AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0848780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848780 MtrunA17_Chr5g0422461 97.917 144 2 1 1 143 1 144 5.55e-97 291
Msa0848780 MtrunA17_Chr5g0422461 50.000 102 36 4 85 181 160 251 4.18e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848780 AT1G68830.1 84.524 84 13 0 60 143 48 131 9.06e-46 158
Msa0848780 AT1G68830.1 56.098 41 18 0 141 181 198 238 6.42e-11 60.8

Find 127 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCATTTA+AGG 0.110339 5_4:-34719520 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5_4:+34715519 Msa0848780:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5_4:+34715500 Msa0848780:CDS
AAGTCTTTGGCCAAGGAAAA+TGG 0.232514 5_4:-34715264 None:intergenic
CTCCTGAATATTGGCTTATA+TGG 0.234852 5_4:+34717108 Msa0848780:CDS
CCATATCATGAAGTTGGTTT+TGG 0.263305 5_4:-34715178 None:intergenic
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5_4:+34715520 Msa0848780:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 5_4:+34718892 Msa0848780:three_prime_UTR
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5_4:-34715277 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5_4:-34718777 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5_4:-34719448 None:intergenic
ATTGACGGTTGAATTGTATA+AGG 0.298216 5_4:-34718621 None:intergenic
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5_4:-34715213 None:intergenic
CAGGTCGAAACATTGATTCT+TGG 0.311234 5_4:+34717491 Msa0848780:three_prime_UTR
TACAACTTTCATTCCTCTCT+TGG 0.323203 5_4:-34719585 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 5_4:-34717182 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5_4:+34717820 Msa0848780:three_prime_UTR
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5_4:-34717824 None:intergenic
CGAAATCAATTATCTTGTTC+AGG 0.335610 5_4:+34719660 Msa0848780:three_prime_UTR
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5_4:-34719447 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5_4:+34718924 Msa0848780:three_prime_UTR
ACCATCACCGGGGCTGATAC+TGG 0.358890 5_4:-34717457 None:intergenic
CCAAAACCAACTTCATGATA+TGG 0.361676 5_4:+34715178 Msa0848780:exon
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5_4:+34717099 Msa0848780:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5_4:+34718072 Msa0848780:three_prime_UTR
AAATTTAAATAGAACTTTCT+CGG 0.365198 5_4:-34717398 None:intergenic
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5_4:+34718934 Msa0848780:three_prime_UTR
ACATTCAAAATAATTGATCT+TGG 0.382791 5_4:+34717764 Msa0848780:three_prime_UTR
CTCCATATAAGCCAATATTC+AGG 0.386303 5_4:-34717110 None:intergenic
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5_4:+34718730 Msa0848780:three_prime_UTR
CAACACCAACACCTACAAAA+AGG 0.400926 5_4:-34715394 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5_4:+34715203 Msa0848780:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 5_4:+34718721 Msa0848780:three_prime_UTR
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5_4:-34718826 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 5_4:+34718831 Msa0848780:three_prime_UTR
ACAAGATTTGCCAAAGGGAT+TGG 0.407482 5_4:+34717520 Msa0848780:three_prime_UTR
TGGTGGTTGTTCATTGTTTG+AGG 0.410407 5_4:-34715297 None:intergenic
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5_4:+34715542 Msa0848780:CDS
GTTGCACGTCAAAATATTAC+AGG 0.416786 5_4:-34719777 None:intergenic
CATCCTTACTTTGACAAAGA+AGG 0.421240 5_4:+34718823 Msa0848780:three_prime_UTR
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5_4:-34719584 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5_4:-34718062 None:intergenic
TGGACTTCCATGCACTGTTA+TGG 0.431565 5_4:+34715415 Msa0848780:CDS
TCTTATCTTTGGGCTACACC+TGG 0.433977 5_4:+34715530 Msa0848780:CDS
ATCACCACAAAAGCCATTCA+TGG 0.434279 5_4:+34715341 Msa0848780:CDS
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 5_4:+34718711 Msa0848780:three_prime_UTR
TGGCTTATATGGAGGTTTGA+AGG 0.443769 5_4:+34717119 Msa0848780:CDS
TGGTTATTTATGATCTCTAA+AGG 0.446721 5_4:+34717431 Msa0848780:three_prime_UTR
AGTCACACCTCTTTAATTGA+CGG 0.447260 5_4:-34718636 None:intergenic
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5_4:+34715482 Msa0848780:CDS
GGCTTATATGGAGGTTTGAA+GGG 0.452837 5_4:+34717120 Msa0848780:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5_4:+34718734 Msa0848780:three_prime_UTR
CTCAACTGGTATTGTGCATA+GGG 0.466971 5_4:+34717607 Msa0848780:three_prime_UTR
GCCAGTATCAGCCCCGGTGA+TGG 0.467618 5_4:+34717456 Msa0848780:three_prime_UTR
CTATTATCAGAGCGTAAGCC+AGG 0.468233 5_4:-34718598 None:intergenic
TTAGACGGTCTTCACTCAAC+TGG 0.479359 5_4:+34717593 Msa0848780:three_prime_UTR
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5_4:+34718945 Msa0848780:three_prime_UTR
GGATGCGTACTCTAAGTTCC+TGG 0.484595 5_4:-34718993 None:intergenic
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5_4:+34719559 Msa0848780:three_prime_UTR
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5_4:-34715314 None:intergenic
AATCCATTCAGCACCATGAA+TGG 0.498174 5_4:-34715354 None:intergenic
GGTGGTTGTTCATTGTTTGA+GGG 0.499043 5_4:-34715296 None:intergenic
CTCGATGTGGCGCTGAACTT+AGG 0.499449 5_4:+34718692 Msa0848780:three_prime_UTR
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5_4:+34719437 Msa0848780:intron
CTGAATATTGGCTTATATGG+AGG 0.508004 5_4:+34717111 Msa0848780:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 5_4:-34715500 None:intergenic
AAGCCATTCATGGTGCTGAA+TGG 0.509311 5_4:+34715351 Msa0848780:CDS
ACTCAACTGGTATTGTGCAT+AGG 0.510063 5_4:+34717606 Msa0848780:three_prime_UTR
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5_4:+34718235 Msa0848780:three_prime_UTR
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5_4:-34715201 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 5_4:+34715604 Msa0848780:CDS
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5_4:-34718083 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5_4:-34718014 None:intergenic
GAGGTACAAGATTTGCCAAA+GGG 0.534473 5_4:+34717515 Msa0848780:three_prime_UTR
ACATTCAAGCCACTAGACTT+AGG 0.534526 5_4:-34715470 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 5_4:+34718629 Msa0848780:three_prime_UTR
TAACAAACCTTTCTGAAAGT+AGG 0.543091 5_4:-34715611 None:intergenic
CTGTAGATATCAAATCTGTC+AGG 0.543319 5_4:-34718209 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 5_4:-34715317 None:intergenic
CAGTGGCCATATCATGAAGT+TGG 0.544516 5_4:-34715184 None:intergenic
TGATTCTAAGTCTTTGGCCA+AGG 0.549378 5_4:-34715271 None:intergenic
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5_4:+34719484 Msa0848780:three_prime_UTR
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5_4:+34718076 Msa0848780:three_prime_UTR
AGATTGATATGAGTTTGAAG+AGG 0.573556 5_4:+34715127 Msa0848780:five_prime_UTR
ATTTGATACTCACCATTTGG+AGG 0.574767 5_4:-34718247 None:intergenic
CCACACTCCATAACAGTGCA+TGG 0.576846 5_4:-34715422 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5_4:-34718044 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5_4:+34718215 Msa0848780:three_prime_UTR
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5_4:+34719441 Msa0848780:three_prime_UTR
ATTCACTGAAGCTCAACTCC+AGG 0.580949 5_4:+34718975 Msa0848780:three_prime_UTR
CGAAACATTGATTCTTGGTG+AGG 0.582143 5_4:+34717496 Msa0848780:three_prime_UTR
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5_4:+34718735 Msa0848780:three_prime_UTR
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5_4:+34719550 Msa0848780:three_prime_UTR
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5_4:+34718724 Msa0848780:three_prime_UTR
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5_4:+34719553 Msa0848780:three_prime_UTR
GTGATGAATCTTGCACTGCA+TGG 0.588583 5_4:-34715323 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5_4:+34715197 Msa0848780:CDS
GTGACTATGACTTGGTTGCA+TGG 0.590726 5_4:+34718653 Msa0848780:three_prime_UTR
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5_4:-34718054 None:intergenic
TGTTTCAGAAACATAGTGAA+GGG 0.598126 5_4:-34717338 None:intergenic
CATAAGCTGAATAATCCACT+TGG 0.599152 5_4:-34718923 None:intergenic
GCTTATATGGAGGTTTGAAG+GGG 0.600363 5_4:+34717121 Msa0848780:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5_4:-34717150 None:intergenic
AGCACTCTTCCTAAGTCTAG+TGG 0.608042 5_4:+34715461 Msa0848780:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5_4:+34718948 Msa0848780:three_prime_UTR
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5_4:+34717788 Msa0848780:three_prime_UTR
CAATGGTCCGATATAAAGCA+AGG 0.622058 5_4:+34718770 Msa0848780:three_prime_UTR
CCATGCACTGTTATGGAGTG+TGG 0.622158 5_4:+34715422 Msa0848780:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5_4:+34718776 Msa0848780:three_prime_UTR
TATCTATCATGCAAAATCTG+AGG 0.626573 5_4:+34718857 Msa0848780:three_prime_UTR
GTGTTTCAGAAACATAGTGA+AGG 0.631803 5_4:-34717339 None:intergenic
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5_4:-34718053 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5_4:+34718952 Msa0848780:three_prime_UTR
TTATCAGTCTTTCATCTGTG+AGG 0.640787 5_4:+34717292 Msa0848780:three_prime_UTR
TCAGAGAAAATAATGTTCTG+CGG 0.642515 5_4:-34717638 None:intergenic
AAGGTCGCCAGTATCAGCCC+CGG 0.643106 5_4:+34717450 Msa0848780:three_prime_UTR
TGAGGTACAAGATTTGCCAA+AGG 0.643878 5_4:+34717514 Msa0848780:three_prime_UTR
CAAAAGCAAGAACAACACCA+GGG 0.646990 5_4:-34715499 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5_4:+34719572 Msa0848780:three_prime_UTR
TTAGAGATCATAAATAACCA+AGG 0.663644 5_4:-34717428 None:intergenic
AAAGAGGTGTGACTATGACT+TGG 0.672074 5_4:+34718645 Msa0848780:three_prime_UTR
ATGAATCTTGCACTGCATGG+TGG 0.677136 5_4:-34715320 None:intergenic
AAAACTGTGGAGCCTCGATG+TGG 0.677269 5_4:+34718679 Msa0848780:three_prime_UTR
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 5_4:+34718697 Msa0848780:three_prime_UTR
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5_4:+34718949 Msa0848780:three_prime_UTR
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5_4:+34718908 Msa0848780:three_prime_UTR
CTAAGTTCAGCGCCACATCG+AGG 0.705406 5_4:-34718691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATATATTCTATTTAT+TGG + chr5_4:34716552-34716571 Msa0848780:intron 10.0%
!!! AAAAAAAAATTTTCAGTATT+AGG - chr5_4:34719017-34719036 None:intergenic 10.0%
!!! AAATAAACAAAATTTGATTT+TGG - chr5_4:34719248-34719267 None:intergenic 10.0%
!! AAAAAAAAATGATCAATAAA+AGG - chr5_4:34719402-34719421 None:intergenic 10.0%
!! AAAAATATTGAAAAGAAAAA+GGG - chr5_4:34719623-34719642 None:intergenic 10.0%
!!! GTAGTCTAAAATAAAAATAA+AGG - chr5_4:34715642-34715661 None:intergenic 15.0%
!!! ATTTAGTTTTTTTTCTATCA+AGG + chr5_4:34715851-34715870 Msa0848780:intron 15.0%
!! TCTGATACTATATTAAAATT+TGG + chr5_4:34716137-34716156 Msa0848780:intron 15.0%
!! AATAGAATAGAGATAATTTA+TGG + chr5_4:34716204-34716223 Msa0848780:intron 15.0%
!!! TTTTTATGAAATAGTATTTC+AGG + chr5_4:34716295-34716314 Msa0848780:intron 15.0%
!! TATTATTATTGTTATGGATA+TGG + chr5_4:34716450-34716469 Msa0848780:intron 15.0%
!!! GCTAAATTATTAAATGTTTT+TGG + chr5_4:34716577-34716596 Msa0848780:intron 15.0%
!! ATTATTTATAGATTCTCTTA+AGG + chr5_4:34716699-34716718 Msa0848780:intron 15.0%
!! AAATTTAAATAGAACTTTCT+CGG - chr5_4:34717401-34717420 None:intergenic 15.0%
!!! TTTAATTTCTATATTAACCA+TGG + chr5_4:34717727-34717746 Msa0848780:intron 15.0%
!! TGATTAATAGATACATTATT+AGG + chr5_4:34717909-34717928 Msa0848780:intron 15.0%
!!! TTTTGTAGTTAAAATGATTA+TGG + chr5_4:34718402-34718421 Msa0848780:intron 15.0%
!!! CAATTTTGATCATTTTATAT+AGG + chr5_4:34718570-34718589 Msa0848780:intron 15.0%
!!! TCAAATTTTGTTTATTTTAC+TGG + chr5_4:34719251-34719270 Msa0848780:intron 15.0%
!! AAAATATTGAAAAGAAAAAG+GGG - chr5_4:34719622-34719641 None:intergenic 15.0%
!! CAAAAATATTGAAAAGAAAA+AGG - chr5_4:34719624-34719643 None:intergenic 15.0%
!!! ATTTATGTAACATTTTTTGA+AGG + chr5_4:34719803-34719822 Msa0848780:three_prime_UTR 15.0%
!! CATCAAACACTTAATTTATT+AGG - chr5_4:34715696-34715715 None:intergenic 20.0%
!!! TTATTTTTACTAACTTACAG+AGG - chr5_4:34715942-34715961 None:intergenic 20.0%
!! AAATAATTTAGCGTCTATTT+AGG - chr5_4:34716078-34716097 None:intergenic 20.0%
!!! AATAATAATACCTTTGAAGA+GGG - chr5_4:34716440-34716459 None:intergenic 20.0%
!!! CAAAGGTATTATTATTGTTA+TGG + chr5_4:34716444-34716463 Msa0848780:intron 20.0%
!! CATAATATAATAACAAGACT+CGG - chr5_4:34716535-34716554 None:intergenic 20.0%
!!! TTATGACTTATGATACTTTT+TGG + chr5_4:34716813-34716832 Msa0848780:intron 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG + chr5_4:34717411-34717430 Msa0848780:three_prime_UTR 20.0%
!! ATAGAAATTAAAGCATAACT+TGG - chr5_4:34717719-34717738 None:intergenic 20.0%
!! ACATTCAAAATAATTGATCT+TGG + chr5_4:34717764-34717783 Msa0848780:three_prime_UTR 20.0%
!!! GTTTCATATATTTCTAATCA+TGG + chr5_4:34718477-34718496 Msa0848780:intron 20.0%
!!! ACTGAAAATTTTTTTTTAGC+TGG + chr5_4:34719020-34719039 Msa0848780:intron 20.0%
!! AAGGGTTATAAATATGTTTA+TGG - chr5_4:34719278-34719297 None:intergenic 20.0%
!!! TTTTTTTTTTTTTGCGTTGT+AGG + chr5_4:34719416-34719435 Msa0848780:intron 20.0%
!! CAAAAAATGTTACATAAATG+TGG - chr5_4:34719802-34719821 None:intergenic 20.0%
!!! AGGAAAATGGATTTTTTGTT+GGG - chr5_4:34715254-34715273 None:intergenic 25.0%
!!! AAGGAAAATGGATTTTTTGT+TGG - chr5_4:34715255-34715274 None:intergenic 25.0%
!! AACAAAAAATCCATTTTCCT+TGG + chr5_4:34715254-34715273 Msa0848780:CDS 25.0%
! ACAAACATATCAAAAAAACC+AGG - chr5_4:34715563-34715582 None:intergenic 25.0%
! TATAGTGTTTCGTAAAATAG+TGG + chr5_4:34715806-34715825 Msa0848780:intron 25.0%
! AGATAATTTATGGACCAAAT+AGG + chr5_4:34716214-34716233 Msa0848780:intron 25.0%
! AAATTTAGTGACGAAATTGA+AGG + chr5_4:34716246-34716265 Msa0848780:intron 25.0%
!! CAATAATAATACCTTTGAAG+AGG - chr5_4:34716441-34716460 None:intergenic 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG + chr5_4:34716947-34716966 Msa0848780:intron 25.0%
!! AGAGATTTTCCATATAATGT+TGG + chr5_4:34717173-34717192 Msa0848780:CDS 25.0%
! TTAGAGATCATAAATAACCA+AGG - chr5_4:34717431-34717450 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG + chr5_4:34717431-34717450 Msa0848780:three_prime_UTR 25.0%
!! ACATGTGCTATTATTAATGA+TGG - chr5_4:34718124-34718143 None:intergenic 25.0%
! ATTATTTGATACTCACCATT+TGG - chr5_4:34718253-34718272 None:intergenic 25.0%
! CATGGAAATCATTTAAACAA+TGG + chr5_4:34718495-34718514 Msa0848780:intron 25.0%
! AAATCATTTAAACAATGGCA+AGG + chr5_4:34718500-34718519 Msa0848780:intron 25.0%
! TACCAGTTTGATCATATAAT+TGG - chr5_4:34718536-34718555 None:intergenic 25.0%
!! TGTCATTTCTTTAGATACAT+AGG + chr5_4:34719063-34719082 Msa0848780:intron 25.0%
! TGATGACTATGACAATAAAA+GGG - chr5_4:34719296-34719315 None:intergenic 25.0%
! ATGATGACTATGACAATAAA+AGG - chr5_4:34719297-34719316 None:intergenic 25.0%
! TCAACTATGAAGGAAAAAAA+GGG - chr5_4:34719377-34719396 None:intergenic 25.0%
! AAAAACCTTAAATGAGAGTA+TGG + chr5_4:34719515-34719534 Msa0848780:three_prime_UTR 25.0%
!!! TGTAACATTTTTTGAAGGTA+TGG + chr5_4:34719808-34719827 Msa0848780:three_prime_UTR 25.0%
AGATTGATATGAGTTTGAAG+AGG + chr5_4:34715127-34715146 Msa0848780:five_prime_UTR 30.0%
!!! GGAAAATGGATTTTTTGTTG+GGG - chr5_4:34715253-34715272 None:intergenic 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG + chr5_4:34715579-34715598 Msa0848780:CDS 30.0%
! TAACAAACCTTTCTGAAAGT+AGG - chr5_4:34715614-34715633 None:intergenic 30.0%
! TATTAGGAGTGTAACAGATT+AGG - chr5_4:34715680-34715699 None:intergenic 30.0%
TGTTATAAGCTAGCTAATAG+CGG + chr5_4:34715763-34715782 Msa0848780:intron 30.0%
! TTTTTCTATCAAGGCTACAA+AGG + chr5_4:34715860-34715879 Msa0848780:intron 30.0%
AAGCTATAAGCTCAAATTTG+TGG + chr5_4:34716038-34716057 Msa0848780:intron 30.0%
! AATTTTCACTCTCTCCTATT+TGG - chr5_4:34716231-34716250 None:intergenic 30.0%
!! CTATTTGTTATTGCTGAGAA+CGG + chr5_4:34716326-34716345 Msa0848780:intron 30.0%
TTCTTAGATATGATGAAGTC+AGG + chr5_4:34716487-34716506 Msa0848780:intron 30.0%
AAAATGAAGAACCAACTTGT+TGG + chr5_4:34716735-34716754 Msa0848780:intron 30.0%
!! AATATGGTGCTGTAGAAATT+TGG + chr5_4:34716880-34716899 Msa0848780:intron 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG + chr5_4:34716952-34716971 Msa0848780:intron 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG + chr5_4:34716960-34716979 Msa0848780:intron 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG + chr5_4:34716961-34716980 Msa0848780:intron 30.0%
! TTGTCATTTACTATTTGCAG+AGG + chr5_4:34717072-34717091 Msa0848780:intron 30.0%
AAGAGACTACCAACATTATA+TGG - chr5_4:34717185-34717204 None:intergenic 30.0%
TGTTTCAGAAACATAGTGAA+GGG - chr5_4:34717341-34717360 None:intergenic 30.0%
! ATGTTTCGACCTGAAATTTT+TGG - chr5_4:34717484-34717503 None:intergenic 30.0%
TCAGAGAAAATAATGTTCTG+CGG - chr5_4:34717641-34717660 None:intergenic 30.0%
! CAGAACATTATTTTCTCTGA+AGG + chr5_4:34717641-34717660 Msa0848780:three_prime_UTR 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG + chr5_4:34717820-34717839 Msa0848780:three_prime_UTR 30.0%
! GTGCTATTATTAATGATGGA+TGG - chr5_4:34718120-34718139 None:intergenic 30.0%
AGATTTGATATCTACAGTAC+TGG + chr5_4:34718215-34718234 Msa0848780:three_prime_UTR 30.0%
AGCCAATTATATGATCAAAC+TGG + chr5_4:34718531-34718550 Msa0848780:intron 30.0%
! CATTTTATATAGGCATTTCC+TGG + chr5_4:34718580-34718599 Msa0848780:intron 30.0%
ATTGACGGTTGAATTGTATA+AGG - chr5_4:34718624-34718643 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG + chr5_4:34718629-34718648 Msa0848780:three_prime_UTR 30.0%
TATCTATCATGCAAAATCTG+AGG + chr5_4:34718857-34718876 Msa0848780:three_prime_UTR 30.0%
GTATCTAAAGAAATGACATG+TGG - chr5_4:34719061-34719080 None:intergenic 30.0%
AGTCTCTTGTGTAAAAAACA+GGG - chr5_4:34719118-34719137 None:intergenic 30.0%
TAAGTTGTTAAGTGACTGAA+AGG - chr5_4:34719164-34719183 None:intergenic 30.0%
! TTTTCATCCCTCCAAAAATA+GGG - chr5_4:34719204-34719223 None:intergenic 30.0%
! ATTTTCATCCCTCCAAAAAT+AGG - chr5_4:34719205-34719224 None:intergenic 30.0%
TCATAGTCATCATCTTCTTA+GGG + chr5_4:34719304-34719323 Msa0848780:intron 30.0%
GTCAACTATGAAGGAAAAAA+AGG - chr5_4:34719378-34719397 None:intergenic 30.0%
!! ATAAAAGGTGTCAACTATGA+AGG - chr5_4:34719387-34719406 None:intergenic 30.0%
CGAAATCAATTATCTTGTTC+AGG + chr5_4:34719660-34719679 Msa0848780:three_prime_UTR 30.0%
!!! TGAAGTTGGTTTTGGTTTGT+GGG - chr5_4:34715173-34715192 None:intergenic 35.0%
!!! ATGAAGTTGGTTTTGGTTTG+TGG - chr5_4:34715174-34715193 None:intergenic 35.0%
!! CCATATCATGAAGTTGGTTT+TGG - chr5_4:34715181-34715200 None:intergenic 35.0%
CCAAAACCAACTTCATGATA+TGG + chr5_4:34715178-34715197 Msa0848780:exon 35.0%
!!! GATTTTTTGTTGGGGTTGTA+GGG - chr5_4:34715245-34715264 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG - chr5_4:34715280-34715299 None:intergenic 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG + chr5_4:34715519-34715538 Msa0848780:CDS 35.0%
TGGTGCTTTGTCTTATCTTT+GGG + chr5_4:34715520-34715539 Msa0848780:CDS 35.0%
GTTTAGACCTACTTTCAGAA+AGG + chr5_4:34715604-34715623 Msa0848780:CDS 35.0%
ATAAGCTCATGAGAAAGTGA+CGG + chr5_4:34715965-34715984 Msa0848780:intron 35.0%
TTGACTAAAAAAGACCCGTT+TGG - chr5_4:34715994-34716013 None:intergenic 35.0%
! GCGTCTATTTAGGATCTATT+TGG - chr5_4:34716068-34716087 None:intergenic 35.0%
! GTTTATCAAGCCTGTTTTGT+CGG - chr5_4:34716180-34716199 None:intergenic 35.0%
TTGCTGAGAACGGTTTATTA+TGG + chr5_4:34716336-34716355 Msa0848780:intron 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG + chr5_4:34716356-34716375 Msa0848780:intron 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG + chr5_4:34716357-34716376 Msa0848780:intron 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG + chr5_4:34716367-34716386 Msa0848780:intron 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG + chr5_4:34716368-34716387 Msa0848780:intron 35.0%
CACATGATATACCAACAAGT+TGG - chr5_4:34716749-34716768 None:intergenic 35.0%
TGTGTTTGTGAGATTTCAGT+TGG + chr5_4:34716765-34716784 Msa0848780:intron 35.0%
!! TGAGATTTCAGTTGGTCTTT+GGG + chr5_4:34716773-34716792 Msa0848780:intron 35.0%
!!! TGATACTTTTTGGTTCTCAC+TGG + chr5_4:34716823-34716842 Msa0848780:intron 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG + chr5_4:34716936-34716955 Msa0848780:intron 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG + chr5_4:34716962-34716981 Msa0848780:intron 35.0%
GTATCACTGTCTTACTTGTT+TGG + chr5_4:34716984-34717003 Msa0848780:intron 35.0%
TACTTGTTTGGAGAAATCGA+AGG + chr5_4:34716996-34717015 Msa0848780:intron 35.0%
CAAAGAAGACTCCTGAATAT+TGG + chr5_4:34717099-34717118 Msa0848780:CDS 35.0%
!! CTCCTGAATATTGGCTTATA+TGG + chr5_4:34717108-34717127 Msa0848780:CDS 35.0%
CTCCATATAAGCCAATATTC+AGG - chr5_4:34717113-34717132 None:intergenic 35.0%
!! CTGAATATTGGCTTATATGG+AGG + chr5_4:34717111-34717130 Msa0848780:CDS 35.0%
TTATCAGTCTTTCATCTGTG+AGG + chr5_4:34717292-34717311 Msa0848780:three_prime_UTR 35.0%
GTGTTTCAGAAACATAGTGA+AGG - chr5_4:34717342-34717361 None:intergenic 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG - chr5_4:34717533-34717552 None:intergenic 35.0%
! CAACTTTTGTTCGCATTAGA+CGG + chr5_4:34717578-34717597 Msa0848780:three_prime_UTR 35.0%
TCTATATTAACCATGGTCTC+AGG + chr5_4:34717734-34717753 Msa0848780:intron 35.0%
CTATATTAACCATGGTCTCA+GGG + chr5_4:34717735-34717754 Msa0848780:intron 35.0%
GGATCCAAAAGAAACTCTTT+AGG - chr5_4:34717827-34717846 None:intergenic 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG + chr5_4:34717828-34717847 Msa0848780:three_prime_UTR 35.0%
TAAACACAAACTTCGATCAG+TGG - chr5_4:34717880-34717899 None:intergenic 35.0%
CTGTAGATATCAAATCTGTC+AGG - chr5_4:34718212-34718231 None:intergenic 35.0%
TGGTCTAATATTCCTCCAAA+TGG + chr5_4:34718235-34718254 Msa0848780:three_prime_UTR 35.0%
ATTTGATACTCACCATTTGG+AGG - chr5_4:34718250-34718269 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG - chr5_4:34718639-34718658 None:intergenic 35.0%
TTTGAGCTGTTGGATTTAGA+TGG + chr5_4:34718721-34718740 Msa0848780:three_prime_UTR 35.0%
CATCCTTACTTTGACAAAGA+AGG + chr5_4:34718823-34718842 Msa0848780:three_prime_UTR 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG - chr5_4:34718829-34718848 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG - chr5_4:34718926-34718945 None:intergenic 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG + chr5_4:34718924-34718943 Msa0848780:three_prime_UTR 35.0%
ATTCAGCTTATGGCAAAATC+AGG + chr5_4:34718934-34718953 Msa0848780:three_prime_UTR 35.0%
AAAATCAGGAACAGAAAAGG+AGG + chr5_4:34718948-34718967 Msa0848780:three_prime_UTR 35.0%
AAATCAGGAACAGAAAAGGA+GGG + chr5_4:34718949-34718968 Msa0848780:three_prime_UTR 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - chr5_4:34719113-34719132 None:intergenic 35.0%
CAGTCTCTTGTGTAAAAAAC+AGG - chr5_4:34719119-34719138 None:intergenic 35.0%
GTCATAGTCATCATCTTCTT+AGG + chr5_4:34719303-34719322 Msa0848780:intron 35.0%
CATAGTCATCATCTTCTTAG+GGG + chr5_4:34719305-34719324 Msa0848780:intron 35.0%
CTCATCCATACTCTCATTTA+AGG - chr5_4:34719523-34719542 None:intergenic 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG + chr5_4:34719547-34719566 Msa0848780:three_prime_UTR 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG + chr5_4:34719550-34719569 Msa0848780:three_prime_UTR 35.0%
ACAACTTTCATTCCTCTCTT+GGG - chr5_4:34719587-34719606 None:intergenic 35.0%
TACAACTTTCATTCCTCTCT+TGG - chr5_4:34719588-34719607 None:intergenic 35.0%
GTTGCACGTCAAAATATTAC+AGG - chr5_4:34719780-34719799 None:intergenic 35.0%
AATTCCTTTGGTTGCAACAG+TGG - chr5_4:34715204-34715223 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG + chr5_4:34715203-34715222 Msa0848780:CDS 40.0%
CTTTGTGACTCCAATTCCTT+TGG - chr5_4:34715216-34715235 None:intergenic 40.0%
!!! GGATTTTTTGTTGGGGTTGT+AGG - chr5_4:34715246-34715265 None:intergenic 40.0%
AAGTCTTTGGCCAAGGAAAA+TGG - chr5_4:34715267-34715286 None:intergenic 40.0%
TGATTCTAAGTCTTTGGCCA+AGG - chr5_4:34715274-34715293 None:intergenic 40.0%
GGTGGTTGTTCATTGTTTGA+GGG - chr5_4:34715299-34715318 None:intergenic 40.0%
TGGTGGTTGTTCATTGTTTG+AGG - chr5_4:34715300-34715319 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG + chr5_4:34715341-34715360 Msa0848780:CDS 40.0%
AATCCATTCAGCACCATGAA+TGG - chr5_4:34715357-34715376 None:intergenic 40.0%
! TCAGCTCACAACCTTTTTGT+AGG + chr5_4:34715383-34715402 Msa0848780:CDS 40.0%
! CACAACCTTTTTGTAGGTGT+TGG + chr5_4:34715389-34715408 Msa0848780:CDS 40.0%
CAACACCAACACCTACAAAA+AGG - chr5_4:34715397-34715416 None:intergenic 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG + chr5_4:34715395-34715414 Msa0848780:CDS 40.0%
ACATTCAAGCCACTAGACTT+AGG - chr5_4:34715473-34715492 None:intergenic 40.0%
CAAAAGCAAGAACAACACCA+GGG - chr5_4:34715502-34715521 None:intergenic 40.0%
AGAAAGTGACGGTTACCAAA+CGG + chr5_4:34715976-34715995 Msa0848780:intron 40.0%
GTTTCAACCAATGGACACAT+GGG - chr5_4:34716112-34716131 None:intergenic 40.0%
TGAGAACGGTTTATTATGGC+AGG + chr5_4:34716340-34716359 Msa0848780:intron 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG + chr5_4:34716369-34716388 Msa0848780:intron 40.0%
CTTGGTTGTTAGTTGTTGGT+CGG - chr5_4:34716642-34716661 None:intergenic 40.0%
! AAGGCTTGGTTGTTAGTTGT+TGG - chr5_4:34716646-34716665 None:intergenic 40.0%
!! GTGAGATTTCAGTTGGTCTT+TGG + chr5_4:34716772-34716791 Msa0848780:intron 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG + chr5_4:34716827-34716846 Msa0848780:intron 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG + chr5_4:34716851-34716870 Msa0848780:intron 40.0%
TTGAAGAAGGCGACTGAATA+TGG + chr5_4:34716864-34716883 Msa0848780:intron 40.0%
TGGCTTATATGGAGGTTTGA+AGG + chr5_4:34717119-34717138 Msa0848780:CDS 40.0%
GGCTTATATGGAGGTTTGAA+GGG + chr5_4:34717120-34717139 Msa0848780:CDS 40.0%
GCTTATATGGAGGTTTGAAG+GGG + chr5_4:34717121-34717140 Msa0848780:CDS 40.0%
ACTCTGCAATAGATCAGCTA+AGG - chr5_4:34717153-34717172 None:intergenic 40.0%
!!! AAATTTTTGGCACCATCACC+GGG - chr5_4:34717471-34717490 None:intergenic 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG - chr5_4:34717472-34717491 None:intergenic 40.0%
! GTGATGGTGCCAAAAATTTC+AGG + chr5_4:34717472-34717491 Msa0848780:three_prime_UTR 40.0%
!! CAGGTCGAAACATTGATTCT+TGG + chr5_4:34717491-34717510 Msa0848780:three_prime_UTR 40.0%
!! CGAAACATTGATTCTTGGTG+AGG + chr5_4:34717496-34717515 Msa0848780:three_prime_UTR 40.0%
TGAGGTACAAGATTTGCCAA+AGG + chr5_4:34717514-34717533 Msa0848780:three_prime_UTR 40.0%
GAGGTACAAGATTTGCCAAA+GGG + chr5_4:34717515-34717534 Msa0848780:three_prime_UTR 40.0%
ACAAGATTTGCCAAAGGGAT+TGG + chr5_4:34717520-34717539 Msa0848780:three_prime_UTR 40.0%
ACTCAACTGGTATTGTGCAT+AGG + chr5_4:34717606-34717625 Msa0848780:three_prime_UTR 40.0%
CTCAACTGGTATTGTGCATA+GGG + chr5_4:34717607-34717626 Msa0848780:three_prime_UTR 40.0%
! AAAGTCATCTGAAGCTACCT+TGG - chr5_4:34717848-34717867 None:intergenic 40.0%
! GATCCTTGATGACTCAAGTT+AGG + chr5_4:34717931-34717950 Msa0848780:intron 40.0%
CTTCCTAACTTGAGTCATCA+AGG - chr5_4:34717937-34717956 None:intergenic 40.0%
GAAGGATTGTACACAACATG+AGG - chr5_4:34717976-34717995 None:intergenic 40.0%
! TGCAGCATATCTGAAATGGA+AGG - chr5_4:34717994-34718013 None:intergenic 40.0%
AGTTTAACCTGCCATAAGAC+TGG - chr5_4:34718086-34718105 None:intergenic 40.0%
! AAAGAGGTGTGACTATGACT+TGG + chr5_4:34718645-34718664 Msa0848780:three_prime_UTR 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG + chr5_4:34718730-34718749 Msa0848780:three_prime_UTR 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG + chr5_4:34718734-34718753 Msa0848780:three_prime_UTR 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG + chr5_4:34718735-34718754 Msa0848780:three_prime_UTR 40.0%
! ATGGGAACTTTTGACGTCAA+TGG + chr5_4:34718753-34718772 Msa0848780:three_prime_UTR 40.0%
CAATGGTCCGATATAAAGCA+AGG + chr5_4:34718770-34718789 Msa0848780:three_prime_UTR 40.0%
TCCGATATAAAGCAAGGCAA+AGG + chr5_4:34718776-34718795 Msa0848780:three_prime_UTR 40.0%
GCCTTTGCCTTGCTTTATAT+CGG - chr5_4:34718780-34718799 None:intergenic 40.0%
CTTTGACAAAGAAGGCTTGT+TGG + chr5_4:34718831-34718850 Msa0848780:three_prime_UTR 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG + chr5_4:34718885-34718904 Msa0848780:three_prime_UTR 40.0%
GGCAAAATCAGGAACAGAAA+AGG + chr5_4:34718945-34718964 Msa0848780:three_prime_UTR 40.0%
TTACACAAGAGACTGTTTCC+AGG + chr5_4:34719124-34719143 Msa0848780:intron 40.0%
TTAAGTGACTGAAAGGTCAC+GGG - chr5_4:34719157-34719176 None:intergenic 40.0%
GTTAAGTGACTGAAAGGTCA+CGG - chr5_4:34719158-34719177 None:intergenic 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG + chr5_4:34719484-34719503 Msa0848780:three_prime_UTR 40.0%
CAGTGGCCATATCATGAAGT+TGG - chr5_4:34715187-34715206 None:intergenic 45.0%
! TTTTGTTGGGGTTGTAGGGA+TGG - chr5_4:34715241-34715260 None:intergenic 45.0%
ATGAATCTTGCACTGCATGG+TGG - chr5_4:34715323-34715342 None:intergenic 45.0%
GTGATGAATCTTGCACTGCA+TGG - chr5_4:34715326-34715345 None:intergenic 45.0%
! AGCACCATGAATGGCTTTTG+TGG - chr5_4:34715348-34715367 None:intergenic 45.0%
! AAGCCATTCATGGTGCTGAA+TGG + chr5_4:34715351-34715370 Msa0848780:CDS 45.0%
TGGACTTCCATGCACTGTTA+TGG + chr5_4:34715415-34715434 Msa0848780:CDS 45.0%
AGCACTCTTCCTAAGTCTAG+TGG + chr5_4:34715461-34715480 Msa0848780:CDS 45.0%
CCAAAAGCAAGAACAACACC+AGG - chr5_4:34715503-34715522 None:intergenic 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG + chr5_4:34715500-34715519 Msa0848780:CDS 45.0%
TCTTATCTTTGGGCTACACC+TGG + chr5_4:34715530-34715549 Msa0848780:CDS 45.0%
AAAAAACCAGGAGCAACACC+AGG - chr5_4:34715551-34715570 None:intergenic 45.0%
GAAAGTGACGGTTACCAAAC+GGG + chr5_4:34715977-34715996 Msa0848780:intron 45.0%
TCCATAACCCATGTGTCCAT+TGG + chr5_4:34716102-34716121 Msa0848780:intron 45.0%
! ACCAATGGACACATGGGTTA+TGG - chr5_4:34716106-34716125 None:intergenic 45.0%
CGTTTCAACCAATGGACACA+TGG - chr5_4:34716113-34716132 None:intergenic 45.0%
! TGTGTCCATTGGTTGAAACG+AGG + chr5_4:34716113-34716132 Msa0848780:intron 45.0%
!!! CTGTTTTGTCGGCTCAAGTT+AGG - chr5_4:34716169-34716188 None:intergenic 45.0%
CTAACTTGAGCCGACAAAAC+AGG + chr5_4:34716167-34716186 Msa0848780:intron 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG + chr5_4:34716370-34716389 Msa0848780:intron 45.0%
! TACCTTTGAAGAGGGCTTCT+TGG - chr5_4:34716432-34716451 None:intergenic 45.0%
ATGAAGTCAGGATACGAGCT+GGG + chr5_4:34716499-34716518 Msa0848780:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_4:34716658-34716677 Msa0848780:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_4:34716659-34716678 Msa0848780:intron 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG + chr5_4:34716831-34716850 Msa0848780:intron 45.0%
!!! AATTTTTGGCACCATCACCG+GGG - chr5_4:34717470-34717489 None:intergenic 45.0%
TTAGACGGTCTTCACTCAAC+TGG + chr5_4:34717593-34717612 Msa0848780:three_prime_UTR 45.0%
CAAACTTCGATCAGTGGAGT+AGG - chr5_4:34717874-34717893 None:intergenic 45.0%
CTGGTGCAGCATATCTGAAA+TGG - chr5_4:34717998-34718017 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG - chr5_4:34718017-34718036 None:intergenic 45.0%
! CAGTCTTGTATTTGTCGACG+AGG - chr5_4:34718371-34718390 None:intergenic 45.0%
CTATTATCAGAGCGTAAGCC+AGG - chr5_4:34718601-34718620 None:intergenic 45.0%
!! GTGACTATGACTTGGTTGCA+TGG + chr5_4:34718653-34718672 Msa0848780:three_prime_UTR 45.0%
GGTTGCATGGAGAAAAACTG+TGG + chr5_4:34718666-34718685 Msa0848780:three_prime_UTR 45.0%
GAGCTGTTGGATTTAGATGG+CGG + chr5_4:34718724-34718743 Msa0848780:three_prime_UTR 45.0%
CGAGCAACACAACAGGATTA+TGG + chr5_4:34718892-34718911 Msa0848780:three_prime_UTR 45.0%
ATTATGGAGAAGCTGCCAAG+TGG + chr5_4:34718908-34718927 Msa0848780:three_prime_UTR 45.0%
ATTCACTGAAGCTCAACTCC+AGG + chr5_4:34718975-34718994 Msa0848780:three_prime_UTR 45.0%
ACAACTTAACCGTTGCACCA+AGG + chr5_4:34719176-34719195 Msa0848780:intron 45.0%
!!! CAAGGCTCCCTATTTTTGGA+GGG + chr5_4:34719194-34719213 Msa0848780:intron 45.0%
GGAAATTGTGCCCAAGAAGA+AGG + chr5_4:34719437-34719456 Msa0848780:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG + chr5_4:34719535-34719554 Msa0848780:three_prime_UTR 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG + chr5_4:34719553-34719572 Msa0848780:three_prime_UTR 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG + chr5_4:34719559-34719578 Msa0848780:three_prime_UTR 45.0%
!!! AAATTTTGTTATAAAATTTA+AGG - chr5_4:34717255-34717274 None:intergenic 5.0%
ATGGCCACTGTTGCAACCAA+AGG + chr5_4:34715197-34715216 Msa0848780:CDS 50.0%
AATCTTGCACTGCATGGTGG+TGG - chr5_4:34715320-34715339 None:intergenic 50.0%
CCACACTCCATAACAGTGCA+TGG - chr5_4:34715425-34715444 None:intergenic 50.0%
CCATGCACTGTTATGGAGTG+TGG + chr5_4:34715422-34715441 Msa0848780:CDS 50.0%
GGCTTGAATGTTACTGTCCC+TGG + chr5_4:34715482-34715501 Msa0848780:CDS 50.0%
CAGAGCCTCGTTTCAACCAA+TGG - chr5_4:34716121-34716140 None:intergenic 50.0%
AGCCAAGAAGCCCTCTTCAA+AGG + chr5_4:34716427-34716446 Msa0848780:intron 50.0%
GATGAAGTCAGGATACGAGC+TGG + chr5_4:34716498-34716517 Msa0848780:intron 50.0%
TGAAGTCAGGATACGAGCTG+GGG + chr5_4:34716500-34716519 Msa0848780:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_4:34716660-34716679 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_4:34716657-34716676 Msa0848780:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_4:34716663-34716682 Msa0848780:intron 50.0%
CTGCACTCTCTCCAGTCTTA+TGG + chr5_4:34718072-34718091 Msa0848780:three_prime_UTR 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG + chr5_4:34718076-34718095 Msa0848780:three_prime_UTR 50.0%
AAAACTGTGGAGCCTCGATG+TGG + chr5_4:34718679-34718698 Msa0848780:three_prime_UTR 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG + chr5_4:34718711-34718730 Msa0848780:three_prime_UTR 50.0%
TCAGGAACAGAAAAGGAGGG+TGG + chr5_4:34718952-34718971 Msa0848780:three_prime_UTR 50.0%
GGATGCGTACTCTAAGTTCC+TGG - chr5_4:34718996-34719015 None:intergenic 50.0%
TTAGCTGGACACTCGACAGA+TGG + chr5_4:34719035-34719054 Msa0848780:intron 50.0%
! AATAGGGAGCCTTGGTGCAA+CGG - chr5_4:34719188-34719207 None:intergenic 50.0%
! GCACCAAGGCTCCCTATTTT+TGG + chr5_4:34719190-34719209 Msa0848780:intron 50.0%
CCTCCAAAAATAGGGAGCCT+TGG - chr5_4:34719196-34719215 None:intergenic 50.0%
!!! CCAAGGCTCCCTATTTTTGG+AGG + chr5_4:34719193-34719212 Msa0848780:intron 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG + chr5_4:34719441-34719460 Msa0848780:three_prime_UTR 50.0%
TGTGCACCAGCCTTCTTCTT+GGG - chr5_4:34719450-34719469 None:intergenic 50.0%
TTGTGCACCAGCCTTCTTCT+TGG - chr5_4:34719451-34719470 None:intergenic 50.0%
TTTAGGGAAGAAGCTGGGGG+AGG + chr5_4:34716373-34716392 Msa0848780:intron 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG + chr5_4:34716374-34716393 Msa0848780:intron 55.0%
AAGCTGGGGGAGGGATCATT+TGG + chr5_4:34716383-34716402 Msa0848780:intron 55.0%
GAAGTCAGGATACGAGCTGG+GGG + chr5_4:34716501-34716520 Msa0848780:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_4:34716665-34716684 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_4:34716671-34716690 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_4:34716672-34716691 None:intergenic 55.0%
TGTACGAGACCCTGAGACCA+TGG - chr5_4:34717747-34717766 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG + chr5_4:34717788-34717807 Msa0848780:three_prime_UTR 55.0%
GCAGTTGCAACTGGAGCTGA+GGG - chr5_4:34718056-34718075 None:intergenic 55.0%
TGCAGTTGCAACTGGAGCTG+AGG - chr5_4:34718057-34718076 None:intergenic 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG - chr5_4:34718065-34718084 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG - chr5_4:34718694-34718713 None:intergenic 55.0%
! CTCGATGTGGCGCTGAACTT+AGG + chr5_4:34718692-34718711 Msa0848780:three_prime_UTR 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG + chr5_4:34718697-34718716 Msa0848780:three_prime_UTR 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_4:34719145-34719164 None:intergenic 55.0%
GAGGAGATGGATCCCAAGAG+AGG + chr5_4:34719572-34719591 Msa0848780:three_prime_UTR 55.0%
!! CTTGCACTGCATGGTGGTGG+TGG - chr5_4:34715317-34715336 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG + chr5_4:34715542-34715561 Msa0848780:CDS 60.0%
AAGGTCGCCAGTATCAGCCC+CGG + chr5_4:34717450-34717469 Msa0848780:three_prime_UTR 60.0%
ACCATCACCGGGGCTGATAC+TGG - chr5_4:34717460-34717479 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG - chr5_4:34718047-34718066 None:intergenic 60.0%
GCCAGTATCAGCCCCGGTGA+TGG + chr5_4:34717456-34717475 Msa0848780:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 34715104 34719861 34715104 ID=Msa0848780;Name=Msa0848780
chr5_4 mRNA 34715104 34719861 34715104 ID=Msa0848780-mRNA-1;Parent=Msa0848780;Name=Msa0848780-mRNA-1;_AED=0.11;_eAED=0.11;_QI=93|0.83|1|1|1|0.85|7|1534|182
chr5_4 exon 34715104 34715625 34715104 ID=Msa0848780-mRNA-1:exon:11697;Parent=Msa0848780-mRNA-1
chr5_4 exon 34717092 34717662 34717092 ID=Msa0848780-mRNA-1:exon:11698;Parent=Msa0848780-mRNA-1
chr5_4 exon 34717756 34717849 34717756 ID=Msa0848780-mRNA-1:exon:11699;Parent=Msa0848780-mRNA-1
chr5_4 exon 34718004 34718097 34718004 ID=Msa0848780-mRNA-1:exon:11700;Parent=Msa0848780-mRNA-1
chr5_4 exon 34718200 34718256 34718200 ID=Msa0848780-mRNA-1:exon:11701;Parent=Msa0848780-mRNA-1
chr5_4 exon 34718592 34719005 34718592 ID=Msa0848780-mRNA-1:exon:11702;Parent=Msa0848780-mRNA-1
chr5_4 exon 34719438 34719861 34719438 ID=Msa0848780-mRNA-1:exon:11703;Parent=Msa0848780-mRNA-1
chr5_4 five_prime_UTR 34715104 34715196 34715104 ID=Msa0848780-mRNA-1:five_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 CDS 34715197 34715625 34715197 ID=Msa0848780-mRNA-1:cds;Parent=Msa0848780-mRNA-1
chr5_4 CDS 34717092 34717211 34717092 ID=Msa0848780-mRNA-1:cds;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34717212 34717662 34717212 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34717756 34717849 34717756 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34718004 34718097 34718004 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34718200 34718256 34718200 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34718592 34719005 34718592 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
chr5_4 three_prime_UTR 34719438 34719861 34719438 ID=Msa0848780-mRNA-1:three_prime_utr;Parent=Msa0848780-mRNA-1
Gene Sequence

>Msa0848780

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCAACAAAAAATCCATTTTCCTTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGCTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTTATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGTAGTCTCTTTAATTAA

Protein sequence

>Msa0848780

MATVATKGIGVTKLHPYNPNKKSIFLGQRLRIKPSNNEQPPPPCSARFITTKAIHGAEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKRSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVGSLFN*