AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607580 MtrunA17_Chr4g0039271 92.439 529 30 3 1 529 1 519 0.0 875
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607580 AT1G51450.1 56.733 453 162 8 17 448 70 509 6.41e-158 460

Find 158 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTGGTTTGGTATAA+AGG 0.175383 4_2:-54507225 Msa0607580:CDS
TTTGAAAATCAAGTTGAAAA+TGG 0.186697 4_2:-54503644 Msa0607580:CDS
GAAGTGTATCCATGGAAATT+AGG 0.190715 4_2:+54508237 None:intergenic
TATGGTGAAGGAGATGTTAT+TGG 0.240154 4_2:-54507294 Msa0607580:CDS
GGGTATGATGGGAATAGTTT+TGG 0.260452 4_2:-54507381 Msa0607580:CDS
TTAACCTCCGGCAACGAAAT+TGG 0.268536 4_2:+54507870 None:intergenic
AGATAAAGGTAGTGAGGTTA+GGG 0.291160 4_2:-54507464 Msa0607580:CDS
GAGATAAAGGTAGTGAGGTT+AGG 0.301462 4_2:-54507465 Msa0607580:CDS
AAGGCTTTGAGGGAGAATTA+TGG 0.304820 4_2:-54507327 Msa0607580:CDS
TCAACCATTGGCTTGGGAAT+TGG 0.306015 4_2:+54503683 None:intergenic
AAGTGTATCCATGGAAATTA+GGG 0.338418 4_2:+54508238 None:intergenic
TTGAAAATCAAGTTGAAAAT+GGG 0.342475 4_2:-54503643 Msa0607580:CDS
TTGTAACTTGAAAATAGATA+TGG 0.351619 4_2:+54503107 None:intergenic
ATGGTGAAGGAGATGTTATT+GGG 0.353591 4_2:-54507293 Msa0607580:CDS
GGTGGATCTTCCTTAGCATC+TGG 0.361382 4_2:+54507183 None:intergenic
GGAAGAACCAATTTCGTTGC+CGG 0.373865 4_2:-54507877 Msa0607580:CDS
GTTCGTGTGGTTGTTATTGT+TGG 0.379535 4_2:+54507692 None:intergenic
AGGCTTTGAGGGAGAATTAT+GGG 0.380543 4_2:-54507326 Msa0607580:CDS
AATGGAGAAGGGTGATTTGC+AGG 0.380670 4_2:-54507412 Msa0607580:CDS
GAAAGTTGCTTCTGCTTCTT+CGG 0.383566 4_2:+54507918 None:intergenic
GACTAACCAGGCACAACTTT+AGG 0.383651 4_2:+54507162 None:intergenic
TGTCTCCACCGTGGTTGATA+TGG 0.383829 4_2:-54508099 Msa0607580:CDS
TCCCTCCAACGACGGAAAAT+CGG 0.387502 4_2:-54508042 Msa0607580:CDS
TGAAGAGGAAGATGAAGAAA+TGG 0.391962 4_2:-54508198 Msa0607580:CDS
TTCTTAATATTATTAAATCC+AGG 0.398791 4_2:-54503209 Msa0607580:three_prime_UTR
CAGGCACCTGTTGGGTATGA+TGG 0.404888 4_2:-54507393 Msa0607580:CDS
AATTATGGGGATGTGGGTTA+TGG 0.406562 4_2:-54507312 Msa0607580:CDS
CAAAAGGGTATAGAATGGTT+AGG 0.407504 4_2:-54507524 Msa0607580:CDS
TTCCTCTTCATCTTTGTATG+TGG 0.409042 4_2:+54508211 None:intergenic
GGAAGCAGGTGGTTCGGCGG+AGG 0.415371 4_2:+54508142 None:intergenic
TTTACAAATGACTAGGTTAG+TGG 0.418051 4_2:-54503254 Msa0607580:three_prime_UTR
TTGAATGAGAGTAAATCAAA+TGG 0.425174 4_2:-54503590 Msa0607580:CDS
GGTTCTTCTTCATCTTCATC+AGG 0.425618 4_2:+54507945 None:intergenic
GTAGCTTTCAAAGACCTCTA+TGG 0.425881 4_2:-54503821 Msa0607580:CDS
TGCTGCTGCTGTGTCAATTC+CGG 0.425892 4_2:-54507841 Msa0607580:CDS
GGTGGAGGAAGCAGGTGGTT+CGG 0.429695 4_2:+54508136 None:intergenic
TGCTTCTGCTTCTTCGGAAG+CGG 0.430953 4_2:+54507924 None:intergenic
TTTGGGTATAGGGATATTGA+TGG 0.432413 4_2:-54507363 Msa0607580:CDS
GGTTCGACGGTGGAGGAAGC+AGG 0.436928 4_2:+54508128 None:intergenic
TTGACTGAGAAGAAATCTAA+TGG 0.437022 4_2:-54503617 Msa0607580:CDS
AGGGAGAATTATGGGGATGT+GGG 0.438704 4_2:-54507318 Msa0607580:CDS
GAAATTGGTTCTTCCTTGAC+AGG 0.440351 4_2:+54507885 None:intergenic
TTAAGTGCAGGGAGCACAAA+AGG 0.448508 4_2:-54507540 Msa0607580:CDS
GTAAGATTCATAAGGCTTTG+AGG 0.449334 4_2:-54507338 Msa0607580:CDS
AGTGAGGATAGGTTAAGTGC+AGG 0.449423 4_2:-54507552 Msa0607580:CDS
TGCACAGTTAAGTTCAACTT+TGG 0.451377 4_2:-54503746 Msa0607580:CDS
GAGGGAGAATTATGGGGATG+TGG 0.455127 4_2:-54507319 Msa0607580:CDS
TAAGATTCATAAGGCTTTGA+GGG 0.456790 4_2:-54507337 Msa0607580:CDS
AAAATATCCAAAAGGTGAAA+AGG 0.459114 4_2:+54503132 None:intergenic
GGAACTTCAACCATTGGCTT+GGG 0.460214 4_2:+54503677 None:intergenic
TAGGGCAACAAGAGGGGTAG+TGG 0.460385 4_2:-54507505 Msa0607580:CDS
GTAGTGAGGTTAGGGGAGAG+TGG 0.460406 4_2:-54507456 Msa0607580:CDS
AAGAAATCTTAAGTGTAAGA+TGG 0.461808 4_2:-54503365 Msa0607580:exon
AGGAACTTCAACCATTGGCT+TGG 0.462086 4_2:+54503676 None:intergenic
AAGTTGAGTTGAGTGAGGAT+AGG 0.463307 4_2:-54507563 Msa0607580:CDS
TTTCGGTGAATTCTTCTGTT+CGG 0.464189 4_2:+54507983 None:intergenic
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4_2:-54503482 Msa0607580:CDS
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4_2:-54503509 Msa0607580:CDS
ATGGTTGAAGTTCCTCATCA+TGG 0.472322 4_2:-54503668 Msa0607580:CDS
TTGTCAGGAAATCTCTGTAC+TGG 0.472773 4_2:+54507642 None:intergenic
GGCGCAAACTTATCTCCATC+AGG 0.473790 4_2:+54507255 None:intergenic
ACTCTTCCTTCTTCTCTCAT+CGG 0.476839 4_2:-54508307 Msa0607580:five_prime_UTR
TGATGGGAGTAAGATTCATA+AGG 0.484252 4_2:-54507346 Msa0607580:CDS
TCGACTGTGAGGAAATCAAC+AGG 0.485841 4_2:-54503563 Msa0607580:CDS
GATAAACATATCTTCATCTC+CGG 0.486302 4_2:+54507606 None:intergenic
GTGATTTGCAGGCACCTGTT+GGG 0.494154 4_2:-54507401 Msa0607580:CDS
GAAGCAGGTGGTTCGGCGGA+GGG 0.494154 4_2:+54508143 None:intergenic
TCGTCTGAGAGGAAATCAAA+TGG 0.494367 4_2:-54503536 Msa0607580:CDS
GTTGTTGTTGTGACGGTTGA+AGG 0.495815 4_2:+54508170 None:intergenic
GGAGTGGTGGTAGTAATTAG+AGG 0.503084 4_2:+54508062 None:intergenic
TCTTAATATTATTAAATCCA+GGG 0.503953 4_2:-54503208 Msa0607580:three_prime_UTR
AGTTAAGTTCAACTTTGGTC+CGG 0.504875 4_2:-54503741 Msa0607580:CDS
AGAAATCTTAAGTGTAAGAT+GGG 0.506651 4_2:-54503364 Msa0607580:exon
TGCTTATAATCCAGATGCTA+AGG 0.510784 4_2:-54507193 Msa0607580:CDS
CTTCTGTTCGGCAGAGTCGT+CGG 0.512067 4_2:+54507995 None:intergenic
TTGGGTATAGGGATATTGAT+GGG 0.515535 4_2:-54507362 Msa0607580:CDS
CTATTCCCATCATACCCAAC+AGG 0.519489 4_2:+54507387 None:intergenic
AAAAGGGTATAGAATGGTTA+GGG 0.519863 4_2:-54507523 Msa0607580:CDS
AGCGGGTGGTTCGACGGTGG+AGG 0.521228 4_2:+54508121 None:intergenic
GAAGAAATCAGATGAAGAGG+TGG 0.523261 4_2:-54503393 Msa0607580:CDS
TTCCTCATGATTTCAATGAA+CGG 0.525635 4_2:-54503706 Msa0607580:CDS
GTCGCTGTTCCATTCGTCGC+CGG 0.527555 4_2:+54507807 None:intergenic
ATCAACCACGGTGGAGACAG+CGG 0.529152 4_2:+54508103 None:intergenic
GGGGATGTGGGTTATGGTGA+AGG 0.530152 4_2:-54507306 Msa0607580:CDS
GCGATTCCGATGAGAGAAGA+AGG 0.530328 4_2:+54508301 None:intergenic
GGTGATTTGCAGGCACCTGT+TGG 0.530379 4_2:-54507402 Msa0607580:CDS
AGAGTATACATTGAAGCAGC+AGG 0.532295 4_2:+54503785 None:intergenic
AACAATAACAACCACACGAA+CGG 0.535403 4_2:-54507690 Msa0607580:CDS
TGATGAGGAACTTCAACCAT+TGG 0.535810 4_2:+54503671 None:intergenic
ACAATCACACCGGCGACGAA+TGG 0.537475 4_2:-54507816 Msa0607580:CDS
GGCTTTGAGGGAGAATTATG+GGG 0.538168 4_2:-54507325 Msa0607580:CDS
AGAGTCGTCGGAGGGTTCAT+CGG 0.539004 4_2:+54508007 None:intergenic
GGAGACAGCGGGTGGTTCGA+CGG 0.541479 4_2:+54508115 None:intergenic
GAGAGTGGACATACACGGTT+GGG 0.541839 4_2:-54507441 Msa0607580:CDS
GCAACAAGAGGGGTAGTGGA+AGG 0.547738 4_2:-54507501 Msa0607580:CDS
GGGTGCAGTTGTTGTTGTGA+CGG 0.549217 4_2:+54508163 None:intergenic
GAATGGTTAGGGCAACAAGA+GGG 0.550128 4_2:-54507512 Msa0607580:CDS
TTAGTGGTGTAAACTTATGA+AGG 0.551128 4_2:-54503238 Msa0607580:three_prime_UTR
GTCGCCGGTGTGATTGTAGC+CGG 0.553425 4_2:+54507822 None:intergenic
GAGGGGTAGTGGAAGGAGCT+TGG 0.553509 4_2:-54507494 Msa0607580:CDS
TGAAAATCAAGTTGAAAATG+GGG 0.558856 4_2:-54503642 Msa0607580:CDS
GATCCACCTAAAGTTGTGCC+TGG 0.560970 4_2:-54507168 Msa0607580:intron
GTTGGGTTGGACAATGGAGA+AGG 0.562846 4_2:-54507424 Msa0607580:CDS
GCAGCAGCATTGTTAACCTC+CGG 0.563639 4_2:+54507858 None:intergenic
GGCCGTTCATTGAAATCATG+AGG 0.564427 4_2:+54503704 None:intergenic
GGAGAAGAAATCAGATGAAG+AGG 0.564827 4_2:-54503396 Msa0607580:CDS
ACCACCACTCCCTCCAACGA+CGG 0.564951 4_2:-54508050 Msa0607580:CDS
AGCCACATACAAAGATGAAG+AGG 0.566540 4_2:-54508213 Msa0607580:CDS
TCAACCACGGTGGAGACAGC+GGG 0.567122 4_2:+54508104 None:intergenic
GGAGAAGAAATCAGATGAAG+AGG 0.571105 4_2:-54503423 Msa0607580:CDS
AAATTGATTTACAAATGACT+AGG 0.571172 4_2:-54503261 Msa0607580:three_prime_UTR
GAAATCAGATGAAGAGGCGA+AGG 0.572048 4_2:-54503417 Msa0607580:CDS
ACTCAAAACCCTAATTTCCA+TGG 0.572184 4_2:-54508246 Msa0607580:exon
TGTTCGGCAGAGTCGTCGGA+GGG 0.573277 4_2:+54507999 None:intergenic
TGTCTTCTCCACCGTTCGTG+TGG 0.575419 4_2:+54507679 None:intergenic
TTCCTCTCTGAACCCTGTCA+AGG 0.578436 4_2:-54507898 Msa0607580:CDS
GAGCACAAAAGGGTATAGAA+TGG 0.579497 4_2:-54507529 Msa0607580:CDS
TCCGTCGTTGGAGGGAGTGG+TGG 0.584744 4_2:+54508049 None:intergenic
CTGTTCGGCAGAGTCGTCGG+AGG 0.586497 4_2:+54507998 None:intergenic
TACACGGTTGGGTTGGACAA+TGG 0.587819 4_2:-54507430 Msa0607580:CDS
GGAGAAAGTTGAGTTGAGTG+AGG 0.590150 4_2:-54507568 Msa0607580:CDS
GAGATTCAATCTGAAAAGAG+AGG 0.592772 4_2:+54508278 None:intergenic
AAAATCACATGGAGAGTCGA+AGG 0.593858 4_2:-54503444 Msa0607580:CDS
GTGGACATACACGGTTGGGT+TGG 0.594702 4_2:-54507437 Msa0607580:CDS
AGGCACCTGTTGGGTATGAT+GGG 0.596911 4_2:-54507392 Msa0607580:CDS
TAAGTGCAGGGAGCACAAAA+GGG 0.599357 4_2:-54507539 Msa0607580:CDS
TCGTCGGAGGGTTCATCGGA+GGG 0.603476 4_2:+54508011 None:intergenic
TGTGGCTTGAAGTGTATCCA+TGG 0.604461 4_2:+54508229 None:intergenic
GACAGCGGGTGGTTCGACGG+TGG 0.608842 4_2:+54508118 None:intergenic
GTGAGGATAGGTTAAGTGCA+GGG 0.610539 4_2:-54507551 Msa0607580:CDS
GGAGAGTGGACATACACGGT+TGG 0.612898 4_2:-54507442 Msa0607580:CDS
TAACCAGGCACAACTTTAGG+TGG 0.615470 4_2:+54507165 None:intergenic
GTCGTCGGAGGGTTCATCGG+AGG 0.615642 4_2:+54508010 None:intergenic
TTGGGTTGGACAATGGAGAA+GGG 0.617220 4_2:-54507423 Msa0607580:CDS
AGATTCAATCTGAAAAGAGA+GGG 0.625169 4_2:+54508279 None:intergenic
AAATTGGTTCTTCCTTGACA+GGG 0.631947 4_2:+54507886 None:intergenic
GATAAAGGTAGTGAGGTTAG+GGG 0.636348 4_2:-54507463 Msa0607580:CDS
GGAGGAAGCAGGTGGTTCGG+CGG 0.637457 4_2:+54508139 None:intergenic
AATGGTTAGGGCAACAAGAG+GGG 0.638305 4_2:-54507511 Msa0607580:CDS
ACGGCCAATTCCCAAGCCAA+TGG 0.642692 4_2:-54503687 Msa0607580:CDS
AGAACCAATTTCGTTGCCGG+AGG 0.644292 4_2:-54507874 Msa0607580:CDS
TTTATCGAAAGTTTACAAAG+CGG 0.645394 4_2:-54507589 Msa0607580:CDS
TGACAAAAGTGACGATACAC+CGG 0.648124 4_2:-54507625 Msa0607580:CDS
AATAACAACCACACGAACGG+TGG 0.652994 4_2:-54507687 Msa0607580:CDS
TCGACGGTGGAGGAAGCAGG+TGG 0.654043 4_2:+54508131 None:intergenic
CAACAGGAGAGTCGTCTGAG+AGG 0.655861 4_2:-54503547 Msa0607580:CDS
TGGTTTGGTATAAAGGACAA+CGG 0.659021 4_2:-54507218 Msa0607580:CDS
ACCACGGTGGAGACAGCGGG+TGG 0.665511 4_2:+54508107 None:intergenic
TAGGGGAGAGTGGACATACA+CGG 0.669083 4_2:-54507446 Msa0607580:CDS
GATAGTAACGACCTCCATAG+AGG 0.671261 4_2:+54503807 None:intergenic
GCTTTCAAAGACCTCTATGG+AGG 0.673393 4_2:-54503818 Msa0607580:CDS
AGAATGGTTAGGGCAACAAG+AGG 0.674035 4_2:-54507513 Msa0607580:CDS
CAAATGGAGAGTCGACTGTG+AGG 0.690995 4_2:-54503574 Msa0607580:CDS
TTCCTTGACAGGGTTCAGAG+AGG 0.691426 4_2:+54507896 None:intergenic
TGTTAATTCCATATCAACCA+CGG 0.707113 4_2:+54508091 None:intergenic
ACCACCCGCTGTCTCCACCG+TGG 0.719787 4_2:-54508108 Msa0607580:CDS
TAATTCCATATCAACCACGG+TGG 0.756610 4_2:+54508094 None:intergenic
AATTCCGGCTACAATCACAC+CGG 0.762987 4_2:-54507826 Msa0607580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAATTCATAATATATA+GGG - chr4_2:54506320-54506339 Msa0607580:intron 10.0%
!! TCATAAATTCATAATATATA+GGG - chr4_2:54506320-54506339 Msa0607580:intron 10.0%
!!! TATACCTTTTTATATATTCT+CGG + chr4_2:54504857-54504876 None:intergenic 15.0%
!! AAATGTATTATCATTTGAAA+AGG + chr4_2:54505764-54505783 None:intergenic 15.0%
!! ATTATGAATTTATGACTAAT+GGG + chr4_2:54506315-54506334 None:intergenic 15.0%
!! TATTATGAATTTATGACTAA+TGG + chr4_2:54506316-54506335 None:intergenic 15.0%
!! GTCATAAATTCATAATATAT+AGG - chr4_2:54506319-54506338 Msa0607580:intron 15.0%
!! AAATGTATTATCATTTGAAA+AGG + chr4_2:54505764-54505783 None:intergenic 15.0%
!! ATTATGAATTTATGACTAAT+GGG + chr4_2:54506315-54506334 None:intergenic 15.0%
!! TATTATGAATTTATGACTAA+TGG + chr4_2:54506316-54506335 None:intergenic 15.0%
!! GTCATAAATTCATAATATAT+AGG - chr4_2:54506319-54506338 Msa0607580:intron 15.0%
!! TTCTTAATATTATTAAATCC+AGG - chr4_2:54508223-54508242 Msa0607580:CDS 15.0%
!! TCTTAATATTATTAAATCCA+GGG - chr4_2:54508224-54508243 Msa0607580:CDS 15.0%
!!! AAAATTCTTATAATTTTCAG+AGG - chr4_2:54508247-54508266 Msa0607580:exon 15.0%
!! AGAAAAAGAATAACAATGTA+TGG - chr4_2:54503662-54503681 Msa0607580:CDS 20.0%
!! GAAAAAGAATAACAATGTAT+GGG - chr4_2:54503663-54503682 Msa0607580:CDS 20.0%
!! AAAAACAAAAACAACAACAA+CGG - chr4_2:54503712-54503731 Msa0607580:CDS 20.0%
!!! TTTTATATTAATTTGCCTGA+TGG - chr4_2:54504162-54504181 Msa0607580:intron 20.0%
!!! AATTTTGAGCATTATTGATA+GGG - chr4_2:54504339-54504358 Msa0607580:intron 20.0%
!!! TTTGTTTGATAATAATCACA+AGG + chr4_2:54504385-54504404 None:intergenic 20.0%
!! AAATCGATAGTTCATTATTT+AGG - chr4_2:54504471-54504490 Msa0607580:intron 20.0%
!! AATCGATAGTTCATTATTTA+GGG - chr4_2:54504472-54504491 Msa0607580:intron 20.0%
!! TAAAATTTAGACACACTTAA+GGG + chr4_2:54504567-54504586 None:intergenic 20.0%
!! ATAAAATTTAGACACACTTA+AGG + chr4_2:54504568-54504587 None:intergenic 20.0%
!! AAAAAACATGAAAAAGTAAC+TGG + chr4_2:54504720-54504739 None:intergenic 20.0%
!! TTGTACATATATTAAACATG+AGG + chr4_2:54504791-54504810 None:intergenic 20.0%
!! TTTCATCAACAGATATAATA+TGG + chr4_2:54504891-54504910 None:intergenic 20.0%
!! ACATAAAATTTCAGAAAAAC+AGG + chr4_2:54505334-54505353 None:intergenic 20.0%
!! TCTTGTTGATGTTTATTTAT+GGG + chr4_2:54505524-54505543 None:intergenic 20.0%
!! AATAGTGAATATTCAGATTA+AGG + chr4_2:54506111-54506130 None:intergenic 20.0%
!! TTAATCTGAATATTCACTAT+TGG - chr4_2:54506110-54506129 Msa0607580:intron 20.0%
!! ATATACAGATATTCAGATTA+AGG + chr4_2:54506208-54506227 None:intergenic 20.0%
!! AATATCTGTATATTCACTAT+TGG - chr4_2:54506215-54506234 Msa0607580:intron 20.0%
!! AATAGTGAATATTCAGATTA+AGG + chr4_2:54506111-54506130 None:intergenic 20.0%
!! TTAATCTGAATATTCACTAT+TGG - chr4_2:54506110-54506129 Msa0607580:intron 20.0%
!! ATATACAGATATTCAGATTA+AGG + chr4_2:54506208-54506227 None:intergenic 20.0%
!! AATATCTGTATATTCACTAT+TGG - chr4_2:54506215-54506234 Msa0607580:intron 20.0%
!!! TTTGAAAATCAAGTTGAAAA+TGG - chr4_2:54507788-54507807 Msa0607580:CDS 20.0%
!!! TTGAAAATCAAGTTGAAAAT+GGG - chr4_2:54507789-54507808 Msa0607580:CDS 20.0%
!!! AAATTGATTTACAAATGACT+AGG - chr4_2:54508171-54508190 Msa0607580:CDS 20.0%
!!! AAAATTATAAGAATTTTCCC+TGG + chr4_2:54508244-54508263 None:intergenic 20.0%
! TTTATCGAAAGTTTACAAAG+CGG - chr4_2:54503843-54503862 Msa0607580:CDS 25.0%
!! CAAACCAAATTCTGATTTTT+CGG + chr4_2:54504201-54504220 None:intergenic 25.0%
!!! CTGTTTTATGTTTTTGATGT+TGG - chr4_2:54504316-54504335 Msa0607580:intron 25.0%
!! GAATTTTGAGCATTATTGAT+AGG - chr4_2:54504338-54504357 Msa0607580:intron 25.0%
!! TTTGCTAGTTTATTATCTCA+TGG - chr4_2:54504446-54504465 Msa0607580:intron 25.0%
! ATCGATAGTTCATTATTTAG+GGG - chr4_2:54504473-54504492 Msa0607580:intron 25.0%
! TTCACCGAGAATATATAAAA+AGG - chr4_2:54504850-54504869 Msa0607580:intron 25.0%
!!! AAATAACCGTTTTTTGTGAA+AGG - chr4_2:54504910-54504929 Msa0607580:intron 25.0%
!!! TGGTAAGGTTTATTTTTTGT+GGG + chr4_2:54505007-54505026 None:intergenic 25.0%
!!! TAACGTCTTTTATTTGTGTT+CGG + chr4_2:54505454-54505473 None:intergenic 25.0%
!! GTCTTGTTGATGTTTATTTA+TGG + chr4_2:54505525-54505544 None:intergenic 25.0%
!!! GTTTTGAATAGAAAACCTTT+TGG + chr4_2:54505634-54505653 None:intergenic 25.0%
! AAAACATATTTAGCAAGACT+GGG - chr4_2:54505649-54505668 Msa0607580:intron 25.0%
! TGCTCTTAAAGTATATTGAT+TGG - chr4_2:54505819-54505838 Msa0607580:intron 25.0%
! ATGTCTCAATTATCGAAAAA+TGG + chr4_2:54505861-54505880 None:intergenic 25.0%
! TACATTTCTATCATAGTCTT+AGG - chr4_2:54506001-54506020 Msa0607580:intron 25.0%
!! ACATTTCTATCATAGTCTTA+GGG - chr4_2:54506002-54506021 Msa0607580:intron 25.0%
! AATATTCACTATTGGAAGTT+AGG - chr4_2:54506118-54506137 Msa0607580:intron 25.0%
! TATATTCACTATTGGAAGTT+AGG - chr4_2:54506223-54506242 Msa0607580:intron 25.0%
!!! TTGCTTAACTTGTTTTAGAA+AGG - chr4_2:54506461-54506480 Msa0607580:intron 25.0%
! AAACAACATTTCAATTGTAG+AGG + chr4_2:54506550-54506569 None:intergenic 25.0%
! TGCTCTTAAAGTATATTGAT+TGG - chr4_2:54505819-54505838 Msa0607580:intron 25.0%
! ATGTCTCAATTATCGAAAAA+TGG + chr4_2:54505861-54505880 None:intergenic 25.0%
! TTGATCTAGATTTGATTCTA+TGG - chr4_2:54506843-54506862 Msa0607580:intron 25.0%
! TGATCTAGATTTGATTCTAT+GGG - chr4_2:54506844-54506863 Msa0607580:intron 25.0%
! TACATTTCTATCATAGTCTT+AGG - chr4_2:54506001-54506020 Msa0607580:intron 25.0%
!! ACATTTCTATCATAGTCTTA+GGG - chr4_2:54506002-54506021 Msa0607580:intron 25.0%
! AATATTCACTATTGGAAGTT+AGG - chr4_2:54506118-54506137 Msa0607580:intron 25.0%
! TATATTCACTATTGGAAGTT+AGG - chr4_2:54506223-54506242 Msa0607580:intron 25.0%
!!! TTGCTTAACTTGTTTTAGAA+AGG - chr4_2:54506461-54506480 Msa0607580:intron 25.0%
! AAACAACATTTCAATTGTAG+AGG + chr4_2:54506550-54506569 None:intergenic 25.0%
!!! TGTAAGTTGTATTTTGAGTA+TGG - chr4_2:54507504-54507523 Msa0607580:CDS 25.0%
! GAGATATCTTTCTTCAAAAA+TGG - chr4_2:54507575-54507594 Msa0607580:CDS 25.0%
!!! TGAAAATCAAGTTGAAAATG+GGG - chr4_2:54507790-54507809 Msa0607580:CDS 25.0%
! TTGAATGAGAGTAAATCAAA+TGG - chr4_2:54507842-54507861 Msa0607580:CDS 25.0%
! AAGAAATCTTAAGTGTAAGA+TGG - chr4_2:54508067-54508086 Msa0607580:CDS 25.0%
! AGAAATCTTAAGTGTAAGAT+GGG - chr4_2:54508068-54508087 Msa0607580:CDS 25.0%
!!! CAGATATTTTGTAGTTTGTT+TGG - chr4_2:54508276-54508295 Msa0607580:five_prime_UTR 25.0%
! AAAATATCCAAAAGGTGAAA+AGG + chr4_2:54508303-54508322 None:intergenic 25.0%
! ATATGGCAAAAATATCCAAA+AGG + chr4_2:54508311-54508330 None:intergenic 25.0%
AGATTCAATCTGAAAAGAGA+GGG + chr4_2:54503156-54503175 None:intergenic 30.0%
AAGTGTATCCATGGAAATTA+GGG + chr4_2:54503197-54503216 None:intergenic 30.0%
TGTTAATTCCATATCAACCA+CGG + chr4_2:54503344-54503363 None:intergenic 30.0%
GATAAACATATCTTCATCTC+CGG + chr4_2:54503829-54503848 None:intergenic 30.0%
! AAAAGGGTATAGAATGGTTA+GGG - chr4_2:54503909-54503928 Msa0607580:intron 30.0%
!!! AGCTTGGTATTTTGAGATAA+AGG - chr4_2:54503954-54503973 Msa0607580:intron 30.0%
!!! ATTTTGAGATAAAGGTAGTG+AGG - chr4_2:54503962-54503981 Msa0607580:intron 30.0%
! TAAGATTCATAAGGCTTTGA+GGG - chr4_2:54504095-54504114 Msa0607580:intron 30.0%
CGAAAAATCAGAATTTGGTT+TGG - chr4_2:54504199-54504218 Msa0607580:intron 30.0%
!! CAGAATTTGGTTTGGTATAA+AGG - chr4_2:54504207-54504226 Msa0607580:intron 30.0%
ATAGTTCATTATTTAGGGGT+GGG - chr4_2:54504477-54504496 Msa0607580:intron 30.0%
! CTATGTATTATGGACTACAT+AGG + chr4_2:54504603-54504622 None:intergenic 30.0%
CTATGTAGTCCATAATACAT+AGG - chr4_2:54504601-54504620 Msa0607580:intron 30.0%
TTTCCAACTCCTATGTATTA+TGG + chr4_2:54504613-54504632 None:intergenic 30.0%
ACTTGTACTATGAAACATTC+TGG - chr4_2:54504676-54504695 Msa0607580:intron 30.0%
ATTAAACATGAGGTGTATCT+GGG + chr4_2:54504781-54504800 None:intergenic 30.0%
TATTAAACATGAGGTGTATC+TGG + chr4_2:54504782-54504801 None:intergenic 30.0%
TATATATTCTCGGTGAAGAA+CGG + chr4_2:54504847-54504866 None:intergenic 30.0%
!!! GTAAGGTTTATTTTTTGTGG+GGG + chr4_2:54505005-54505024 None:intergenic 30.0%
!!! GGTAAGGTTTATTTTTTGTG+GGG + chr4_2:54505006-54505025 None:intergenic 30.0%
!!! GTGGTAAGGTTTATTTTTTG+TGG + chr4_2:54505008-54505027 None:intergenic 30.0%
CCTAGATGCATTAATATGAT+AGG + chr4_2:54505300-54505319 None:intergenic 30.0%
CCTATCATATTAATGCATCT+AGG - chr4_2:54505297-54505316 Msa0607580:intron 30.0%
AATTTCAGAAAAACAGGAGA+TGG + chr4_2:54505328-54505347 None:intergenic 30.0%
CAAAACATATTTAGCAAGAC+TGG - chr4_2:54505648-54505667 Msa0607580:intron 30.0%
ATTATGAAAACACCGTATGT+TGG - chr4_2:54505676-54505695 Msa0607580:intron 30.0%
TTATGAAAACACCGTATGTT+GGG - chr4_2:54505677-54505696 Msa0607580:intron 30.0%
!! TATATTGATTGGCTTAGTCA+TGG - chr4_2:54505830-54505849 Msa0607580:intron 30.0%
!! ATATTGATTGGCTTAGTCAT+GGG - chr4_2:54505831-54505850 Msa0607580:intron 30.0%
ACCACTAATACAATATGCAA+AGG - chr4_2:54505932-54505951 Msa0607580:intron 30.0%
ACCTTTGCATATTGTATTAG+TGG + chr4_2:54505936-54505955 None:intergenic 30.0%
AAGGTGATTGTAATTTGATC+TGG - chr4_2:54505951-54505970 Msa0607580:intron 30.0%
TTGATCTGGATTTGATTCTA+TGG - chr4_2:54505965-54505984 Msa0607580:intron 30.0%
TGATCTGGATTTGATTCTAT+GGG - chr4_2:54505966-54505985 Msa0607580:intron 30.0%
TTCAGATTAAGGAACTCAAT+GGG + chr4_2:54506100-54506119 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG + chr4_2:54506101-54506120 None:intergenic 30.0%
TTCAGATTAAGGAACTCAAT+GGG + chr4_2:54506100-54506119 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG + chr4_2:54506101-54506120 None:intergenic 30.0%
GTTAGGTACACAACTTAATT+GGG - chr4_2:54506346-54506365 Msa0607580:intron 30.0%
CAAGGAATATAGTTGTTCAA+TGG + chr4_2:54506577-54506596 None:intergenic 30.0%
TGAAGAAATTTCTGTAAGCA+AGG + chr4_2:54506595-54506614 None:intergenic 30.0%
!! TATATTGATTGGCTTAGTCA+TGG - chr4_2:54505830-54505849 Msa0607580:intron 30.0%
!! ATATTGATTGGCTTAGTCAT+GGG - chr4_2:54505831-54505850 Msa0607580:intron 30.0%
ACCACTAATACAATATGCAA+AGG - chr4_2:54505932-54505951 Msa0607580:intron 30.0%
ACCTTTGCATATTGTATTAG+TGG + chr4_2:54505936-54505955 None:intergenic 30.0%
TTCAGATTAAGGAACTCAAT+GGG + chr4_2:54506100-54506119 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG + chr4_2:54506101-54506120 None:intergenic 30.0%
TTCAGATTAAGGAACTCAAT+GGG + chr4_2:54506100-54506119 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG + chr4_2:54506101-54506120 None:intergenic 30.0%
GTTAGGTACACAACTTAATT+GGG - chr4_2:54506346-54506365 Msa0607580:intron 30.0%
CAAGGAATATAGTTGTTCAA+TGG + chr4_2:54506577-54506596 None:intergenic 30.0%
CAAAATACAACTTACAGCAA+AGG + chr4_2:54507500-54507519 None:intergenic 30.0%
!! GTTGTATTTTGAGTATGGAA+TGG - chr4_2:54507509-54507528 Msa0607580:CDS 30.0%
GTATGGAATGGAAATTCAAT+TGG - chr4_2:54507521-54507540 Msa0607580:CDS 30.0%
TTCAAAAATGGTGTATGTCA+AGG - chr4_2:54507587-54507606 Msa0607580:CDS 30.0%
TTCCTCATGATTTCAATGAA+CGG - chr4_2:54507726-54507745 Msa0607580:CDS 30.0%
! TGATTTTCAAAACCATGATG+AGG + chr4_2:54507779-54507798 None:intergenic 30.0%
TTGACTGAGAAGAAATCTAA+TGG - chr4_2:54507815-54507834 Msa0607580:CDS 30.0%
TCATATGAGCAAAAATCACA+TGG - chr4_2:54507977-54507996 Msa0607580:CDS 30.0%
TTTACAAATGACTAGGTTAG+TGG - chr4_2:54508178-54508197 Msa0607580:CDS 30.0%
TTAGTGGTGTAAACTTATGA+AGG - chr4_2:54508194-54508213 Msa0607580:CDS 30.0%
GAGATTCAATCTGAAAAGAG+AGG + chr4_2:54503157-54503176 None:intergenic 35.0%
!!! ATTAGGGTTTTGAGTGCAAT+CGG + chr4_2:54503181-54503200 None:intergenic 35.0%
ACTCAAAACCCTAATTTCCA+TGG - chr4_2:54503186-54503205 Msa0607580:three_prime_UTR 35.0%
GAAGTGTATCCATGGAAATT+AGG + chr4_2:54503198-54503217 None:intergenic 35.0%
TTCCTCTTCATCTTTGTATG+TGG + chr4_2:54503224-54503243 None:intergenic 35.0%
TGAAGAGGAAGATGAAGAAA+TGG - chr4_2:54503234-54503253 Msa0607580:three_prime_UTR 35.0%
TTTCGGTGAATTCTTCTGTT+CGG + chr4_2:54503452-54503471 None:intergenic 35.0%
! GGTTGTTCTCTTTTCTGTTT+CGG + chr4_2:54503469-54503488 None:intergenic 35.0%
! AAATTGGTTCTTCCTTGACA+GGG + chr4_2:54503549-54503568 None:intergenic 35.0%
AACAATAACAACCACACGAA+CGG - chr4_2:54503742-54503761 Msa0607580:CDS 35.0%
! CAAAAGGGTATAGAATGGTT+AGG - chr4_2:54503908-54503927 Msa0607580:intron 35.0%
AGATAAAGGTAGTGAGGTTA+GGG - chr4_2:54503968-54503987 Msa0607580:intron 35.0%
!! GGTATGATGGGAATAGTTTT+GGG - chr4_2:54504052-54504071 Msa0607580:intron 35.0%
!!! ATGGGAATAGTTTTGGGTAT+AGG - chr4_2:54504058-54504077 Msa0607580:intron 35.0%
!!! TGGGAATAGTTTTGGGTATA+GGG - chr4_2:54504059-54504078 Msa0607580:intron 35.0%
TTTGGGTATAGGGATATTGA+TGG - chr4_2:54504069-54504088 Msa0607580:intron 35.0%
TTGGGTATAGGGATATTGAT+GGG - chr4_2:54504070-54504089 Msa0607580:intron 35.0%
TGATGGGAGTAAGATTCATA+AGG - chr4_2:54504086-54504105 Msa0607580:intron 35.0%
GTAAGATTCATAAGGCTTTG+AGG - chr4_2:54504094-54504113 Msa0607580:intron 35.0%
TATGGTGAAGGAGATGTTAT+TGG - chr4_2:54504138-54504157 Msa0607580:intron 35.0%
ATGGTGAAGGAGATGTTATT+GGG - chr4_2:54504139-54504158 Msa0607580:intron 35.0%
!! TGGTTTGGTATAAAGGACAA+CGG - chr4_2:54504214-54504233 Msa0607580:intron 35.0%
TGCTTATAATCCAGATGCTA+AGG - chr4_2:54504239-54504258 Msa0607580:intron 35.0%
GATAGTTCATTATTTAGGGG+TGG - chr4_2:54504476-54504495 Msa0607580:intron 35.0%
TAGTTCATTATTTAGGGGTG+GGG - chr4_2:54504478-54504497 Msa0607580:intron 35.0%
AGTCCATAATACATAGGAGT+TGG - chr4_2:54504607-54504626 Msa0607580:intron 35.0%
CATAGGAGTTGGAAATGTAT+TGG - chr4_2:54504618-54504637 Msa0607580:intron 35.0%
ATATATTCTCGGTGAAGAAC+GGG + chr4_2:54504846-54504865 None:intergenic 35.0%
ATCGGTCCTTTCACAAAAAA+CGG + chr4_2:54504919-54504938 None:intergenic 35.0%
TGCTATAGACATTGTTCCAT+CGG + chr4_2:54504937-54504956 None:intergenic 35.0%
AACAATGTCTATAGCAGTGT+AGG - chr4_2:54504941-54504960 Msa0607580:intron 35.0%
!! GTCTATTTTGCTATGCAATG+TGG + chr4_2:54505042-54505061 None:intergenic 35.0%
! GATACAATAGAGGCATGAAA+TGG + chr4_2:54505358-54505377 None:intergenic 35.0%
ACAGAGACATGATACAATAG+AGG + chr4_2:54505368-54505387 None:intergenic 35.0%
! AGTATGGATTTTTCGTCTGA+TGG + chr4_2:54505420-54505439 None:intergenic 35.0%
AGACGAAAAATCCATACTGT+TGG - chr4_2:54505422-54505441 Msa0607580:intron 35.0%
GACGAAAAATCCATACTGTT+GGG - chr4_2:54505423-54505442 Msa0607580:intron 35.0%
TATGAAAACACCGTATGTTG+GGG - chr4_2:54505678-54505697 Msa0607580:intron 35.0%
TAGCAATTTGAATCCACTAG+CGG - chr4_2:54506029-54506048 Msa0607580:intron 35.0%
ATTCACTATTGGAAGTTAGG+TGG - chr4_2:54506121-54506140 Msa0607580:intron 35.0%
ATTCACTATTGGAAGTTAGG+TGG - chr4_2:54506121-54506140 Msa0607580:intron 35.0%
CATAATATATAGGGTGCGTT+AGG - chr4_2:54506329-54506348 Msa0607580:intron 35.0%
CGTTAGGTACACAACTTAAT+TGG - chr4_2:54506345-54506364 Msa0607580:intron 35.0%
TAGCAATTTGAATCCACTAG+CGG - chr4_2:54506029-54506048 Msa0607580:intron 35.0%
ATTCACTATTGGAAGTTAGG+TGG - chr4_2:54506121-54506140 Msa0607580:intron 35.0%
ATTCACTATTGGAAGTTAGG+TGG - chr4_2:54506121-54506140 Msa0607580:intron 35.0%
CATAATATATAGGGTGCGTT+AGG - chr4_2:54506329-54506348 Msa0607580:intron 35.0%
CGTTAGGTACACAACTTAAT+TGG - chr4_2:54506345-54506364 Msa0607580:intron 35.0%
TAACAGTTGTTCTGTAAGCA+AGG + chr4_2:54507472-54507491 None:intergenic 35.0%
CTGCACAGAAAAGAGAATAT+TGG + chr4_2:54507550-54507569 None:intergenic 35.0%
! CAATATTCTCTTTTCTGTGC+AGG - chr4_2:54507548-54507567 Msa0607580:CDS 35.0%
!!! AACTGTGCAGTTTTGTTCAT+GGG + chr4_2:54507675-54507694 None:intergenic 35.0%
!!! TAACTGTGCAGTTTTGTTCA+TGG + chr4_2:54507676-54507695 None:intergenic 35.0%
TGCACAGTTAAGTTCAACTT+TGG - chr4_2:54507686-54507705 Msa0607580:CDS 35.0%
AGTTAAGTTCAACTTTGGTC+CGG - chr4_2:54507691-54507710 Msa0607580:CDS 35.0%
TGAGGAAAAAATTCGAAGTC+CGG + chr4_2:54507713-54507732 None:intergenic 35.0%
TCGACTGAGAAGAAATCAAA+TGG - chr4_2:54507923-54507942 Msa0607580:CDS 35.0%
TCGACTGAGAAGAAATCAAA+TGG - chr4_2:54507923-54507942 Msa0607580:CDS 35.0%
TCTGTGCAGCAAAAAATACT+TGG + chr4_2:54508107-54508126 None:intergenic 35.0%
!!! AGTATTTTTTGCTGCACAGA+TGG - chr4_2:54508107-54508126 Msa0607580:CDS 35.0%
ACTCTTCCTTCTTCTCTCAT+CGG - chr4_2:54503125-54503144 Msa0607580:three_prime_UTR 40.0%
AGCCACATACAAAGATGAAG+AGG - chr4_2:54503219-54503238 Msa0607580:three_prime_UTR 40.0%
TAATTCCATATCAACCACGG+TGG + chr4_2:54503341-54503360 None:intergenic 40.0%
GGTTCTTCTTCATCTTCATC+AGG + chr4_2:54503490-54503509 None:intergenic 40.0%
GAAAGTTGCTTCTGCTTCTT+CGG + chr4_2:54503517-54503536 None:intergenic 40.0%
! GAAATTGGTTCTTCCTTGAC+AGG + chr4_2:54503550-54503569 None:intergenic 40.0%
! GTTCGTGTGGTTGTTATTGT+TGG + chr4_2:54503743-54503762 None:intergenic 40.0%
TTGTCAGGAAATCTCTGTAC+TGG + chr4_2:54503793-54503812 None:intergenic 40.0%
TGACAAAAGTGACGATACAC+CGG - chr4_2:54503807-54503826 Msa0607580:CDS 40.0%
!! AAGTTGAGTTGAGTGAGGAT+AGG - chr4_2:54503869-54503888 Msa0607580:intron 40.0%
! GAGCACAAAAGGGTATAGAA+TGG - chr4_2:54503903-54503922 Msa0607580:intron 40.0%
GAGATAAAGGTAGTGAGGTT+AGG - chr4_2:54503967-54503986 Msa0607580:intron 40.0%
GATAAAGGTAGTGAGGTTAG+GGG - chr4_2:54503969-54503988 Msa0607580:intron 40.0%
!! GGGTATGATGGGAATAGTTT+TGG - chr4_2:54504051-54504070 Msa0607580:intron 40.0%
!! AAGGCTTTGAGGGAGAATTA+TGG - chr4_2:54504105-54504124 Msa0607580:intron 40.0%
!! AGGCTTTGAGGGAGAATTAT+GGG - chr4_2:54504106-54504125 Msa0607580:intron 40.0%
! AATTATGGGGATGTGGGTTA+TGG - chr4_2:54504120-54504139 Msa0607580:intron 40.0%
TGCGCCGAAAAATCAGAATT+TGG - chr4_2:54504194-54504213 Msa0607580:intron 40.0%
AGCAGATTTGAAGACTAACC+AGG + chr4_2:54504285-54504304 None:intergenic 40.0%
CATAACCAAGTTCGCAATCA+AGG + chr4_2:54504540-54504559 None:intergenic 40.0%
CTTGATTGCGAACTTGGTTA+TGG - chr4_2:54504538-54504557 Msa0607580:intron 40.0%
AACGGGACAAACTGGATTTA+AGG + chr4_2:54504829-54504848 None:intergenic 40.0%
!!! GTTTTTTGTGAAAGGACCGA+TGG - chr4_2:54504918-54504937 Msa0607580:intron 40.0%
!!! TTTATTTTTTGTGGGGGTGG+GGG + chr4_2:54504999-54505018 None:intergenic 40.0%
!!! GTTTATTTTTTGTGGGGGTG+GGG + chr4_2:54505000-54505019 None:intergenic 40.0%
!!! GGTTTATTTTTTGTGGGGGT+GGG + chr4_2:54505001-54505020 None:intergenic 40.0%
!!! AGGTTTATTTTTTGTGGGGG+TGG + chr4_2:54505002-54505021 None:intergenic 40.0%
ATGCAATGTGGTTCAGGAAT+GGG + chr4_2:54505030-54505049 None:intergenic 40.0%
TATGCAATGTGGTTCAGGAA+TGG + chr4_2:54505031-54505050 None:intergenic 40.0%
! TTTGCTATGCAATGTGGTTC+AGG + chr4_2:54505036-54505055 None:intergenic 40.0%
ACAGAGCATGAAAGGAACTT+AGG + chr4_2:54505175-54505194 None:intergenic 40.0%
ACAAGAGAACAGAGCATGAA+AGG + chr4_2:54505183-54505202 None:intergenic 40.0%
CAGCAACTCAGATCAAAAAC+AGG + chr4_2:54505219-54505238 None:intergenic 40.0%
AAAATCCATACTGTTGGGAC+CGG - chr4_2:54505428-54505447 Msa0607580:intron 40.0%
!! GTCTTTTATTTGTGTTCGGC+CGG + chr4_2:54505450-54505469 None:intergenic 40.0%
TGCAAGTTTCTCGGATGTAA+GGG + chr4_2:54505588-54505607 None:intergenic 40.0%
TTGCAAGTTTCTCGGATGTA+AGG + chr4_2:54505589-54505608 None:intergenic 40.0%
CATCTCTGTTGCAAGTTTCT+CGG + chr4_2:54505597-54505616 None:intergenic 40.0%
! GAGATAGAAGTGTGACCAAA+AGG - chr4_2:54505616-54505635 Msa0607580:intron 40.0%
CATATTTAGCAAGACTGGGT+AGG - chr4_2:54505653-54505672 Msa0607580:intron 40.0%
ATGAAAACACCGTATGTTGG+GGG - chr4_2:54505679-54505698 Msa0607580:intron 40.0%
AGCAATTTGAATCCACTAGC+GGG - chr4_2:54506030-54506049 Msa0607580:intron 40.0%
AGCAATTTGAATCCACTAGC+GGG - chr4_2:54506030-54506049 Msa0607580:intron 40.0%
GTAGCTTTCAAAGACCTCTA+TGG - chr4_2:54507611-54507630 Msa0607580:CDS 40.0%
AGAGTATACATTGAAGCAGC+AGG + chr4_2:54507650-54507669 None:intergenic 40.0%
!!! ACTGTGCAGTTTTGTTCATG+GGG + chr4_2:54507674-54507693 None:intergenic 40.0%
TGATGAGGAACTTCAACCAT+TGG + chr4_2:54507764-54507783 None:intergenic 40.0%
ATGGTTGAAGTTCCTCATCA+TGG - chr4_2:54507764-54507783 Msa0607580:CDS 40.0%
TCGTCTGAGAGGAAATCAAA+TGG - chr4_2:54507896-54507915 Msa0607580:CDS 40.0%
AAAATCACATGGAGAGTCGA+AGG - chr4_2:54507988-54508007 Msa0607580:CDS 40.0%
GGAGAAGAAATCAGATGAAG+AGG - chr4_2:54508009-54508028 Msa0607580:CDS 40.0%
GGAGAAGAAATCAGATGAAG+AGG - chr4_2:54508009-54508028 Msa0607580:CDS 40.0%
GAAGAAATCAGATGAAGAGG+TGG - chr4_2:54508012-54508031 Msa0607580:CDS 40.0%
!!! TTTTTTGCTGCACAGATGGA+TGG - chr4_2:54508111-54508130 Msa0607580:CDS 40.0%
! TTTTTGCTGCACAGATGGAT+GGG - chr4_2:54508112-54508131 Msa0607580:CDS 40.0%
! GTTTGGTCCTTTTCACCTTT+TGG - chr4_2:54508293-54508312 Msa0607580:five_prime_UTR 40.0%
TGTGGCTTGAAGTGTATCCA+TGG + chr4_2:54503206-54503225 None:intergenic 45.0%
! GTTGTTGTTGTGACGGTTGA+AGG + chr4_2:54503265-54503284 None:intergenic 45.0%
GGAGTGGTGGTAGTAATTAG+AGG + chr4_2:54503373-54503392 None:intergenic 45.0%
GGAAGAACCAATTTCGTTGC+CGG - chr4_2:54503555-54503574 Msa0607580:CDS 45.0%
TTAACCTCCGGCAACGAAAT+TGG + chr4_2:54503565-54503584 None:intergenic 45.0%
AATTCCGGCTACAATCACAC+CGG - chr4_2:54503606-54503625 Msa0607580:CDS 45.0%
AATAACAACCACACGAACGG+TGG - chr4_2:54503745-54503764 Msa0607580:CDS 45.0%
!!! GGTGTATCGTCACTTTTGTC+AGG + chr4_2:54503808-54503827 None:intergenic 45.0%
!! GGAGAAAGTTGAGTTGAGTG+AGG - chr4_2:54503864-54503883 Msa0607580:CDS 45.0%
AGTGAGGATAGGTTAAGTGC+AGG - chr4_2:54503880-54503899 Msa0607580:intron 45.0%
GTGAGGATAGGTTAAGTGCA+GGG - chr4_2:54503881-54503900 Msa0607580:intron 45.0%
! TTAAGTGCAGGGAGCACAAA+AGG - chr4_2:54503892-54503911 Msa0607580:intron 45.0%
! TAAGTGCAGGGAGCACAAAA+GGG - chr4_2:54503893-54503912 Msa0607580:intron 45.0%
AGAATGGTTAGGGCAACAAG+AGG - chr4_2:54503919-54503938 Msa0607580:intron 45.0%
GAATGGTTAGGGCAACAAGA+GGG - chr4_2:54503920-54503939 Msa0607580:intron 45.0%
AATGGTTAGGGCAACAAGAG+GGG - chr4_2:54503921-54503940 Msa0607580:intron 45.0%
!! TTGGGTTGGACAATGGAGAA+GGG - chr4_2:54504009-54504028 Msa0607580:intron 45.0%
! AATGGAGAAGGGTGATTTGC+AGG - chr4_2:54504020-54504039 Msa0607580:intron 45.0%
CTATTCCCATCATACCCAAC+AGG + chr4_2:54504048-54504067 None:intergenic 45.0%
!! GGCTTTGAGGGAGAATTATG+GGG - chr4_2:54504107-54504126 Msa0607580:intron 45.0%
AGGGAGAATTATGGGGATGT+GGG - chr4_2:54504114-54504133 Msa0607580:intron 45.0%
TAACCAGGCACAACTTTAGG+TGG + chr4_2:54504270-54504289 None:intergenic 45.0%
GACTAACCAGGCACAACTTT+AGG + chr4_2:54504273-54504292 None:intergenic 45.0%
TTCATTATTTAGGGGTGGGG+AGG - chr4_2:54504481-54504500 Msa0607580:intron 45.0%
TCATTATTTAGGGGTGGGGA+GGG - chr4_2:54504482-54504501 Msa0607580:intron 45.0%
TAGCTCCTTGATTGCGAACT+TGG - chr4_2:54504532-54504551 Msa0607580:intron 45.0%
GTACAAGTGTTCGTAGTGTC+TGG + chr4_2:54504664-54504683 None:intergenic 45.0%
GGAGGATGGGGAATATATGA+AGG + chr4_2:54504977-54504996 None:intergenic 45.0%
!!! TTATTTTTTGTGGGGGTGGG+GGG + chr4_2:54504998-54505017 None:intergenic 45.0%
AGGTTATTGCAAGCCCTAGT+TGG + chr4_2:54505075-54505094 None:intergenic 45.0%
TTGCAATAACCTGCATCTGC+TGG - chr4_2:54505083-54505102 Msa0607580:intron 45.0%
!!! TGCTGGTGTCATCTTTTCTC+TGG - chr4_2:54505100-54505119 Msa0607580:intron 45.0%
CTGTTCTCTTGTGCATTTGC+TGG - chr4_2:54505191-54505210 Msa0607580:intron 45.0%
TCTGCCAAGAAAGGAACTTG+GGG + chr4_2:54505258-54505277 None:intergenic 45.0%
CTCTGCCAAGAAAGGAACTT+GGG + chr4_2:54505259-54505278 None:intergenic 45.0%
! ATGTAAGGGGTGGAAGCTTT+TGG + chr4_2:54505574-54505593 None:intergenic 45.0%
GCAAGTTTCTCGGATGTAAG+GGG + chr4_2:54505587-54505606 None:intergenic 45.0%
! CTAAGCCTCCCATGCATTTT+TGG - chr4_2:54505881-54505900 Msa0607580:intron 45.0%
ACCACCAGCCAAAAATGCAT+GGG + chr4_2:54505892-54505911 None:intergenic 45.0%
AACCACCAGCCAAAAATGCA+TGG + chr4_2:54505893-54505912 None:intergenic 45.0%
AATTTGAATCCACTAGCGGG+CGG - chr4_2:54506033-54506052 Msa0607580:intron 45.0%
! GTGCTCGTCATTGATTGCTT+CGG - chr4_2:54506143-54506162 Msa0607580:intron 45.0%
! TGCTCGTCATTGATTGCTTC+GGG - chr4_2:54506144-54506163 Msa0607580:intron 45.0%
! GTGCTCGTCATTGATTGCTT+GGG - chr4_2:54506143-54506162 Msa0607580:intron 45.0%
! TCGTCATTGATTGCTTGGGA+TGG - chr4_2:54506252-54506271 Msa0607580:intron 45.0%
! CGTCATTGATTGCTTGGGAT+GGG - chr4_2:54506253-54506272 Msa0607580:intron 45.0%
ACCTCAATAGCGTGGAAAAG+TGG - chr4_2:54506277-54506296 Msa0607580:intron 45.0%
!! TCCACTTTTCCACGCTATTG+AGG + chr4_2:54506281-54506300 None:intergenic 45.0%
! CTAAGCCTCCCATGCATTTT+TGG - chr4_2:54505881-54505900 Msa0607580:intron 45.0%
ACCACCAGCCAAAAATGCAT+GGG + chr4_2:54505892-54505911 None:intergenic 45.0%
AACCACCAGCCAAAAATGCA+TGG + chr4_2:54505893-54505912 None:intergenic 45.0%
AATTTGAATCCACTAGCGGG+CGG - chr4_2:54506033-54506052 Msa0607580:intron 45.0%
! GTGCTCGTCATTGATTGCTT+CGG - chr4_2:54506143-54506162 Msa0607580:intron 45.0%
! TGCTCGTCATTGATTGCTTC+GGG - chr4_2:54506144-54506163 Msa0607580:intron 45.0%
! GTGCTCGTCATTGATTGCTT+GGG - chr4_2:54506143-54506162 Msa0607580:intron 45.0%
! TCGTCATTGATTGCTTGGGA+TGG - chr4_2:54506252-54506271 Msa0607580:intron 45.0%
! CGTCATTGATTGCTTGGGAT+GGG - chr4_2:54506253-54506272 Msa0607580:intron 45.0%
ACCTCAATAGCGTGGAAAAG+TGG - chr4_2:54506277-54506296 Msa0607580:intron 45.0%
!! TCCACTTTTCCACGCTATTG+AGG + chr4_2:54506281-54506300 None:intergenic 45.0%
GCTTTCAAAGACCTCTATGG+AGG - chr4_2:54507614-54507633 Msa0607580:CDS 45.0%
GATAGTAACGACCTCCATAG+AGG + chr4_2:54507628-54507647 None:intergenic 45.0%
GGCCGTTCATTGAAATCATG+AGG + chr4_2:54507731-54507750 None:intergenic 45.0%
!! TCAACCATTGGCTTGGGAAT+TGG + chr4_2:54507752-54507771 None:intergenic 45.0%
!! GGAACTTCAACCATTGGCTT+GGG + chr4_2:54507758-54507777 None:intergenic 45.0%
! AGGAACTTCAACCATTGGCT+TGG + chr4_2:54507759-54507778 None:intergenic 45.0%
TCGACTGTGAGGAAATCAAC+AGG - chr4_2:54507869-54507888 Msa0607580:CDS 45.0%
GAAATCAGATGAAGAGGCGA+AGG - chr4_2:54508015-54508034 Msa0607580:CDS 45.0%
GCGATTCCGATGAGAGAAGA+AGG + chr4_2:54503134-54503153 None:intergenic 50.0%
! GGGTGCAGTTGTTGTTGTGA+CGG + chr4_2:54503272-54503291 None:intergenic 50.0%
! TGTCTCCACCGTGGTTGATA+TGG - chr4_2:54503333-54503352 Msa0607580:three_prime_UTR 50.0%
TCCCTCCAACGACGGAAAAT+CGG - chr4_2:54503390-54503409 Msa0607580:CDS 50.0%
! TCCGATTTTCCGTCGTTGGA+GGG + chr4_2:54503394-54503413 None:intergenic 50.0%
! TTCCGATTTTCCGTCGTTGG+AGG + chr4_2:54503395-54503414 None:intergenic 50.0%
! GAGTTCCGATTTTCCGTCGT+TGG + chr4_2:54503398-54503417 None:intergenic 50.0%
TGCTTCTGCTTCTTCGGAAG+CGG + chr4_2:54503511-54503530 None:intergenic 50.0%
TTCCTCTCTGAACCCTGTCA+AGG - chr4_2:54503534-54503553 Msa0607580:CDS 50.0%
TTCCTTGACAGGGTTCAGAG+AGG + chr4_2:54503539-54503558 None:intergenic 50.0%
AGAACCAATTTCGTTGCCGG+AGG - chr4_2:54503558-54503577 Msa0607580:CDS 50.0%
GCAGCAGCATTGTTAACCTC+CGG + chr4_2:54503577-54503596 None:intergenic 50.0%
TGCTGCTGCTGTGTCAATTC+CGG - chr4_2:54503591-54503610 Msa0607580:CDS 50.0%
TAGGGGAGAGTGGACATACA+CGG - chr4_2:54503986-54504005 Msa0607580:intron 50.0%
GAGAGTGGACATACACGGTT+GGG - chr4_2:54503991-54504010 Msa0607580:intron 50.0%
!! TACACGGTTGGGTTGGACAA+TGG - chr4_2:54504002-54504021 Msa0607580:intron 50.0%
!! GTTGGGTTGGACAATGGAGA+AGG - chr4_2:54504008-54504027 Msa0607580:intron 50.0%
! GTGATTTGCAGGCACCTGTT+GGG - chr4_2:54504031-54504050 Msa0607580:intron 50.0%
AGGCACCTGTTGGGTATGAT+GGG - chr4_2:54504040-54504059 Msa0607580:intron 50.0%
GAGGGAGAATTATGGGGATG+TGG - chr4_2:54504113-54504132 Msa0607580:intron 50.0%
GGCGCAAACTTATCTCCATC+AGG + chr4_2:54504180-54504199 None:intergenic 50.0%
GGTGGATCTTCCTTAGCATC+TGG + chr4_2:54504252-54504271 None:intergenic 50.0%
GATCCACCTAAAGTTGTGCC+TGG - chr4_2:54504264-54504283 Msa0607580:intron 50.0%
TGGTTCAGGAATGGGTGGTA+AGG + chr4_2:54505022-54505041 None:intergenic 50.0%
CAATGTGGTTCAGGAATGGG+TGG + chr4_2:54505027-54505046 None:intergenic 50.0%
AGACCCACTCTTCACCAACT+AGG - chr4_2:54505058-54505077 Msa0607580:intron 50.0%
GACCCACTCTTCACCAACTA+GGG - chr4_2:54505059-54505078 Msa0607580:intron 50.0%
!! AGCCCTAGTTGGTGAAGAGT+GGG + chr4_2:54505064-54505083 None:intergenic 50.0%
!! AAGCCCTAGTTGGTGAAGAG+TGG + chr4_2:54505065-54505084 None:intergenic 50.0%
AAGATGACACCAGCAGATGC+AGG + chr4_2:54505095-54505114 None:intergenic 50.0%
GCTCTGCCAAGAAAGGAACT+TGG + chr4_2:54505260-54505279 None:intergenic 50.0%
AGCAGATGCTCTGCCAAGAA+AGG + chr4_2:54505267-54505286 None:intergenic 50.0%
AGTTTCTCGGATGTAAGGGG+TGG + chr4_2:54505584-54505603 None:intergenic 50.0%
ACCAGCCAAAAATGCATGGG+AGG + chr4_2:54505889-54505908 None:intergenic 50.0%
!!! TCCCATGCATTTTTGGCTGG+TGG - chr4_2:54505888-54505907 Msa0607580:intron 50.0%
! ATTTGAATCCACTAGCGGGC+GGG - chr4_2:54506034-54506053 Msa0607580:intron 50.0%
GAACTCAATGGGCCAGTACA+GGG + chr4_2:54506089-54506108 None:intergenic 50.0%
! GCTCGTCATTGATTGCTTCG+GGG - chr4_2:54506145-54506164 Msa0607580:intron 50.0%
! CTCGTCATTGATTGCTTCGG+GGG - chr4_2:54506146-54506165 Msa0607580:intron 50.0%
! TCGTCATTGATTGCTTCGGG+GGG - chr4_2:54506147-54506166 Msa0607580:intron 50.0%
GAACTCAATGGGCCAGTACA+GGG + chr4_2:54506089-54506108 None:intergenic 50.0%
! GGTGCTCGTCATTGATTGCT+TGG - chr4_2:54506142-54506161 Msa0607580:intron 50.0%
ACCAGCCAAAAATGCATGGG+AGG + chr4_2:54505889-54505908 None:intergenic 50.0%
!!! TCCCATGCATTTTTGGCTGG+TGG - chr4_2:54505888-54505907 Msa0607580:intron 50.0%
! ATTTGAATCCACTAGCGGGC+GGG - chr4_2:54506034-54506053 Msa0607580:intron 50.0%
GAACTCAATGGGCCAGTACA+GGG + chr4_2:54506089-54506108 None:intergenic 50.0%
! GCTCGTCATTGATTGCTTCG+GGG - chr4_2:54506145-54506164 Msa0607580:intron 50.0%
! CTCGTCATTGATTGCTTCGG+GGG - chr4_2:54506146-54506165 Msa0607580:intron 50.0%
! TCGTCATTGATTGCTTCGGG+GGG - chr4_2:54506147-54506166 Msa0607580:intron 50.0%
GAACTCAATGGGCCAGTACA+GGG + chr4_2:54506089-54506108 None:intergenic 50.0%
! GGTGCTCGTCATTGATTGCT+TGG - chr4_2:54506142-54506161 Msa0607580:intron 50.0%
CAAATGGAGAGTCGACTGTG+AGG - chr4_2:54507858-54507877 Msa0607580:CDS 50.0%
ATCAACCACGGTGGAGACAG+CGG + chr4_2:54503332-54503351 None:intergenic 55.0%
! TTTTCCGTCGTTGGAGGGAG+TGG + chr4_2:54503389-54503408 None:intergenic 55.0%
AGAGTCGTCGGAGGGTTCAT+CGG + chr4_2:54503428-54503447 None:intergenic 55.0%
CTTCTGTTCGGCAGAGTCGT+CGG + chr4_2:54503440-54503459 None:intergenic 55.0%
ACAATCACACCGGCGACGAA+TGG - chr4_2:54503616-54503635 Msa0607580:CDS 55.0%
TGTCTTCTCCACCGTTCGTG+TGG + chr4_2:54503756-54503775 None:intergenic 55.0%
TAGGGCAACAAGAGGGGTAG+TGG - chr4_2:54503927-54503946 Msa0607580:intron 55.0%
!! GCAACAAGAGGGGTAGTGGA+AGG - chr4_2:54503931-54503950 Msa0607580:intron 55.0%
GTAGTGAGGTTAGGGGAGAG+TGG - chr4_2:54503976-54503995 Msa0607580:intron 55.0%
GGAGAGTGGACATACACGGT+TGG - chr4_2:54503990-54504009 Msa0607580:intron 55.0%
GTGGACATACACGGTTGGGT+TGG - chr4_2:54503995-54504014 Msa0607580:intron 55.0%
! GGTGATTTGCAGGCACCTGT+TGG - chr4_2:54504030-54504049 Msa0607580:intron 55.0%
CAGGCACCTGTTGGGTATGA+TGG - chr4_2:54504039-54504058 Msa0607580:intron 55.0%
! GGGGATGTGGGTTATGGTGA+AGG - chr4_2:54504126-54504145 Msa0607580:intron 55.0%
CCGTATCTGGTGAGTTGCTG+CGG + chr4_2:54504758-54504777 None:intergenic 55.0%
CCGCAGCAACTCACCAGATA+CGG - chr4_2:54504755-54504774 Msa0607580:intron 55.0%
AGGTGTATCTGGGCCGTATC+TGG + chr4_2:54504771-54504790 None:intergenic 55.0%
CGGTGAAGAACGGGACAAAC+TGG + chr4_2:54504837-54504856 None:intergenic 55.0%
GCTGCCCCAAGTTCCTTTCT+TGG - chr4_2:54505251-54505270 Msa0607580:intron 55.0%
AACACCGTATGTTGGGGGTG+AGG - chr4_2:54505684-54505703 Msa0607580:intron 55.0%
ACACCGTATGTTGGGGGTGA+GGG - chr4_2:54505685-54505704 Msa0607580:intron 55.0%
!!! GCCTCCCATGCATTTTTGGC+TGG - chr4_2:54505885-54505904 Msa0607580:intron 55.0%
! TTTGAATCCACTAGCGGGCG+GGG - chr4_2:54506035-54506054 Msa0607580:intron 55.0%
ACCATGGCAAAGCCCTGTAC+TGG - chr4_2:54506074-54506093 Msa0607580:intron 55.0%
GGAACTCAATGGGCCAGTAC+AGG + chr4_2:54506090-54506109 None:intergenic 55.0%
! CGTCATTGATTGCTTCGGGG+GGG - chr4_2:54506148-54506167 Msa0607580:intron 55.0%
ACCATGGCAAAGCCCTGTAC+TGG - chr4_2:54506074-54506093 Msa0607580:intron 55.0%
GGAACTCAATGGGCCAGTAC+AGG + chr4_2:54506090-54506109 None:intergenic 55.0%
GGATGGGAACCTCAATAGCG+TGG - chr4_2:54506269-54506288 Msa0607580:intron 55.0%
!!! GCCTCCCATGCATTTTTGGC+TGG - chr4_2:54505885-54505904 Msa0607580:intron 55.0%
! TTTGAATCCACTAGCGGGCG+GGG - chr4_2:54506035-54506054 Msa0607580:intron 55.0%
ACCATGGCAAAGCCCTGTAC+TGG - chr4_2:54506074-54506093 Msa0607580:intron 55.0%
GGAACTCAATGGGCCAGTAC+AGG + chr4_2:54506090-54506109 None:intergenic 55.0%
! CGTCATTGATTGCTTCGGGG+GGG - chr4_2:54506148-54506167 Msa0607580:intron 55.0%
ACCATGGCAAAGCCCTGTAC+TGG - chr4_2:54506074-54506093 Msa0607580:intron 55.0%
GGAACTCAATGGGCCAGTAC+AGG + chr4_2:54506090-54506109 None:intergenic 55.0%
GGATGGGAACCTCAATAGCG+TGG - chr4_2:54506269-54506288 Msa0607580:intron 55.0%
ACGGCCAATTCCCAAGCCAA+TGG - chr4_2:54507745-54507764 Msa0607580:CDS 55.0%
CAACAGGAGAGTCGTCTGAG+AGG - chr4_2:54507885-54507904 Msa0607580:CDS 55.0%
GGTGGAGGAAGCAGGTGGTT+CGG + chr4_2:54503299-54503318 None:intergenic 60.0%
TCAACCACGGTGGAGACAGC+GGG + chr4_2:54503331-54503350 None:intergenic 60.0%
ACCACCACTCCCTCCAACGA+CGG - chr4_2:54503382-54503401 Msa0607580:CDS 60.0%
TCGTCGGAGGGTTCATCGGA+GGG + chr4_2:54503424-54503443 None:intergenic 60.0%
TGTTCGGCAGAGTCGTCGGA+GGG + chr4_2:54503436-54503455 None:intergenic 60.0%
GTCGCCGGTGTGATTGTAGC+CGG + chr4_2:54503613-54503632 None:intergenic 60.0%
GTCGCTGTTCCATTCGTCGC+CGG + chr4_2:54503628-54503647 None:intergenic 60.0%
!! GAGGGGTAGTGGAAGGAGCT+TGG - chr4_2:54503938-54503957 Msa0607580:intron 60.0%
ATTTAGGGGTGGGGAGGGTG+AGG - chr4_2:54504487-54504506 Msa0607580:intron 60.0%
!!! TTTTTTGTGGGGGTGGGGGG+AGG + chr4_2:54504995-54505014 None:intergenic 60.0%
TTCGGCCGGTCCCAACAGTA+TGG + chr4_2:54505436-54505455 None:intergenic 60.0%
! GAGGGCGCAATTGGCAGATG+AGG - chr4_2:54505703-54505722 Msa0607580:intron 60.0%
CGGGGGGGCAATTGAAACCA+TGG - chr4_2:54506058-54506077 Msa0607580:intron 60.0%
GCCAGTACAGGGCTTTGCCA+TGG + chr4_2:54506078-54506097 None:intergenic 60.0%
GCCAGTACAGGGCTTTGCCA+TGG + chr4_2:54506078-54506097 None:intergenic 60.0%
CGGGGGGGCAATTGAAACCA+TGG - chr4_2:54506058-54506077 Msa0607580:intron 60.0%
GCCAGTACAGGGCTTTGCCA+TGG + chr4_2:54506078-54506097 None:intergenic 60.0%
GCCAGTACAGGGCTTTGCCA+TGG + chr4_2:54506078-54506097 None:intergenic 60.0%
! GAAGCAGGTGGTTCGGCGGA+GGG + chr4_2:54503292-54503311 None:intergenic 65.0%
! GGAGGAAGCAGGTGGTTCGG+CGG + chr4_2:54503296-54503315 None:intergenic 65.0%
TCGACGGTGGAGGAAGCAGG+TGG + chr4_2:54503304-54503323 None:intergenic 65.0%
GGTTCGACGGTGGAGGAAGC+AGG + chr4_2:54503307-54503326 None:intergenic 65.0%
GGAGACAGCGGGTGGTTCGA+CGG + chr4_2:54503320-54503339 None:intergenic 65.0%
TCCGTCGTTGGAGGGAGTGG+TGG + chr4_2:54503386-54503405 None:intergenic 65.0%
GTCGTCGGAGGGTTCATCGG+AGG + chr4_2:54503425-54503444 None:intergenic 65.0%
CTGTTCGGCAGAGTCGTCGG+AGG + chr4_2:54503437-54503456 None:intergenic 65.0%
GGGTGGGGAGGGTGAGGATT+TGG - chr4_2:54504493-54504512 Msa0607580:intron 65.0%
GCGCCCTCACCCCCAACATA+CGG + chr4_2:54505691-54505710 None:intergenic 65.0%
! GTTGGGGGTGAGGGCGCAAT+TGG - chr4_2:54505694-54505713 Msa0607580:intron 65.0%
GATTGCTTCGGGGGGGACCA+TGG - chr4_2:54506155-54506174 Msa0607580:intron 65.0%
GATTGCTTCGGGGGGGACCA+TGG - chr4_2:54506155-54506174 Msa0607580:intron 65.0%
! GGAAGCAGGTGGTTCGGCGG+AGG + chr4_2:54503293-54503312 None:intergenic 70.0%
AGCGGGTGGTTCGACGGTGG+AGG + chr4_2:54503314-54503333 None:intergenic 70.0%
GACAGCGGGTGGTTCGACGG+TGG + chr4_2:54503317-54503336 None:intergenic 70.0%
ACCACCCGCTGTCTCCACCG+TGG - chr4_2:54503324-54503343 Msa0607580:three_prime_UTR 70.0%
ACCACGGTGGAGACAGCGGG+TGG + chr4_2:54503328-54503347 None:intergenic 70.0%
TGTGGGGGTGGGGGGAGGAT+GGG + chr4_2:54504990-54505009 None:intergenic 70.0%
TTGTGGGGGTGGGGGGAGGA+TGG + chr4_2:54504991-54505010 None:intergenic 70.0%
! GAATCCACTAGCGGGCGGGG+CGG - chr4_2:54506038-54506057 Msa0607580:intron 70.0%
! AATCCACTAGCGGGCGGGGC+GGG - chr4_2:54506039-54506058 Msa0607580:intron 70.0%
! GAATCCACTAGCGGGCGGGG+CGG - chr4_2:54506038-54506057 Msa0607580:intron 70.0%
! AATCCACTAGCGGGCGGGGC+GGG - chr4_2:54506039-54506058 Msa0607580:intron 70.0%
GTGGGGGTGGGGGGAGGATG+GGG + chr4_2:54504989-54505008 None:intergenic 75.0%
! ATCCACTAGCGGGCGGGGCG+GGG - chr4_2:54506040-54506059 Msa0607580:intron 75.0%
! ATCCACTAGCGGGCGGGGCG+GGG - chr4_2:54506040-54506059 Msa0607580:intron 75.0%
!! TCCACTAGCGGGCGGGGCGG+GGG - chr4_2:54506041-54506060 Msa0607580:intron 80.0%
!! TCCACTAGCGGGCGGGGCGG+GGG - chr4_2:54506041-54506060 Msa0607580:intron 80.0%
!! CCACTAGCGGGCGGGGCGGG+GGG - chr4_2:54506042-54506061 Msa0607580:intron 85.0%
!! CACTAGCGGGCGGGGCGGGG+GGG - chr4_2:54506043-54506062 Msa0607580:intron 85.0%
!! CCACTAGCGGGCGGGGCGGG+GGG - chr4_2:54506042-54506061 Msa0607580:intron 85.0%
!! CACTAGCGGGCGGGGCGGGG+GGG - chr4_2:54506043-54506062 Msa0607580:intron 85.0%
! CCCCCCGCCCCGCCCGCTAG+TGG + chr4_2:54506045-54506064 None:intergenic 90.0%
! CCCCCCGCCCCGCCCGCTAG+TGG + chr4_2:54506045-54506064 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54503108 54508346 54503108 ID=Msa0607580;Name=Msa0607580
chr4_2 mRNA 54503108 54508346 54503108 ID=Msa0607580-mRNA-1;Parent=Msa0607580;Name=Msa0607580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=97|1|1|1|1|1|2|268|529
chr4_2 exon 54503108 54503884 54503108 ID=Msa0607580-mRNA-1:exon:13686;Parent=Msa0607580-mRNA-1
chr4_2 exon 54507169 54508346 54507169 ID=Msa0607580-mRNA-1:exon:13685;Parent=Msa0607580-mRNA-1
chr4_2 five_prime_UTR 54508250 54508346 54508250 ID=Msa0607580-mRNA-1:five_prime_utr;Parent=Msa0607580-mRNA-1
chr4_2 CDS 54507169 54508249 54507169 ID=Msa0607580-mRNA-1:cds;Parent=Msa0607580-mRNA-1
chr4_2 CDS 54503376 54503884 54503376 ID=Msa0607580-mRNA-1:cds;Parent=Msa0607580-mRNA-1
chr4_2 three_prime_UTR 54503108 54503375 54503108 ID=Msa0607580-mRNA-1:three_prime_utr;Parent=Msa0607580-mRNA-1
Gene Sequence

>Msa0607580

ATGGATACACTTCAAGCCACATACAAAGATGAAGAGGAAGATGAAGAAATGGTACAACCTTCAACCGTCACAACAACAACTGCACCCTCCGCCGAACCACCTGCTTCCTCCACCGTCGAACCACCCGCTGTCTCCACCGTGGTTGATATGGAATTAACAGACGCGCCTCTAATTACTACCACCACTCCCTCCAACGACGGAAAATCGGAACTCGATCCCTCCGATGAACCCTCCGACGACTCTGCCGAACAGAAGAATTCACCGAAACAGAAAAGAGAACAACCTGATGAAGATGAAGAAGAACCGCTTCCGAAGAAGCAGAAGCAACTTTCCTCTCTGAACCCTGTCAAGGAAGAACCAATTTCGTTGCCGGAGGTTAACAATGCTGCTGCTGCTGTGTCAATTCCGGCTACAATCACACCGGCGACGAATGGAACAGCGACGACGAAGAAAACGAAGAAAAAGAATAACAATGTATGGGCAACAAAATCGAAGAAAAAGACGAAGAAAAACAAAAACAACAACAACGGCAACACCAACAATAACAACCACACGAACGGTGGAGAAGACAGTGTTCTGATAACACCAGTACAGAGATTTCCTGACAAAAGTGACGATACACCGGAGATGAAGATATGTTTATCGAAAGTTTACAAAGCGGAGAAAGTTGAGTTGAGTGAGGATAGGTTAAGTGCAGGGAGCACAAAAGGGTATAGAATGGTTAGGGCAACAAGAGGGGTAGTGGAAGGAGCTTGGTATTTTGAGATAAAGGTAGTGAGGTTAGGGGAGAGTGGACATACACGGTTGGGTTGGACAATGGAGAAGGGTGATTTGCAGGCACCTGTTGGGTATGATGGGAATAGTTTTGGGTATAGGGATATTGATGGGAGTAAGATTCATAAGGCTTTGAGGGAGAATTATGGGGATGTGGGTTATGGTGAAGGAGATGTTATTGGGTTTTATATTAATTTGCCTGATGGAGATAAGTTTGCGCCGAAAAATCAGAATTTGGTTTGGTATAAAGGACAACGGTATGCTTATAATCCAGATGCTAAGGAAGATCCACCTAAAGTTGTGCCTGGAAGTGAGATATCTTTCTTCAAAAATGGTGTATGTCAAGGTGTAGCTTTCAAAGACCTCTATGGAGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTTCCCCATGAACAAAACTGCACAGTTAAGTTCAACTTTGGTCCGGACTTCGAATTTTTTCCTCATGATTTCAATGAACGGCCAATTCCCAAGCCAATGGTTGAAGTTCCTCATCATGGTTTTGAAAATCAAGTTGAAAATGGGGCGTTGACTGAGAAGAAATCTAATGGAGAGTTGAATGAGAGTAAATCAAATGGAGAGTCGACTGTGAGGAAATCAACAGGAGAGTCGTCTGAGAGGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCATATGAGCAAAAATCACATGGAGAGTCGAAGGAGAAGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGGTGGAAGAGAAGAAATCTTAA

Protein sequence

>Msa0607580

MDTLQATYKDEEEDEEMVQPSTVTTTTAPSAEPPASSTVEPPAVSTVVDMELTDAPLITTTTPSNDGKSELDPSDEPSDDSAEQKNSPKQKREQPDEDEEEPLPKKQKQLSSLNPVKEEPISLPEVNNAAAAVSIPATITPATNGTATTKKTKKKNNNVWATKSKKKTKKNKNNNNGNTNNNNHTNGGEDSVLITPVQRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVVEGAWYFEIKVVRLGESGHTRLGWTMEKGDLQAPVGYDGNSFGYRDIDGSKIHKALRENYGDVGYGEGDVIGFYINLPDGDKFAPKNQNLVWYKGQRYAYNPDAKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPHEQNCTVKFNFGPDFEFFPHDFNERPIPKPMVEVPHHGFENQVENGALTEKKSNGELNESKSNGESTVRKSTGESSERKSNGESTEKKSNGESTEKKSNGESYEQKSHGESKEKKSDEEAKEKKSDEEVEEKKS*