa0354970:intron 45.0%
TCGAGACAACAGAATGGAAG+AGG - chr3_1:28521235-28521254 Msa0354970:intron 45.0%
GGGAGGATACATGATTACTC+CGG + chr3_1:28521469-28521488 None:intergenic 45.0%
GTGGATGCAGTCAAGTGTAT+TGG - chr3_1:28521700-28521719 Msa0354970:intron 45.0%
ACTCAATGGCCTATGTTCTG+AGG + chr3_1:28522567-28522586 None:intergenic 45.0%
TCAGAACATAGGCCATTGAG+TGG - chr3_1:28522566-28522585 Msa0354970:intron 45.0%
CAGAACATAGGCCATTGAGT+GGG - chr3_1:28522567-28522586 Msa0354970:intron 45.0%
! CATACTTCGGCAAGTGTTGT+GGG + chr3_1:28522599-28522618 None:intergenic 45.0%
! ACATACTTCGGCAAGTGTTG+TGG + chr3_1:28522600-28522619 None:intergenic 45.0%
ACCATTTCAGCTGGGTTTGA+AGG - chr3_1:28522699-28522718 Msa0354970:intron 45.0%
TCCTTCAAACCCAGCTGAAA+TGG + chr3_1:28522703-28522722 None:intergenic 45.0%
GAAGGCTAATGCTCTTCTTC+TGG - chr3_1:28522774-28522793 Msa0354970:intron 45.0%
TTAACCCATGTCGCTAGTTG+AGG - chr3_1:28522978-28522997 Msa0354970:intron 45.0%
TTCACCTCAACTAGCGACAT+GGG + chr3_1:28522985-28523004 None:intergenic 45.0%
ATTCACCTCAACTAGCGACA+TGG + chr3_1:28522986-28523005 None:intergenic 45.0%
CATGGGGAACTCTTGAATGT+AGG - chr3_1:28523033-28523052 Msa0354970:intron 45.0%
TCTTGAATGTAGGGCAAGTG+TGG - chr3_1:28523043-28523062 Msa0354970:intron 45.0%
GCGCAGTACAAAGTACATCA+AGG + chr3_1:28523589-28523608 None:intergenic 45.0%
CATGGACAAAGGCCAAAAAC+AGG + chr3_1:28523742-28523761 None:intergenic 45.0%
TGAAGATAAGGATCTGCGCA+TGG + chr3_1:28523760-28523779 None:intergenic 45.0%
AGAGAAATATGACGTGGCTC+GGG - chr3_1:28523868-28523887 Msa0354970:intron 45.0%
GCTCGGGATGTTATTCTTTC+TGG - chr3_1:28523884-28523903 Msa0354970:intron 45.0%
! CTCTTTGAAGACATTCCCGA+AGG + chr3_1:28524090-28524109 None:intergenic 45.0%
TCGGGAATGTCTTCAAAGAG+TGG - chr3_1:28524090-28524109 Msa0354970:intron 45.0%
TCAAAGTCATCATTCCGCTC+TGG + chr3_1:28524160-28524179 None:intergenic 45.0%
GCAAAATGAATGTCCACAGG+GGG + chr3_1:28524224-28524243 None:intergenic 45.0%
GGCAAAATGAATGTCCACAG+GGG + chr3_1:28524225-28524244 None:intergenic 45.0%
CGGCAAAATGAATGTCCACA+GGG + chr3_1:28524226-28524245 None:intergenic 45.0%
ACGGCAAAATGAATGTCCAC+AGG + chr3_1:28524227-28524246 None:intergenic 45.0%
GCCCCAGAACATGTTCAATT+AGG - chr3_1:28524398-28524417 Msa0354970:intron 45.0%
!! AAAGTGCTTAAAGAGTGCCC+CGG - chr3_1:28524643-28524662 Msa0354970:intron 45.0%
!! GCTTAGAGAAGTGCTATGGA+CGG + chr3_1:28525339-28525358 None:intergenic 45.0%
TACCAGACCTGATTGGATTC+TGG - chr3_1:28525650-28525669 Msa0354970:intron 45.0%
TTCCAGAATCCAATCAGGTC+TGG + chr3_1:28525655-28525674 None:intergenic 45.0%
AATGGAAGGCAATCATCGGA+TGG - chr3_1:28525979-28525998 Msa0354970:intron 45.0%
ATGGAAGGCAATCATCGGAT+GGG - chr3_1:28525980-28525999 Msa0354970:intron 45.0%
CACACAGTGACAGATGGATA+TGG + chr3_1:28526072-28526091 None:intergenic 45.0%
TAAAAGCGACCATCTGGAAG+TGG + chr3_1:28526311-28526330 None:intergenic 45.0%
GTGCACTGTTCTCATATGGT+TGG - chr3_1:28526574-28526593 Msa0354970:intron 45.0%
ATTTCGCAACCTCCGTTCTT+GGG - chr3_1:28526953-28526972 Msa0354970:intron 45.0%
TCCGTTCTTGGGATCAAGAT+GGG - chr3_1:28526964-28526983 Msa0354970:intron 45.0%
ACCCATCTTGATCCCAAGAA+CGG + chr3_1:28526968-28526987 None:intergenic 45.0%
AAGATGGGTGAGTTGTCTCT+CGG - chr3_1:28526979-28526998 Msa0354970:intron 45.0%
!! TCGCTGCAATTTGTTGTGTG+TGG - chr3_1:28527019-28527038 Msa0354970:intron 45.0%
AGGATATTATGCCGCCAGAA+GGG - chr3_1:28527104-28527123 Msa0354970:intron 45.0%
TCTCTTTCCTTTGTCCCTTC+TGG + chr3_1:28527121-28527140 None:intergenic 45.0%
AGAAGGGACAAAGGAAAGAG+AGG - chr3_1:28527120-28527139 Msa0354970:intron 45.0%
TACCTCCTATGCAGCCTATA+CGG + chr3_1:28527187-28527206 None:intergenic 45.0%
!! GAAAGTGCTCGAACATGGAT+AGG - chr3_1:28527761-28527780 Msa0354970:intron 45.0%
GCTAAAGAAGCAGCAAGACA+AGG - chr3_1:28527788-28527807 Msa0354970:intron 45.0%
GATACCCTCATTAAGAGACC+CGG - chr3_1:28527943-28527962 Msa0354970:intron 45.0%
! ACCCAAAAACTAAAGCGCTC+CGG + chr3_1:28527965-28527984 None:intergenic 45.0%
TCGTAGGCCTTCAGAAAGAT+TGG - chr3_1:28528100-28528119 Msa0354970:intron 45.0%
CCTCTGCTCGAAGAAATATC+AGG + chr3_1:28528386-28528405 None:intergenic 45.0%
CCTGATATTTCTTCGAGCAG+AGG - chr3_1:28528383-28528402 Msa0354970:intron 45.0%
TTTCTTCGAGCAGAGGAACA+AGG - chr3_1:28528390-28528409 Msa0354970:intron 45.0%
!! TTAAAAAAAAAAAAAAAACT+CGG + chr3_1:28519157-28519176 None:intergenic 5.0%
!! TAATCATATTTATATATAAA+TGG + chr3_1:28521320-28521339 None:intergenic 5.0%
!! TTTAATTAATATATTCTATT+AGG + chr3_1:28523534-28523553 None:intergenic 5.0%
GTGGCCATTGAGGGTAGAAT+GGG + chr3_1:28518991-28519010 None:intergenic 50.0%
AGTGGCCATTGAGGGTAGAA+TGG + chr3_1:28518992-28519011 None:intergenic 50.0%
AGAATCGGAAGGAGGTTGAG+TGG + chr3_1:28519010-28519029 None:intergenic 50.0%
!! CAGAAGTGTCAGTGCTACTG+AGG + chr3_1:28520289-28520308 None:intergenic 50.0%
CTTCTGATAGACGGTGTGTC+TGG - chr3_1:28520303-28520322 Msa0354970:intron 50.0%
ACCAGTGTTGCGTGTTAGTG+TGG - chr3_1:28520406-28520425 Msa0354970:intron 50.0%
ACCACACTAACACGCAACAC+TGG + chr3_1:28520410-28520429 None:intergenic 50.0%
CCAACTGAGCTTAGCTCACA+AGG + chr3_1:28520558-28520577 None:intergenic 50.0%
CCTTGTGAGCTAAGCTCAGT+TGG - chr3_1:28520555-28520574 Msa0354970:intron 50.0%
GTGAGCTAAGCTCAGTTGGT+TGG - chr3_1:28520559-28520578 Msa0354970:intron 50.0%
GTGTCCCATGACAATCCTTC+TGG + chr3_1:28521170-28521189 None:intergenic 50.0%
GGCCTTTCGAGACAACAGAA+TGG - chr3_1:28521229-28521248 Msa0354970:intron 50.0%
GCGACAACAGTATTGTTCCG+TGG - chr3_1:28521681-28521700 Msa0354970:intron 50.0%
CTTCGATTGCCGAGGATGAT+TGG + chr3_1:28522363-28522382 None:intergenic 50.0%
GAAGGATGCTGCAAAGCTTG+TGG - chr3_1:28522717-28522736 Msa0354970:intron 50.0%
ATGTAGGGCAAGTGTGGAGT+TGG - chr3_1:28523049-28523068 Msa0354970:intron 50.0%
GTTGGACATGGCCTGTGTTA+TGG - chr3_1:28523067-28523086 Msa0354970:CDS 50.0%
ACAGTGCAAAGTAGCGAGTG+TGG + chr3_1:28523694-28523713 None:intergenic 50.0%
AAGGATCTGCGCATGGACAA+AGG + chr3_1:28523753-28523772 None:intergenic 50.0%
GTACACATGCACAACCAGAG+CGG - chr3_1:28524143-28524162 Msa0354970:intron 50.0%
GCAGAACTGTCCTGCACAAT+GGG + chr3_1:28524372-28524391 None:intergenic 50.0%
AGCAGAACTGTCCTGCACAA+TGG + chr3_1:28524373-28524392 None:intergenic 50.0%
!! AAGTGCTTAAAGAGTGCCCC+GGG - chr3_1:28524644-28524663 Msa0354970:intron 50.0%
ATATGTTAACGAGTGCCCCC+GGG + chr3_1:28524664-28524683 None:intergenic 50.0%
GATATGTTAACGAGTGCCCC+CGG + chr3_1:28524665-28524684 None:intergenic 50.0%
GCAACATTTGGAGAGGATCG+AGG - chr3_1:28525732-28525751 Msa0354970:intron 50.0%
ATTTGGAGAGGATCGAGGAC+TGG - chr3_1:28525737-28525756 Msa0354970:intron 50.0%
AGGCAATCATCGGATGGGAA+TGG - chr3_1:28525985-28526004 Msa0354970:intron 50.0%
AGCAGAGTTTGGCTGTGAAG+TGG - chr3_1:28526144-28526163 Msa0354970:intron 50.0%
GATTTCGCAACCTCCGTTCT+TGG - chr3_1:28526952-28526971 Msa0354970:intron 50.0%
CATCTTGATCCCAAGAACGG+AGG + chr3_1:28526965-28526984 None:intergenic 50.0%
CTCCGTTCTTGGGATCAAGA+TGG - chr3_1:28526963-28526982 Msa0354970:intron 50.0%
CAGGATATTATGCCGCCAGA+AGG - chr3_1:28527103-28527122 Msa0354970:intron 50.0%
CTTTCCTTTGTCCCTTCTGG+CGG + chr3_1:28527118-28527137 None:intergenic 50.0%
GTAAGCCGTATAGGCTGCAT+AGG - chr3_1:28527179-28527198 Msa0354970:intron 50.0%
!! CAGCAGAAAGTGCTCGAACA+TGG - chr3_1:28527756-28527775 Msa0354970:intron 50.0%
!!! ACCCGGAGCGCTTTAGTTTT+TGG - chr3_1:28527960-28527979 Msa0354970:intron 50.0%
! CCCAAAAACTAAAGCGCTCC+GGG + chr3_1:28527964-28527983 None:intergenic 50.0%
!!! CCCGGAGCGCTTTAGTTTTT+GGG - chr3_1:28527961-28527980 Msa0354970:intron 50.0%
TGAAGGCCTACGATTCGAGA+GGG + chr3_1:28528093-28528112 None:intergenic 50.0%
!! AAAGGTATCGTGTTCGCCCC+TGG + chr3_1:28518874-28518893 None:intergenic 55.0%
GGAGGTTGAGTGGCCATTGA+GGG + chr3_1:28519000-28519019 None:intergenic 55.0%
AGGAGGTTGAGTGGCCATTG+AGG + chr3_1:28519001-28519020 None:intergenic 55.0%
ACGTCGAGAGAATCGGAAGG+AGG + chr3_1:28519018-28519037 None:intergenic 55.0%
TCGACGTCGAGAGAATCGGA+AGG + chr3_1:28519021-28519040 None:intergenic 55.0%
GTCGTCGACGTCGAGAGAAT+CGG + chr3_1:28519025-28519044 None:intergenic 55.0%
! CGACGTCGACGACTACGTTT+TGG - chr3_1:28519032-28519051 Msa0354970:exon 55.0%
GGTGTAAGTGTCCGTATCCG+TGG - chr3_1:28520427-28520446 Msa0354970:intron 55.0%
AAGCTGCACTTCGATTGCCG+AGG + chr3_1:28522371-28522390 None:intergenic 55.0%
GTGGGATCAAGCCCACTCAA+TGG + chr3_1:28522581-28522600 None:intergenic 55.0%
GGCAAGTGTGGAGTTGGACA+TGG - chr3_1:28523055-28523074 Msa0354970:CDS 55.0%
GGAACAGATGCCCATTGTGC+AGG - chr3_1:28524359-28524378 Msa0354970:intron 55.0%
! GTCTTGTTATCGACTGCCCC+CGG - chr3_1:28524514-28524533 Msa0354970:intron 55.0%
! TCTTGTTATCGACTGCCCCC+GGG - chr3_1:28524515-28524534 Msa0354970:intron 55.0%
!! ATCCTTAAAGAGTGCCCCGG+GGG + chr3_1:28524533-28524552 None:intergenic 55.0%
!! GATCCTTAAAGAGTGCCCCG+GGG + chr3_1:28524534-28524553 None:intergenic 55.0%
!! GGATCCTTAAAGAGTGCCCC+GGG + chr3_1:28524535-28524554 None:intergenic 55.0%
!! GGGATCCTTAAAGAGTGCCC+CGG + chr3_1:28524536-28524555 None:intergenic 55.0%
!! AGTGCTTAAAGAGTGCCCCG+GGG - chr3_1:28524645-28524664 Msa0354970:intron 55.0%
TATGTTAACGAGTGCCCCCG+GGG + chr3_1:28524663-28524682 None:intergenic 55.0%
AGGTGTGAGCCACTTCCAGA+TGG - chr3_1:28526299-28526318 Msa0354970:intron 55.0%
TATGCCGCCAGAAGGGACAA+AGG - chr3_1:28527111-28527130 Msa0354970:intron 55.0%
AGCCGTATAGGCTGCATAGG+AGG - chr3_1:28527182-28527201 Msa0354970:intron 55.0%
CGCTCCGGGTCTCTTAATGA+GGG + chr3_1:28527950-28527969 None:intergenic 55.0%
TCGCTACCCTCTCGAATCGT+AGG - chr3_1:28528084-28528103 Msa0354970:intron 55.0%
CTGAAGGCCTACGATTCGAG+AGG + chr3_1:28528094-28528113 None:intergenic 55.0%
GAACCTGTCACAACCCCCTG+TGG - chr3_1:28524208-28524227 Msa0354970:intron 60.0%
TGTCCACAGGGGGTTGTGAC+AGG + chr3_1:28524214-28524233 None:intergenic 60.0%
! CTTGTTATCGACTGCCCCCG+GGG - chr3_1:28524516-28524535 Msa0354970:intron 60.0%
!! GTGCTTAAAGAGTGCCCCGG+GGG - chr3_1:28524646-28524665 Msa0354970:intron 60.0%
GCGCTCCGGGTCTCTTAATG+AGG + chr3_1:28527951-28527970 None:intergenic 60.0%
! TGCCCCCGGGGCACTCTTTA+AGG - chr3_1:28524528-28524547 Msa0354970:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 28518794 28528675 28518794 ID=Msa0354970;Name=Msa0354970
chr3_1 mRNA 28518794 28528675 28518794 ID=Msa0354970-mRNA-1;Parent=Msa0354970;Name=Msa0354970-mRNA-1;_AED=0.17;_eAED=0.17;_QI=209|1|1|1|0.82|0.88|18|247|480
chr3_1 exon 28518794 28519100 28518794 ID=Msa0354970-mRNA-1:exon:5959;Parent=Msa0354970-mRNA-1
chr3_1 exon 28519318 28519386 28519318 ID=Msa0354970-mRNA-1:exon:5958;Parent=Msa0354970-mRNA-1
chr3_1 exon 28519487 28519566 28519487 ID=Msa0354970-mRNA-1:exon:5957;Parent=Msa0354970-mRNA-1
chr3_1 exon 28519660 28519735 28519660 ID=Msa0354970-mRNA-1:exon:5956;Parent=Msa0354970-mRNA-1
chr3_1 exon 28520325 28520394 28520325 ID=Msa0354970-mRNA-1:exon:5955;Parent=Msa0354970-mRNA-1
chr3_1 exon 28520484 28520533 28520484 ID=Msa0354970-mRNA-1:exon:5954;Parent=Msa0354970-mRNA-1
chr3_1 exon 28521132 28521168 28521132 ID=Msa0354970-mRNA-1:exon:5953;Parent=Msa0354970-mRNA-1
chr3_1 exon 28521293 28521354 28521293 ID=Msa0354970-mRNA-1:exon:5952;Parent=Msa0354970-mRNA-1
chr3_1 exon 28521463 28521501 28521463 ID=Msa0354970-mRNA-1:exon:5951;Parent=Msa0354970-mRNA-1
chr3_1 exon 28522298 28522475 28522298 ID=Msa0354970-mRNA-1:exon:5950;Parent=Msa0354970-mRNA-1
chr3_1 exon 28523050 28523110 28523050 ID=Msa0354970-mRNA-1:exon:5949;Parent=Msa0354970-mRNA-1
chr3_1 exon 28523195 28523388 28523195 ID=Msa0354970-mRNA-1:exon:5948;Parent=Msa0354970-mRNA-1
chr3_1 exon 28523542 28523603 28523542 ID=Msa0354970-mRNA-1:exon:5947;Parent=Msa0354970-mRNA-1
chr3_1 exon 28524674 28524760 28524674 ID=Msa0354970-mRNA-1:exon:5946;Parent=Msa0354970-mRNA-1
chr3_1 exon 28524856 28524940 28524856 ID=Msa0354970-mRNA-1:exon:5945;Parent=Msa0354970-mRNA-1
chr3_1 exon 28525072 28525154 28525072 ID=Msa0354970-mRNA-1:exon:5944;Parent=Msa0354970-mRNA-1
chr3_1 exon 28526213 28526311 28526213 ID=Msa0354970-mRNA-1:exon:5943;Parent=Msa0354970-mRNA-1
chr3_1 exon 28528416 28528675 28528416 ID=Msa0354970-mRNA-1:exon:5942;Parent=Msa0354970-mRNA-1
chr3_1 five_prime_UTR 28528467 28528675 28528467 ID=Msa0354970-mRNA-1:five_prime_utr;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28528416 28528466 28528416 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28526213 28526311 28526213 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28525072 28525154 28525072 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28524856 28524940 28524856 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28524674 28524760 28524674 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28523542 28523603 28523542 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28523195 28523388 28523195 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28523050 28523110 28523050 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28522298 28522475 28522298 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28521463 28521501 28521463 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28521293 28521354 28521293 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28521132 28521168 28521132 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28520484 28520533 28520484 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28520325 28520394 28520325 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28519660 28519735 28519660 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28519487 28519566 28519487 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28519318 28519386 28519318 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 CDS 28519041 28519100 28519041 ID=Msa0354970-mRNA-1:cds;Parent=Msa0354970-mRNA-1
chr3_1 three_prime_UTR 28518794 28519040 28518794 ID=Msa0354970-mRNA-1:three_prime_utr;Parent=Msa0354970-mRNA-1
Gene Sequence

>Msa0354970

ATGGCCACTCAACCTCCTTCCGATTCTCTCGACGTCGACGACTACGTTTTGGATAATGGACCAGAAGGATTGTCATGGGACACATTTCATTATGTTTACGAGCTTGTACAAAAGGGAAATTTGGCCTTTCGAGACAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCTAGTGATCCAATCATCCTCGGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTAATGCATAGATCATCATCATCCTCAGAACATAGGCCATTGAGTGGGCTTGATCCCACAACACTTGCCGAACTGGGTTTGAAGGATGCTGCAAAGCTTGTGGAACTCCAAAGCAGTTCAGTAAAACCATACCTTTTGAAGGCTAATGCTCTTCTTCTGTTAGAGAAATATGACGTGGCTCGGGATGTTATTCTTTCTGGACTTCAAGTTGATCCTTTTAGTAATTCCCTTCGGGAATGTCTTCAAAGAGTGGAAACAGTATCATCTAGTTCAACTGGGAGGAGTACACATGCACAACCAGAGCGGAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCCTGTGGACATTCATTTTGCCGTTCATGTCTATTTCAGTCAATGGATCGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTGCTCATTAGCCCCAGAACATGTTCAATTAGTGTGACATTGAAGAGCATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGAATGACAGTTTAGTCAACATTGGTGTAGATATGCTCCCTCTTTTTGTCATGGATGTTGTCTTACCCTGTCAAAGGTTTCCACTAAATATATTTGAACCTCGTTATAGACTTATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATAATAGATGCTTCAACAGGTTCATTAGCAGAGTTTGGCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGTCGCTTTTATATAGAGATTGAAGGTCGTAGGAGATTTCGCAACCTCCGTTCTTGGGATCAAGATGGATATCGTGTTGCAGAAGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAAGGAAAGAGAGGATTTACTGGAATTGACGCATAATGCAGCAGAAAGTGCTCGAACATGGATAGGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGATTAGAGAAACTCGTGAATGTTGAAGGATTGATACCCTCATTAAGAGACCCGGAGCGCTTTAGTTTTTGGCTCGCTACCCTCTCGAATCGTAGGCCTTCAGAAAGATTGGATCTCCTACGCATTAGAGATACTACAGAGAGAATTAGACGAGGCCTGATATTTCTTCGAGCAGAGGAACAAGGATGCAGAATTCAGTAA
Protein sequence

>Msa0354970

MATQPPSDSLDVDDYVLDNGPEGLSWDTFHYVYELVQKGNLAFRDNRMEEAINFYSRANNIKSSDPIILGNRSAAYIRISQYLMHRSSSSSEHRPLSGLDPTTLAELGLKDAAKLVELQSSSVKPYLLKANALLLLEKYDVARDVILSGLQVDPFSNSLRECLQRVETVSSSSTGRSTHAQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLLISPRTCSISVTLKSIIQKNFPEEYAERKQENDSLVNIGVDMLPLFVMDVVLPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDASTGSLAEFGCEVEITECEPLPDGRFYIEIEGRRRFRNLRSWDQDGYRVAEVEWIQDIMPPEGTKEREDLLELTHNAAESARTWIGRAKEAARQDQRRLEKLVNVEGLIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ*