Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128650 | XP_024639480.1 | 96.875 | 128 | 4 | 0 | 1 | 128 | 38 | 165 | 4.89e-85 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128650 | I3SMD1 | 96.875 | 128 | 4 | 0 | 1 | 128 | 38 | 165 | 2.34e-85 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa0128650 | 0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa0022550 | Msa0128650 | 0.806291 | 8.835283e-50 | -8.615850e-47 |
| Msa0022750 | Msa0128650 | -0.815675 | 8.188165e-52 | -8.615850e-47 |
| Msa0027390 | Msa0128650 | 0.802026 | 6.819788e-49 | -8.615850e-47 |
| Msa0039250 | Msa0128650 | 0.802751 | 4.834254e-49 | -8.615850e-47 |
| Msa0045490 | Msa0128650 | 0.809643 | 1.709624e-50 | -8.615850e-47 |
| Msa0055070 | Msa0128650 | 0.836140 | 1.114354e-56 | -8.615850e-47 |
| Msa0070430 | Msa0128650 | 0.807132 | 5.869114e-50 | -8.615850e-47 |
| Msa0077450 | Msa0128650 | 0.803367 | 3.605596e-49 | -8.615850e-47 |
| Msa0081650 | Msa0128650 | 0.805697 | 1.177722e-49 | -8.615850e-47 |
| Msa0096580 | Msa0128650 | 0.804162 | 2.465866e-49 | -8.615850e-47 |
| Msa0097950 | Msa0128650 | 0.816870 | 4.425008e-52 | -8.615850e-47 |
| Msa0100160 | Msa0128650 | 0.810667 | 1.028496e-50 | -8.615850e-47 |
| Msa0101020 | Msa0128650 | 0.830812 | 2.378298e-55 | -8.615850e-47 |
| Msa0105520 | Msa0128650 | 0.814010 | 1.915274e-51 | -8.615850e-47 |
| Msa0108870 | Msa0128650 | 0.823912 | 1.073019e-53 | -8.615850e-47 |
| Msa0116790 | Msa0128650 | 0.813360 | 2.662863e-51 | -8.615850e-47 |
| Msa0128650 | Msa0140170 | 0.827210 | 1.774126e-54 | -8.615850e-47 |
| Msa0128650 | Msa0142500 | 0.803748 | 3.006491e-49 | -8.615850e-47 |
| Msa0128650 | Msa0145110 | 0.822883 | 1.866825e-53 | -8.615850e-47 |
| Msa0128650 | Msa0165300 | 0.807215 | 5.636026e-50 | -8.615850e-47 |
| Msa0128650 | Msa0170140 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0128650 | Msa0174690 | 0.988596 | 1.216646e-174 | -8.615850e-47 |
| Msa0128650 | Msa0178510 | 0.811474 | 6.875703e-51 | -8.615850e-47 |
| Msa0128650 | Msa0181230 | 0.808623 | 2.828112e-50 | -8.615850e-47 |
| Msa0128650 | Msa0193540 | 0.838501 | 2.769898e-57 | -8.615850e-47 |
| Msa0128650 | Msa0198520 | 0.833621 | 4.800118e-56 | -8.615850e-47 |
| Msa0128650 | Msa0198530 | 0.841615 | 4.268452e-58 | -8.615850e-47 |
| Msa0128650 | Msa0235470 | 0.831697 | 1.440932e-55 | -8.615850e-47 |
| Msa0128650 | Msa0244930 | 0.808306 | 3.303698e-50 | -8.615850e-47 |
| Msa0128650 | Msa0264530 | 0.810934 | 9.006585e-51 | -8.615850e-47 |
| Msa0128650 | Msa0274630 | 0.830249 | 3.266018e-55 | -8.615850e-47 |
| Msa0128650 | Msa0276920 | 0.815639 | 8.340990e-52 | -8.615850e-47 |
| Msa0128650 | Msa0296980 | -0.811257 | 7.665642e-51 | -8.615850e-47 |
| Msa0128650 | Msa0314060 | 0.822040 | 2.930060e-53 | -8.615850e-47 |
| Msa0128650 | Msa0318720 | 0.840586 | 7.951564e-58 | -8.615850e-47 |
| Msa0128650 | Msa0320610 | 0.805464 | 1.318050e-49 | -8.615850e-47 |
| Msa0128650 | Msa0342290 | 0.810554 | 1.088179e-50 | -8.615850e-47 |
| Msa0128650 | Msa0343190 | 0.808450 | 3.078181e-50 | -8.615850e-47 |
| Msa0128650 | Msa0346990 | 0.807778 | 4.280195e-50 | -8.615850e-47 |
| Msa0128650 | Msa0377440 | 0.803729 | 3.034030e-49 | -8.615850e-47 |
| Msa0128650 | Msa0384670 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0128650 | Msa0392200 | 0.813930 | 1.994271e-51 | -8.615850e-47 |
| Msa0128650 | Msa0410300 | 0.819344 | 1.220311e-52 | -8.615850e-47 |
| Msa0128650 | Msa0413730 | 0.818528 | 1.869928e-52 | -8.615850e-47 |
| Msa0128650 | Msa0458780 | 0.824591 | 7.431180e-54 | -8.615850e-47 |
| Msa0128650 | Msa0461590 | 0.829197 | 5.890760e-55 | -8.615850e-47 |
| Msa0128650 | Msa0464900 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0128650 | Msa0484840 | 0.807068 | 6.055846e-50 | -8.615850e-47 |
| Msa0128650 | Msa0487780 | 0.812204 | 4.769042e-51 | -8.615850e-47 |
| Msa0128650 | Msa0517090 | 0.819638 | 1.045473e-52 | -8.615850e-47 |
| Msa0128650 | Msa0519390 | 0.821827 | 3.282224e-53 | -8.615850e-47 |
| Msa0128650 | Msa0526940 | 0.813610 | 2.345911e-51 | -8.615850e-47 |
| Msa0128650 | Msa0578090 | 0.806052 | 9.920670e-50 | -8.615850e-47 |
| Msa0128650 | Msa0584550 | 0.816887 | 4.386552e-52 | -8.615850e-47 |
| Msa0128650 | Msa0586850 | 0.801886 | 7.286632e-49 | -8.615850e-47 |
| Msa0128650 | Msa0587190 | 0.814862 | 1.241263e-51 | -8.615850e-47 |
| Msa0128650 | Msa0602120 | 0.808132 | 3.599309e-50 | -8.615850e-47 |
| Msa0128650 | Msa0620330 | 0.800418 | 1.455038e-48 | -8.615850e-47 |
| Msa0128650 | Msa0626680 | 0.803030 | 4.234049e-49 | -8.615850e-47 |
| Msa0128650 | Msa0628500 | 0.806527 | 7.876836e-50 | -8.615850e-47 |
| Msa0128650 | Msa0664760 | 0.813490 | 2.493187e-51 | -8.615850e-47 |
| Msa0128650 | Msa0679550 | 0.820235 | 7.635325e-53 | -8.615850e-47 |
| Msa0128650 | Msa0682950 | 0.819258 | 1.276272e-52 | -8.615850e-47 |
| Msa0128650 | Msa0693100 | 0.800644 | 1.308181e-48 | -8.615850e-47 |
| Msa0128650 | Msa0710270 | 0.830847 | 2.332121e-55 | -8.615850e-47 |
| Msa0128650 | Msa0732600 | 0.807920 | 3.992467e-50 | -8.615850e-47 |
| Msa0128650 | Msa0735620 | -0.808403 | 3.151409e-50 | -8.615850e-47 |
| Msa0128650 | Msa0744090 | 0.825750 | 3.952852e-54 | -8.615850e-47 |
| Msa0128650 | Msa0744100 | 0.822517 | 2.270362e-53 | -8.615850e-47 |
| Msa0128650 | Msa0750250 | 0.802144 | 6.449524e-49 | -8.615850e-47 |
| Msa0128650 | Msa0773590 | 0.830214 | 3.330450e-55 | -8.615850e-47 |
| Msa0128650 | Msa0788110 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0128650 | Msa0788120 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa0128650 | Msa0792970 | 0.819006 | 1.456423e-52 | -8.615850e-47 |
| Msa0128650 | Msa0811040 | 0.835565 | 1.558738e-56 | -8.615850e-47 |
| Msa0128650 | Msa0820250 | 0.811021 | 8.620928e-51 | -8.615850e-47 |
| Msa0128650 | Msa0825270 | 0.816937 | 4.274937e-52 | -8.615850e-47 |
| Msa0128650 | Msa0825280 | 0.831289 | 1.815812e-55 | -8.615850e-47 |
| Msa0128650 | Msa0836500 | 0.801865 | 7.360292e-49 | -8.615850e-47 |
| Msa0128650 | Msa0851470 | 0.828215 | 1.017476e-54 | -8.615850e-47 |
| Msa0128650 | Msa0866400 | 0.817895 | 2.601539e-52 | -8.615850e-47 |
| Msa0128650 | Msa0873860 | 0.801147 | 1.032835e-48 | -8.615850e-47 |
| Msa0128650 | Msa0930400 | -0.808045 | 3.755996e-50 | -8.615850e-47 |
| Msa0128650 | Msa0939000 | 0.816530 | 5.274172e-52 | -8.615850e-47 |
| Msa0128650 | Msa0957870 | 0.806324 | 8.694138e-50 | -8.615850e-47 |
| Msa0128650 | Msa0957970 | 0.802511 | 5.419408e-49 | -8.615850e-47 |
| Msa0128650 | Msa0975940 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0128650 | Msa1010460 | 0.812507 | 4.094503e-51 | -8.615850e-47 |
| Msa0128650 | Msa1021510 | 0.805442 | 1.332555e-49 | -8.615850e-47 |
| Msa0128650 | Msa1031770 | 0.814537 | 1.464555e-51 | -8.615850e-47 |
| Msa0128650 | Msa1031930 | 0.801899 | 7.242632e-49 | -8.615850e-47 |
| Msa0128650 | Msa1032170 | 0.823138 | 1.627263e-53 | -8.615850e-47 |
| Msa0128650 | Msa1038080 | 0.806530 | 7.867202e-50 | -8.615850e-47 |
| Msa0128650 | Msa1040520 | 0.821956 | 3.064132e-53 | -8.615850e-47 |
| Msa0128650 | Msa1053200 | 0.848583 | 5.588472e-60 | -8.615850e-47 |
| Msa0128650 | Msa1063420 | 0.822101 | 2.836686e-53 | -8.615850e-47 |
| Msa0128650 | Msa1070840 | 0.813584 | 2.377177e-51 | -8.615850e-47 |
| Msa0128650 | Msa1095620 | 0.802418 | 5.664434e-49 | -8.615850e-47 |
| Msa0128650 | Msa1098270 | 0.824591 | 7.427580e-54 | -8.615850e-47 |
| Msa0128650 | Msa1105500 | 0.806738 | 7.111286e-50 | -8.615850e-47 |
| Msa0128650 | Msa1113010 | 0.811258 | 7.660685e-51 | -8.615850e-47 |
| Msa0128650 | Msa1113590 | 0.811550 | 6.619831e-51 | -8.615850e-47 |
| Msa0128650 | Msa1118760 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0128650 | Msa1127770 | 0.822373 | 2.452418e-53 | -8.615850e-47 |
| Msa0128650 | Msa1128330 | 0.801894 | 7.260145e-49 | -8.615850e-47 |
| Msa0128650 | Msa1130530 | 0.827558 | 1.464363e-54 | -8.615850e-47 |
| Msa0128650 | Msa1130670 | -0.820191 | 7.813811e-53 | -8.615850e-47 |
| Msa0128650 | Msa1133570 | 0.807972 | 3.892885e-50 | -8.615850e-47 |
| Msa0128650 | Msa1152510 | 0.821485 | 3.937248e-53 | -8.615850e-47 |
| Msa0128650 | Msa1158660 | 0.822362 | 2.466518e-53 | -8.615850e-47 |
| Msa0128650 | Msa1177780 | 0.810074 | 1.381097e-50 | -8.615850e-47 |
| Msa0128650 | Msa1198880 | 0.801563 | 8.489239e-49 | -8.615850e-47 |
| Msa0128650 | Msa1214320 | 0.813076 | 3.072948e-51 | -8.615850e-47 |
| Msa0128650 | Msa1226610 | 0.800893 | 1.164111e-48 | -8.615850e-47 |
| Msa0128650 | Msa1250110 | 0.804670 | 1.932757e-49 | -8.615850e-47 |
| Msa0128650 | Msa1250730 | 0.812018 | 5.234727e-51 | -8.615850e-47 |
| Msa0128650 | Msa1280620 | 0.821385 | 4.153227e-53 | -8.615850e-47 |
| Msa0128650 | Msa1286550 | 0.809428 | 1.901736e-50 | -8.615850e-47 |
| Msa0128650 | Msa1294080 | 0.808441 | 3.092847e-50 | -8.615850e-47 |
| Msa0128650 | Msa1294960 | 0.815955 | 7.089897e-52 | -8.615850e-47 |
| Msa0128650 | Msa1320820 | 0.826585 | 2.501956e-54 | -8.615850e-47 |
| Msa0128650 | Msa1341490 | 0.813374 | 2.644264e-51 | -8.615850e-47 |
| Msa0128650 | Msa1357080 | 0.803803 | 2.927601e-49 | -8.615850e-47 |
| Msa0128650 | Msa1359920 | 0.825360 | 4.891270e-54 | -8.615850e-47 |
| Msa0128650 | Msa1366300 | 0.826886 | 2.120390e-54 | -8.615850e-47 |
| Msa0128650 | Msa1371240 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0128650 | Msa1371640 | 0.803163 | 3.973915e-49 | -8.615850e-47 |
| Msa0128650 | Msa1372150 | 0.802383 | 5.757996e-49 | -8.615850e-47 |
| Msa0128650 | Msa1376200 | 0.809682 | 1.677221e-50 | -8.615850e-47 |
| Msa0128650 | Msa1398890 | 0.800365 | 1.491128e-48 | -8.615850e-47 |
| Msa0128650 | Msa1400070 | 0.804001 | 2.663808e-49 | -8.615850e-47 |
| Msa0128650 | Msa1402270 | 0.800587 | 1.344097e-48 | -8.615850e-47 |
| Msa0128650 | Msa1410420 | 0.803973 | 2.698959e-49 | -8.615850e-47 |
| Msa0128650 | Msa1418920 | 0.802892 | 4.522599e-49 | -8.615850e-47 |
| Msa0128650 | Msa1422840 | 0.830141 | 3.471485e-55 | -8.615850e-47 |
| Msa0128650 | Msa1426570 | 0.825679 | 4.110910e-54 | -8.615850e-47 |
| Msa0128650 | Msa1433220 | 0.807563 | 4.756220e-50 | -8.615850e-47 |
| Msa0128650 | Msa1445220 | 0.805036 | 1.620355e-49 | -8.615850e-47 |
| Msa0128650 | Msa1454530 | 0.807048 | 6.114487e-50 | -8.615850e-47 |
| Msa0128650 | Msa1457430 | 0.804061 | 2.587876e-49 | -8.615850e-47 |
| Msa0128650 | Msa1463600 | 0.807302 | 5.401055e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128650 | MtrunA17_Chr1g0195361 | 96.875 | 128 | 4 | 0 | 1 | 128 | 38 | 165 | 4.50e-89 | 255 |
| Msa0128650 | MtrunA17_Chr1g0195381 | 50.407 | 123 | 56 | 2 | 3 | 120 | 31 | 153 | 9.51e-43 | 138 |
| Msa0128650 | MtrunA17_Chr7g0269431 | 49.587 | 121 | 31 | 2 | 2 | 122 | 37 | 127 | 1.15e-32 | 112 |
| Msa0128650 | MtrunA17_Chr6g0485071 | 33.333 | 108 | 69 | 2 | 3 | 107 | 42 | 149 | 5.66e-20 | 80.1 |
| Msa0128650 | MtrunA17_Chr7g0249501 | 30.172 | 116 | 75 | 3 | 4 | 115 | 49 | 162 | 1.73e-13 | 63.5 |
| Msa0128650 | MtrunA17_Chr7g0243261 | 29.670 | 91 | 62 | 2 | 2 | 91 | 60 | 149 | 2.09e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128650 | AT1G02816.1 | 59.167 | 120 | 48 | 1 | 3 | 121 | 39 | 158 | 2.55e-49 | 155 |
| Msa0128650 | AT4G02360.1 | 62.609 | 115 | 43 | 0 | 3 | 117 | 36 | 150 | 1.70e-48 | 152 |
| Msa0128650 | AT4G02370.1 | 60.526 | 114 | 44 | 1 | 3 | 115 | 39 | 152 | 2.98e-48 | 152 |
| Msa0128650 | AT1G02813.1 | 51.351 | 111 | 54 | 0 | 3 | 113 | 32 | 142 | 1.70e-38 | 127 |
| Msa0128650 | AT3G07460.1 | 36.000 | 125 | 65 | 6 | 4 | 124 | 38 | 151 | 8.39e-15 | 67.4 |
| Msa0128650 | AT3G07460.2 | 36.000 | 125 | 65 | 6 | 4 | 124 | 38 | 151 | 2.92e-14 | 67.4 |
| Msa0128650 | AT5G19590.1 | 29.907 | 107 | 73 | 1 | 3 | 107 | 38 | 144 | 5.01e-14 | 64.7 |
| Msa0128650 | AT5G19590.2 | 29.907 | 107 | 73 | 1 | 3 | 107 | 38 | 144 | 5.01e-14 | 64.7 |
| Msa0128650 | AT5G37070.1 | 26.786 | 112 | 78 | 3 | 2 | 112 | 60 | 168 | 2.67e-12 | 60.8 |
| Msa0128650 | AT5G19860.1 | 30.275 | 109 | 71 | 3 | 2 | 107 | 42 | 148 | 1.69e-11 | 58.9 |
| Msa0128650 | AT3G07470.3 | 32.710 | 107 | 65 | 4 | 4 | 106 | 39 | 142 | 5.18e-11 | 57.0 |
| Msa0128650 | AT3G07470.2 | 32.710 | 107 | 65 | 4 | 4 | 106 | 39 | 142 | 7.01e-11 | 57.0 |
| Msa0128650 | AT3G07470.1 | 32.710 | 107 | 65 | 4 | 4 | 106 | 39 | 142 | 7.63e-11 | 57.0 |
Find 29 sgRNAs with CRISPR-Local
Find 31 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGATTACTTCTGCTGGTTT+TGG | 0.248892 | 1_3:+58484678 | Msa0128650:CDS |
| TGTTGAAGTTTCTTCAATTT+AGG | 0.268351 | 1_3:+58484776 | Msa0128650:CDS |
| ATTGACCTGTTTCTCTGTTA+AGG | 0.276277 | 1_3:-58484464 | None:intergenic |
| TTGACCTGTTTCTCTGTTAA+GGG | 0.318122 | 1_3:-58484463 | None:intergenic |
| GAATACCCAATTGCTCCTTT+TGG | 0.335755 | 1_3:-58484441 | None:intergenic |
| CTTCTTCCAAAAGGAGCAAT+TGG | 0.352750 | 1_3:+58484435 | Msa0128650:CDS |
| TCTGTTGGGATTACTTCTGC+TGG | 0.400761 | 1_3:+58484672 | Msa0128650:CDS |
| GAATGCCCTCAGTGTGGTTG+TGG | 0.403933 | 1_3:+58484717 | Msa0128650:CDS |
| TATTCCCTTAACAGAGAAAC+AGG | 0.430305 | 1_3:+58484459 | Msa0128650:CDS |
| GTGGTGTGATTTCGCAGAAT+AGG | 0.437695 | 1_3:+58484559 | Msa0128650:CDS |
| AACCACACTGAGGGCATTCA+AGG | 0.446234 | 1_3:-58484713 | None:intergenic |
| CCAATGGGTCTTCTTCCAAA+AGG | 0.464533 | 1_3:+58484426 | Msa0128650:CDS |
| GATAATCATCTGAGGTTAAA+CGG | 0.466866 | 1_3:+58484750 | Msa0128650:CDS |
| TACGATCTTCTAATGGAATA+CGG | 0.472455 | 1_3:+58484399 | None:intergenic |
| AATGCCCTCAGTGTGGTTGT+GGG | 0.473689 | 1_3:+58484718 | Msa0128650:CDS |
| TATTGTTGAGGTTTCTCGTA+AGG | 0.475808 | 1_3:+58484632 | Msa0128650:CDS |
| ATGGAATACGGTTTCCCAAT+GGG | 0.477542 | 1_3:+58484411 | Msa0128650:CDS |
| TTCTTCCAAAAGGAGCAATT+GGG | 0.488774 | 1_3:+58484436 | Msa0128650:CDS |
| CCACAAAAGCAAAATCTTGA+CGG | 0.495996 | 1_3:-58484604 | None:intergenic |
| ATTGTTGAGGTTTCTCGTAA+GGG | 0.528099 | 1_3:+58484633 | Msa0128650:CDS |
| GAATAGGCTTTATAAACTCA+AGG | 0.537506 | 1_3:+58484575 | Msa0128650:CDS |
| AATGGAATACGGTTTCCCAA+TGG | 0.576232 | 1_3:+58484410 | None:intergenic |
| TTTGTGGTTGAATATTGTTG+AGG | 0.605032 | 1_3:+58484620 | Msa0128650:CDS |
| AATAGGCTTTATAAACTCAA+GGG | 0.613735 | 1_3:+58484576 | Msa0128650:CDS |
| AGCTACAAATCTACTATCAG+TGG | 0.618877 | 1_3:+58484540 | Msa0128650:CDS |
| TTGATTGCGATAATCATCTG+AGG | 0.632187 | 1_3:+58484742 | Msa0128650:CDS |
| CAAACCCACAACCACACTGA+GGG | 0.636398 | 1_3:-58484722 | None:intergenic |
| TTCCTTGAATGCCCTCAGTG+TGG | 0.651724 | 1_3:+58484711 | Msa0128650:CDS |
| TCAAACCCACAACCACACTG+AGG | 0.728360 | 1_3:-58484723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATATTGATTTTTCTGT+TGG | + | chr1_3:58484657-58484676 | Msa0128650:CDS | 20.0% |
| !!! | ATGATATTGATTTTTCTGTT+GGG | + | chr1_3:58484658-58484677 | Msa0128650:CDS | 20.0% |
| !! | AATAGGCTTTATAAACTCAA+GGG | + | chr1_3:58484576-58484595 | Msa0128650:CDS | 25.0% |
| ! | GAATAGGCTTTATAAACTCA+AGG | + | chr1_3:58484575-58484594 | Msa0128650:CDS | 30.0% |
| TTTGTGGTTGAATATTGTTG+AGG | + | chr1_3:58484620-58484639 | Msa0128650:CDS | 30.0% | |
| ! | GATAATCATCTGAGGTTAAA+CGG | + | chr1_3:58484750-58484769 | Msa0128650:CDS | 30.0% |
| TTCTTCCAAAAGGAGCAATT+GGG | + | chr1_3:58484436-58484455 | Msa0128650:CDS | 35.0% | |
| TATTCCCTTAACAGAGAAAC+AGG | + | chr1_3:58484459-58484478 | Msa0128650:CDS | 35.0% | |
| ! | TTGACCTGTTTCTCTGTTAA+GGG | - | chr1_3:58484466-58484485 | None:intergenic | 35.0% |
| ! | ATTGACCTGTTTCTCTGTTA+AGG | - | chr1_3:58484467-58484486 | None:intergenic | 35.0% |
| AGCTACAAATCTACTATCAG+TGG | + | chr1_3:58484540-58484559 | Msa0128650:CDS | 35.0% | |
| CCACAAAAGCAAAATCTTGA+CGG | - | chr1_3:58484607-58484626 | None:intergenic | 35.0% | |
| TATTGTTGAGGTTTCTCGTA+AGG | + | chr1_3:58484632-58484651 | Msa0128650:CDS | 35.0% | |
| ATTGTTGAGGTTTCTCGTAA+GGG | + | chr1_3:58484633-58484652 | Msa0128650:CDS | 35.0% | |
| TTGATTGCGATAATCATCTG+AGG | + | chr1_3:58484742-58484761 | Msa0128650:CDS | 35.0% | |
| ATGGAATACGGTTTCCCAAT+GGG | + | chr1_3:58484411-58484430 | Msa0128650:CDS | 40.0% | |
| !! | CTTTTGGAAGAAGACCCATT+GGG | - | chr1_3:58484428-58484447 | None:intergenic | 40.0% |
| CTTCTTCCAAAAGGAGCAAT+TGG | + | chr1_3:58484435-58484454 | Msa0128650:CDS | 40.0% | |
| ! | GAATACCCAATTGCTCCTTT+TGG | - | chr1_3:58484444-58484463 | None:intergenic | 40.0% |
| !! | CCGTCAAGATTTTGCTTTTG+TGG | + | chr1_3:58484604-58484623 | Msa0128650:CDS | 40.0% |
| !! | CCTTTTGGAAGAAGACCCAT+TGG | - | chr1_3:58484429-58484448 | None:intergenic | 45.0% |
| CCAATGGGTCTTCTTCCAAA+AGG | + | chr1_3:58484426-58484445 | Msa0128650:CDS | 45.0% | |
| GTGGTGTGATTTCGCAGAAT+AGG | + | chr1_3:58484559-58484578 | Msa0128650:CDS | 45.0% | |
| TCTGTTGGGATTACTTCTGC+TGG | + | chr1_3:58484672-58484691 | Msa0128650:CDS | 45.0% | |
| !!! | GGGATTACTTCTGCTGGTTT+TGG | + | chr1_3:58484678-58484697 | Msa0128650:CDS | 45.0% |
| TTCCTTGAATGCCCTCAGTG+TGG | + | chr1_3:58484711-58484730 | Msa0128650:CDS | 50.0% | |
| !! | AACCACACTGAGGGCATTCA+AGG | - | chr1_3:58484716-58484735 | None:intergenic | 50.0% |
| AATGCCCTCAGTGTGGTTGT+GGG | + | chr1_3:58484718-58484737 | Msa0128650:CDS | 50.0% | |
| CAAACCCACAACCACACTGA+GGG | - | chr1_3:58484725-58484744 | None:intergenic | 50.0% | |
| TCAAACCCACAACCACACTG+AGG | - | chr1_3:58484726-58484745 | None:intergenic | 50.0% | |
| GAATGCCCTCAGTGTGGTTG+TGG | + | chr1_3:58484717-58484736 | Msa0128650:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58484411 | 58484797 | 58484411 | ID=Msa0128650;Name=Msa0128650 |
| chr1_3 | mRNA | 58484411 | 58484797 | 58484411 | ID=Msa0128650-mRNA-1;Parent=Msa0128650;Name=Msa0128650-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|1|1|0|128 |
| chr1_3 | exon | 58484411 | 58484797 | 58484411 | ID=Msa0128650-mRNA-1:exon:18780;Parent=Msa0128650-mRNA-1 |
| chr1_3 | CDS | 58484411 | 58484797 | 58484411 | ID=Msa0128650-mRNA-1:cds;Parent=Msa0128650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
