AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792970 MtrunA17_Chr3g0090051 92.427 581 34 3 1 572 1 580 0.0 1018
Msa0792970 MtrunA17_Chr7g0254111 30.752 439 278 6 126 547 13 442 1.81e-67 226
Msa0792970 MtrunA17_Chr6g0460811 32.676 355 233 3 203 552 79 432 3.93e-63 214
Msa0792970 MtrunA17_Chr5g0422761 28.247 308 183 7 254 535 150 445 1.45e-30 125
Msa0792970 MtrunA17_Chr1g0210161 27.922 308 184 7 254 535 156 451 5.14e-29 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792970 AT5G13760.1 59.038 603 174 7 1 567 1 566 0.0 706
Msa0792970 AT3G04440.1 28.970 466 300 10 116 570 36 481 1.38e-57 200
Msa0792970 AT3G03700.1 28.970 466 300 10 116 570 36 481 1.57e-57 200
Msa0792970 AT3G04440.2 29.194 459 294 10 116 563 13 451 2.48e-57 199
Msa0792970 AT5G17830.1 27.292 480 312 12 92 557 3 459 2.53e-36 142
Msa0792970 AT5G17830.2 27.751 418 268 11 154 557 41 438 1.14e-35 139
Msa0792970 AT1G25500.2 25.000 296 207 4 255 535 157 452 4.93e-18 87.8
Msa0792970 AT1G25500.3 25.000 296 207 4 255 535 99 394 8.72e-18 86.7
Msa0792970 AT1G25500.1 26.613 248 159 5 255 479 31 278 4.39e-15 76.6

Find 144 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGATTCAAATCACTGAATT+TGG 0.146968 5_3:+4825426 None:intergenic
CCATGTCTTCCTTCTCAAAT+AGG 0.235190 5_3:+4824247 None:intergenic
ATTAAAAGACTAATTAAATT+AGG 0.240903 5_3:+4822882 None:intergenic
CACCGTCGGTTGGAGGCTTT+TGG 0.251711 5_3:+4825560 None:intergenic
AGCTCAATTTGCTTCCTTAC+AGG 0.258213 5_3:-4824198 Msa0792970:CDS
ATTCTTCATTGGATACCTTT+TGG 0.272961 5_3:-4824085 Msa0792970:intron
ATTGATAAAGATGACGTTAC+TGG 0.273773 5_3:+4827145 None:intergenic
ATTCAAGTATTCAACTCTTT+TGG 0.277970 5_3:+4823170 None:intergenic
GGCAAGGTGCAATTAGAAAA+TGG 0.286876 5_3:-4825660 Msa0792970:CDS
TGAGAGCGTTGAGATTTCTT+AGG 0.291686 5_3:+4826655 None:intergenic
GCGATTGGAAATGGGTTATA+TGG 0.304192 5_3:-4825514 Msa0792970:CDS
TAATCTTGGAAGTGCTTGTT+TGG 0.306696 5_3:-4825161 Msa0792970:CDS
TTGTTAATATAACGGTTAGT+AGG 0.320823 5_3:-4825255 Msa0792970:CDS
CAAGAGCAATAGCTAGTAAT+TGG 0.327387 5_3:+4825824 None:intergenic
ATTCTCAGTGCTTCAATTGT+TGG 0.338370 5_3:+4825124 None:intergenic
GATTCTTGTGGATAACTATA+TGG 0.339387 5_3:-4825378 Msa0792970:CDS
GGTTGTTGTGGTGGTGGTGG+TGG 0.349063 5_3:+4826577 None:intergenic
ATTGGTGCTGGTGTTGGTAT+AGG 0.351324 5_3:+4826613 None:intergenic
TATTGTTAGGTATGCGTAGA+AGG 0.352283 5_3:-4822913 Msa0792970:three_prime_UTR
TGTTGCGCTCGTTGTTGTTT+GGG 0.356549 5_3:-4825052 Msa0792970:CDS
TCTTTACTCACATTCTTCAT+TGG 0.361425 5_3:-4824096 Msa0792970:CDS
AATCTTGGAAGTGCTTGTTT+GGG 0.366226 5_3:-4825160 Msa0792970:CDS
GGTGGTTGTTGTGGTGGTGG+TGG 0.371595 5_3:+4826574 None:intergenic
ACAATCCTCAAAGGGTTAGT+AGG 0.380125 5_3:+4826715 None:intergenic
TTGTTGCGCTCGTTGTTGTT+TGG 0.382253 5_3:-4825053 Msa0792970:CDS
GATATGAAAACTGCTCTTAG+TGG 0.384120 5_3:-4823207 Msa0792970:three_prime_UTR
TAATCCAGGGAATTAGAGAT+AGG 0.397214 5_3:-4823329 Msa0792970:three_prime_UTR
GGTGGTGGTTGTTGTGGTGG+TGG 0.401031 5_3:+4826571 None:intergenic
CTAATTTCGTCATTTAATCC+AGG 0.410254 5_3:-4823343 Msa0792970:three_prime_UTR
GTTATATCAGCATCTACTAT+TGG 0.412428 5_3:+4824222 None:intergenic
GAGGAATGTTGTTAATATAA+CGG 0.414847 5_3:-4825263 Msa0792970:CDS
TAAACCCTACTAACCCTTTG+AGG 0.414943 5_3:-4826720 Msa0792970:CDS
ATATGGACTTTAGCAGTAGT+TGG 0.416090 5_3:-4825361 Msa0792970:CDS
GGTGGTTGTGGAGTTTGAAT+TGG 0.416842 5_3:+4826595 None:intergenic
GATTTAGAGAAAGGTGAAGT+TGG 0.418904 5_3:-4826856 Msa0792970:CDS
CAGATTCTTGTACTAGTCCT+TGG 0.419684 5_3:+4825776 None:intergenic
TGTGGAGTTTGAATTGGTGC+TGG 0.421714 5_3:+4826601 None:intergenic
GGGTTAAGGGATTTAGAGAA+AGG 0.425648 5_3:-4826865 Msa0792970:CDS
ACTTACTACATGCTTGCGGC+TGG 0.429515 5_3:-4825400 Msa0792970:CDS
CATCGCATTGGTGTTGAGCT+TGG 0.429700 5_3:-4825305 Msa0792970:CDS
CTTGGACCACAGAGGTTATG+AGG 0.433740 5_3:-4825282 Msa0792970:CDS
AATCTTGATGGCTGAGGAAG+TGG 0.437026 5_3:-4823131 Msa0792970:three_prime_UTR
GTGTCATTGTTGTGGCTGCT+TGG 0.437806 5_3:-4824155 Msa0792970:CDS
GAAATGGGTTATATGGTTGT+TGG 0.440338 5_3:-4825507 Msa0792970:CDS
GCCTTTGGTTATCATCGCAT+TGG 0.440780 5_3:-4825317 Msa0792970:CDS
CATTGGTGTTGAGCTTGGCT+TGG 0.440783 5_3:-4825300 Msa0792970:CDS
AATGATGGAACTCCACCATA+TGG 0.446152 5_3:+4822940 None:intergenic
AGAGCGTTGACTCGTAATCT+TGG 0.447087 5_3:-4825175 Msa0792970:CDS
TAAAACAATTAAAGATCGTC+AGG 0.449254 5_3:-4823513 Msa0792970:CDS
ATGAAGGGTATAATGTTTCA+AGG 0.451587 5_3:-4826753 Msa0792970:CDS
CGTTGAGATTTCTTAGGAGG+AGG 0.452943 5_3:+4826661 None:intergenic
TCATAACAGATTGCAGCCTA+TGG 0.456525 5_3:-4824306 Msa0792970:intron
TTTCAGAAATGGCAATAGTT+GGG 0.457931 5_3:-4825014 Msa0792970:CDS
CATGTCTTCCTTCTCAAATA+GGG 0.466916 5_3:+4824248 None:intergenic
CAAGGACTAGTACAAGAATC+TGG 0.467966 5_3:-4825775 Msa0792970:CDS
CTGGCTTGAAGAGCCATCAT+TGG 0.473312 5_3:-4823092 Msa0792970:three_prime_UTR
ACCTAACAATAAAATAATGA+TGG 0.478479 5_3:+4822925 None:intergenic
TGTTAATATAACGGTTAGTA+GGG 0.478570 5_3:-4825254 Msa0792970:CDS
TTAACATAAAATAAAACTCA+TGG 0.479267 5_3:+4822846 None:intergenic
GTTTGAATTGGTGCTGGTGT+TGG 0.482355 5_3:+4826607 None:intergenic
CCAATACAAAATTCCAATGA+TGG 0.490519 5_3:+4823079 None:intergenic
CTTCTTGAATTAAGTGTCAC+CGG 0.495904 5_3:+4825886 None:intergenic
TGAAGAATGTGAGTAAAGAC+AGG 0.496211 5_3:+4824100 None:intergenic
TTGTGATGTCTCTTGCAGCC+GGG 0.496627 5_3:-4825600 Msa0792970:CDS
ACCTGTGGTGGTGGTTGTTG+TGG 0.496947 5_3:+4826565 None:intergenic
CAGATTGCAGCCTATGGAAG+AGG 0.497415 5_3:-4824300 Msa0792970:CDS
AAGAATCTGGTTCTGTTAAG+AGG 0.500285 5_3:-4825762 Msa0792970:CDS
AAAACCTATCTCTAATTCCC+TGG 0.500685 5_3:+4823325 None:intergenic
GACTTAGAAGATATACTTCA+AGG 0.502776 5_3:-4823445 Msa0792970:CDS
CAATCCTCAAAGGGTTAGTA+GGG 0.503463 5_3:+4826716 None:intergenic
CTTGTGTTCAAGGGAGTCCA+AGG 0.503627 5_3:-4825793 Msa0792970:CDS
ATAAAATGAACCATAAAAGT+TGG 0.504639 5_3:+4825637 None:intergenic
CAATAGTTGGGCATATGTAC+AGG 0.512027 5_3:-4825002 Msa0792970:intron
GGAGCTAGAAAGATGGATGA+TGG 0.512342 5_3:-4826901 Msa0792970:CDS
AAATCACTGAATTTGGACAT+AGG 0.515580 5_3:+4825433 None:intergenic
CTATTCATCACAATCCTCAA+AGG 0.517811 5_3:+4826706 None:intergenic
TAATTTCGTCATTTAATCCA+GGG 0.518496 5_3:-4823342 Msa0792970:three_prime_UTR
ACTAAGTAAATTCAAGATGA+AGG 0.521534 5_3:-4823239 Msa0792970:three_prime_UTR
CTCTATGTGTGTCATTGTTG+TGG 0.522338 5_3:-4824163 Msa0792970:CDS
GAGCGTTGAGATTTCTTAGG+AGG 0.523480 5_3:+4826658 None:intergenic
AAGCACTGAGAATTGTTGCT+AGG 0.524618 5_3:-4825114 Msa0792970:CDS
TGTGGTGGTGGTTGTTGTGG+TGG 0.524932 5_3:+4826568 None:intergenic
AAGTGAAGGAGCTAGAAAGA+TGG 0.528600 5_3:-4826908 Msa0792970:CDS
TTTGTGATGTCTCTTGCAGC+CGG 0.528803 5_3:-4825601 Msa0792970:CDS
TGAGATTTCTTAGGAGGAGG+AGG 0.532542 5_3:+4826664 None:intergenic
AGCCACTACATACTCCTGTA+AGG 0.533851 5_3:+4824184 None:intergenic
TTGAATTAAGTGTCACCGGT+TGG 0.535653 5_3:+4825890 None:intergenic
TATTGGAATGAAATAAATGT+GGG 0.535970 5_3:-4823062 Msa0792970:three_prime_UTR
TATTCATCACAATCCTCAAA+GGG 0.536329 5_3:+4826707 None:intergenic
GAGAATGTTGCTCATGGTCA+TGG 0.538173 5_3:-4826790 Msa0792970:CDS
TGCTTGCGGCTGGATTCTTG+TGG 0.540887 5_3:-4825390 Msa0792970:CDS
GTATATCTTCTAAGTCCCCT+TGG 0.542647 5_3:+4823452 None:intergenic
AGCACTGAGAATTGTTGCTA+GGG 0.543959 5_3:-4825113 Msa0792970:CDS
ACACCAACACCGTCGGTTGG+AGG 0.545410 5_3:+4825553 None:intergenic
CTTCTAAGTCCCCTTGGTGT+AGG 0.546621 5_3:+4823458 None:intergenic
AAAGTTGCAGCTTCCACTTG+TGG 0.550103 5_3:+4825709 None:intergenic
TTCCTTACAGGAGTATGTAG+TGG 0.550109 5_3:-4824186 Msa0792970:CDS
ACCACAACAACCACCACCAC+AGG 0.552003 5_3:-4826566 Msa0792970:intron
ATCGCATTGTATTACTTGAG+AGG 0.553720 5_3:-4825229 Msa0792970:CDS
TAAACATGATATTACAAGGA+TGG 0.557418 5_3:+4822996 None:intergenic
AAGCCTCCAACCGACGGTGT+TGG 0.558221 5_3:-4825556 Msa0792970:CDS
TGGACCACAAGTCACTTTAG+TGG 0.568408 5_3:+4823016 None:intergenic
GAGCAATAGCTAGTAATTGG+TGG 0.570206 5_3:+4825827 None:intergenic
TGAAAACTGCTCTTAGTGGA+AGG 0.575553 5_3:-4823203 Msa0792970:three_prime_UTR
TGTAAGGAAGCAAATTGAGC+TGG 0.577560 5_3:+4824200 None:intergenic
GAAATTAATTACATGTTCAG+TGG 0.579891 5_3:+4827048 None:intergenic
TGTTAGGTGGATGAAAGTGA+AGG 0.579987 5_3:-4826922 Msa0792970:intron
ATCTTGGAAGTGCTTGTTTG+GGG 0.582433 5_3:-4825159 Msa0792970:CDS
GTATTGGAATGAAATAAATG+TGG 0.585250 5_3:-4823063 Msa0792970:three_prime_UTR
TAAATAAACATGATATTACA+AGG 0.589674 5_3:+4822992 None:intergenic
CATTACAAAACCTCTTCCAT+AGG 0.590212 5_3:+4824290 None:intergenic
GAAGCAAATAAGAAGAATCC+CGG 0.590499 5_3:+4825582 None:intergenic
CAAACACCAACACCGTCGGT+TGG 0.593373 5_3:+4825550 None:intergenic
GAAAACTGCTCTTAGTGGAA+GGG 0.593757 5_3:-4823202 Msa0792970:three_prime_UTR
TGCTGGTGTTGGTATAGGAA+TGG 0.595051 5_3:+4826618 None:intergenic
CCTATTTGAGAAGGAAGACA+TGG 0.604555 5_3:-4824247 Msa0792970:CDS
AAGAAACATACCTGTGGTGG+TGG 0.610031 5_3:+4826556 None:intergenic
CACGTGGTCCCTATTTGAGA+AGG 0.610180 5_3:-4824256 Msa0792970:CDS
TTCCAAAAGCCTCCAACCGA+CGG 0.616758 5_3:-4825562 Msa0792970:CDS
TTTGCAGACTAGGATTGCAA+TGG 0.618762 5_3:-4823606 Msa0792970:intron
ATTGGCTGTACCTACACCAA+GGG 0.639295 5_3:-4823468 Msa0792970:CDS
ACCAATGCGATGATAACCAA+AGG 0.648788 5_3:+4825316 None:intergenic
GAAACAAACACCAACACCGT+CGG 0.650322 5_3:+4825546 None:intergenic
TAACAACTCACACAAGCATG+AGG 0.654342 5_3:+4823578 None:intergenic
GCCGCAAGCATGTAGTAAGT+AGG 0.655110 5_3:+4825403 None:intergenic
ACCTACTTACTACATGCTTG+CGG 0.656483 5_3:-4825404 Msa0792970:CDS
GGTGGTCATGATGATCATGA+AGG 0.663679 5_3:-4826769 Msa0792970:CDS
TGATGACGATGATGATGATG+AGG 0.665938 5_3:-4826818 Msa0792970:CDS
GATGTTGAGAATGTTGCTCA+TGG 0.673579 5_3:-4826796 Msa0792970:CDS
CACTGAGAATTGTTGCTAGG+GGG 0.674462 5_3:-4825111 Msa0792970:CDS
GCACTGAGAATTGTTGCTAG+GGG 0.677044 5_3:-4825112 Msa0792970:CDS
AATGCCACTAAAGTGACTTG+TGG 0.678107 5_3:-4823020 Msa0792970:three_prime_UTR
GTGGTCATGATGATCATGAA+GGG 0.680503 5_3:-4826768 Msa0792970:CDS
GTGGAGAGCGAATATAAACA+AGG 0.681249 5_3:+4825846 None:intergenic
AATTGGCTGTACCTACACCA+AGG 0.681948 5_3:-4823469 Msa0792970:CDS
AACATTCCTCATAACCTCTG+TGG 0.686877 5_3:+4825276 None:intergenic
GAGCTTGGCTTGGACCACAG+AGG 0.696479 5_3:-4825290 Msa0792970:CDS
AATGCGATGATAACCAAAGG+CGG 0.700321 5_3:+4825319 None:intergenic
TTGGCTGTACCTACACCAAG+GGG 0.705525 5_3:-4823467 Msa0792970:CDS
GAAGAATGTGAGTAAAGACA+GGG 0.705854 5_3:+4824101 None:intergenic
AATGTTGCTCATGGTCATGG+TGG 0.726262 5_3:-4826787 Msa0792970:CDS
TAATGGCATCACAAGACACG+TGG 0.731417 5_3:-4824272 Msa0792970:CDS
ATTGGAATGAAATAAATGTG+GGG 0.733464 5_3:-4823061 Msa0792970:three_prime_UTR
GAATGTGAGTAAAGACAGGG+TGG 0.767321 5_3:+4824104 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTAATTTTTTCAAAAT+GGG - chr5_3:4822995-4823014 Msa0792970:three_prime_UTR 10.0%
!!! AAATTAAAATTTTACACAAA+TGG + chr5_3:4823027-4823046 None:intergenic 10.0%
!!! AAATTTACATTTTAGTTAAA+GGG - chr5_3:4823699-4823718 Msa0792970:intron 10.0%
!!! TTATTGAAATTTACTTTTTT+TGG - chr5_3:4823835-4823854 Msa0792970:intron 10.0%
!! ATTAAAAGATATGAAAAAAT+TGG + chr5_3:4825949-4825968 None:intergenic 10.0%
!!! AATTTTTTCATATCTTTTAA+TGG - chr5_3:4825948-4825967 Msa0792970:intron 10.0%
!!! AAATTTATTTTAAAAATCCA+AGG + chr5_3:4826102-4826121 None:intergenic 10.0%
!! TACAAATTGTTTAAAAAATT+AGG + chr5_3:4826136-4826155 None:intergenic 10.0%
!!! TTTTTTAAACAATTTGTATT+TGG - chr5_3:4826138-4826157 Msa0792970:intron 10.0%
!!! TTTTTAAACAATTTGTATTT+GGG - chr5_3:4826139-4826158 Msa0792970:intron 10.0%
!!! ATTTTATATAAATTAGAGTT+AGG + chr5_3:4826182-4826201 None:intergenic 10.0%
!!! TTAAGTAAAAAGTTTTATTT+GGG + chr5_3:4826213-4826232 None:intergenic 10.0%
!!! TTTAAGTAAAAAGTTTTATT+TGG + chr5_3:4826214-4826233 None:intergenic 10.0%
!!! TTTTTGCTAATATTTTTTTT+TGG - chr5_3:4826707-4826726 Msa0792970:CDS 10.0%
!! ATTAAAAGACTAATTAAATT+AGG + chr5_3:4827111-4827130 None:intergenic 10.0%
!!! ATAACCTTAAATTTTTCAAA+TGG - chr5_3:4822916-4822935 Msa0792970:three_prime_UTR 15.0%
!!! TAACCTTAAATTTTTCAAAT+GGG - chr5_3:4822917-4822936 Msa0792970:three_prime_UTR 15.0%
!!! CTACTTTAATTTTTTCAAAA+TGG - chr5_3:4822994-4823013 Msa0792970:three_prime_UTR 15.0%
!!! TTTTTTTGTTTGTTTTTGTT+AGG - chr5_3:4823052-4823071 Msa0792970:three_prime_UTR 15.0%
!!! GAAATTTACATTTTAGTTAA+AGG - chr5_3:4823698-4823717 Msa0792970:intron 15.0%
!!! AAATTTACTTTTTTTGGTAA+AGG - chr5_3:4823841-4823860 Msa0792970:intron 15.0%
!!! TTATTTTTATTTTTGGTAAG+TGG - chr5_3:4823918-4823937 Msa0792970:intron 15.0%
!!! ACAAAGATTGTAATTTTTTA+AGG - chr5_3:4824012-4824031 Msa0792970:intron 15.0%
!!! CAAAGATTGTAATTTTTTAA+GGG - chr5_3:4824013-4824032 Msa0792970:intron 15.0%
!! AGATTTATATAAATAAGTCA+GGG + chr5_3:4825997-4826016 None:intergenic 15.0%
!! AAGATTTATATAAATAAGTC+AGG + chr5_3:4825998-4826017 None:intergenic 15.0%
!! GTTAAAAAAAAAATTAGTTC+GGG + chr5_3:4826074-4826093 None:intergenic 15.0%
!! GGTTAAAAAAAAAATTAGTT+CGG + chr5_3:4826075-4826094 None:intergenic 15.0%
!! TTATTATAAAGTCTTTAAGT+AGG - chr5_3:4826265-4826284 Msa0792970:intron 15.0%
!! TAAATAAACATGATATTACA+AGG + chr5_3:4827001-4827020 None:intergenic 15.0%
!!! TTTTTTGTACATATACTTTT+AGG - chr5_3:4827022-4827041 Msa0792970:intron 15.0%
!! TTAACATAAAATAAAACTCA+TGG + chr5_3:4827147-4827166 None:intergenic 15.0%
!!! TTTTTTGTTAATGTGTTAAG+AGG - chr5_3:4823628-4823647 Msa0792970:intron 20.0%
!! TAAATTTACATGTGTTCATT+TGG - chr5_3:4823989-4824008 Msa0792970:intron 20.0%
!! ATAAAATGAACCATAAAAGT+TGG + chr5_3:4824356-4824375 None:intergenic 20.0%
!!! TTATGGTTCATTTTATACTT+TGG - chr5_3:4824360-4824379 Msa0792970:intron 20.0%
!! ATGAACAATTGATTAGTATT+TGG - chr5_3:4825022-4825041 Msa0792970:CDS 20.0%
!! CTTGAATCATTTATACTATA+TGG + chr5_3:4825049-4825068 None:intergenic 20.0%
!!! CTAACTTTAAAAAAAATCCA+TGG - chr5_3:4825225-4825244 Msa0792970:CDS 20.0%
!!! ATCATAGTAAAATGTGATTT+TGG + chr5_3:4825255-4825274 None:intergenic 20.0%
!!! ATCTGAATTTTTACAACTAA+TGG - chr5_3:4825321-4825340 Msa0792970:CDS 20.0%
!!! AATTTTTACAACTAATGGTT+TGG - chr5_3:4825326-4825345 Msa0792970:CDS 20.0%
!! GTTAGGTAACTTAAAATAAT+TGG + chr5_3:4825650-4825669 None:intergenic 20.0%
!! TGATGAATTCAAATTTAGTT+AGG + chr5_3:4825667-4825686 None:intergenic 20.0%
!! TGAAAAAATTGGTCAAATAA+GGG + chr5_3:4825938-4825957 None:intergenic 20.0%
!! ATGAAAAAATTGGTCAAATA+AGG + chr5_3:4825939-4825958 None:intergenic 20.0%
!! GTGAACTAATAATAAAAAAC+TGG + chr5_3:4826315-4826334 None:intergenic 20.0%
!! TATTGGAATGAAATAAATGT+GGG - chr5_3:4826928-4826947 Msa0792970:intron 20.0%
!!! TCCATCATTATTTTATTGTT+AGG - chr5_3:4827064-4827083 Msa0792970:exon 20.0%
!! ACCTAACAATAAAATAATGA+TGG + chr5_3:4827068-4827087 None:intergenic 20.0%
! GAAATTAATTACATGTTCAG+TGG + chr5_3:4822945-4822964 None:intergenic 25.0%
!!! TTTTGTTTGTTTTTGTTAGG+TGG - chr5_3:4823055-4823074 Msa0792970:three_prime_UTR 25.0%
!!! AAAGTATTGACATGAACAAT+GGG + chr5_3:4823583-4823602 None:intergenic 25.0%
!!! TAAAGTATTGACATGAACAA+TGG + chr5_3:4823584-4823603 None:intergenic 25.0%
!!! TTTAGCTGTTTTCTTTGTAA+AGG - chr5_3:4823773-4823792 Msa0792970:intron 25.0%
!!! TTAGCTGTTTTCTTTGTAAA+GGG - chr5_3:4823774-4823793 Msa0792970:intron 25.0%
! TTGTTGAATTCAAATACTTG+AGG - chr5_3:4823878-4823897 Msa0792970:intron 25.0%
!!! GCATAATTCTTGCTTTTTTT+TGG - chr5_3:4824309-4824328 Msa0792970:intron 25.0%
! GAGGAATGTTGTTAATATAA+CGG - chr5_3:4824727-4824746 Msa0792970:intron 25.0%
! TTGTTAATATAACGGTTAGT+AGG - chr5_3:4824735-4824754 Msa0792970:intron 25.0%
! TGTTAATATAACGGTTAGTA+GGG - chr5_3:4824736-4824755 Msa0792970:intron 25.0%
!! ATGCAATCAATTTTCAGAAA+TGG - chr5_3:4824965-4824984 Msa0792970:intron 25.0%
!! TAAAATGTCGATTATAAGCT+AGG + chr5_3:4825096-4825115 None:intergenic 25.0%
! ATGACAACAAATTTGAAAGA+CGG + chr5_3:4825585-4825604 None:intergenic 25.0%
!! TATGTGATAATGTACAACAA+GGG + chr5_3:4825613-4825632 None:intergenic 25.0%
! AGGTAACTTAAAATAATTGG+TGG + chr5_3:4825647-4825666 None:intergenic 25.0%
! GAAAAAATTGGTCAAATAAG+GGG + chr5_3:4825937-4825956 None:intergenic 25.0%
! ATAAAGTCTTTAAGTAGGTA+AGG - chr5_3:4826270-4826289 Msa0792970:intron 25.0%
! TAAAGTCTTTAAGTAGGTAA+GGG - chr5_3:4826271-4826290 Msa0792970:intron 25.0%
!! AACTGGTTTAATTACAATGT+AGG + chr5_3:4826298-4826317 None:intergenic 25.0%
!! TTATCAAACAATCTGTTTTC+TGG + chr5_3:4826460-4826479 None:intergenic 25.0%
! TAAAACAATTAAAGATCGTC+AGG - chr5_3:4826477-4826496 Msa0792970:intron 25.0%
! TAATTTCGTCATTTAATCCA+GGG - chr5_3:4826648-4826667 Msa0792970:CDS 25.0%
! ACTAAGTAAATTCAAGATGA+AGG - chr5_3:4826751-4826770 Msa0792970:CDS 25.0%
!! ATTCAAGTATTCAACTCTTT+TGG + chr5_3:4826823-4826842 None:intergenic 25.0%
! GCCAATAAAAAAAATCTTGA+TGG - chr5_3:4826847-4826866 Msa0792970:CDS 25.0%
!!! GCCATCAAGATTTTTTTTAT+TGG + chr5_3:4826851-4826870 None:intergenic 25.0%
! GTATTGGAATGAAATAAATG+TGG - chr5_3:4826927-4826946 Msa0792970:intron 25.0%
! ATTGGAATGAAATAAATGTG+GGG - chr5_3:4826929-4826948 Msa0792970:intron 25.0%
! TAAACATGATATTACAAGGA+TGG + chr5_3:4826997-4827016 None:intergenic 25.0%
!!! TACTTTTAGGATATTCCATA+TGG - chr5_3:4827035-4827054 Msa0792970:intron 25.0%
ATTGATAAAGATGACGTTAC+TGG + chr5_3:4822848-4822867 None:intergenic 30.0%
GCACCCATTTGAAAAATTTA+AGG + chr5_3:4822923-4822942 None:intergenic 30.0%
!! AAAGATGGATGATGGAAAAA+AGG - chr5_3:4823097-4823116 Msa0792970:three_prime_UTR 30.0%
! ATGATGGAAAAAAGGAAGAA+GGG - chr5_3:4823105-4823124 Msa0792970:three_prime_UTR 30.0%
AAAAAAGGAAGAAGGGTTAA+GGG - chr5_3:4823112-4823131 Msa0792970:three_prime_UTR 30.0%
! ATGAAGGGTATAATGTTTCA+AGG - chr5_3:4823237-4823256 Msa0792970:three_prime_UTR 30.0%
TATTCATCACAATCCTCAAA+GGG + chr5_3:4823286-4823305 None:intergenic 30.0%
AAGAAAAAGAAACATACCTG+TGG + chr5_3:4823443-4823462 None:intergenic 30.0%
!!! GTTGTTCATGTCAGTTTTTT+TGG - chr5_3:4823502-4823521 Msa0792970:CDS 30.0%
AGCTCAATTGAATTGAAGTA+AGG + chr5_3:4823554-4823573 None:intergenic 30.0%
!! TTTTAGTTAAAGGGTTATGC+AGG - chr5_3:4823708-4823727 Msa0792970:intron 30.0%
TTTCTTTGTAAAGGGTAATG+AGG - chr5_3:4823782-4823801 Msa0792970:intron 30.0%
TTCTTTGTAAAGGGTAATGA+GGG - chr5_3:4823783-4823802 Msa0792970:intron 30.0%
!!! ATTCTTGCTTTTTTTTGGCA+AGG - chr5_3:4824314-4824333 Msa0792970:intron 30.0%
! TAGAAAATGGCCAACTTTTA+TGG - chr5_3:4824343-4824362 Msa0792970:intron 30.0%
AAATCACTGAATTTGGACAT+AGG + chr5_3:4824560-4824579 None:intergenic 30.0%
TCGATTCAAATCACTGAATT+TGG + chr5_3:4824567-4824586 None:intergenic 30.0%
GATTCTTGTGGATAACTATA+TGG - chr5_3:4824612-4824631 Msa0792970:intron 30.0%
! TTTTCAGAAATGGCAATAGT+TGG - chr5_3:4824975-4824994 Msa0792970:intron 30.0%
TTTCAGAAATGGCAATAGTT+GGG - chr5_3:4824976-4824995 Msa0792970:intron 30.0%
TACGTTTATTATGGAATCCT+CGG - chr5_3:4825356-4825375 Msa0792970:CDS 30.0%
TCAAATAAACACACGAATGA+GGG + chr5_3:4825404-4825423 None:intergenic 30.0%
!! CACATAGTTCTTTTTCGTAT+TGG + chr5_3:4825444-4825463 None:intergenic 30.0%
CTATGTGACTTCAATTTGAT+TGG - chr5_3:4825457-4825476 Msa0792970:CDS 30.0%
TTTCGGATTATATGATCTGT+TGG - chr5_3:4825536-4825555 Msa0792970:CDS 30.0%
TGTTGGATTCCTTTATTACA+CGG - chr5_3:4825553-4825572 Msa0792970:CDS 30.0%
AACAAATTTGAAAGACGGTA+GGG + chr5_3:4825580-4825599 None:intergenic 30.0%
! CTATGTGATAATGTACAACA+AGG + chr5_3:4825614-4825633 None:intergenic 30.0%
GTTATATCAGCATCTACTAT+TGG + chr5_3:4825771-4825790 None:intergenic 30.0%
TCTTTACTCACATTCTTCAT+TGG - chr5_3:4825894-4825913 Msa0792970:CDS 30.0%
! ATTCTTCATTGGATACCTTT+TGG - chr5_3:4825905-4825924 Msa0792970:intron 30.0%
!! GTTTGTCTACTATGCTATTT+TGG - chr5_3:4825970-4825989 Msa0792970:intron 30.0%
!! ATTTTAAAAATCCAAGGACG+CGG + chr5_3:4826096-4826115 None:intergenic 30.0%
!! ATTTGGGTTTCTAAAGTTCA+AGG - chr5_3:4826155-4826174 Msa0792970:intron 30.0%
GACTTAGAAGATATACTTCA+AGG - chr5_3:4826545-4826564 Msa0792970:intron 30.0%
CTAATTTCGTCATTTAATCC+AGG - chr5_3:4826647-4826666 Msa0792970:CDS 30.0%
! AAAAAAAATCTTGATGGCTG+AGG - chr5_3:4826853-4826872 Msa0792970:CDS 30.0%
CCAATACAAAATTCCAATGA+TGG + chr5_3:4826914-4826933 None:intergenic 30.0%
! CCATCATTGGAATTTTGTAT+TGG - chr5_3:4826911-4826930 Msa0792970:CDS 30.0%
!!! TTTTAGGATATTCCATATGG+TGG - chr5_3:4827038-4827057 Msa0792970:intron 30.0%
!! GATGATGGAAAAAAGGAAGA+AGG - chr5_3:4823104-4823123 Msa0792970:three_prime_UTR 35.0%
GAAAAAAGGAAGAAGGGTTA+AGG - chr5_3:4823111-4823130 Msa0792970:three_prime_UTR 35.0%
GATTTAGAGAAAGGTGAAGT+TGG - chr5_3:4823134-4823153 Msa0792970:three_prime_UTR 35.0%
CTATTCATCACAATCCTCAA+AGG + chr5_3:4823287-4823306 None:intergenic 35.0%
AAAAAGAAACATACCTGTGG+TGG + chr5_3:4823440-4823459 None:intergenic 35.0%
!!! ATTTTTGGTAAGTGGCTATG+AGG - chr5_3:4823926-4823945 Msa0792970:intron 35.0%
!! TTTTTGGTAAGTGGCTATGA+GGG - chr5_3:4823927-4823946 Msa0792970:intron 35.0%
!!! TTCATTTTTTCAGCACCAAC+CGG - chr5_3:4824085-4824104 Msa0792970:intron 35.0%
CTTCTTGAATTAAGTGTCAC+CGG + chr5_3:4824107-4824126 None:intergenic 35.0%
CAAGAGCAATAGCTAGTAAT+TGG + chr5_3:4824169-4824188 None:intergenic 35.0%
! TGTGTGTTTTCTTGTGTTCA+AGG - chr5_3:4824187-4824206 Msa0792970:CDS 35.0%
! GTGTGTTTTCTTGTGTTCAA+GGG - chr5_3:4824188-4824207 Msa0792970:CDS 35.0%
!! AAGAATCTGGTTCTGTTAAG+AGG - chr5_3:4824228-4824247 Msa0792970:CDS 35.0%
! GATGTATTTTCTTCCACAAG+TGG - chr5_3:4824268-4824287 Msa0792970:CDS 35.0%
GAAGCAAATAAGAAGAATCC+CGG + chr5_3:4824411-4824430 None:intergenic 35.0%
!! TGTTTCATTGCTTTTGCGAT+TGG - chr5_3:4824461-4824480 Msa0792970:intron 35.0%
!! ATTGCTTTTGCGATTGGAAA+TGG - chr5_3:4824467-4824486 Msa0792970:intron 35.0%
!! TTGCTTTTGCGATTGGAAAT+GGG - chr5_3:4824468-4824487 Msa0792970:intron 35.0%
!! GAAATGGGTTATATGGTTGT+TGG - chr5_3:4824483-4824502 Msa0792970:intron 35.0%
ATATGGACTTTAGCAGTAGT+TGG - chr5_3:4824629-4824648 Msa0792970:intron 35.0%
!!! GAACTTTTATTTTCCGCCTT+TGG - chr5_3:4824658-4824677 Msa0792970:intron 35.0%
ATCGCATTGTATTACTTGAG+AGG - chr5_3:4824761-4824780 Msa0792970:intron 35.0%
!! TAATCTTGGAAGTGCTTGTT+TGG - chr5_3:4824829-4824848 Msa0792970:intron 35.0%
!! AATCTTGGAAGTGCTTGTTT+GGG - chr5_3:4824830-4824849 Msa0792970:intron 35.0%
ATTCTCAGTGCTTCAATTGT+TGG + chr5_3:4824869-4824888 None:intergenic 35.0%
! AATGTGATTTTGGATGACCA+TGG + chr5_3:4825245-4825264 None:intergenic 35.0%
GGCTATGAGTACGTTTATTA+TGG - chr5_3:4825347-4825366 Msa0792970:CDS 35.0%
ACGTTTATTATGGAATCCTC+GGG - chr5_3:4825357-4825376 Msa0792970:CDS 35.0%
CTCAAATAAACACACGAATG+AGG + chr5_3:4825405-4825424 None:intergenic 35.0%
ATTTGAGTGTGTTGAACACT+CGG - chr5_3:4825418-4825437 Msa0792970:CDS 35.0%
CAACAAATTTGAAAGACGGT+AGG + chr5_3:4825581-4825600 None:intergenic 35.0%
CATTACAAAACCTCTTCCAT+AGG + chr5_3:4825703-4825722 None:intergenic 35.0%
!! CTATGGAAGAGGTTTTGTAA+TGG - chr5_3:4825701-4825720 Msa0792970:CDS 35.0%
CATGTCTTCCTTCTCAAATA+GGG + chr5_3:4825745-4825764 None:intergenic 35.0%
GAAGAATGTGAGTAAAGACA+GGG + chr5_3:4825892-4825911 None:intergenic 35.0%
TGAAGAATGTGAGTAAAGAC+AGG + chr5_3:4825893-4825912 None:intergenic 35.0%
! TTCATTGGATACCTTTTGGT+TGG - chr5_3:4825909-4825928 Msa0792970:intron 35.0%
!!! TTTTTTTTTAACCGCGTCCT+TGG - chr5_3:4826082-4826101 Msa0792970:intron 35.0%
!!! ACTTGTTGATTTTGCAGACT+AGG - chr5_3:4826374-4826393 Msa0792970:intron 35.0%
GTTAAAAACTGGTCGTGAAT+TGG - chr5_3:4826504-4826523 Msa0792970:intron 35.0%
TAATCCAGGGAATTAGAGAT+AGG - chr5_3:4826661-4826680 Msa0792970:CDS 35.0%
AAAACCTATCTCTAATTCCC+TGG + chr5_3:4826668-4826687 None:intergenic 35.0%
GATATGAAAACTGCTCTTAG+TGG - chr5_3:4826783-4826802 Msa0792970:CDS 35.0%
!!! TGGTTTTGTTGAGAATGATC+TGG - chr5_3:4826879-4826898 Msa0792970:CDS 35.0%
TATTGTTAGGTATGCGTAGA+AGG - chr5_3:4827077-4827096 Msa0792970:exon 35.0%
TGTTAGGTGGATGAAAGTGA+AGG - chr5_3:4823068-4823087 Msa0792970:three_prime_UTR 40.0%
AAGTGAAGGAGCTAGAAAGA+TGG - chr5_3:4823082-4823101 Msa0792970:three_prime_UTR 40.0%
GGGTTAAGGGATTTAGAGAA+AGG - chr5_3:4823125-4823144 Msa0792970:three_prime_UTR 40.0%
! TGATGACGATGATGATGATG+AGG - chr5_3:4823172-4823191 Msa0792970:three_prime_UTR 40.0%
GATGTTGAGAATGTTGCTCA+TGG - chr5_3:4823194-4823213 Msa0792970:three_prime_UTR 40.0%
GTGGTCATGATGATCATGAA+GGG - chr5_3:4823222-4823241 Msa0792970:three_prime_UTR 40.0%
TAAACCCTACTAACCCTTTG+AGG - chr5_3:4823270-4823289 Msa0792970:three_prime_UTR 40.0%
! CAATCCTCAAAGGGTTAGTA+GGG + chr5_3:4823277-4823296 None:intergenic 40.0%
! ACAATCCTCAAAGGGTTAGT+AGG + chr5_3:4823278-4823297 None:intergenic 40.0%
!! TGAGAGCGTTGAGATTTCTT+AGG + chr5_3:4823338-4823357 None:intergenic 40.0%
TTGAATTAAGTGTCACCGGT+TGG + chr5_3:4824103-4824122 None:intergenic 40.0%
GTGGAGAGCGAATATAAACA+AGG + chr5_3:4824147-4824166 None:intergenic 40.0%
GAGCAATAGCTAGTAATTGG+TGG + chr5_3:4824166-4824185 None:intergenic 40.0%
CAGATTCTTGTACTAGTCCT+TGG + chr5_3:4824217-4824236 None:intergenic 40.0%
! CAAGGACTAGTACAAGAATC+TGG - chr5_3:4824215-4824234 Msa0792970:CDS 40.0%
GGCAAGGTGCAATTAGAAAA+TGG - chr5_3:4824330-4824349 Msa0792970:intron 40.0%
!! GCGATTGGAAATGGGTTATA+TGG - chr5_3:4824476-4824495 Msa0792970:intron 40.0%
ACCTACTTACTACATGCTTG+CGG - chr5_3:4824586-4824605 Msa0792970:intron 40.0%
AATGCGATGATAACCAAAGG+CGG + chr5_3:4824674-4824693 None:intergenic 40.0%
ACCAATGCGATGATAACCAA+AGG + chr5_3:4824677-4824696 None:intergenic 40.0%
AACATTCCTCATAACCTCTG+TGG + chr5_3:4824717-4824736 None:intergenic 40.0%
!! ATCTTGGAAGTGCTTGTTTG+GGG - chr5_3:4824831-4824850 Msa0792970:intron 40.0%
!! AAGCACTGAGAATTGTTGCT+AGG - chr5_3:4824876-4824895 Msa0792970:intron 40.0%
! AGCACTGAGAATTGTTGCTA+GGG - chr5_3:4824877-4824896 Msa0792970:intron 40.0%
CAATAGTTGGGCATATGTAC+AGG - chr5_3:4824988-4825007 Msa0792970:intron 40.0%
CATCGAACTCTCTTCTGTTT+CGG - chr5_3:4825519-4825538 Msa0792970:CDS 40.0%
TCATAACAGATTGCAGCCTA+TGG - chr5_3:4825684-4825703 Msa0792970:CDS 40.0%
CCATGTCTTCCTTCTCAAAT+AGG + chr5_3:4825746-4825765 None:intergenic 40.0%
CCTATTTGAGAAGGAAGACA+TGG - chr5_3:4825743-4825762 Msa0792970:CDS 40.0%
TGTAAGGAAGCAAATTGAGC+TGG + chr5_3:4825793-4825812 None:intergenic 40.0%
! AGCTCAATTTGCTTCCTTAC+AGG - chr5_3:4825792-4825811 Msa0792970:CDS 40.0%
! TTCCTTACAGGAGTATGTAG+TGG - chr5_3:4825804-4825823 Msa0792970:CDS 40.0%
! CTCTATGTGTGTCATTGTTG+TGG - chr5_3:4825827-4825846 Msa0792970:CDS 40.0%
!! AATAAGGGGTACCAACCAAA+AGG + chr5_3:4825923-4825942 None:intergenic 40.0%
TTTGCAGACTAGGATTGCAA+TGG - chr5_3:4826384-4826403 Msa0792970:intron 40.0%
TAACAACTCACACAAGCATG+AGG + chr5_3:4826415-4826434 None:intergenic 40.0%
!! CGTCAGGCTTTGTTAAAAAC+TGG - chr5_3:4826493-4826512 Msa0792970:intron 40.0%
GTATATCTTCTAAGTCCCCT+TGG + chr5_3:4826541-4826560 None:intergenic 40.0%
TGAAAACTGCTCTTAGTGGA+AGG - chr5_3:4826787-4826806 Msa0792970:CDS 40.0%
GAAAACTGCTCTTAGTGGAA+GGG - chr5_3:4826788-4826807 Msa0792970:CDS 40.0%
AATGCCACTAAAGTGACTTG+TGG - chr5_3:4826970-4826989 Msa0792970:intron 40.0%
! AATGATGGAACTCCACCATA+TGG + chr5_3:4827053-4827072 None:intergenic 40.0%
GGAGCTAGAAAGATGGATGA+TGG - chr5_3:4823089-4823108 Msa0792970:three_prime_UTR 45.0%
GAGAATGTTGCTCATGGTCA+TGG - chr5_3:4823200-4823219 Msa0792970:three_prime_UTR 45.0%
AATGTTGCTCATGGTCATGG+TGG - chr5_3:4823203-4823222 Msa0792970:three_prime_UTR 45.0%
GGTGGTCATGATGATCATGA+AGG - chr5_3:4823221-4823240 Msa0792970:three_prime_UTR 45.0%
TGAGATTTCTTAGGAGGAGG+AGG + chr5_3:4823329-4823348 None:intergenic 45.0%
CGTTGAGATTTCTTAGGAGG+AGG + chr5_3:4823332-4823351 None:intergenic 45.0%
!! GAGCGTTGAGATTTCTTAGG+AGG + chr5_3:4823335-4823354 None:intergenic 45.0%
!! TGCTGGTGTTGGTATAGGAA+TGG + chr5_3:4823375-4823394 None:intergenic 45.0%
!! ATTGGTGCTGGTGTTGGTAT+AGG + chr5_3:4823380-4823399 None:intergenic 45.0%
!! GTTTGAATTGGTGCTGGTGT+TGG + chr5_3:4823386-4823405 None:intergenic 45.0%
TGTGGAGTTTGAATTGGTGC+TGG + chr5_3:4823392-4823411 None:intergenic 45.0%
GGTGGTTGTGGAGTTTGAAT+TGG + chr5_3:4823398-4823417 None:intergenic 45.0%
AAGAAACATACCTGTGGTGG+TGG + chr5_3:4823437-4823456 None:intergenic 45.0%
AAAGTTGCAGCTTCCACTTG+TGG + chr5_3:4824284-4824303 None:intergenic 45.0%
TTTGTGATGTCTCTTGCAGC+CGG - chr5_3:4824389-4824408 Msa0792970:intron 45.0%
GAAACAAACACCAACACCGT+CGG + chr5_3:4824447-4824466 None:intergenic 45.0%
GCCTTTGGTTATCATCGCAT+TGG - chr5_3:4824673-4824692 Msa0792970:intron 45.0%
!! AGAGCGTTGACTCGTAATCT+TGG - chr5_3:4824815-4824834 Msa0792970:intron 45.0%
GCACTGAGAATTGTTGCTAG+GGG - chr5_3:4824878-4824897 Msa0792970:intron 45.0%
CACTGAGAATTGTTGCTAGG+GGG - chr5_3:4824879-4824898 Msa0792970:intron 45.0%
! TTGTTGCGCTCGTTGTTGTT+TGG - chr5_3:4824937-4824956 Msa0792970:intron 45.0%
!! TGTTGCGCTCGTTGTTGTTT+GGG - chr5_3:4824938-4824957 Msa0792970:intron 45.0%
ACACACGAATGAGGGAAATG+TGG + chr5_3:4825396-4825415 None:intergenic 45.0%
TAATGGCATCACAAGACACG+TGG - chr5_3:4825718-4825737 Msa0792970:CDS 45.0%
AGCCACTACATACTCCTGTA+AGG + chr5_3:4825809-4825828 None:intergenic 45.0%
GAATGTGAGTAAAGACAGGG+TGG + chr5_3:4825889-4825908 None:intergenic 45.0%
AATTGGCTGTACCTACACCA+AGG - chr5_3:4826521-4826540 Msa0792970:intron 45.0%
ATTGGCTGTACCTACACCAA+GGG - chr5_3:4826522-4826541 Msa0792970:intron 45.0%
! AATCTTGATGGCTGAGGAAG+TGG - chr5_3:4826859-4826878 Msa0792970:CDS 45.0%
! TGGACCACAAGTCACTTTAG+TGG + chr5_3:4826977-4826996 None:intergenic 45.0%
!!! ACATTTTTTATTTTTATTTT+TGG - chr5_3:4823911-4823930 Msa0792970:intron 5.0%
!!! ACTAAATTTATTTTTTAATA+TGG - chr5_3:4824055-4824074 Msa0792970:intron 5.0%
!!! TTTAAAATAAATTTATAATC+AGG - chr5_3:4826108-4826127 Msa0792970:intron 5.0%
!!! CTAATTTATATAAAATTTTA+TGG - chr5_3:4826186-4826205 Msa0792970:intron 5.0%
CTTGTGTTCAAGGGAGTCCA+AGG - chr5_3:4824197-4824216 Msa0792970:CDS 50.0%
TTGTGATGTCTCTTGCAGCC+GGG - chr5_3:4824390-4824409 Msa0792970:intron 50.0%
TTCCAAAAGCCTCCAACCGA+CGG - chr5_3:4824428-4824447 Msa0792970:intron 50.0%
GCCGCAAGCATGTAGTAAGT+AGG + chr5_3:4824590-4824609 None:intergenic 50.0%
ACTTACTACATGCTTGCGGC+TGG - chr5_3:4824590-4824609 Msa0792970:intron 50.0%
!! CATCGCATTGGTGTTGAGCT+TGG - chr5_3:4824685-4824704 Msa0792970:intron 50.0%
!! CATTGGTGTTGAGCTTGGCT+TGG - chr5_3:4824690-4824709 Msa0792970:intron 50.0%
CTTGGACCACAGAGGTTATG+AGG - chr5_3:4824708-4824727 Msa0792970:intron 50.0%
! TAGGGGGCTGAATTTGCTTG+AGG - chr5_3:4824895-4824914 Msa0792970:intron 50.0%
! AGGGGGCTGAATTTGCTTGA+GGG - chr5_3:4824896-4824915 Msa0792970:intron 50.0%
ATGAGGGAAATGTGGTGACC+AGG + chr5_3:4825388-4825407 None:intergenic 50.0%
CGGTAGGGTCCGTGTAATAA+AGG + chr5_3:4825565-4825584 None:intergenic 50.0%
CAGATTGCAGCCTATGGAAG+AGG - chr5_3:4825690-4825709 Msa0792970:CDS 50.0%
CACGTGGTCCCTATTTGAGA+AGG - chr5_3:4825734-4825753 Msa0792970:CDS 50.0%
! GTGTCATTGTTGTGGCTGCT+TGG - chr5_3:4825835-4825854 Msa0792970:CDS 50.0%
TTGGCTGTACCTACACCAAG+GGG - chr5_3:4826523-4826542 Msa0792970:intron 50.0%
! CTTCTAAGTCCCCTTGGTGT+AGG + chr5_3:4826535-4826554 None:intergenic 50.0%
! CTGGCTTGAAGAGCCATCAT+TGG - chr5_3:4826898-4826917 Msa0792970:CDS 50.0%
!! TGTGGTGGTGGTTGTTGTGG+TGG + chr5_3:4823425-4823444 None:intergenic 55.0%
ACCACAACAACCACCACCAC+AGG - chr5_3:4823424-4823443 Msa0792970:exon 55.0%
!! ACCTGTGGTGGTGGTTGTTG+TGG + chr5_3:4823428-4823447 None:intergenic 55.0%
CAAACACCAACACCGTCGGT+TGG + chr5_3:4824443-4824462 None:intergenic 55.0%
TGCTTGCGGCTGGATTCTTG+TGG - chr5_3:4824600-4824619 Msa0792970:intron 55.0%
!! TGTGGTGGTGGTGGTGGTTG+TGG + chr5_3:4823410-4823429 None:intergenic 60.0%
!! GGTTGTTGTGGTGGTGGTGG+TGG + chr5_3:4823416-4823435 None:intergenic 60.0%
!! GGTGGTTGTTGTGGTGGTGG+TGG + chr5_3:4823419-4823438 None:intergenic 60.0%
! GGTGGTGGTTGTTGTGGTGG+TGG + chr5_3:4823422-4823441 None:intergenic 60.0%
!! CACCGTCGGTTGGAGGCTTT+TGG + chr5_3:4824433-4824452 None:intergenic 60.0%
AAGCCTCCAACCGACGGTGT+TGG - chr5_3:4824434-4824453 Msa0792970:intron 60.0%
! ACACCAACACCGTCGGTTGG+AGG + chr5_3:4824440-4824459 None:intergenic 60.0%
!! GAGCTTGGCTTGGACCACAG+AGG - chr5_3:4824700-4824719 Msa0792970:intron 60.0%
TGGAATCCTCGGGTCGAACC+TGG - chr5_3:4825367-4825386 Msa0792970:CDS 60.0%
TGGTGACCAGGTTCGACCCG+AGG + chr5_3:4825376-4825395 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 4822829 4827183 4822829 ID=Msa0792970;Name=Msa0792970
chr5_3 mRNA 4822829 4827183 4822829 ID=Msa0792970-mRNA-1;Parent=Msa0792970;Name=Msa0792970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|0.75|0.8|5|610|572
chr5_3 exon 4822829 4823621 4822829 ID=Msa0792970-mRNA-1:exon:1869;Parent=Msa0792970-mRNA-1
chr5_3 exon 4824086 4824319 4824086 ID=Msa0792970-mRNA-1:exon:1868;Parent=Msa0792970-mRNA-1
chr5_3 exon 4825003 4825914 4825003 ID=Msa0792970-mRNA-1:exon:1867;Parent=Msa0792970-mRNA-1
chr5_3 exon 4826567 4826938 4826567 ID=Msa0792970-mRNA-1:exon:1866;Parent=Msa0792970-mRNA-1
chr5_3 exon 4827060 4827183 4827060 ID=Msa0792970-mRNA-1:exon:1865;Parent=Msa0792970-mRNA-1
chr5_3 five_prime_UTR 4827078 4827183 4827078 ID=Msa0792970-mRNA-1:five_prime_utr;Parent=Msa0792970-mRNA-1
chr5_3 CDS 4827060 4827077 4827060 ID=Msa0792970-mRNA-1:cds;Parent=Msa0792970-mRNA-1
chr5_3 CDS 4826567 4826938 4826567 ID=Msa0792970-mRNA-1:cds;Parent=Msa0792970-mRNA-1
chr5_3 CDS 4825003 4825914 4825003 ID=Msa0792970-mRNA-1:cds;Parent=Msa0792970-mRNA-1
chr5_3 CDS 4824086 4824319 4824086 ID=Msa0792970-mRNA-1:cds;Parent=Msa0792970-mRNA-1
chr5_3 CDS 4823439 4823621 4823439 ID=Msa0792970-mRNA-1:cds;Parent=Msa0792970-mRNA-1
chr5_3 three_prime_UTR 4822829 4823438 4822829 ID=Msa0792970-mRNA-1:three_prime_utr;Parent=Msa0792970-mRNA-1
Gene Sequence

>Msa0792970

ATGGGTGCCACTGAACATGTGGATGAAAGTGAAGGAGCTAGAAAGATGGATGATGGAAAAAAGGAAGAAGGGTTAAGGGATTTAGAGAAAGGTGAAGTTGGAAAGAATGATGTTGATGATGACGATGATGATGATGAGGATGTTGAGAATGTTGCTCATGGTCATGGTGGTCATGATGATCATGAAGGGTATAATGTTTCAAGGTTTCATAGATTAAACCCTACTAACCCTTTGAGGATTGTGATGAATAGCAATACAAGAGTTGCAAAACCTCCTCCTCCTAAGAAATCTCAACGCTCTCAAACTCATACACGTTCCATTCCTATACCAACACCAGCACCAATTCAAACTCCACAACCACCACCACCACCACAACAACCACCACCACAGCACCAACCGGTGACACTTAATTCAAGAAGATATACTAACAGAATATCCTTGTTTATATTCGCTCTCCACCAATTACTAGCTATTGCTCTTGTGTGTTTTCTTGTGTTCAAGGGAGTCCAAGGACTAGTACAAGAATCTGGTTCTGTTAAGAGGAAAGAAAAAAGAGTGTTGATGTATTTTCTTCCACAAGTGGAAGCTGCAACTTTTATGAGCATAATTCTTGCTTTTTTTTGGCAAGGTGCAATTAGAAAATGGCCAACTTTTATGGTTCATTTTATACTTTGGTTTACTTTTGTGATGTCTCTTGCAGCCGGGATTCTTCTTATTTGCTTCCAAAAGCCTCCAACCGACGGTGTTGGTGTTTGTTTCATTGCTTTTGCGATTGGAAATGGGTTATATGGTTGTTGGATTAGTCATAGAATTAAATTTTGTTGTAAGATATTGACTTTATCGCTTCAACCTATGTCCAAATTCAGTGATTTGAATCGACCTACTTACTACATGCTTGCGGCTGGATTCTTGTGGATAACTATATGGACTTTAGCAGTAGTTGGAGCTTTGAACTTTTATTTTCCGCCTTTGGTTATCATCGCATTGGTGTTGAGCTTGGCTTGGACCACAGAGGTTATGAGGAATGTTGTTAATATAACGGTTAGTAGGGTTATCGCATTGTATTACTTGAGAGGAATGCAATCTAGCACACAATTTTGCTTTCTGAGAGCGTTGACTCGTAATCTTGGAAGTGCTTGTTTGGGGTCTCTATTTGTGCCAACAATTGAAGCACTGAGAATTGTTGCTAGGGGGCTGAATTTGCTTGAGGGAGAAGATGAGTTCATGTTTTGTTGCGCTCGTTGTTGTTTGGGAGTCATGCAATCAATTTTCAGAAATGGCAATAGTTGGGCATATGTACAGATTGCAGCCTATGGAAGAGGTTTTGTAATGGCATCACAAGACACGTGGTCCCTATTTGAGAAGGAAGACATGGTGCCAATAGTAGATGCTGATATAACCAGCTCAATTTGCTTCCTTACAGGAGTATGTAGTGGCTCTATGTGTGTCATTGTTGTGGCTGCTTGGACTCACACTGTACACAGAAGTTTCACAGCCACCCTGTCTTTACTCACATTCTTCATTGGATACCTTTTGACTAGGATTGCAATGGCAGTGCCTCATGCTTGTGTGAGTTGTTATTATGTATGCTATGCTGAAAATCCAGAAAACAGATTGTTTGATAAAACAATTAAAGATCGTCAGGCTTTGTTAAAAACTGGTCGTGAATTGGCTGTACCTACACCAAGGGGACTTAGAAGATATACTTCAAGGTCTTAA
Protein sequence

>Msa0792970

MGATEHVDESEGARKMDDGKKEEGLRDLEKGEVGKNDVDDDDDDDEDVENVAHGHGGHDDHEGYNVSRFHRLNPTNPLRIVMNSNTRVAKPPPPKKSQRSQTHTRSIPIPTPAPIQTPQPPPPPQQPPPQHQPVTLNSRRYTNRISLFIFALHQLLAIALVCFLVFKGVQGLVQESGSVKRKEKRVLMYFLPQVEAATFMSIILAFFWQGAIRKWPTFMVHFILWFTFVMSLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYGCWISHRIKFCCKILTLSLQPMSKFSDLNRPTYYMLAAGFLWITIWTLAVVGALNFYFPPLVIIALVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFCFLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFCCARCCLGVMQSIFRNGNSWAYVQIAAYGRGFVMASQDTWSLFEKEDMVPIVDADITSSICFLTGVCSGSMCVIVVAAWTHTVHRSFTATLSLLTFFIGYLLTRIAMAVPHACVSCYYVCYAENPENRLFDKTIKDRQALLKTGRELAVPTPRGLRRYTSRS*