AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385670 MtrunA17_Chr2g0329421 98.104 211 4 0 1 211 1 211 6.30e-155 427
Msa1385670 MtrunA17_Chr4g0033611 68.878 196 58 2 1 194 50 244 7.67e-96 280
Msa1385670 MtrunA17_Chr3g0078041 41.304 184 99 3 23 202 46 224 9.10e-41 138
Msa1385670 MtrunA17_Chr2g0329361 36.757 185 104 4 26 198 60 243 4.85e-35 124
Msa1385670 MtrunA17_Chr7g0233911 37.705 183 104 3 24 202 31 207 1.87e-33 119
Msa1385670 MtrunA17_Chr5g0448761 54.128 109 45 3 26 129 59 167 1.03e-21 92.8
Msa1385670 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 182 271 2.32e-21 91.7
Msa1385670 MtrunA17_Chr2g0287061 41.176 102 48 1 26 127 28 117 1.93e-18 83.2
Msa1385670 MtrunA17_Chr6g0458391 40.196 102 60 1 27 127 225 326 3.35e-20 88.2
Msa1385670 MtrunA17_Chr6g0458391 38.318 107 65 1 27 132 91 197 1.40e-16 77.8
Msa1385670 MtrunA17_Chr1g0202341 38.596 114 58 3 26 132 50 158 1.72e-19 86.3
Msa1385670 MtrunA17_Chr3g0082121 40.952 105 60 2 27 129 43 147 1.85e-18 83.2
Msa1385670 MtrunA17_Chr5g0401121 39.815 108 59 3 27 130 56 161 2.57e-18 78.6
Msa1385670 MtrunA17_Chr1g0203721 39.796 98 58 1 29 125 65 162 1.73e-17 80.5
Msa1385670 MtrunA17_Chr2g0291591 34.058 138 86 2 22 157 57 191 1.40e-15 74.7
Msa1385670 MtrunA17_Chr5g0440451 36.538 104 54 2 24 127 40 131 9.32e-15 72.4
Msa1385670 MtrunA17_Chr2g0291581 38.235 102 58 2 27 127 71 168 4.03e-13 67.8
Msa1385670 MtrunA17_Chr3g0080351 31.405 121 69 2 26 132 75 195 1.04e-12 66.6
Msa1385670 MtrunA17_Chr8g0363841 30.088 113 75 2 25 133 12 124 1.55e-12 65.9
Msa1385670 MtrunA17_Chr7g0258861 35.577 104 64 2 26 127 9 111 6.36e-12 63.5
Msa1385670 MtrunA17_Chr2g0324011 38.462 104 60 3 26 127 9 110 2.07e-11 62.4
Msa1385670 MtrunA17_Chr2g0329031 31.304 115 73 3 20 132 7 117 2.11e-11 62.8
Msa1385670 MtrunA17_Chr1g0171741 36.275 102 59 4 32 129 138 237 9.64e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385670 AT3G59470.3 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa1385670 AT3G59470.1 67.391 184 60 0 25 208 68 251 4.32e-95 278
Msa1385670 AT3G59470.2 67.391 184 60 0 25 208 80 263 6.74e-95 278
Msa1385670 AT3G07500.1 42.487 193 100 4 18 199 17 209 4.71e-47 154
Msa1385670 AT2G43280.1 38.462 195 107 4 16 202 7 196 2.01e-35 124
Msa1385670 AT4G12850.1 34.973 183 106 3 24 202 8 181 3.01e-34 120
Msa1385670 AT2G43280.2 39.394 165 91 3 42 202 2 161 1.01e-32 116
Msa1385670 AT4G38180.1 56.481 108 43 2 26 129 72 179 2.60e-25 103
Msa1385670 AT4G12850.4 44.231 104 56 1 24 127 8 109 1.91e-24 94.4
Msa1385670 AT4G12850.2 44.231 104 56 1 24 127 8 109 2.35e-24 94.0
Msa1385670 AT3G06250.2 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa1385670 AT3G06250.2 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa1385670 AT3G06250.1 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa1385670 AT3G06250.1 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa1385670 AT3G06250.3 44.118 102 45 1 26 127 27 116 9.96e-22 93.2
Msa1385670 AT3G06250.3 41.509 106 50 1 26 131 189 282 1.35e-21 92.8
Msa1385670 AT5G18960.2 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa1385670 AT5G18960.2 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa1385670 AT5G18960.1 43.137 102 46 1 26 127 42 131 3.16e-21 91.7
Msa1385670 AT5G18960.1 40.367 109 53 1 23 131 207 303 3.38e-21 91.7
Msa1385670 AT1G52520.1 36.792 106 64 1 22 127 80 182 7.54e-17 79.0
Msa1385670 AT1G80010.1 36.792 106 64 1 27 132 95 197 2.05e-15 74.7
Msa1385670 AT4G19990.6 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa1385670 AT4G19990.2 30.000 150 75 3 24 159 21 154 2.23e-14 71.6
Msa1385670 AT4G19990.7 30.000 150 75 3 24 159 35 168 2.41e-14 71.6
Msa1385670 AT4G19990.3 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa1385670 AT4G19990.4 30.000 150 75 3 24 159 21 154 2.63e-14 71.6
Msa1385670 AT4G19990.5 30.000 150 75 3 24 159 21 154 2.81e-14 71.2
Msa1385670 AT5G28530.1 31.707 123 78 4 10 127 38 159 5.66e-13 67.4
Msa1385670 AT5G28530.3 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa1385670 AT5G28530.2 31.707 123 78 4 10 127 38 159 5.87e-13 67.4
Msa1385670 AT5G28530.4 30.597 134 85 5 1 127 27 159 5.96e-13 67.4
Msa1385670 AT5G28530.5 30.597 134 85 5 1 127 27 159 6.06e-13 67.4
Msa1385670 AT2G32250.6 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa1385670 AT2G32250.1 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa1385670 AT2G32250.3 33.333 129 78 3 5 129 14 138 8.91e-13 67.0
Msa1385670 AT2G32250.2 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa1385670 AT2G32250.4 33.333 129 78 3 5 129 14 138 8.99e-13 67.0
Msa1385670 AT2G32250.5 33.333 129 78 3 5 129 14 138 9.59e-13 67.0
Msa1385670 AT3G22170.2 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa1385670 AT3G22170.1 30.137 146 85 4 2 132 46 189 1.05e-11 63.9
Msa1385670 AT2G32250.7 35.000 100 59 2 32 129 2 97 1.68e-11 63.2
Msa1385670 AT2G32250.8 35.000 100 59 2 32 129 2 97 1.79e-11 63.2
Msa1385670 AT2G27110.2 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa1385670 AT2G27110.1 28.708 209 123 7 4 206 27 215 1.94e-11 63.2
Msa1385670 AT1G76320.2 35.000 100 59 3 32 129 2 97 5.61e-11 61.6
Msa1385670 AT1G76320.1 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa1385670 AT1G76320.4 35.000 100 59 3 32 129 2 97 6.00e-11 61.6
Msa1385670 AT1G76320.3 35.000 100 59 3 32 129 2 97 7.51e-11 61.2

Find 73 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATGCCTCACCATTAC+TGG 0.248927 tig0020769:+1974 Msa1385670:intergenic
AGGCGTGATGGATCTGTTAT+TGG 0.276667 tig0020769:-1666 Msa1385670:CDS
TGGTTGCAGGGCAATGATTA+TGG 0.280378 tig0020769:-1559 Msa1385670:CDS
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 tig0020769:-1572 Msa1385670:CDS
CAGGAACTATTGAGGTGATT+TGG 0.320322 tig0020769:+1826 Msa1385670:intergenic
TTGTAACTCAGTCCAGCTTT+AGG 0.332915 tig0020769:-424 Msa1385670:three_prime_UTR
AGCGAGCTGAAACCTATAAA+AGG 0.338658 tig0020769:-655 Msa1385670:CDS
GTTCTCATAACCGATGTTAC+AGG 0.348049 tig0020769:+1807 Msa1385670:intergenic
AAGTCCCTTCTGCCTCTTCC+AGG 0.350515 tig0020769:+1468 Msa1385670:intergenic
GTTCAGTTTGTTAAGTTCAA+TGG 0.356308 tig0020769:-384 Msa1385670:three_prime_UTR
CAATGGAATTCAATATTCAT+TGG 0.361135 tig0020769:-367 Msa1385670:three_prime_UTR
AATATGACTCAAGATTCTTC+TGG 0.372511 tig0020769:-1855 Msa1385670:CDS
TTTCGATCCAACTGATGAAC+AGG 0.398044 tig0020769:-1889 Msa1385670:five_prime_UTR
GCATTAGCAAATGCTACTAT+TGG 0.399597 tig0020769:-1960 Msa1385670:five_prime_UTR
GGAAATTAAATTCTGGTCTA+TGG 0.402271 tig0020769:-1533 Msa1385670:CDS
AGTAGAGAGTGTGAAGGAGA+TGG 0.412908 tig0020769:-564 Msa1385670:CDS
ATGGTGAGGAAATTAAATTC+TGG 0.421065 tig0020769:-1540 Msa1385670:CDS
GGAATAAGAAAATTCTATCA+TGG 0.429067 tig0020769:+210 Msa1385670:intergenic
ACAAGAGGGTCAGTTTCAAT+TGG 0.447254 tig0020769:-531 Msa1385670:CDS
ATAGCATTAATTCACAAGAA+TGG 0.453968 tig0020769:+271 Msa1385670:intergenic
GGCGTGATGGATCTGTTATT+GGG 0.455689 tig0020769:-1665 Msa1385670:CDS
CTTCGTTTATGAGCAATATC+CGG 0.471781 tig0020769:-1448 Msa1385670:intron
TTGTAAATTTGATTCATGGC+TGG 0.473514 tig0020769:-177 None:intergenic
GCTCTAGTTTGTAACAAAGA+AGG 0.478666 tig0020769:-1639 Msa1385670:CDS
AACTCACTTGCACCTAAAGC+TGG 0.484241 tig0020769:+412 Msa1385670:intergenic
AAATGCATGTGCTTCAGCTT+CGG 0.486804 tig0020769:+1749 Msa1385670:intergenic
GGTGCAGTGGAGATTGAGAT+TGG 0.489609 tig0020769:-2002 Msa1385670:intron
AATTCATATGCTACACGTGT+TGG 0.492545 tig0020769:-1723 Msa1385670:CDS
TGATGGATCTGTTATTGGGC+GGG 0.492905 tig0020769:-1661 Msa1385670:CDS
TCTTGATCCTGTTCATCAGT+TGG 0.497177 tig0020769:+1882 Msa1385670:intergenic
CTTTATCAGTGAATGAATGA+TGG 0.507759 tig0020769:-487 Msa1385670:three_prime_UTR
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 tig0020769:-1571 Msa1385670:CDS
CTGCCTCTTCCAGGTGTCAG+AGG 0.510409 tig0020769:+1477 Msa1385670:intergenic
CTCAATAGTTCCTGTAACAT+CGG 0.518345 tig0020769:-1817 Msa1385670:CDS
GAATAAGAAAATTCTATCAT+GGG 0.524623 tig0020769:+211 Msa1385670:intergenic
TACAAACTCCTGGCCGATGT+AGG 0.525221 tig0020769:+1773 Msa1385670:intergenic
ACAAGCGGGAAAAGATTGTA+AGG 0.526019 tig0020769:-1602 Msa1385670:CDS
CACACACATCCTCTGACACC+TGG 0.532917 tig0020769:-1486 Msa1385670:CDS
TACAATAAGCTGCTGAAATG+TGG 0.534589 tig0020769:-2831 Msa1385670:five_prime_UTR
CTCTCAAGATCAAGGCGTGA+TGG 0.535255 tig0020769:-1678 Msa1385670:CDS
ACAAACTCCTGGCCGATGTA+GGG 0.537780 tig0020769:+1774 Msa1385670:intergenic
TTTCAGAATGCCTGACAAGC+GGG 0.539722 tig0020769:-1616 Msa1385670:CDS
GACTAGTTCAGTCAATGTAC+AGG 0.545014 tig0020769:-307 Msa1385670:three_prime_UTR
CATCCTCTGACACCTGGAAG+AGG 0.555269 tig0020769:-1480 Msa1385670:CDS
GACTCAAGATTCTTCTGGAG+TGG 0.558618 tig0020769:-1850 Msa1385670:CDS
TAAGTAAGCTCTCAAGATCA+AGG 0.559347 tig0020769:-1686 Msa1385670:CDS
CAAATTTACAAAATTAACCA+TGG 0.560215 tig0020769:+189 Msa1385670:intergenic
TAAGGCAAAGGGCAGAAACA+AGG 0.561852 tig0020769:-1584 Msa1385670:CDS
TCGAGAACTAACTCAACAGT+TGG 0.562574 tig0020769:-690 Msa1385670:CDS
TGACACCTGGAAGAGGCAGA+AGG 0.566441 tig0020769:-1473 Msa1385670:CDS
AAATATAAATAATGCTACAC+AGG 0.567351 tig0020769:+2858 Msa1385670:intergenic
TGATGAACCCTACATCGGCC+AGG 0.568038 tig0020769:-1781 Msa1385670:CDS
GGGAAAAGATTGTAAGGCAA+AGG 0.569600 tig0020769:-1596 Msa1385670:CDS
GGAAAAGATTGTAAGGCAAA+GGG 0.570713 tig0020769:-1595 Msa1385670:CDS
CAGCTTCGGATACAAACTCC+TGG 0.571675 tig0020769:+1763 Msa1385670:intergenic
GGACTGAGTTACAAGTTCAA+TGG 0.572522 tig0020769:+433 Msa1385670:intergenic
CGATGTTACAGGAACTATTG+AGG 0.587098 tig0020769:+1818 Msa1385670:intergenic
GACACCTGGAAGAGGCAGAA+GGG 0.590498 tig0020769:-1472 Msa1385670:CDS
GATGGAAGCTAAAGAACAAG+AGG 0.602786 tig0020769:-546 Msa1385670:CDS
TGTACTCATATAACAAGTCA+AGG 0.602934 tig0020769:+630 Msa1385670:intergenic
GTGATGGATCTGTTATTGGG+CGG 0.611640 tig0020769:-1662 Msa1385670:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 tig0020769:-1579 Msa1385670:CDS
AGCAAATGCTACTATTGGAG+AGG 0.632541 tig0020769:-1955 Msa1385670:five_prime_UTR
GTTTCAGAATGCCTGACAAG+CGG 0.633841 tig0020769:-1617 Msa1385670:CDS
GAGATTGGTGACTCCAGTAA+TGG 0.635105 tig0020769:-1987 Msa1385670:five_prime_UTR
ACAATTGATGAACCCTACAT+CGG 0.643960 tig0020769:-1786 Msa1385670:CDS
TGGTGACTCCAGTAATGGTG+AGG 0.657202 tig0020769:-1982 Msa1385670:five_prime_UTR
AAGGCAAAGGGCAGAAACAA+GGG 0.671184 tig0020769:-1583 Msa1385670:CDS
GCAGGGCAATGATTATGGTG+AGG 0.678028 tig0020769:-1554 Msa1385670:CDS
GCACATAGTAGAGAGTGTGA+AGG 0.682029 tig0020769:-570 Msa1385670:CDS
ATGGAAGCTAAAGAACAAGA+GGG 0.719285 tig0020769:-545 Msa1385670:CDS
ATTCACAAGAATGGACTCAG+AGG 0.720890 tig0020769:+280 Msa1385670:intergenic
CTTGTTATATGAGTACATCG+AGG 0.731335 tig0020769:-624 Msa1385670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTAATAGATTAATAAATTT+TGG + tig0020769:447-466 Msa1385670:intergenic 10.0%
!!! TTTTTTTCTTATAAGAAATT+AGG - tig0020769:724-743 Msa1385670:intron 10.0%
!!! TTTTTTCTTATAAGAAATTA+GGG - tig0020769:725-744 Msa1385670:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0020769:2296-2315 Msa1385670:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0020769:2296-2315 Msa1385670:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0020769:2296-2315 Msa1385670:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + tig0020769:2302-2321 Msa1385670:intergenic 100.0%
!!! TCTTTTTCTTTTTTTCATTT+AGG - tig0020769:542-561 Msa1385670:CDS 15.0%
!!! TTTTTTTCATTTAGGTTTTT+GGG - tig0020769:550-569 Msa1385670:CDS 15.0%
!! GGGAAATTATTATTAATAAT+CGG - tig0020769:751-770 Msa1385670:intron 15.0%
!!! TCTTATATCAAATTTTTTGT+TGG - tig0020769:1037-1056 Msa1385670:intron 15.0%
!!! TTTTAAATAAAGATTTGTAC+AGG + tig0020769:1728-1747 Msa1385670:intergenic 15.0%
!! ATAAAAACAAATATGTAAGA+CGG + tig0020769:2322-2341 Msa1385670:intergenic 15.0%
!!! AATTTTGTAAATTTGATTCA+TGG - tig0020769:2879-2898 Msa1385670:five_prime_UTR 15.0%
!! AAATATAAATAATGCTACAC+AGG + tig0020769:205-224 None:intergenic 20.0%
!!! TGCTTCTTTTAGTAATAAAT+AGG - tig0020769:278-297 Msa1385670:three_prime_UTR 20.0%
!! TTGGATTTGATAAAACTTAA+CGG + tig0020769:428-447 Msa1385670:intergenic 20.0%
!! AAAATATGAAAATAACCATC+TGG - tig0020769:482-501 Msa1385670:three_prime_UTR 20.0%
!! GAAAAAAATTGACAATCTTT+AGG + tig0020769:524-543 Msa1385670:intergenic 20.0%
!!! CTTTTTTTCATTTAGGTTTT+TGG - tig0020769:549-568 Msa1385670:CDS 20.0%
!!! AAATATTTAGTGTCATTCAT+AGG - tig0020769:804-823 Msa1385670:intron 20.0%
!!! AATATTTAGTGTCATTCATA+GGG - tig0020769:805-824 Msa1385670:intron 20.0%
!!! TAGTATTTAGTTTAAACCAT+AGG - tig0020769:880-899 Msa1385670:intron 20.0%
!!! AGTATTTAGTTTAAACCATA+GGG - tig0020769:881-900 Msa1385670:intron 20.0%
!!! AATTCCAAAATTATCCTTTT+TGG + tig0020769:910-929 Msa1385670:intergenic 20.0%
!! AGTGAAAAAAAAAAAAGAAG+GGG + tig0020769:1701-1720 Msa1385670:intergenic 20.0%
!! GAGTGAAAAAAAAAAAAGAA+GGG + tig0020769:1702-1721 Msa1385670:intergenic 20.0%
!! AGAGTGAAAAAAAAAAAAGA+AGG + tig0020769:1703-1722 Msa1385670:intergenic 20.0%
!! AAGTGAAAAGATTAAATGAA+AGG - tig0020769:1786-1805 Msa1385670:CDS 20.0%
!! TAAAAACAAATATGTAAGAC+GGG + tig0020769:2321-2340 Msa1385670:intergenic 20.0%
!! GAATAAGAAAATTCTATCAT+GGG + tig0020769:2852-2871 Msa1385670:intergenic 20.0%
!! CAAATTTACAAAATTAACCA+TGG + tig0020769:2874-2893 Msa1385670:intergenic 20.0%
! ATGGTTATTACTGAGTTATA+AGG + tig0020769:390-409 Msa1385670:intergenic 25.0%
! AATCTTTAGGTAAAGCTTAA+TGG + tig0020769:511-530 Msa1385670:intergenic 25.0%
!!! TTTAAGTTGACTGATCTTTA+TGG - tig0020769:588-607 Msa1385670:CDS 25.0%
! ATGCTAACTTAACTAGTAAT+CGG - tig0020769:689-708 Msa1385670:CDS 25.0%
!! GTTTCCAAAAAGGATAATTT+TGG - tig0020769:903-922 Msa1385670:intron 25.0%
! GTGAAAAAAAAAAAAGAAGG+GGG + tig0020769:1700-1719 Msa1385670:intergenic 25.0%
! GATGGAAATAAAAAACCAAA+AGG - tig0020769:1812-1831 Msa1385670:CDS 25.0%
! AAAAAACTATGCCCATTTAA+GGG + tig0020769:1838-1857 Msa1385670:intergenic 25.0%
! TAAAAAACTATGCCCATTTA+AGG + tig0020769:1839-1858 Msa1385670:intergenic 25.0%
! TTTACAATGAAAAATCATCG+AGG - tig0020769:1862-1881 Msa1385670:exon 25.0%
! CTGAAACCATTAGAATTTAA+AGG - tig0020769:1890-1909 Msa1385670:five_prime_UTR 25.0%
! TGAGATCCTTTAAATTCTAA+TGG + tig0020769:1899-1918 Msa1385670:intergenic 25.0%
! GATATAAACATTGAAGTCTT+TGG + tig0020769:2007-2026 Msa1385670:intergenic 25.0%
!!! TCCATTTTAATTTATCTTCG+AGG - tig0020769:2041-2060 Msa1385670:intron 25.0%
! ACCTCGAAGATAAATTAAAA+TGG + tig0020769:2045-2064 Msa1385670:intergenic 25.0%
! AATCCATACACATGAAAAAT+AGG - tig0020769:2073-2092 Msa1385670:intron 25.0%
!!! TTACCTATTTTTCATGTGTA+TGG + tig0020769:2079-2098 Msa1385670:intergenic 25.0%
! AAAATAGGTAAAATTACTCC+CGG - tig0020769:2088-2107 Msa1385670:intron 25.0%
!! ATTTTGCCAGGTAAATATTT+TGG - tig0020769:2199-2218 Msa1385670:intron 25.0%
! AATTCATGTTACATGTCTTT+GGG - tig0020769:2260-2279 Msa1385670:intron 25.0%
! AAAAACAAATATGTAAGACG+GGG + tig0020769:2320-2339 Msa1385670:intergenic 25.0%
! CAATGGAATTCAATATTCAT+TGG - tig0020769:2693-2712 Msa1385670:intron 25.0%
! ATAGCATTAATTCACAAGAA+TGG + tig0020769:2792-2811 Msa1385670:intergenic 25.0%
! GGAATAAGAAAATTCTATCA+TGG + tig0020769:2853-2872 Msa1385670:intergenic 25.0%
!! GATAGAATTTTCTTATTCCA+TGG - tig0020769:2854-2873 Msa1385670:five_prime_UTR 25.0%
ATAACTCAGTAATAACCATC+TGG - tig0020769:391-410 Msa1385670:three_prime_UTR 30.0%
! GATTTTGTGCAAAGTCTTTT+TGG - tig0020769:659-678 Msa1385670:CDS 30.0%
TTCTTATAAGAAATTAGGGC+AGG - tig0020769:729-748 Msa1385670:intron 30.0%
TCTTATAAGAAATTAGGGCA+GGG - tig0020769:730-749 Msa1385670:intron 30.0%
!!! ATCGGTTTTATTTGTTGAAG+TGG - tig0020769:769-788 Msa1385670:intron 30.0%
!!! GTTTTATTTGTTGAAGTGGA+GGG - tig0020769:773-792 Msa1385670:intron 30.0%
!! ATTAGCAACTTTGACTTGTA+TGG - tig0020769:836-855 Msa1385670:intron 30.0%
AATATGACTCAAGATTCTTC+TGG - tig0020769:1205-1224 Msa1385670:intron 30.0%
ATGGTGAGGAAATTAAATTC+TGG - tig0020769:1520-1539 Msa1385670:CDS 30.0%
GGAAATTAAATTCTGGTCTA+TGG - tig0020769:1527-1546 Msa1385670:CDS 30.0%
!! TTTCTAGAACTGCAAATAAC+TGG + tig0020769:1652-1671 Msa1385670:intergenic 30.0%
TGAAACATAGTAAAACAGTG+TGG - tig0020769:1751-1770 Msa1385670:CDS 30.0%
AGATTAAATGAAAGGAGAGA+TGG - tig0020769:1794-1813 Msa1385670:CDS 30.0%
AAATAGGTAAAATTACTCCC+GGG - tig0020769:2089-2108 Msa1385670:intron 30.0%
CAATTCATGTTACATGTCTT+TGG - tig0020769:2259-2278 Msa1385670:intron 30.0%
AAAACAAATATGTAAGACGG+GGG + tig0020769:2319-2338 Msa1385670:intergenic 30.0%
! TTTTTATGCAATTTCCAGAG+TGG - tig0020769:2335-2354 Msa1385670:intron 30.0%
TGTACTCATATAACAAGTCA+AGG + tig0020769:2433-2452 Msa1385670:intergenic 30.0%
CTTTATCAGTGAATGAATGA+TGG - tig0020769:2573-2592 Msa1385670:intron 30.0%
!! GTTCAGTTTGTTAAGTTCAA+TGG - tig0020769:2676-2695 Msa1385670:intron 30.0%
TACAATAAGCTGCTGAAATG+TGG - tig0020769:229-248 Msa1385670:three_prime_UTR 35.0%
TCTTTCTTCTATGTTTGAGC+TGG - tig0020769:335-354 Msa1385670:three_prime_UTR 35.0%
CTTTCTTCTATGTTTGAGCT+GGG - tig0020769:336-355 Msa1385670:three_prime_UTR 35.0%
! GTAATAACCATCTGGAATTC+TGG - tig0020769:399-418 Msa1385670:three_prime_UTR 35.0%
TTTGCACAAAATCAAAGCGA+AGG + tig0020769:652-671 Msa1385670:intergenic 35.0%
CTTATAAGAAATTAGGGCAG+GGG - tig0020769:731-750 Msa1385670:intron 35.0%
!!! GGTTTTATTTGTTGAAGTGG+AGG - tig0020769:772-791 Msa1385670:intron 35.0%
CAAGTCAAAGTTGCTAATAC+AGG + tig0020769:834-853 Msa1385670:intergenic 35.0%
AAACCATAGGGTTTCCAAAA+AGG - tig0020769:893-912 Msa1385670:intron 35.0%
!! TATCCTTTTTGGAAACCCTA+TGG + tig0020769:899-918 Msa1385670:intergenic 35.0%
!!! CAAATTTTTTGTTGGTGCAG+TGG - tig0020769:1045-1064 Msa1385670:intron 35.0%
GCATTAGCAAATGCTACTAT+TGG - tig0020769:1100-1119 Msa1385670:intron 35.0%
CTCAATAGTTCCTGTAACAT+CGG - tig0020769:1243-1262 Msa1385670:intron 35.0%
ACAATTGATGAACCCTACAT+CGG - tig0020769:1274-1293 Msa1385670:intron 35.0%
AATTCATATGCTACACGTGT+TGG - tig0020769:1337-1356 Msa1385670:intron 35.0%
TAAGTAAGCTCTCAAGATCA+AGG - tig0020769:1374-1393 Msa1385670:intron 35.0%
! GCTCTAGTTTGTAACAAAGA+AGG - tig0020769:1421-1440 Msa1385670:intron 35.0%
GGAAAAGATTGTAAGGCAAA+GGG - tig0020769:1465-1484 Msa1385670:CDS 35.0%
CTTCGTTTATGAGCAATATC+CGG - tig0020769:1612-1631 Msa1385670:CDS 35.0%
!! TGCAGTTCTAGAAAAGTGTA+TGG - tig0020769:1658-1677 Msa1385670:CDS 35.0%
! AGAAAAGTGTATGGTCTGTT+TGG - tig0020769:1667-1686 Msa1385670:CDS 35.0%
AAAACCAAAAGGCCCTTAAA+TGG - tig0020769:1823-1842 Msa1385670:CDS 35.0%
AAACCAAAAGGCCCTTAAAT+GGG - tig0020769:1824-1843 Msa1385670:CDS 35.0%
AATAGGTAAAATTACTCCCG+GGG - tig0020769:2090-2109 Msa1385670:intron 35.0%
ATGCACTTAACTTAGAGTGT+TGG - tig0020769:2117-2136 Msa1385670:intron 35.0%
!! GAAACTCGAAGTATCGATTT+GGG + tig0020769:2172-2191 Msa1385670:intergenic 35.0%
!! AGAAACTCGAAGTATCGATT+TGG + tig0020769:2173-2192 Msa1385670:intergenic 35.0%
! AAATCGATACTTCGAGTTTC+TGG - tig0020769:2172-2191 Msa1385670:intron 35.0%
CTGTTGCCAAAATATTTACC+TGG + tig0020769:2208-2227 Msa1385670:intergenic 35.0%
AAACAAATATGTAAGACGGG+GGG + tig0020769:2318-2337 Msa1385670:intergenic 35.0%
! CAAGTCAAGGTTCCTTTTAT+AGG + tig0020769:2420-2439 Msa1385670:intergenic 35.0%
! CTTGTTATATGAGTACATCG+AGG - tig0020769:2436-2455 Msa1385670:intron 35.0%
ATGGAAGCTAAAGAACAAGA+GGG - tig0020769:2515-2534 Msa1385670:intron 35.0%
AAAGCTTAATGGCATCCAGA+TGG + tig0020769:500-519 Msa1385670:intergenic 40.0%
AGCAAATGCTACTATTGGAG+AGG - tig0020769:1105-1124 Msa1385670:intron 40.0%
TTTCGATCCAACTGATGAAC+AGG - tig0020769:1171-1190 Msa1385670:intron 40.0%
TCTTGATCCTGTTCATCAGT+TGG + tig0020769:1181-1200 Msa1385670:intergenic 40.0%
CAGGAACTATTGAGGTGATT+TGG + tig0020769:1237-1256 Msa1385670:intergenic 40.0%
CGATGTTACAGGAACTATTG+AGG + tig0020769:1245-1264 Msa1385670:intergenic 40.0%
GTTCTCATAACCGATGTTAC+AGG + tig0020769:1256-1275 Msa1385670:intergenic 40.0%
AAATGCATGTGCTTCAGCTT+CGG + tig0020769:1314-1333 Msa1385670:intergenic 40.0%
ACAAGCGGGAAAAGATTGTA+AGG - tig0020769:1458-1477 Msa1385670:CDS 40.0%
GGGAAAAGATTGTAAGGCAA+AGG - tig0020769:1464-1483 Msa1385670:CDS 40.0%
ACTGGTAGAACATGACTAAC+CGG + tig0020769:1634-1653 Msa1385670:intergenic 40.0%
ATAGGTAAAATTACTCCCGG+GGG - tig0020769:2091-2110 Msa1385670:intron 40.0%
!!! GTTTCTGGAGTAATTTTGCC+AGG - tig0020769:2187-2206 Msa1385670:intron 40.0%
AACAAATATGTAAGACGGGG+GGG + tig0020769:2317-2336 Msa1385670:intergenic 40.0%
TCGAGAACTAACTCAACAGT+TGG - tig0020769:2370-2389 Msa1385670:intron 40.0%
AGCGAGCTGAAACCTATAAA+AGG - tig0020769:2405-2424 Msa1385670:intron 40.0%
GATGGAAGCTAAAGAACAAG+AGG - tig0020769:2514-2533 Msa1385670:intron 40.0%
ACAAGAGGGTCAGTTTCAAT+TGG - tig0020769:2529-2548 Msa1385670:intron 40.0%
GGACTGAGTTACAAGTTCAA+TGG + tig0020769:2630-2649 Msa1385670:intergenic 40.0%
TTGTAACTCAGTCCAGCTTT+AGG - tig0020769:2636-2655 Msa1385670:intron 40.0%
! GACTAGTTCAGTCAATGTAC+AGG - tig0020769:2753-2772 Msa1385670:intron 40.0%
! ATTCACAAGAATGGACTCAG+AGG + tig0020769:2783-2802 Msa1385670:intergenic 40.0%
! GAGATTGGTGACTCCAGTAA+TGG - tig0020769:1073-1092 Msa1385670:intron 45.0%
TGCTAATGCCTCACCATTAC+TGG + tig0020769:1089-1108 Msa1385670:intergenic 45.0%
! GACTCAAGATTCTTCTGGAG+TGG - tig0020769:1210-1229 Msa1385670:intron 45.0%
!! AGGCGTGATGGATCTGTTAT+TGG - tig0020769:1394-1413 Msa1385670:intron 45.0%
!! GGCGTGATGGATCTGTTATT+GGG - tig0020769:1395-1414 Msa1385670:intron 45.0%
!! GTGATGGATCTGTTATTGGG+CGG - tig0020769:1398-1417 Msa1385670:intron 45.0%
! TGATGGATCTGTTATTGGGC+GGG - tig0020769:1399-1418 Msa1385670:intron 45.0%
GTTTCAGAATGCCTGACAAG+CGG - tig0020769:1443-1462 Msa1385670:intron 45.0%
TTTCAGAATGCCTGACAAGC+GGG - tig0020769:1444-1463 Msa1385670:intron 45.0%
! ACAATCTTTTCCCGCTTGTC+AGG + tig0020769:1457-1476 Msa1385670:intergenic 45.0%
TAAGGCAAAGGGCAGAAACA+AGG - tig0020769:1476-1495 Msa1385670:CDS 45.0%
AAGGCAAAGGGCAGAAACAA+GGG - tig0020769:1477-1496 Msa1385670:CDS 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG - tig0020769:1489-1508 Msa1385670:CDS 45.0%
TGGTTGCAGGGCAATGATTA+TGG - tig0020769:1501-1520 Msa1385670:CDS 45.0%
! ATGCCCATTTAAGGGCCTTT+TGG + tig0020769:1830-1849 Msa1385670:intergenic 45.0%
AAGTTAAGTGCATAGACCCC+CGG + tig0020769:2110-2129 Msa1385670:intergenic 45.0%
ACAAATATGTAAGACGGGGG+GGG + tig0020769:2316-2335 Msa1385670:intergenic 45.0%
! GCACATAGTAGAGAGTGTGA+AGG - tig0020769:2490-2509 Msa1385670:intron 45.0%
! AGTAGAGAGTGTGAAGGAGA+TGG - tig0020769:2496-2515 Msa1385670:intron 45.0%
AACTCACTTGCACCTAAAGC+TGG + tig0020769:2651-2670 Msa1385670:intergenic 45.0%
ACGGCATCCAGAATTCCAGA+TGG + tig0020769:409-428 Msa1385670:intergenic 50.0%
CCGAGTGATACTCTACAGAG+CGG + tig0020769:1008-1027 Msa1385670:intergenic 50.0%
! CCGCTCTGTAGAGTATCACT+CGG - tig0020769:1005-1024 Msa1385670:intron 50.0%
GGTGCAGTGGAGATTGAGAT+TGG - tig0020769:1058-1077 Msa1385670:intron 50.0%
TGGTGACTCCAGTAATGGTG+AGG - tig0020769:1078-1097 Msa1385670:intron 50.0%
ACAAACTCCTGGCCGATGTA+GGG + tig0020769:1289-1308 Msa1385670:intergenic 50.0%
TACAAACTCCTGGCCGATGT+AGG + tig0020769:1290-1309 Msa1385670:intergenic 50.0%
CAGCTTCGGATACAAACTCC+TGG + tig0020769:1300-1319 Msa1385670:intergenic 50.0%
CTCTCAAGATCAAGGCGTGA+TGG - tig0020769:1382-1401 Msa1385670:intron 50.0%
CAAAGGGCAGAAACAAGGGT+TGG - tig0020769:1481-1500 Msa1385670:CDS 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG - tig0020769:1488-1507 Msa1385670:CDS 50.0%
GCAGGGCAATGATTATGGTG+AGG - tig0020769:1506-1525 Msa1385670:CDS 50.0%
AGTTAAGTGCATAGACCCCC+GGG + tig0020769:2109-2128 Msa1385670:intergenic 50.0%
AAATATGTAAGACGGGGGGG+GGG + tig0020769:2314-2333 Msa1385670:intergenic 50.0%
CAAATATGTAAGACGGGGGG+GGG + tig0020769:2315-2334 Msa1385670:intergenic 50.0%
TGATGAACCCTACATCGGCC+AGG - tig0020769:1279-1298 Msa1385670:intron 55.0%
CACACACATCCTCTGACACC+TGG - tig0020769:1574-1593 Msa1385670:CDS 55.0%
CATCCTCTGACACCTGGAAG+AGG - tig0020769:1580-1599 Msa1385670:CDS 55.0%
TGACACCTGGAAGAGGCAGA+AGG - tig0020769:1587-1606 Msa1385670:CDS 55.0%
GACACCTGGAAGAGGCAGAA+GGG - tig0020769:1588-1607 Msa1385670:CDS 55.0%
AAGTCCCTTCTGCCTCTTCC+AGG + tig0020769:1595-1614 Msa1385670:intergenic 55.0%
AATATGTAAGACGGGGGGGG+GGG + tig0020769:2313-2332 Msa1385670:intergenic 55.0%
GAACTCTGTCGTGTCCACTC+TGG + tig0020769:2352-2371 Msa1385670:intergenic 55.0%
CTGCCTCTTCCAGGTGTCAG+AGG + tig0020769:1586-1605 Msa1385670:intergenic 60.0%
ATATGTAAGACGGGGGGGGG+GGG + tig0020769:2312-2331 Msa1385670:intergenic 60.0%
TATGTAAGACGGGGGGGGGG+GGG + tig0020769:2311-2330 Msa1385670:intergenic 65.0%
GGGGGGGGGGGACTGAAAAG+GGG + tig0020769:2287-2306 Msa1385670:intergenic 70.0%
GGGGGGGGGGGGACTGAAAA+GGG + tig0020769:2288-2307 Msa1385670:intergenic 70.0%
ATGTAAGACGGGGGGGGGGG+GGG + tig0020769:2310-2329 Msa1385670:intergenic 70.0%
GGGGGGGGGGGGGACTGAAA+AGG + tig0020769:2289-2308 Msa1385670:intergenic 75.0%
TGTAAGACGGGGGGGGGGGG+GGG + tig0020769:2309-2328 Msa1385670:intergenic 75.0%
! TAAGACGGGGGGGGGGGGGG+GGG + tig0020769:2307-2326 Msa1385670:intergenic 80.0%
! GTAAGACGGGGGGGGGGGGG+GGG + tig0020769:2308-2327 Msa1385670:intergenic 80.0%
! AAGACGGGGGGGGGGGGGGG+GGG + tig0020769:2306-2325 Msa1385670:intergenic 85.0%
! AGACGGGGGGGGGGGGGGGG+GGG + tig0020769:2305-2324 Msa1385670:intergenic 90.0%
! ACGGGGGGGGGGGGGGGGGG+GGG + tig0020769:2303-2322 Msa1385670:intergenic 95.0%
! GACGGGGGGGGGGGGGGGGG+GGG + tig0020769:2304-2323 Msa1385670:intergenic 95.0%
Chromosome Type Strat End Strand Name
tig0020769 gene 178 2904 178 ID=Msa1385670;Name=Msa1385670
tig0020769 mRNA 178 2904 178 ID=Msa1385670-mRNA-1;Parent=Msa1385670;Name=Msa1385670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=265|1|1|1|0.5|0.66|3|342|211
tig0020769 exon 178 729 178 ID=Msa1385670-mRNA-1:exon:9709;Parent=Msa1385670-mRNA-1
tig0020769 exon 1449 2017 1449 ID=Msa1385670-mRNA-1:exon:9708;Parent=Msa1385670-mRNA-1
tig0020769 exon 2783 2904 2783 ID=Msa1385670-mRNA-1:exon:9707;Parent=Msa1385670-mRNA-1
tig0020769 five_prime_UTR 2783 2904 2783 ID=Msa1385670-mRNA-1:five_prime_utr;Parent=Msa1385670-mRNA-1
tig0020769 five_prime_UTR 1875 2017 1875 ID=Msa1385670-mRNA-1:five_prime_utr;Parent=Msa1385670-mRNA-1
tig0020769 CDS 1449 1874 1449 ID=Msa1385670-mRNA-1:cds;Parent=Msa1385670-mRNA-1
tig0020769 CDS 520 729 520 ID=Msa1385670-mRNA-1:cds;Parent=Msa1385670-mRNA-1
tig0020769 three_prime_UTR 178 519 178 ID=Msa1385670-mRNA-1:three_prime_utr;Parent=Msa1385670-mRNA-1
Gene Sequence

>Msa1385670

ATGACTCAAGATTCTTCTGGAGTGGACCAAATCACCTCAATAGTTCCTGTAACATCGGTTATGAGAACAATTGATGAACCCTACATCGGCCAGGAGTTTGTATCCGAAGCTGAAGCACATGCATTTTATAATTCATATGCTACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGATCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTAGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAAGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGAGTGGACACGACAGAGTTCGAGAACTAACTCAACAGTTGGCTATAGAGAAAAAGCGAGCTGAAACCTATAAAAGGAACCTTGACTTGTTATATGAGTACATCGAGGAGCATAATGAAGCTGTTTCAAAGAAGATACAGCACATAGTAGAGAGTGTGAAGGAGATGGAAGCTAAAGAACAAGAGGGTCAGTTTCAATTGGCTGTTATCTAG

Protein sequence

>Msa1385670

MTQDSSGVDQITSIVPVTSVMRTIDEPYIGQEFVSEAEAHAFYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELTQQLAIEKKRAETYKRNLDLLYEYIEEHNEAVSKKIQHIVESVKEMEAKEQEGQFQLAVI*