AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417990 MtrunA17_Chr3g0115581 98.680 303 4 0 16 318 43 345 0.0 622
Msa0417990 MtrunA17_Chr8g0382611 79.842 253 51 0 65 317 66 318 7.97e-157 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417990 AT1G22170.2 76.797 306 70 1 11 316 23 327 1.19e-177 494
Msa0417990 AT1G22170.1 76.797 306 70 1 11 316 23 327 1.19e-177 494
Msa0417990 AT1G78050.1 79.715 281 54 1 38 315 47 327 7.74e-172 480

Find 87 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTAAAGCTAGGTTATTT+TGG 0.158631 3_2:+65531864 Msa0417990:three_prime_UTR
ATTTATCATACTTGATTTCT+TGG 0.211753 3_2:-65529147 None:intergenic
ACGACTCACCGTGTCGAATA+AGG 0.265042 3_2:-65529353 None:intergenic
CTACCTTCTTACGGCGGTGC+TGG 0.280926 3_2:-65529542 None:intergenic
ACCTACTTGGTCTCTGAAAT+AGG 0.318239 3_2:-65530184 None:intergenic
CAAGAAACAGCAGACAGATA+TGG 0.338348 3_2:+65530072 Msa0417990:CDS
GTATGACAGTATTTCCAAAT+TGG 0.353070 3_2:-65532051 None:intergenic
TCAAAGAAGGAAGATTCATT+AGG 0.358232 3_2:+65530732 Msa0417990:CDS
TTGCAATCTCATTCTCATCT+TGG 0.370490 3_2:+65528918 Msa0417990:CDS
ATTGAACCCCAACTTCTATC+TGG 0.372989 3_2:+65530500 Msa0417990:CDS
GAAGTATGTCACCATGCTAT+TGG 0.383236 3_2:+65528891 None:intergenic
GATGTAAATATGAGATCAAC+TGG 0.389772 3_2:-65529477 None:intergenic
TAAAATGCATACCTTGGTAT+AGG 0.393283 3_2:-65530795 None:intergenic
TACAGCGTTTGGCTCTTTAC+AGG 0.396467 3_2:+65531611 Msa0417990:intron
AACCAAAATAACCTAGCTTT+AGG 0.399557 3_2:-65531866 None:intergenic
TCCTCCCAATGGTGAAAGTC+TGG 0.399875 3_2:+65530137 Msa0417990:CDS
CATTCTTTCCAGATAGAAGT+TGG 0.400888 3_2:-65530508 None:intergenic
TTTGTCGAGATACATGATAA+TGG 0.419771 3_2:-65530564 None:intergenic
TGATTTCTTGGAAGTGTCAT+TGG 0.426824 3_2:-65529135 None:intergenic
CCCATAAAACCAACTGAAGC+TGG 0.429711 3_2:+65530764 Msa0417990:CDS
ATTCTTTCCAGATAGAAGTT+GGG 0.435809 3_2:-65530507 None:intergenic
CAACAACTGACGTCTGTGAA+TGG 0.445999 3_2:-65529082 None:intergenic
AGTTGCCAAGCTGCTATGAC+TGG 0.450681 3_2:-65529907 None:intergenic
ATTAGTTTAGAACTGTCAAC+TGG 0.450749 3_2:+65530689 Msa0417990:CDS
TTTCAGGTATGGAGAACTAC+AGG 0.452952 3_2:+65530038 Msa0417990:intron
CTCTCGTTGTGCATAACAAT+AGG 0.456310 3_2:-65529826 None:intergenic
AAGAAACAGCAGACAGATAT+GGG 0.456650 3_2:+65530073 Msa0417990:CDS
TGCAGTAATGGCTTGTCAAA+GGG 0.459448 3_2:+65529005 Msa0417990:intron
TCATTCTCGCTACCTTCTTA+CGG 0.461824 3_2:-65529551 None:intergenic
CTTACGGCGGTGCTGGGTCA+TGG 0.466672 3_2:-65529535 None:intergenic
TACCTTCTTACGGCGGTGCT+GGG 0.479212 3_2:-65529541 None:intergenic
TCTTTGAAAATGTAAAGCAT+TGG 0.479538 3_2:-65530716 None:intergenic
GGCTCTTTACAGGCAGAAGT+TGG 0.481694 3_2:+65531621 Msa0417990:CDS
AACAACTGACGTCTGTGAAT+GGG 0.484469 3_2:-65529081 None:intergenic
ATTTCCAGACTTTCACCATT+GGG 0.485719 3_2:-65530141 None:intergenic
CATAGCTTCGGCGCCACTCA+TGG 0.486599 3_2:-65530107 None:intergenic
ATAGATGAGGCAATTGAAGC+TGG 0.487774 3_2:+65529435 Msa0417990:CDS
TTCGACACGGTGAGTCGTTG+TGG 0.492540 3_2:+65529358 Msa0417990:CDS
CATTTCCAGACTTTCACCAT+TGG 0.497995 3_2:-65530142 None:intergenic
ACAGACGTCAGTTGTTGATC+CGG 0.498795 3_2:+65529088 Msa0417990:CDS
TCTGTGAAGCTTCTGATCAA+TGG 0.499485 3_2:-65531776 None:intergenic
AAGGGAATAAGTACCCGCTT+TGG 0.502585 3_2:+65529023 Msa0417990:CDS
TTGTTCTCAGTATTACTGCT+AGG 0.504027 3_2:+65531817 Msa0417990:three_prime_UTR
AATGAGAAGAATTTGTTCAC+AGG 0.510239 3_2:+65529381 Msa0417990:CDS
CTGCAGTAATGGCTTGTCAA+AGG 0.514800 3_2:+65529004 Msa0417990:intron
TTCTTTCCAGATAGAAGTTG+GGG 0.521049 3_2:-65530506 None:intergenic
AAGAAGGAAGATTCATTAGG+AGG 0.521386 3_2:+65530735 Msa0417990:CDS
AAGGAAGATTCATTAGGAGG+GGG 0.527349 3_2:+65530738 Msa0417990:CDS
GTGCTGGGTCATGGCAAGCA+TGG 0.530804 3_2:-65529526 None:intergenic
GAATTACAATACAATTCCTC+TGG 0.533183 3_2:-65529046 None:intergenic
GAGGAGGTATGTCATAGCTT+CGG 0.535709 3_2:-65530119 None:intergenic
GACCCAGCACCGCCGTAAGA+AGG 0.536334 3_2:+65529539 Msa0417990:CDS
TACAATTCCTCTGGCCAAAG+CGG 0.536865 3_2:-65529037 None:intergenic
TACTGTAATACTTTCAGTTG+AGG 0.540444 3_2:+65532007 Msa0417990:three_prime_UTR
TTAGCACATATCCTAAAGCT+AGG 0.540861 3_2:+65531855 Msa0417990:three_prime_UTR
ACAATTCCTCTGGCCAAAGC+GGG 0.542305 3_2:-65529036 None:intergenic
TCTATACCCTTCTTGCTAAG+TGG 0.548267 3_2:-65529417 None:intergenic
AGAAGGAAGATTCATTAGGA+GGG 0.551932 3_2:+65530736 Msa0417990:CDS
AGACTTTCACCATTGGGAGG+AGG 0.552095 3_2:-65530135 None:intergenic
AAGCTTCACAGATGAGTCAC+TGG 0.556436 3_2:+65531787 Msa0417990:three_prime_UTR
TCTCGACAAATTAACTTCCC+AGG 0.565688 3_2:+65530577 Msa0417990:CDS
GCATAAACTCCAGCTTCAGT+TGG 0.565994 3_2:-65530773 None:intergenic
GAAGGAAGATTCATTAGGAG+GGG 0.570970 3_2:+65530737 Msa0417990:CDS
TGTTCATGAACTTCAAAATG+TGG 0.585106 3_2:+65531979 Msa0417990:three_prime_UTR
TGATGTACCACTTAGCAAGA+AGG 0.585970 3_2:+65529410 Msa0417990:CDS
GAATAGCCCAATCACCTCCT+GGG 0.586449 3_2:-65530594 None:intergenic
CCATTCCAGTCATAGCAGCT+TGG 0.588646 3_2:+65529902 Msa0417990:CDS
AGAGTGAACAAGCAAAGGCA+TGG 0.594259 3_2:+65529845 Msa0417990:CDS
TAAGTACCCGCTTTGGCCAG+AGG 0.595270 3_2:+65529030 Msa0417990:CDS
GATGTACCACTTAGCAAGAA+GGG 0.602199 3_2:+65529411 Msa0417990:CDS
TCCAGACTTTCACCATTGGG+AGG 0.603226 3_2:-65530138 None:intergenic
CCAAGCTGCTATGACTGGAA+TGG 0.606063 3_2:-65529902 None:intergenic
CAACGAGAGTGAACAAGCAA+AGG 0.606715 3_2:+65529840 Msa0417990:CDS
TTCACAGATGAGTCACTGGT+GGG 0.618785 3_2:+65531791 Msa0417990:three_prime_UTR
CTTCACAGATGAGTCACTGG+TGG 0.623297 3_2:+65531790 Msa0417990:three_prime_UTR
ATGTTATGATTGCCGCACAC+GGG 0.631044 3_2:+65530528 Msa0417990:CDS
GGAAAGAACAAGTCCATGAG+TGG 0.633002 3_2:+65530094 Msa0417990:CDS
AATGTTATGATTGCCGCACA+CGG 0.634751 3_2:+65530527 Msa0417990:CDS
TAGCAAGAAGGGTATAGATG+AGG 0.640367 3_2:+65529422 Msa0417990:CDS
TCTCAATGAATTCCCGTGTG+CGG 0.651372 3_2:-65530540 None:intergenic
TATGACATACCTCCTCCCAA+TGG 0.657183 3_2:+65530126 Msa0417990:CDS
TTCAGGTATGGAGAACTACA+GGG 0.659499 3_2:+65530039 Msa0417990:intron
GCTTTGATCCTTATTCGACA+CGG 0.660091 3_2:+65529345 Msa0417990:CDS
ATTGCAAAGAGCCAATAGCA+TGG 0.664561 3_2:-65528902 None:intergenic
TTCTCGCTACCTTCTTACGG+CGG 0.686843 3_2:-65529548 None:intergenic
TGGAGTTTATGCCTATACCA+AGG 0.695146 3_2:+65530784 Msa0417990:CDS
CGACAAATTAACTTCCCAGG+AGG 0.718042 3_2:+65530580 Msa0417990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATTAATATAAATCTTAA+AGG - chr3_2:65531125-65531144 None:intergenic 10.0%
!! AAAAAATGTGAACTTATAAT+AGG + chr3_2:65530235-65530254 Msa0417990:intron 15.0%
!! CTAAAAAAATCATCTTAAAT+GGG - chr3_2:65530840-65530859 None:intergenic 15.0%
!!! AGAAAGTTTTGATTTAAAAA+TGG + chr3_2:65530867-65530886 Msa0417990:intron 15.0%
!!! TTCTAAAAATAATATGGTTT+AGG + chr3_2:65531652-65531671 Msa0417990:exon 15.0%
!! ATTTATCATACTTGATTTCT+TGG - chr3_2:65529150-65529169 None:intergenic 20.0%
!! TTAGAGAATATTAGTAAGTA+TGG + chr3_2:65529645-65529664 Msa0417990:intron 20.0%
!!! TATAACAAAGACTAATTTTC+TGG - chr3_2:65529740-65529759 None:intergenic 20.0%
!! TTCATAATTATTATCCTTTC+AGG + chr3_2:65530022-65530041 Msa0417990:intron 20.0%
!!! TATACATATTGTAACTTGTA+AGG + chr3_2:65530401-65530420 Msa0417990:intron 20.0%
!! CCTAAAAAAATCATCTTAAA+TGG - chr3_2:65530841-65530860 None:intergenic 20.0%
!!! CCATTTAAGATGATTTTTTT+AGG + chr3_2:65530838-65530857 Msa0417990:intron 20.0%
!!! GAGATGTTCTAAAAATAATA+TGG + chr3_2:65531646-65531665 Msa0417990:exon 20.0%
!!! ATATGCTATATTTTGATTCT+AGG + chr3_2:65531720-65531739 Msa0417990:intron 20.0%
!!! TATGCTATATTTTGATTCTA+GGG + chr3_2:65531721-65531740 Msa0417990:intron 20.0%
! AGTTGAAATTGTCATATGAT+TGG + chr3_2:65529275-65529294 Msa0417990:intron 25.0%
! AAGTTTCAAAAACTAAGAAC+AGG - chr3_2:65529959-65529978 None:intergenic 25.0%
!! AATTATTATCCTTTCAGGTA+TGG + chr3_2:65530027-65530046 Msa0417990:intron 25.0%
!!! TCATTGTTAAGTGTTTTTTG+AGG + chr3_2:65530303-65530322 Msa0417990:intron 25.0%
! ATTCATTTACTACATTTGTC+TGG - chr3_2:65530353-65530372 None:intergenic 25.0%
!!! AACTTGTAAGGTCAATTTTT+TGG + chr3_2:65530413-65530432 Msa0417990:intron 25.0%
! ACTAATAACCTGTCAAAAAT+CGG - chr3_2:65530675-65530694 None:intergenic 25.0%
!! TCTTTGAAAATGTAAAGCAT+TGG - chr3_2:65530719-65530738 None:intergenic 25.0%
!! ATGCTTTACATTTTCAAAGA+AGG + chr3_2:65530719-65530738 Msa0417990:CDS 25.0%
! AAAAATCATCTTAAATGGGA+CGG - chr3_2:65530836-65530855 None:intergenic 25.0%
! AAAAATGGATATTGTTTGTC+CGG + chr3_2:65530882-65530901 Msa0417990:intron 25.0%
!! TCTATGTTTTATATTGCTAG+TGG - chr3_2:65530931-65530950 None:intergenic 25.0%
! TTGAATTTCATTCATGATTG+AGG + chr3_2:65531141-65531160 Msa0417990:intron 25.0%
! AATTCTACCAGAAAGAAAAA+GGG - chr3_2:65531242-65531261 None:intergenic 25.0%
! ATTAGGACTAGATTTATCTA+AGG - chr3_2:65531280-65531299 None:intergenic 25.0%
! AGGTATTACAACTTTCTATT+AGG - chr3_2:65531297-65531316 None:intergenic 25.0%
!!! ATTTTGATCGAGAAAATCAA+CGG - chr3_2:65531324-65531343 None:intergenic 25.0%
! TAATATGGTTTAGGTAAACA+TGG + chr3_2:65531661-65531680 Msa0417990:intron 25.0%
! AATATGGTTTAGGTAAACAT+GGG + chr3_2:65531662-65531681 Msa0417990:intron 25.0%
! CATATTAATAGAGAACGAAA+AGG - chr3_2:65531705-65531724 None:intergenic 25.0%
!!! ATAGTTTTGAACATGTGTAA+TGG + chr3_2:65531897-65531916 Msa0417990:three_prime_UTR 25.0%
! AGATAAATGTCCTAAAAAGT+TGG - chr3_2:65531934-65531953 None:intergenic 25.0%
! AAGGATTTTATCTGCAGTAA+TGG + chr3_2:65528993-65529012 Msa0417990:intron 30.0%
GAATTACAATACAATTCCTC+TGG - chr3_2:65529049-65529068 None:intergenic 30.0%
GCAACCAACAAAAATATACT+CGG - chr3_2:65529209-65529228 None:intergenic 30.0%
! AATGAGAAGAATTTGTTCAC+AGG + chr3_2:65529381-65529400 Msa0417990:CDS 30.0%
GATGTAAATATGAGATCAAC+TGG - chr3_2:65529480-65529499 None:intergenic 30.0%
AAACAAAATTTCCACCTACT+TGG - chr3_2:65530200-65530219 None:intergenic 30.0%
TTAACAATGAAGTTCAACCA+GGG - chr3_2:65530293-65530312 None:intergenic 30.0%
!!! GTAAGGTCAATTTTTTGGTA+TGG + chr3_2:65530418-65530437 Msa0417990:intron 30.0%
TGGTTGAAGTTATCTTCATA+CGG + chr3_2:65530438-65530457 Msa0417990:intron 30.0%
ATCTGCAATATTGGTATCAA+TGG - chr3_2:65530482-65530501 None:intergenic 30.0%
ATTCTTTCCAGATAGAAGTT+GGG - chr3_2:65530510-65530529 None:intergenic 30.0%
TTTGTCGAGATACATGATAA+TGG - chr3_2:65530567-65530586 None:intergenic 30.0%
TAATAACCTGTCAAAAATCG+GGG - chr3_2:65530673-65530692 None:intergenic 30.0%
CTAATAACCTGTCAAAAATC+GGG - chr3_2:65530674-65530693 None:intergenic 30.0%
! ATTAGTTTAGAACTGTCAAC+TGG + chr3_2:65530689-65530708 Msa0417990:CDS 30.0%
TCAAAGAAGGAAGATTCATT+AGG + chr3_2:65530732-65530751 Msa0417990:CDS 30.0%
TAAAATGCATACCTTGGTAT+AGG - chr3_2:65530798-65530817 None:intergenic 30.0%
TTAAATGGGACGGAATATAA+AGG - chr3_2:65530826-65530845 None:intergenic 30.0%
ACTTCTTGTAATCAAGTACT+AGG + chr3_2:65531063-65531082 Msa0417990:intron 30.0%
TAAGCAAACATGTCAAACTA+AGG - chr3_2:65531197-65531216 None:intergenic 30.0%
! TTCTTATCCCTTTTTCTTTC+TGG + chr3_2:65531232-65531251 Msa0417990:intron 30.0%
CAATTCTACCAGAAAGAAAA+AGG - chr3_2:65531243-65531262 None:intergenic 30.0%
! TTTTGATCGAGAAAATCAAC+GGG - chr3_2:65531323-65531342 None:intergenic 30.0%
CTCGATCAAAATATTTCTCT+TGG + chr3_2:65531332-65531351 Msa0417990:intron 30.0%
!!! AATGACTGACACTTATTTTG+AGG - chr3_2:65531428-65531447 None:intergenic 30.0%
! ATCCTAAAGCTAGGTTATTT+TGG + chr3_2:65531864-65531883 Msa0417990:three_prime_UTR 30.0%
! AACCAAAATAACCTAGCTTT+AGG - chr3_2:65531869-65531888 None:intergenic 30.0%
!!! TTTTGAAGTTCATGAACAAC+AGG - chr3_2:65531977-65531996 None:intergenic 30.0%
TGTTCATGAACTTCAAAATG+TGG + chr3_2:65531979-65531998 Msa0417990:three_prime_UTR 30.0%
TACTGTAATACTTTCAGTTG+AGG + chr3_2:65532007-65532026 Msa0417990:three_prime_UTR 30.0%
GTATGACAGTATTTCCAAAT+TGG - chr3_2:65532054-65532073 None:intergenic 30.0%
TTGCAATCTCATTCTCATCT+TGG + chr3_2:65528918-65528937 Msa0417990:CDS 35.0%
CATCACCAAAATATCAGAAG+CGG + chr3_2:65528951-65528970 Msa0417990:intron 35.0%
! ATACACCGCTTCTGATATTT+TGG - chr3_2:65528959-65528978 None:intergenic 35.0%
ATATCAGAAGCGGTGTATTA+AGG + chr3_2:65528961-65528980 Msa0417990:intron 35.0%
!!! ATTGGTGTTGCTTTTTGAAG+GGG - chr3_2:65529120-65529139 None:intergenic 35.0%
!!! CATTGGTGTTGCTTTTTGAA+GGG - chr3_2:65529121-65529140 None:intergenic 35.0%
!!! TCATTGGTGTTGCTTTTTGA+AGG - chr3_2:65529122-65529141 None:intergenic 35.0%
!! TGATTTCTTGGAAGTGTCAT+TGG - chr3_2:65529138-65529157 None:intergenic 35.0%
!! TGTGCCGAGTATATTTTTGT+TGG + chr3_2:65529202-65529221 Msa0417990:intron 35.0%
AAGTTGAATCATCGAGTGTT+AGG + chr3_2:65529235-65529254 Msa0417990:intron 35.0%
! TTTGAAACTTCTCCTCTACA+AGG + chr3_2:65529969-65529988 Msa0417990:intron 35.0%
AAGAAACAGCAGACAGATAT+GGG + chr3_2:65530073-65530092 Msa0417990:CDS 35.0%
ATTTCCAGACTTTCACCATT+GGG - chr3_2:65530144-65530163 None:intergenic 35.0%
CTTAACAATGAAGTTCAACC+AGG - chr3_2:65530294-65530313 None:intergenic 35.0%
TTCTTTCCAGATAGAAGTTG+GGG - chr3_2:65530509-65530528 None:intergenic 35.0%
CATTCTTTCCAGATAGAAGT+TGG - chr3_2:65530511-65530530 None:intergenic 35.0%
! ATTTTTCCCCGATTTTTGAC+AGG + chr3_2:65530664-65530683 Msa0417990:intron 35.0%
AAGAAGGAAGATTCATTAGG+AGG + chr3_2:65530735-65530754 Msa0417990:CDS 35.0%
AGAAGGAAGATTCATTAGGA+GGG + chr3_2:65530736-65530755 Msa0417990:CDS 35.0%
GTCGTATAAAATGCATACCT+TGG - chr3_2:65530804-65530823 None:intergenic 35.0%
!! CATAGAACGTCAAAAGTGTT+TGG + chr3_2:65530945-65530964 Msa0417990:intron 35.0%
! TTCTTTCTGGTAGAATTGCA+AGG + chr3_2:65531245-65531264 Msa0417990:intron 35.0%
!! TGGCTTTCTAAGATGTTAGT+TGG + chr3_2:65531352-65531371 Msa0417990:intron 35.0%
AACCAAGTAAAGTCGTTAGT+GGG - chr3_2:65531592-65531611 None:intergenic 35.0%
TAACCAAGTAAAGTCGTTAG+TGG - chr3_2:65531593-65531612 None:intergenic 35.0%
TTGTTCTCAGTATTACTGCT+AGG + chr3_2:65531817-65531836 Msa0417990:three_prime_UTR 35.0%
TTAGCACATATCCTAAAGCT+AGG + chr3_2:65531855-65531874 Msa0417990:three_prime_UTR 35.0%
GTAAAAAACGAGTGCCAATT+TGG + chr3_2:65532037-65532056 Msa0417990:three_prime_UTR 35.0%
ATTGCAAAGAGCCAATAGCA+TGG - chr3_2:65528905-65528924 None:intergenic 40.0%
TGTATTAAGGTTGGCGACAA+AGG + chr3_2:65528974-65528993 Msa0417990:intron 40.0%
! TGCAGTAATGGCTTGTCAAA+GGG + chr3_2:65529005-65529024 Msa0417990:intron 40.0%
AACAACTGACGTCTGTGAAT+GGG - chr3_2:65529084-65529103 None:intergenic 40.0%
TGAATCATCGAGTGTTAGGT+TGG + chr3_2:65529239-65529258 Msa0417990:intron 40.0%
GCTTTGATCCTTATTCGACA+CGG + chr3_2:65529345-65529364 Msa0417990:CDS 40.0%
TGATGTACCACTTAGCAAGA+AGG + chr3_2:65529410-65529429 Msa0417990:CDS 40.0%
GATGTACCACTTAGCAAGAA+GGG + chr3_2:65529411-65529430 Msa0417990:CDS 40.0%
TCTATACCCTTCTTGCTAAG+TGG - chr3_2:65529420-65529439 None:intergenic 40.0%
! TAGCAAGAAGGGTATAGATG+AGG + chr3_2:65529422-65529441 Msa0417990:CDS 40.0%
ATAGATGAGGCAATTGAAGC+TGG + chr3_2:65529435-65529454 Msa0417990:CDS 40.0%
TCATTCTCGCTACCTTCTTA+CGG - chr3_2:65529554-65529573 None:intergenic 40.0%
!! TTAACCATTAACTTGCCTGC+AGG + chr3_2:65529801-65529820 Msa0417990:intron 40.0%
CTCTCGTTGTGCATAACAAT+AGG - chr3_2:65529829-65529848 None:intergenic 40.0%
TGTAGTTCTCCATACCTGAA+AGG - chr3_2:65530039-65530058 None:intergenic 40.0%
! TTTCAGGTATGGAGAACTAC+AGG + chr3_2:65530038-65530057 Msa0417990:intron 40.0%
TTCAGGTATGGAGAACTACA+GGG + chr3_2:65530039-65530058 Msa0417990:intron 40.0%
CAAGAAACAGCAGACAGATA+TGG + chr3_2:65530072-65530091 Msa0417990:CDS 40.0%
CATTTCCAGACTTTCACCAT+TGG - chr3_2:65530145-65530164 None:intergenic 40.0%
!! ACCTACTTGGTCTCTGAAAT+AGG - chr3_2:65530187-65530206 None:intergenic 40.0%
TATTTCAGAGACCAAGTAGG+TGG + chr3_2:65530186-65530205 Msa0417990:intron 40.0%
AAGTTCAACCAGGGAAAATG+GGG - chr3_2:65530284-65530303 None:intergenic 40.0%
GAAGTTCAACCAGGGAAAAT+GGG - chr3_2:65530285-65530304 None:intergenic 40.0%
TGAAGTTCAACCAGGGAAAA+TGG - chr3_2:65530286-65530305 None:intergenic 40.0%
TGGGGTTCAATCTGCAATAT+TGG - chr3_2:65530491-65530510 None:intergenic 40.0%
ATTGAACCCCAACTTCTATC+TGG + chr3_2:65530500-65530519 Msa0417990:CDS 40.0%
AATGTTATGATTGCCGCACA+CGG + chr3_2:65530527-65530546 Msa0417990:CDS 40.0%
TCTCGACAAATTAACTTCCC+AGG + chr3_2:65530577-65530596 Msa0417990:CDS 40.0%
GAAGGAAGATTCATTAGGAG+GGG + chr3_2:65530737-65530756 Msa0417990:CDS 40.0%
AAGGAAGATTCATTAGGAGG+GGG + chr3_2:65530738-65530757 Msa0417990:CDS 40.0%
!!! CCAGCTTCAGTTGGTTTTAT+GGG - chr3_2:65530767-65530786 None:intergenic 40.0%
!!! TCCAGCTTCAGTTGGTTTTA+TGG - chr3_2:65530768-65530787 None:intergenic 40.0%
TGGAGTTTATGCCTATACCA+AGG + chr3_2:65530784-65530803 Msa0417990:CDS 40.0%
ATGGATATTGTTTGTCCGGA+AGG + chr3_2:65530886-65530905 Msa0417990:intron 40.0%
TGAGAGTCTAGATCGTATGT+TGG + chr3_2:65531094-65531113 Msa0417990:intron 40.0%
GTCTAGATCGTATGTTGGAA+AGG + chr3_2:65531099-65531118 Msa0417990:intron 40.0%
TAAGTGTCAGTCATTGACGT+CGG + chr3_2:65531433-65531452 Msa0417990:intron 40.0%
!! CTGATGCTCTAAAATGATGC+TGG + chr3_2:65531513-65531532 Msa0417990:intron 40.0%
CTTTACTTGGTTACAGCGTT+TGG + chr3_2:65531600-65531619 Msa0417990:intron 40.0%
TCTGTGAAGCTTCTGATCAA+TGG - chr3_2:65531779-65531798 None:intergenic 40.0%
! AGACCAGCTTCCAACTTTTT+AGG + chr3_2:65531921-65531940 Msa0417990:three_prime_UTR 40.0%
TGTCCTAAAAAGTTGGAAGC+TGG - chr3_2:65531927-65531946 None:intergenic 40.0%
CAGAAGCGGTGTATTAAGGT+TGG + chr3_2:65528965-65528984 Msa0417990:intron 45.0%
! CTGCAGTAATGGCTTGTCAA+AGG + chr3_2:65529004-65529023 Msa0417990:intron 45.0%
AAGGGAATAAGTACCCGCTT+TGG + chr3_2:65529023-65529042 Msa0417990:CDS 45.0%
TACAATTCCTCTGGCCAAAG+CGG - chr3_2:65529040-65529059 None:intergenic 45.0%
CAACAACTGACGTCTGTGAA+TGG - chr3_2:65529085-65529104 None:intergenic 45.0%
ACAGACGTCAGTTGTTGATC+CGG + chr3_2:65529088-65529107 Msa0417990:CDS 45.0%
!! CTTTTTGAAGGGGACAACAC+CGG - chr3_2:65529110-65529129 None:intergenic 45.0%
CAAAGCTGCTTCATCTGAGT+TGG - chr3_2:65529331-65529350 None:intergenic 45.0%
CAACGAGAGTGAACAAGCAA+AGG + chr3_2:65529840-65529859 Msa0417990:CDS 45.0%
AGAGTGAACAAGCAAAGGCA+TGG + chr3_2:65529845-65529864 Msa0417990:CDS 45.0%
GGAAAGAACAAGTCCATGAG+TGG + chr3_2:65530094-65530113 Msa0417990:CDS 45.0%
! GAGGAGGTATGTCATAGCTT+CGG - chr3_2:65530122-65530141 None:intergenic 45.0%
TATGACATACCTCCTCCCAA+TGG + chr3_2:65530126-65530145 Msa0417990:CDS 45.0%
GCCTATTTCAGAGACCAAGT+AGG + chr3_2:65530183-65530202 Msa0417990:intron 45.0%
ATGTTATGATTGCCGCACAC+GGG + chr3_2:65530528-65530547 Msa0417990:CDS 45.0%
TCTCAATGAATTCCCGTGTG+CGG - chr3_2:65530543-65530562 None:intergenic 45.0%
CGACAAATTAACTTCCCAGG+AGG + chr3_2:65530580-65530599 Msa0417990:CDS 45.0%
TTAACTTCCCAGGAGGTGAT+TGG + chr3_2:65530587-65530606 Msa0417990:intron 45.0%
TAACTTCCCAGGAGGTGATT+GGG + chr3_2:65530588-65530607 Msa0417990:intron 45.0%
CCCATAAAACCAACTGAAGC+TGG + chr3_2:65530764-65530783 Msa0417990:CDS 45.0%
GCATAAACTCCAGCTTCAGT+TGG - chr3_2:65530776-65530795 None:intergenic 45.0%
CTTCATGTCGCTATGTGCTA+TGG + chr3_2:65530984-65531003 Msa0417990:intron 45.0%
TCGAGAAAATCAACGGGTCA+AGG - chr3_2:65531317-65531336 None:intergenic 45.0%
TGCCCACTAACGACTTTACT+TGG + chr3_2:65531587-65531606 Msa0417990:intron 45.0%
!! TACAGCGTTTGGCTCTTTAC+AGG + chr3_2:65531611-65531630 Msa0417990:intron 45.0%
! TCTAGGGCTGTTTCACTTTC+AGG + chr3_2:65531737-65531756 Msa0417990:intron 45.0%
AAGCTTCACAGATGAGTCAC+TGG + chr3_2:65531787-65531806 Msa0417990:three_prime_UTR 45.0%
TTCACAGATGAGTCACTGGT+GGG + chr3_2:65531791-65531810 Msa0417990:three_prime_UTR 45.0%
ACAATTCCTCTGGCCAAAGC+GGG - chr3_2:65529039-65529058 None:intergenic 50.0%
ACGACTCACCGTGTCGAATA+AGG - chr3_2:65529356-65529375 None:intergenic 50.0%
TTCTCGCTACCTTCTTACGG+CGG - chr3_2:65529551-65529570 None:intergenic 50.0%
GCATAACAATAGGCACCTGC+AGG - chr3_2:65529819-65529838 None:intergenic 50.0%
CCAAGCTGCTATGACTGGAA+TGG - chr3_2:65529905-65529924 None:intergenic 50.0%
CCATTCCAGTCATAGCAGCT+TGG + chr3_2:65529902-65529921 Msa0417990:CDS 50.0%
AGTTGCCAAGCTGCTATGAC+TGG - chr3_2:65529910-65529929 None:intergenic 50.0%
TGCTACTCAGCACCTTGTAG+AGG - chr3_2:65529984-65530003 None:intergenic 50.0%
!! CTACAAGGTGCTGAGTAGCA+CGG + chr3_2:65529984-65530003 Msa0417990:intron 50.0%
AGACTTTCACCATTGGGAGG+AGG - chr3_2:65530138-65530157 None:intergenic 50.0%
TCCTCCCAATGGTGAAAGTC+TGG + chr3_2:65530137-65530156 Msa0417990:CDS 50.0%
TCCAGACTTTCACCATTGGG+AGG - chr3_2:65530141-65530160 None:intergenic 50.0%
TTCAACCAGGGAAAATGGGG+TGG - chr3_2:65530281-65530300 None:intergenic 50.0%
GAATAGCCCAATCACCTCCT+GGG - chr3_2:65530597-65530616 None:intergenic 50.0%
TGAATAGCCCAATCACCTCC+TGG - chr3_2:65530598-65530617 None:intergenic 50.0%
GGCTCTTTACAGGCAGAAGT+TGG + chr3_2:65531621-65531640 Msa0417990:CDS 50.0%
CTTCACAGATGAGTCACTGG+TGG + chr3_2:65531790-65531809 Msa0417990:three_prime_UTR 50.0%
TAAGTACCCGCTTTGGCCAG+AGG + chr3_2:65529030-65529049 Msa0417990:CDS 55.0%
TTCGACACGGTGAGTCGTTG+TGG + chr3_2:65529358-65529377 Msa0417990:CDS 55.0%
TACCTTCTTACGGCGGTGCT+GGG - chr3_2:65529544-65529563 None:intergenic 55.0%
GGCACCTGCAGGCAAGTTAA+TGG - chr3_2:65529808-65529827 None:intergenic 55.0%
GGGAAAATGGGGTGGAAGTG+CGG - chr3_2:65530273-65530292 None:intergenic 55.0%
! CACTTCCACCCCATTTTCCC+TGG + chr3_2:65530273-65530292 Msa0417990:intron 55.0%
GTTTGTCCGGAAGGTTGCAG+TGG + chr3_2:65530895-65530914 Msa0417990:intron 55.0%
! CAAGTGCCACTGCAACCTTC+CGG - chr3_2:65530904-65530923 None:intergenic 55.0%
GTGCTGGGTCATGGCAAGCA+TGG - chr3_2:65529529-65529548 None:intergenic 60.0%
CTACCTTCTTACGGCGGTGC+TGG - chr3_2:65529545-65529564 None:intergenic 60.0%
CATAGCTTCGGCGCCACTCA+TGG - chr3_2:65530110-65530129 None:intergenic 60.0%
! CTTACGGCGGTGCTGGGTCA+TGG - chr3_2:65529538-65529557 None:intergenic 65.0%
GACCCAGCACCGCCGTAAGA+AGG + chr3_2:65529539-65529558 Msa0417990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 65528896 65532115 65528896 ID=Msa0417990;Name=Msa0417990
chr3_2 mRNA 65528896 65532115 65528896 ID=Msa0417990-mRNA-1;Parent=Msa0417990;Name=Msa0417990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.87|0.77|1|0.87|0.77|9|373|318
chr3_2 exon 65528896 65528939 65528896 ID=Msa0417990-mRNA-1:exon:14780;Parent=Msa0417990-mRNA-1
chr3_2 exon 65529010 65529158 65529010 ID=Msa0417990-mRNA-1:exon:14781;Parent=Msa0417990-mRNA-1
chr3_2 exon 65529337 65529560 65529337 ID=Msa0417990-mRNA-1:exon:14782;Parent=Msa0417990-mRNA-1
chr3_2 exon 65529823 65529941 65529823 ID=Msa0417990-mRNA-1:exon:14783;Parent=Msa0417990-mRNA-1
chr3_2 exon 65530044 65530200 65530044 ID=Msa0417990-mRNA-1:exon:14784;Parent=Msa0417990-mRNA-1
chr3_2 exon 65530500 65530601 65530500 ID=Msa0417990-mRNA-1:exon:14785;Parent=Msa0417990-mRNA-1
chr3_2 exon 65530686 65530805 65530686 ID=Msa0417990-mRNA-1:exon:14786;Parent=Msa0417990-mRNA-1
chr3_2 exon 65531616 65531673 65531616 ID=Msa0417990-mRNA-1:exon:14787;Parent=Msa0417990-mRNA-1
chr3_2 exon 65531759 65532115 65531759 ID=Msa0417990-mRNA-1:exon:14788;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65528896 65528939 65528896 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65529010 65529158 65529010 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65529337 65529560 65529337 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65529823 65529941 65529823 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65530044 65530200 65530044 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65530500 65530601 65530500 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65530686 65530805 65530686 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 CDS 65531616 65531657 65531616 ID=Msa0417990-mRNA-1:cds;Parent=Msa0417990-mRNA-1
chr3_2 three_prime_UTR 65531658 65531673 65531658 ID=Msa0417990-mRNA-1:three_prime_utr;Parent=Msa0417990-mRNA-1
chr3_2 three_prime_UTR 65531759 65532115 65531759 ID=Msa0417990-mRNA-1:three_prime_utr;Parent=Msa0417990-mRNA-1
Gene Sequence

>Msa0417990

ATGTCACCATGCTATTGGCTCTTTGCAATCTCATTCTCATCTTGTAATGGCTTGTCAAAGGGAATAAGTACCCGCTTTGGCCAGAGGAATTGTATTGTAATTCGATCTTCAGCTTCCCATTCACAGACGTCAGTTGTTGATCCGGTGTTGTCCCCTTCAAAAAGCAACACCAATGACACTTCCAAGAAATCAAATGAAGCAGCTTTGATCCTTATTCGACACGGTGAGTCGTTGTGGAATGAGAAGAATTTGTTCACAGGTTGTGTTGATGTACCACTTAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGTAGCATTCCAGTTGATCTCATATTTACATCTGCTTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGCCGTAAGAAGGTGCCTATTGTTATGCACAACGAGAGTGAACAAGCAAAGGCATGGAGTCAAGTTTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGAGAACTACAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGCCGAAGCTATGACATACCTCCTCCCAATGGTGAAAGTCTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCCCAACTTCTATCTGGAAAGAATGTTATGATTGCCGCACACGGGAATTCATTGAGATCCATTATCATGTATCTCGACAAATTAACTTCCCAGGAGGTTATTAGTTTAGAACTGTCAACTGGAATTCCAATGCTTTACATTTTCAAAGAAGGAAGATTCATTAGGAGGGGGAGTCCCATAAAACCAACTGAAGCTGGAGTTTATGCCTATACCAAGCGTTTGGCTCTTTACAGGCAGAAGTTGGATGAGATGTTCTAA

Protein sequence

>Msa0417990

MSPCYWLFAISFSSCNGLSKGISTRFGQRNCIVIRSSASHSQTSVVDPVLSPSKSNTNDTSKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDLIFTSALIRAQMTAMLAMTQHRRKKVPIVMHNESEQAKAWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIKPTEAGVYAYTKRLALYRQKLDEMF*