AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0366120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366120 MtrunA17_Chr3g0106921 96.250 320 12 0 1 320 1 320 0.0 635
Msa0366120 MtrunA17_Chr5g0432441 72.013 318 88 1 4 320 9 326 9.76e-169 471
Msa0366120 MtrunA17_Chr5g0438021 69.256 309 94 1 12 320 18 325 1.34e-159 448
Msa0366120 MtrunA17_Chr3g0129051 67.197 314 102 1 7 320 10 322 4.33e-154 434
Msa0366120 MtrunA17_Chr3g0129061 67.197 314 102 1 7 320 10 322 8.32e-153 431
Msa0366120 MtrunA17_Chr3g0129041 67.197 314 102 1 7 320 10 322 2.45e-149 422
Msa0366120 MtrunA17_Chr2g0320091 57.812 320 133 2 1 320 1 318 2.46e-132 379
Msa0366120 MtrunA17_Chr2g0320071 56.250 320 137 2 1 320 1 317 4.92e-130 373
Msa0366120 MtrunA17_Chr2g0320101 55.937 320 138 2 1 320 1 317 1.32e-128 369
Msa0366120 MtrunA17_Chr3g0114451 58.861 316 120 3 12 320 6 318 5.84e-128 368
Msa0366120 MtrunA17_Chr4g0038151 56.522 322 137 3 1 320 1 321 5.50e-127 365
Msa0366120 MtrunA17_Chr7g0244461 55.128 312 137 2 9 320 4 312 7.87e-127 365
Msa0366120 MtrunA17_Chr4g0013201 56.711 298 126 2 23 320 44 338 1.46e-126 365
Msa0366120 MtrunA17_Chr7g0244451 56.646 316 134 2 5 320 4 316 1.72e-126 364
Msa0366120 MtrunA17_Chr2g0320061 56.386 321 136 4 1 320 1 318 3.51e-126 363
Msa0366120 MtrunA17_Chr4g0043391 57.827 313 128 4 11 320 13 324 4.86e-126 363
Msa0366120 MtrunA17_Chr4g0038161 58.147 313 125 4 13 320 9 320 5.39e-126 363
Msa0366120 MtrunA17_Chr4g0038171 58.360 317 126 5 7 320 8 321 1.32e-125 362
Msa0366120 MtrunA17_Chr2g0320051 54.517 321 142 3 1 320 1 318 1.63e-122 354
Msa0366120 MtrunA17_Chr4g0013191 56.066 305 132 2 17 320 37 340 4.98e-122 353
Msa0366120 MtrunA17_Chr4g0013171 57.643 314 129 3 8 320 11 321 7.87e-122 352
Msa0366120 MtrunA17_Chr4g0013181 59.524 294 116 2 28 320 62 353 4.45e-119 347
Msa0366120 MtrunA17_Chr2g0320031 54.114 316 139 5 8 320 7 319 5.55e-119 345
Msa0366120 MtrunA17_Chr3g0106901 56.508 315 134 2 6 320 12 323 5.82e-118 343
Msa0366120 MtrunA17_Chr1g0213061 53.943 317 138 5 8 320 9 321 9.37e-117 340
Msa0366120 MtrunA17_Chr7g0224371 54.313 313 136 5 11 320 14 322 9.30e-116 337
Msa0366120 MtrunA17_Chr5g0432341 57.096 303 121 7 23 320 23 321 6.78e-115 335
Msa0366120 MtrunA17_Chr5g0432351 56.766 303 122 7 23 320 23 321 1.04e-114 334
Msa0366120 MtrunA17_Chr5g0432331 54.232 319 131 8 13 320 38 352 5.06e-113 331
Msa0366120 MtrunA17_Chr3g0107881 50.774 323 151 6 3 320 5 324 1.58e-109 321
Msa0366120 MtrunA17_Chr7g0258811 49.390 328 152 7 4 320 47 371 2.88e-103 307
Msa0366120 MtrunA17_Chr5g0404721 50.000 304 141 4 25 320 30 330 5.03e-102 302
Msa0366120 MtrunA17_Chr8g0372601 50.658 304 139 4 25 320 30 330 5.55e-102 302
Msa0366120 MtrunA17_Chr5g0402571 47.188 320 159 3 8 320 10 326 9.57e-100 296
Msa0366120 MtrunA17_Chr1g0175561 48.466 326 153 7 7 320 4 326 1.49e-99 296
Msa0366120 MtrunA17_Chr1g0155611 51.148 305 137 4 25 320 46 347 1.67e-99 296
Msa0366120 MtrunA17_Chr2g0299691 50.154 325 140 7 12 320 40 358 1.79e-98 294
Msa0366120 MtrunA17_Chr5g0402581 47.937 315 153 4 13 320 16 326 2.00e-97 290
Msa0366120 MtrunA17_Chr4g0070951 48.765 324 150 6 8 320 11 329 2.71e-97 290
Msa0366120 MtrunA17_Chr5g0432401 49.686 318 106 9 11 317 9 283 6.82e-96 285
Msa0366120 MtrunA17_Chr2g0292251 48.220 309 148 4 21 320 24 329 3.74e-95 286
Msa0366120 MtrunA17_Chr5g0400331 48.718 312 144 4 22 320 23 331 8.35e-95 284
Msa0366120 MtrunA17_Chr2g0291751 49.838 309 143 5 21 320 25 330 9.84e-95 285
Msa0366120 MtrunA17_Chr4g0068621 45.045 333 161 4 9 320 5 336 1.78e-94 283
Msa0366120 MtrunA17_Chr2g0292271 47.188 320 154 5 13 320 14 330 3.63e-94 283
Msa0366120 MtrunA17_Chr2g0292211 46.769 325 157 5 9 320 20 341 4.08e-94 283
Msa0366120 MtrunA17_Chr2g0292181 47.840 324 153 5 10 320 19 339 4.81e-94 283
Msa0366120 MtrunA17_Chr2g0292151 48.220 309 148 5 21 320 25 330 4.97e-94 283
Msa0366120 MtrunA17_Chr2g0292101 46.541 318 158 4 12 320 12 326 6.58e-94 282
Msa0366120 MtrunA17_Chr2g0292091 45.860 314 158 5 16 320 15 325 1.85e-92 278
Msa0366120 MtrunA17_Chr2g0292261 47.401 327 156 5 7 320 7 330 4.09e-92 278
Msa0366120 MtrunA17_Chr2g0292241 45.846 325 160 5 9 320 9 330 2.70e-91 276
Msa0366120 MtrunA17_Chr4g0013821 45.779 308 154 5 20 320 23 324 3.84e-91 275
Msa0366120 MtrunA17_Chr2g0292111 46.278 309 154 5 21 320 25 330 1.63e-88 269
Msa0366120 MtrunA17_Chr4g0013721 45.603 307 154 5 21 320 96 396 1.80e-88 271
Msa0366120 MtrunA17_Chr5g0421411 47.586 290 133 6 45 320 1 285 5.46e-87 262
Msa0366120 MtrunA17_Chr2g0292291 45.631 309 157 4 21 320 26 332 6.81e-87 265
Msa0366120 MtrunA17_Chr1g0204011 39.818 329 182 6 1 320 1 322 8.81e-84 255
Msa0366120 MtrunA17_Chr2g0322861 43.789 322 167 7 8 320 70 386 7.08e-83 255
Msa0366120 MtrunA17_Chr1g0188431 41.745 321 170 6 9 320 15 327 8.64e-81 248
Msa0366120 MtrunA17_Chr6g0477071 42.434 304 166 5 18 320 47 342 1.59e-80 248
Msa0366120 MtrunA17_Chr4g0024121 41.390 331 178 7 1 320 1 326 6.25e-79 243
Msa0366120 MtrunA17_Chr7g0225221 40.248 323 173 6 8 320 8 320 4.68e-76 236
Msa0366120 MtrunA17_Chr3g0128061 39.938 323 183 4 6 320 7 326 3.30e-75 234
Msa0366120 MtrunA17_Chr1g0194151 40.606 330 183 5 3 320 5 333 1.21e-74 233
Msa0366120 MtrunA17_Chr5g0405991 39.564 321 177 8 7 320 6 316 5.40e-74 230
Msa0366120 MtrunA17_Chr1g0157051 40.317 315 171 7 11 316 8 314 5.43e-74 230
Msa0366120 MtrunA17_Chr6g0467161 43.519 324 165 7 8 320 20 336 5.62e-74 231
Msa0366120 MtrunA17_Chr8g0371381 41.584 303 161 7 25 320 26 319 1.37e-73 229
Msa0366120 MtrunA17_Chr2g0279041 39.940 333 179 7 1 320 1 325 8.49e-72 225
Msa0366120 MtrunA17_Chr2g0296621 40.461 304 161 6 25 320 50 341 1.19e-70 223
Msa0366120 MtrunA17_Chr1g0194271 39.645 338 182 7 3 320 5 340 1.28e-70 223
Msa0366120 MtrunA17_Chr4g0063671 40.432 324 173 7 9 320 5 320 5.74e-69 218
Msa0366120 MtrunA17_Chr7g0254231 40.604 298 167 5 25 320 22 311 1.34e-68 216
Msa0366120 MtrunA17_Chr6g0460711 38.535 314 187 4 9 320 5 314 1.43e-68 216
Msa0366120 MtrunA17_Chr4g0076211 39.130 299 163 6 30 320 46 333 4.35e-67 213
Msa0366120 MtrunA17_Chr1g0197411 38.125 320 185 6 11 320 14 330 7.32e-67 213
Msa0366120 MtrunA17_Chr7g0254201 38.889 306 174 4 20 320 15 312 9.10e-67 212
Msa0366120 MtrunA17_Chr1g0164891 40.397 302 168 5 29 320 93 392 1.78e-66 213
Msa0366120 MtrunA17_Chr1g0181511 36.545 301 186 4 23 320 25 323 4.04e-65 208
Msa0366120 MtrunA17_Chr4g0075241 34.796 319 201 3 7 320 11 327 4.61e-65 207
Msa0366120 MtrunA17_Chr2g0316481 36.826 334 172 7 23 319 74 405 7.67e-65 209
Msa0366120 MtrunA17_Chr2g0316191 37.015 335 171 7 23 319 74 406 1.16e-64 209
Msa0366120 MtrunA17_Chr4g0046131 41.311 305 164 7 24 316 41 342 1.38e-64 207
Msa0366120 MtrunA17_Chr3g0114461 54.450 191 83 3 131 320 5 192 1.88e-64 201
Msa0366120 MtrunA17_Chr2g0316791 36.527 334 173 7 23 319 74 405 4.30e-64 207
Msa0366120 MtrunA17_Chr1g0181431 36.721 305 186 5 19 320 23 323 6.35e-64 205
Msa0366120 MtrunA17_Chr7g0268501 37.072 321 185 8 9 320 8 320 1.16e-63 204
Msa0366120 MtrunA17_Chr7g0268521 37.072 321 185 8 9 320 8 320 1.16e-63 204
Msa0366120 MtrunA17_Chr5g0401431 37.500 320 183 7 9 316 11 325 1.20e-63 204
Msa0366120 MtrunA17_Chr8g0364291 37.461 323 190 5 7 320 5 324 6.60e-63 202
Msa0366120 MtrunA17_Chr6g0467251 37.654 324 185 6 8 320 11 328 6.82e-63 203
Msa0366120 MtrunA17_Chr4g0072091 39.806 309 166 7 24 320 23 323 8.39e-63 202
Msa0366120 MtrunA17_Chr2g0316831 36.228 334 174 7 23 319 110 441 1.11e-62 205
Msa0366120 MtrunA17_Chr2g0278671 39.744 312 168 7 21 320 20 323 1.96e-62 201
Msa0366120 MtrunA17_Chr1g0148021 37.346 324 185 8 9 320 11 328 6.20e-62 200
Msa0366120 MtrunA17_Chr6g0467121 39.799 299 168 7 25 320 74 363 1.04e-61 201
Msa0366120 MtrunA17_Chr1g0181481 35.880 301 188 4 23 320 25 323 1.82e-61 198
Msa0366120 MtrunA17_Chr4g0053871 37.421 318 186 8 10 319 11 323 1.08e-60 196
Msa0366120 MtrunA17_Chr3g0136751 33.739 329 202 4 1 320 1 322 1.26e-59 194
Msa0366120 MtrunA17_Chr6g0451571 34.405 311 193 6 18 320 27 334 5.23e-59 192
Msa0366120 MtrunA17_Chr2g0311251 35.988 339 161 9 23 316 9 336 2.79e-58 191
Msa0366120 MtrunA17_Chr2g0279061 41.445 263 135 6 69 320 12 266 1.88e-57 186
Msa0366120 MtrunA17_Chr2g0311241 32.258 372 171 8 23 316 58 426 3.53e-57 190
Msa0366120 MtrunA17_Chr2g0329641 32.827 329 198 5 9 320 13 335 5.03e-57 187
Msa0366120 MtrunA17_Chr4g0074851 33.846 325 201 6 4 316 2 324 7.51e-56 184
Msa0366120 MtrunA17_Chr5g0413051 35.669 314 187 8 19 320 67 377 6.30e-54 180
Msa0366120 MtrunA17_Chr3g0114491 66.364 110 37 0 24 133 17 126 1.93e-45 151
Msa0366120 MtrunA17_Chr2g0316811 45.029 171 90 3 23 191 48 216 1.06e-44 155
Msa0366120 MtrunA17_Chr2g0292281 41.315 213 103 4 117 320 17 216 1.51e-44 152
Msa0366120 MtrunA17_Chr2g0316141 36.059 269 150 7 71 319 11 277 4.43e-44 152
Msa0366120 MtrunA17_Chr2g0316181 36.059 269 150 7 71 319 11 277 4.43e-44 152
Msa0366120 MtrunA17_Chr4g0004591 29.022 317 159 5 25 316 77 352 2.92e-42 149
Msa0366120 MtrunA17_Chr5g0432321 55.833 120 49 3 146 265 17 132 6.12e-35 124
Msa0366120 MtrunA17_Chr1g0181501 33.333 189 121 4 135 320 3 189 1.49e-30 114
Msa0366120 MtrunA17_Chr5g0432361 53.125 96 42 2 224 317 12 106 3.80e-27 102
Msa0366120 MtrunA17_Chr6g0468731 59.722 72 25 2 64 135 22 89 8.12e-21 85.5
Msa0366120 MtrunA17_Chr3g0104101 37.671 146 71 6 190 320 9 149 2.53e-20 85.9
Msa0366120 MtrunA17_Chr1g0181491 37.168 113 69 2 23 135 10 120 2.97e-19 82.8
Msa0366120 MtrunA17_Chr3g0137751 28.682 258 116 10 57 299 106 310 5.13e-19 85.9
Msa0366120 MtrunA17_Chr7g0254181 43.000 100 53 1 93 192 27 122 9.12e-19 81.6
Msa0366120 MtrunA17_Chr4g0013811 50.000 74 36 1 136 209 6 78 1.43e-18 79.0
Msa0366120 MtrunA17_Chr2g0316771 27.473 182 97 3 173 319 4 185 1.72e-13 68.2
Msa0366120 MtrunA17_Chr1g0196191 50.000 66 32 1 67 132 27 91 3.52e-12 63.5
Msa0366120 MtrunA17_Chr7g0254171 41.667 72 41 1 71 142 4 74 2.19e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0366120 AT5G05340.1 68.106 301 95 1 20 320 25 324 5.92e-153 432
Msa0366120 AT5G58400.1 64.650 314 111 0 7 320 12 325 4.64e-152 429
Msa0366120 AT5G58390.1 65.705 312 107 0 9 320 5 316 1.34e-148 420
Msa0366120 AT1G14550.1 52.866 314 144 4 9 320 10 321 3.98e-114 333
Msa0366120 AT1G14540.1 50.321 312 150 4 11 320 7 315 4.57e-107 315
Msa0366120 AT4G36430.1 48.693 306 146 4 23 320 28 330 1.19e-102 304
Msa0366120 AT5G06720.1 47.335 319 156 4 11 320 18 333 5.29e-102 303
Msa0366120 AT2G18150.1 48.667 300 143 4 29 320 40 336 2.59e-101 301
Msa0366120 AT1G44970.1 49.186 307 144 4 23 320 43 346 3.78e-101 301
Msa0366120 AT5G66390.1 47.403 308 151 4 21 320 29 333 1.09e-100 300
Msa0366120 AT5G06730.1 47.335 319 156 5 11 320 19 334 1.19e-100 300
Msa0366120 AT3G50990.1 48.377 308 148 5 21 320 37 341 7.57e-99 295
Msa0366120 AT2G18140.1 47.368 304 149 4 25 320 35 335 3.46e-97 291
Msa0366120 AT2G38390.1 48.710 310 146 6 21 320 27 333 4.23e-95 286
Msa0366120 AT4G16270.1 50.000 302 134 6 29 320 54 348 8.12e-95 285
Msa0366120 AT2G35380.1 46.364 330 157 6 8 320 9 335 2.43e-94 283
Msa0366120 AT4G08780.1 47.452 314 151 5 18 320 17 327 2.46e-94 284
Msa0366120 AT3G32980.1 46.154 325 161 5 7 320 13 334 2.53e-93 281
Msa0366120 AT1G49570.1 48.684 304 145 4 22 316 45 346 1.64e-92 279
Msa0366120 AT4G08770.1 47.452 314 151 5 18 320 17 327 3.03e-92 278
Msa0366120 AT2G38380.1 47.368 323 155 7 10 320 14 333 1.28e-91 277
Msa0366120 AT1G68850.1 43.366 309 159 5 25 320 30 335 1.42e-91 276
Msa0366120 AT5G19890.1 46.605 324 150 7 11 320 13 327 6.76e-90 271
Msa0366120 AT3G49120.1 44.582 323 165 5 9 320 16 335 8.90e-87 265
Msa0366120 AT3G49110.1 45.283 318 160 5 14 320 22 336 1.16e-86 264
Msa0366120 AT2G22420.1 42.812 320 170 5 8 320 6 319 2.62e-86 263
Msa0366120 AT5G19880.1 43.344 323 167 6 11 320 10 329 2.42e-85 260
Msa0366120 AT5G51890.1 41.159 328 179 6 1 320 1 322 1.95e-81 250
Msa0366120 AT4G33420.1 43.770 313 165 6 11 320 21 325 2.60e-81 249
Msa0366120 AT3G01190.1 41.945 329 174 7 1 320 1 321 6.36e-81 248
Msa0366120 AT4G33420.2 43.770 313 165 6 11 320 68 372 9.09e-81 250
Msa0366120 AT1G05260.1 43.210 324 167 8 9 320 7 325 5.47e-79 244
Msa0366120 AT5G17820.1 41.121 321 167 7 8 320 7 313 1.02e-77 240
Msa0366120 AT4G11290.1 40.741 324 177 6 9 320 6 326 1.16e-77 240
Msa0366120 AT5G17820.2 41.121 321 167 7 8 320 60 366 9.15e-77 239
Msa0366120 AT3G03670.1 39.506 324 179 5 7 320 5 321 2.08e-74 232
Msa0366120 AT5G15180.1 41.311 305 163 7 25 320 32 329 6.41e-74 231
Msa0366120 AT5G14130.1 38.365 318 181 5 12 320 19 330 1.29e-73 230
Msa0366120 AT5G42180.1 40.764 314 171 7 11 317 9 314 3.89e-73 228
Msa0366120 AT5G14130.2 38.365 318 181 5 12 320 60 371 6.00e-73 230
Msa0366120 AT2G35380.2 49.393 247 109 5 87 320 4 247 9.87e-73 225
Msa0366120 AT5G64120.1 40.134 299 163 6 29 320 39 328 2.85e-72 226
Msa0366120 AT3G21770.1 41.667 312 165 8 17 316 18 324 1.16e-71 225
Msa0366120 AT1G71695.1 40.803 299 171 4 25 320 44 339 1.65e-71 226
Msa0366120 AT2G41480.1 39.450 327 176 8 8 320 10 328 3.01e-71 224
Msa0366120 AT4G26010.1 39.873 316 179 5 7 320 3 309 1.19e-69 219
Msa0366120 AT4G26010.2 39.252 321 184 5 2 320 26 337 2.68e-69 219
Msa0366120 AT1G30870.1 40.196 306 162 6 25 320 51 345 1.61e-68 218
Msa0366120 AT1G05240.1 38.079 302 171 6 25 316 26 321 2.91e-68 216
Msa0366120 AT1G05250.1 38.079 302 171 6 25 316 26 321 2.91e-68 216
Msa0366120 AT5G40150.1 36.304 303 188 4 21 320 28 328 4.97e-67 213
Msa0366120 AT4G25980.1 39.385 325 176 7 9 320 10 326 7.53e-67 213
Msa0366120 AT1G77100.1 40.248 323 175 8 9 320 4 319 1.62e-66 211
Msa0366120 AT3G28200.1 35.762 302 190 4 21 320 17 316 5.14e-66 210
Msa0366120 AT5G39580.1 38.941 321 179 8 9 320 7 319 7.27e-66 210
Msa0366120 AT1G34510.1 38.978 313 180 7 10 320 6 309 1.06e-65 209
Msa0366120 AT2G18980.1 40.367 327 171 9 7 320 8 323 1.35e-65 209
Msa0366120 AT4G37530.1 37.898 314 180 6 18 320 20 329 2.37e-65 209
Msa0366120 AT5G67400.1 38.006 321 182 7 12 320 14 329 2.85e-64 206
Msa0366120 AT4G17690.1 37.667 300 180 5 25 320 26 322 7.60e-64 205
Msa0366120 AT4G31760.1 35.802 324 192 5 6 320 10 326 1.11e-63 204
Msa0366120 AT5G47000.1 37.037 324 191 7 6 320 11 330 1.31e-63 204
Msa0366120 AT2G24800.1 35.505 307 183 5 23 320 29 329 1.42e-62 202
Msa0366120 AT4G37520.1 38.065 310 175 7 23 320 25 329 1.75e-61 199
Msa0366120 AT2G34060.1 39.542 306 170 7 24 317 41 343 1.02e-60 197
Msa0366120 AT3G49960.1 37.072 321 185 8 12 320 14 329 1.19e-60 197
Msa0366120 AT4G30170.1 38.264 311 171 6 22 320 24 325 1.33e-60 196
Msa0366120 AT2G37130.1 35.806 310 189 6 17 320 22 327 2.05e-60 196
Msa0366120 AT4G33870.1 30.861 337 191 5 20 316 63 397 6.43e-60 197
Msa0366120 AT1G24110.1 37.267 322 184 8 12 320 6 322 7.15e-60 194
Msa0366120 AT4G37520.2 37.742 310 173 8 23 320 25 326 1.11e-59 194
Msa0366120 AT2G37130.2 36.455 299 180 6 28 320 2 296 2.70e-59 192
Msa0366120 AT5G64100.1 35.762 302 173 6 29 320 41 331 1.03e-56 187
Msa0366120 AT5G64110.1 35.671 328 184 7 11 320 12 330 5.98e-56 184
Msa0366120 AT4G37530.2 39.924 263 143 6 18 269 20 278 8.02e-56 183
Msa0366120 AT4G21960.1 33.123 317 201 5 9 316 9 323 2.02e-54 181
Msa0366120 AT5G22410.1 36.688 308 173 9 23 318 26 323 2.18e-53 178
Msa0366120 AT2G39040.1 36.102 313 187 7 19 320 40 350 4.44e-53 178
Msa0366120 AT2G43480.1 32.492 317 195 5 16 320 26 335 1.90e-51 173
Msa0366120 AT5G24070.1 32.686 309 189 6 24 320 34 335 6.33e-51 172
Msa0366120 AT3G17070.1 32.441 299 194 3 25 316 38 335 7.65e-49 166
Msa0366120 AT4G25980.2 44.865 185 97 3 9 193 55 234 8.81e-46 157
Msa0366120 AT5G39580.2 39.726 219 120 5 10 226 8 216 5.67e-43 148
Msa0366120 AT2G24800.2 40.828 169 95 2 23 191 29 192 8.94e-38 135
Msa0366120 AT3G17070.2 30.268 261 173 4 67 320 18 276 2.34e-35 129
Msa0366120 AT4G32320.1 28.239 301 144 9 16 299 74 319 3.46e-20 89.7
Msa0366120 AT3G42570.1 30.693 101 70 0 93 193 49 149 2.46e-13 67.0

Find 66 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTTGTTTCCCAGTTAA+AGG 0.132682 3_1:-60555290 None:intergenic
TTCTTATATTGCATTGCTTT+TGG 0.227972 3_1:+60551012 Msa0366120:CDS
TCTAGCTTCACTTGAAAATA+TGG 0.240068 3_1:+60550976 Msa0366120:exon
TCTCCTGAGCCACTTGTTCT+AGG 0.244890 3_1:-60555056 None:intergenic
TCACAAGGGTTGATGTATTA+TGG 0.263654 3_1:+60555449 Msa0366120:three_prime_UTR
AAGGACATGGTTGCTTTATC+TGG 0.287607 3_1:+60554087 Msa0366120:CDS
GGAGATAATAAGCCTTTAAC+TGG 0.288260 3_1:+60555278 Msa0366120:CDS
AGCAATGCAATATAAGAATT+AGG 0.345453 3_1:-60551007 None:intergenic
TTGTAGGAGCTTGAATTAGA+AGG 0.346405 3_1:+60555325 Msa0366120:exon
CTGGGAAACAAGGGGAGATT+AGG 0.373206 3_1:+60555297 Msa0366120:CDS
CCTCTCACAGAATTGTTGTT+AGG 0.375225 3_1:-60553153 None:intergenic
AATTGATGCAATAAAATCTA+AGG 0.377388 3_1:+60553185 Msa0366120:CDS
AAGTTGAGATAAGGTTGGTT+AGG 0.432446 3_1:-60554041 None:intergenic
TTTCAGGAGCTCACACAATA+GGG 0.432739 3_1:+60554946 Msa0366120:intron
GGGAGATTAGGAAGAATTGT+AGG 0.435594 3_1:+60555309 Msa0366120:CDS
CTCCTGAGCCACTTGTTCTA+GGG 0.446044 3_1:-60555055 None:intergenic
TGTAGCGGCAATAATTAAGA+TGG 0.447538 3_1:+60555256 Msa0366120:CDS
GAGCTTTAAAAGTTGAGATA+AGG 0.452562 3_1:-60554050 None:intergenic
TTCTTCAAGTTAAAATATAG+TGG 0.452601 3_1:+60555393 Msa0366120:three_prime_UTR
ACAGTACATTTGCTAAGATA+AGG 0.454514 3_1:+60555021 Msa0366120:CDS
AGGTTGGTTAGGTTAGATGT+AGG 0.468281 3_1:-60554030 None:intergenic
TGCCCTAGAACAAGTGGCTC+AGG 0.473241 3_1:+60555053 Msa0366120:CDS
GTTAGGTTAGATGTAGGAGC+TGG 0.487957 3_1:-60554024 None:intergenic
AATTTCACTGCTGCAAACAC+TGG 0.493527 3_1:+60553994 Msa0366120:CDS
AAAACAAAATAGGGTTGTGA+TGG 0.494547 3_1:+60553078 Msa0366120:intron
AAGAATCTCATTATCAAAAG+AGG 0.495616 3_1:+60555137 Msa0366120:CDS
AAGCCTTTAACTGGGAAACA+AGG 0.501073 3_1:+60555287 Msa0366120:CDS
TTTAAAAGTTGAGATAAGGT+TGG 0.503940 3_1:-60554046 None:intergenic
AGATAAAGCAACCATGTCCT+TGG 0.505640 3_1:-60554085 None:intergenic
ATTTCACTGCTGCAAACACT+GGG 0.508356 3_1:+60553995 Msa0366120:CDS
GATGACACTTCGTCCTTCAA+AGG 0.509796 3_1:+60553114 Msa0366120:CDS
TATTATGGATATGTATAAAG+TGG 0.517370 3_1:+60555464 Msa0366120:three_prime_UTR
TCTGATCAAGTACTCTTCAA+TGG 0.517394 3_1:+60555170 Msa0366120:CDS
TCAGCACATGAGACCACACC+AGG 0.521560 3_1:-60553222 None:intergenic
CTGAAGAAATCCCTATAAGA+AGG 0.522804 3_1:-60551039 None:intergenic
AGGACTTTCTGCCAAGGACA+TGG 0.532504 3_1:+60554074 Msa0366120:CDS
TGTAGGAGCTTGAATTAGAA+GGG 0.535801 3_1:+60555326 Msa0366120:exon
TAATTGTTGTCAAAATGAGT+TGG 0.542091 3_1:-60555110 None:intergenic
GTAGCGGCAATAATTAAGAT+GGG 0.547978 3_1:+60555257 Msa0366120:CDS
TGTTGCTGTCGTTGTATATG+TGG 0.550869 3_1:-60554995 None:intergenic
CGCTACAAAATCAGAATCAA+AGG 0.560387 3_1:-60555240 None:intergenic
GGTCTCATGTGCTGATATAG+TGG 0.564157 3_1:+60553230 Msa0366120:CDS
TGAAATAAATTATCATCACA+AGG 0.568019 3_1:+60555434 Msa0366120:three_prime_UTR
AACAGAATCACGAGCAGTAA+TGG 0.568501 3_1:-60553253 None:intergenic
GCAAGGTGTACAAGTTTCAG+AGG 0.574999 3_1:+60554972 Msa0366120:CDS
AGCCTTTAACTGGGAAACAA+GGG 0.580782 3_1:+60555288 Msa0366120:CDS
ATGGATATGTATAAAGTGGA+AGG 0.581463 3_1:+60555468 Msa0366120:three_prime_UTR
AAGAACTGCCCTAGAACAAG+TGG 0.582954 3_1:+60555047 Msa0366120:CDS
CTCACACAATAGGGAGAGCA+AGG 0.588677 3_1:+60554955 Msa0366120:CDS
AAACAAAATAGGGTTGTGAT+GGG 0.589771 3_1:+60553079 Msa0366120:intron
AAGGTGGAAGCAATATGCCC+TGG 0.603139 3_1:+60553204 Msa0366120:CDS
AGTCGTGGAAGAAGAGACGA+AGG 0.608143 3_1:-60551171 None:intergenic
TGATGCAATAAAATCTAAGG+TGG 0.609037 3_1:+60553188 Msa0366120:CDS
CCTAACAACAATTCTGTGAG+AGG 0.611912 3_1:+60553153 Msa0366120:CDS
AGCTCAAGGACTTTCTGCCA+AGG 0.614786 3_1:+60554068 Msa0366120:CDS
TTACATCAACAAAGCAGTCG+TGG 0.618609 3_1:-60551186 None:intergenic
AAGTTGGGAGAAGAGATTCA+AGG 0.621582 3_1:+60553965 Msa0366120:CDS
GCCTTTAACTGGGAAACAAG+GGG 0.634825 3_1:+60555289 Msa0366120:CDS
GAAATAAATTATCATCACAA+GGG 0.635034 3_1:+60555435 Msa0366120:three_prime_UTR
GATCAAGTACTCTTCAATGG+TGG 0.638235 3_1:+60555173 Msa0366120:CDS
GAGATAATAAGCCTTTAACT+GGG 0.654488 3_1:+60555279 Msa0366120:CDS
GTTGCCAAAGAAAATCGCAT+CGG 0.655320 3_1:+60551139 Msa0366120:CDS
GGAAGCAATATGCCCTGGTG+TGG 0.672684 3_1:+60553209 Msa0366120:CDS
GCAGTCTGTTGTTAAAACTG+CGG 0.724894 3_1:+60551117 Msa0366120:CDS
CAGCACATGAGACCACACCA+GGG 0.765626 3_1:-60553221 None:intergenic
TTTCACTGCTGCAAACACTG+GGG 0.769355 3_1:+60553996 Msa0366120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAAACTATTAATTA+GGG - chr3_1:60551570-60551589 None:intergenic 10.0%
!! AAGAAAATAAACTATTAATT+AGG - chr3_1:60551571-60551590 None:intergenic 10.0%
!!! TAATTAATAGTTTATTTTCT+TGG + chr3_1:60551570-60551589 Msa0366120:intron 10.0%
!!! TGTTTAATAAATATTTTGAT+TGG - chr3_1:60551900-60551919 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGACAAA+AGG + chr3_1:60552288-60552307 Msa0366120:intron 10.0%
!!! TTGTTTTAATTTTCAAATAA+TGG - chr3_1:60554149-60554168 None:intergenic 10.0%
!!! GTATTTATTTGAAATAAAAA+TGG - chr3_1:60554518-60554537 None:intergenic 10.0%
!! CTATATATATATATACAAAG+GGG + chr3_1:60550909-60550928 Msa0366120:five_prime_UTR 15.0%
!!! CTATATATGATCTTATTTTT+AGG + chr3_1:60551226-60551245 Msa0366120:intron 15.0%
!!! GTTTTATTTTTATCTTTCAA+TGG + chr3_1:60551248-60551267 Msa0366120:intron 15.0%
!!! AAAGAAATTATTAGTTTTGT+GGG - chr3_1:60551414-60551433 None:intergenic 15.0%
!!! AAAAGAAATTATTAGTTTTG+TGG - chr3_1:60551415-60551434 None:intergenic 15.0%
!!! TATTTTCTTGAATTATTAGT+TGG + chr3_1:60551451-60551470 Msa0366120:intron 15.0%
!!! ATTTTCTTGAATTATTAGTT+GGG + chr3_1:60551452-60551471 Msa0366120:intron 15.0%
!!! AATGAAAATTTTCATATCAT+AGG - chr3_1:60552795-60552814 None:intergenic 15.0%
!! ATAACTACATAATTGTTATA+CGG + chr3_1:60554314-60554333 Msa0366120:intron 15.0%
!!! GAAATATGTTTTTTCATAAA+GGG - chr3_1:60554713-60554732 None:intergenic 15.0%
!!! TGAAATATGTTTTTTCATAA+AGG - chr3_1:60554714-60554733 None:intergenic 15.0%
!! AAAATTATATGAATCTTTGA+CGG + chr3_1:60554747-60554766 Msa0366120:intron 15.0%
!! AAAAAAAAACCTACAAATAT+GGG + chr3_1:60554884-60554903 Msa0366120:intron 15.0%
!!! CATATCTATAATACAATTTT+AGG - chr3_1:60555534-60555553 None:intergenic 15.0%
!!! ATATTTTTTATTCATGACAC+AGG + chr3_1:60551307-60551326 Msa0366120:intron 20.0%
!!! ATCGTTATTTTTTTGCTTAT+TGG - chr3_1:60551376-60551395 None:intergenic 20.0%
!! TTAAAACATTTATACACGAA+AGG + chr3_1:60551610-60551629 Msa0366120:intron 20.0%
!!! TGATGGTAGTTTTTAATTTA+AGG + chr3_1:60552031-60552050 Msa0366120:intron 20.0%
!!! GATGGTAGTTTTTAATTTAA+GGG + chr3_1:60552032-60552051 Msa0366120:intron 20.0%
!!! TAAATGCTATTTCACAAATT+CGG + chr3_1:60552057-60552076 Msa0366120:intron 20.0%
!!! TTCAAGTTATTGATATTTAG+AGG + chr3_1:60552464-60552483 Msa0366120:intron 20.0%
!! AACATGTAATAATCAAAACA+AGG - chr3_1:60552749-60552768 None:intergenic 20.0%
!! AATTGATGCAATAAAATCTA+AGG + chr3_1:60553185-60553204 Msa0366120:CDS 20.0%
!!! TTTCAATGAGTCTTTTTTTT+TGG + chr3_1:60553359-60553378 Msa0366120:intron 20.0%
!! ATATTCTCAAATGGTAATAA+TGG - chr3_1:60553763-60553782 None:intergenic 20.0%
!!! ATACCCTTTTTATTAAACAA+TGG + chr3_1:60553863-60553882 Msa0366120:intron 20.0%
!!! TTAATTTGTATTTTGTAGCT+TGG + chr3_1:60553922-60553941 Msa0366120:intron 20.0%
!!! ATTAATCTTTTTGTCTCTTT+TGG + chr3_1:60554171-60554190 Msa0366120:intron 20.0%
!!! TTCTTTTTTTCTTAATTGCA+TGG - chr3_1:60554400-60554419 None:intergenic 20.0%
!! AAAAGAAAAAATAACTAGCA+AGG + chr3_1:60554580-60554599 Msa0366120:intron 20.0%
!!! ATAAAACTGTTTTATCTACA+TGG - chr3_1:60554788-60554807 None:intergenic 20.0%
!! GAAAAAAAAACCTACAAATA+TGG + chr3_1:60554883-60554902 Msa0366120:intron 20.0%
!!! TCTATTCATGATATTTTATG+TGG + chr3_1:60554922-60554941 Msa0366120:intron 20.0%
!!! TTCTTCAAGTTAAAATATAG+TGG + chr3_1:60555393-60555412 Msa0366120:three_prime_UTR 20.0%
!! TGAAATAAATTATCATCACA+AGG + chr3_1:60555434-60555453 Msa0366120:three_prime_UTR 20.0%
!! GAAATAAATTATCATCACAA+GGG + chr3_1:60555435-60555454 Msa0366120:three_prime_UTR 20.0%
!! TATTATGGATATGTATAAAG+TGG + chr3_1:60555464-60555483 Msa0366120:three_prime_UTR 20.0%
! AGCAATGCAATATAAGAATT+AGG - chr3_1:60551010-60551029 None:intergenic 25.0%
!! TTCTTATATTGCATTGCTTT+TGG + chr3_1:60551012-60551031 Msa0366120:CDS 25.0%
!!! TGCACTGTTTTAAAAACTTT+AGG - chr3_1:60551100-60551119 None:intergenic 25.0%
! TTTATCTTTCAATGGTAGAT+TGG + chr3_1:60551256-60551275 Msa0366120:intron 25.0%
! TTGACATTGAACTTATACTT+AGG - chr3_1:60551509-60551528 None:intergenic 25.0%
!!! CGTTATTCTTTGAAATTTGA+AGG + chr3_1:60551807-60551826 Msa0366120:intron 25.0%
!!! ATATTCTATGCTTGTTTTGA+TGG - chr3_1:60551972-60551991 None:intergenic 25.0%
! GAGAAAAATGATTCAATTGA+TGG + chr3_1:60552014-60552033 Msa0366120:intron 25.0%
!!! AAATGCTATTTCACAAATTC+GGG + chr3_1:60552058-60552077 Msa0366120:intron 25.0%
! ACATATGCTTTCTTGAATTA+AGG + chr3_1:60552201-60552220 Msa0366120:intron 25.0%
! AAAATACTCGAAACCTAAAA+TGG - chr3_1:60552271-60552290 None:intergenic 25.0%
! TAAAATTACCGAAAACCTAA+TGG + chr3_1:60552540-60552559 Msa0366120:intron 25.0%
! CTCACTTTAATCTTTAATGA+TGG + chr3_1:60552586-60552605 Msa0366120:intron 25.0%
! AAAAAGTAACCAAAAGAACA+AGG - chr3_1:60552683-60552702 None:intergenic 25.0%
! AGATGTAAAACTACTAGTAA+CGG - chr3_1:60553571-60553590 None:intergenic 25.0%
!!! TTACTAGTAGTTTTACATCT+TGG + chr3_1:60553571-60553590 Msa0366120:intron 25.0%
! TTTACATCTTGGTTGTAAAT+CGG + chr3_1:60553582-60553601 Msa0366120:intron 25.0%
!!! ATTCATAATTAGTTTGCAGT+AGG - chr3_1:60553629-60553648 None:intergenic 25.0%
!! ACTTTCTTCTACAACTTTTT+CGG - chr3_1:60553728-60553747 None:intergenic 25.0%
! TTGTAGAAGAAAGTCTAATT+AGG + chr3_1:60553734-60553753 Msa0366120:intron 25.0%
! TATTACCATTTGAGAATATG+AGG + chr3_1:60553764-60553783 Msa0366120:intron 25.0%
! GGACCATTGTTTAATAAAAA+GGG - chr3_1:60553869-60553888 None:intergenic 25.0%
! TGGACCATTGTTTAATAAAA+AGG - chr3_1:60553870-60553889 None:intergenic 25.0%
! TTTAAAAGTTGAGATAAGGT+TGG - chr3_1:60554049-60554068 None:intergenic 25.0%
! ACATCCTTGATTAATATTAG+TGG - chr3_1:60554248-60554267 None:intergenic 25.0%
! TCCATAATGATTTCTATGAT+TGG + chr3_1:60554461-60554480 Msa0366120:intron 25.0%
! CCATAATGATTTCTATGATT+GGG + chr3_1:60554462-60554481 Msa0366120:intron 25.0%
! GAAATAAAAATGGTTGTTAG+TGG - chr3_1:60554508-60554527 None:intergenic 25.0%
!! TGATATTTTATGTGGTTTTC+AGG + chr3_1:60554930-60554949 Msa0366120:intron 25.0%
! TAATTGTTGTCAAAATGAGT+TGG - chr3_1:60555113-60555132 None:intergenic 25.0%
! AAGAATCTCATTATCAAAAG+AGG + chr3_1:60555137-60555156 Msa0366120:CDS 25.0%
!! AATTTTGCAAATGCAAATCA+AGG - chr3_1:60555496-60555515 None:intergenic 25.0%
! TCTAGCTTCACTTGAAAATA+TGG + chr3_1:60550976-60550995 Msa0366120:exon 30.0%
!! TTTTGGTCTTCCTTCTTATA+GGG + chr3_1:60551029-60551048 Msa0366120:CDS 30.0%
TGCTTATAAATAGAGACAGT+CGG + chr3_1:60551712-60551731 Msa0366120:intron 30.0%
GAGCAAAAGACTATTTAAGT+CGG - chr3_1:60551950-60551969 None:intergenic 30.0%
AAATCTCCTCATCATACAAA+TGG - chr3_1:60552432-60552451 None:intergenic 30.0%
! TTTACGTGTGCATCTTTTTA+GGG - chr3_1:60552524-60552543 None:intergenic 30.0%
! TTTTACGTGTGCATCTTTTT+AGG - chr3_1:60552525-60552544 None:intergenic 30.0%
!!! AAATTTGAGCCTTGTTCTTT+TGG + chr3_1:60552671-60552690 Msa0366120:intron 30.0%
! TGCTGCTTGAAAAACAAAAT+AGG + chr3_1:60553068-60553087 Msa0366120:intron 30.0%
GCTGCTTGAAAAACAAAATA+GGG + chr3_1:60553069-60553088 Msa0366120:intron 30.0%
AAAACAAAATAGGGTTGTGA+TGG + chr3_1:60553078-60553097 Msa0366120:intron 30.0%
AAACAAAATAGGGTTGTGAT+GGG + chr3_1:60553079-60553098 Msa0366120:intron 30.0%
TGATGCAATAAAATCTAAGG+TGG + chr3_1:60553188-60553207 Msa0366120:CDS 30.0%
ACTCTACTAACACTGAATTA+GGG + chr3_1:60553299-60553318 Msa0366120:intron 30.0%
GTCATATTTGCACAAAATTG+TGG - chr3_1:60553412-60553431 None:intergenic 30.0%
!!! TTCTACAACTTTTTCGGATT+TGG - chr3_1:60553722-60553741 None:intergenic 30.0%
! ATTAGCCTCATATTCTCAAA+TGG - chr3_1:60553772-60553791 None:intergenic 30.0%
TCTTAGCTAAACAAACACAA+GGG + chr3_1:60553793-60553812 Msa0366120:intron 30.0%
! ATTTGTATTTTGTAGCTTGG+AGG + chr3_1:60553925-60553944 Msa0366120:intron 30.0%
!! CTTTTTGGAAGGTAAAAGTT+GGG + chr3_1:60553950-60553969 Msa0366120:CDS 30.0%
!! GAGCTTTAAAAGTTGAGATA+AGG - chr3_1:60554053-60554072 None:intergenic 30.0%
!!! ATCTCAACTTTTAAAGCTCA+AGG + chr3_1:60554054-60554073 Msa0366120:CDS 30.0%
! AATCTTTTTGTCTCTTTTGG+AGG + chr3_1:60554174-60554193 Msa0366120:intron 30.0%
! ATCTTTTTGTCTCTTTTGGA+GGG + chr3_1:60554175-60554194 Msa0366120:intron 30.0%
CCTTGATTAATATTAGTGGT+TGG - chr3_1:60554244-60554263 None:intergenic 30.0%
CCAACCACTAATATTAATCA+AGG + chr3_1:60554241-60554260 Msa0366120:intron 30.0%
CCCAATCATAGAAATCATTA+TGG - chr3_1:60554465-60554484 None:intergenic 30.0%
CAATAATGTCCCATATTTGT+AGG - chr3_1:60554896-60554915 None:intergenic 30.0%
! ACAGTACATTTGCTAAGATA+AGG + chr3_1:60555021-60555040 Msa0366120:CDS 30.0%
!! AGTTTTAACAAGTGAATCAG+TGG - chr3_1:60555201-60555220 None:intergenic 30.0%
! AATCAAAGGTCTTTTCATTC+TGG - chr3_1:60555229-60555248 None:intergenic 30.0%
! CTTTGATTCTGATTTTGTAG+CGG + chr3_1:60555241-60555260 Msa0366120:CDS 30.0%
GAGATAATAAGCCTTTAACT+GGG + chr3_1:60555279-60555298 Msa0366120:CDS 30.0%
ATGGATATGTATAAAGTGGA+AGG + chr3_1:60555468-60555487 Msa0366120:three_prime_UTR 30.0%
!! CTTTTGGTCTTCCTTCTTAT+AGG + chr3_1:60551028-60551047 Msa0366120:CDS 35.0%
CTGAAGAAATCCCTATAAGA+AGG - chr3_1:60551042-60551061 None:intergenic 35.0%
TGGTGTAAGTGTGTAGTAAA+TGG + chr3_1:60551338-60551357 Msa0366120:intron 35.0%
GCTTATAAATAGAGACAGTC+GGG + chr3_1:60551713-60551732 Msa0366120:intron 35.0%
CATTGACCATTTGTATGATG+AGG + chr3_1:60552423-60552442 Msa0366120:intron 35.0%
! CTTTCAAGCCATTAGGTTTT+CGG - chr3_1:60552551-60552570 None:intergenic 35.0%
ATATGACCTTTCAAGCCATT+AGG - chr3_1:60552558-60552577 None:intergenic 35.0%
GATAGATAGATACATGCACA+TGG + chr3_1:60552615-60552634 Msa0366120:intron 35.0%
GACATTACTTGAAGTCTTGA+AGG - chr3_1:60552650-60552669 None:intergenic 35.0%
ACATGTTATACACATGCACA+AGG + chr3_1:60552762-60552781 Msa0366120:intron 35.0%
!!! TGCAGTTTTTTCTCCTTTGA+AGG - chr3_1:60553130-60553149 None:intergenic 35.0%
CTAATTCAGTGTTAGTAGAG+TGG - chr3_1:60553300-60553319 None:intergenic 35.0%
CACTCTACTAACACTGAATT+AGG + chr3_1:60553298-60553317 Msa0366120:intron 35.0%
ACTAACACTGAATTAGGGTT+AGG + chr3_1:60553304-60553323 Msa0366120:intron 35.0%
ATGCTACTGCAATTCAATTG+TGG + chr3_1:60553434-60553453 Msa0366120:intron 35.0%
! ACATTTTGCACTCTAGATCA+TGG - chr3_1:60553480-60553499 None:intergenic 35.0%
ATTATGAATGATTACGACCG+TGG + chr3_1:60553640-60553659 Msa0366120:intron 35.0%
CTCTTAGCTAAACAAACACA+AGG + chr3_1:60553792-60553811 Msa0366120:intron 35.0%
! AGGGTATAGCATTACTCTTT+TGG - chr3_1:60553850-60553869 None:intergenic 35.0%
! CCAACTTTTACCTTCCAAAA+AGG - chr3_1:60553952-60553971 None:intergenic 35.0%
!! CCTTTTTGGAAGGTAAAAGT+TGG + chr3_1:60553949-60553968 Msa0366120:CDS 35.0%
! AAGTTGAGATAAGGTTGGTT+AGG - chr3_1:60554044-60554063 None:intergenic 35.0%
GATGAACACATCATCTCAAT+TGG - chr3_1:60554440-60554459 None:intergenic 35.0%
AAATGGTTGTTAGTGGTAGT+TGG - chr3_1:60554501-60554520 None:intergenic 35.0%
GCTACATGTATGAATCTTGT+TGG - chr3_1:60554639-60554658 None:intergenic 35.0%
! AGCCAAGTGTCTGTAATTTT+TGG + chr3_1:60554656-60554675 Msa0366120:intron 35.0%
! GCCAAGTGTCTGTAATTTTT+GGG + chr3_1:60554657-60554676 Msa0366120:intron 35.0%
! CCAAGTGTCTGTAATTTTTG+GGG + chr3_1:60554658-60554677 Msa0366120:intron 35.0%
GATGATGAAGAAGAAGAAGA+AGG + chr3_1:60554861-60554880 Msa0366120:intron 35.0%
TCTGATCAAGTACTCTTCAA+TGG + chr3_1:60555170-60555189 Msa0366120:CDS 35.0%
CGCTACAAAATCAGAATCAA+AGG - chr3_1:60555243-60555262 None:intergenic 35.0%
TGTAGCGGCAATAATTAAGA+TGG + chr3_1:60555256-60555275 Msa0366120:CDS 35.0%
GTAGCGGCAATAATTAAGAT+GGG + chr3_1:60555257-60555276 Msa0366120:CDS 35.0%
GGAGATAATAAGCCTTTAAC+TGG + chr3_1:60555278-60555297 Msa0366120:CDS 35.0%
TTGTAGGAGCTTGAATTAGA+AGG + chr3_1:60555325-60555344 Msa0366120:exon 35.0%
TGTAGGAGCTTGAATTAGAA+GGG + chr3_1:60555326-60555345 Msa0366120:exon 35.0%
!! TCACAAGGGTTGATGTATTA+TGG + chr3_1:60555449-60555468 Msa0366120:three_prime_UTR 35.0%
GCAGTCTGTTGTTAAAACTG+CGG + chr3_1:60551117-60551136 Msa0366120:CDS 40.0%
GTTGCCAAAGAAAATCGCAT+CGG + chr3_1:60551139-60551158 Msa0366120:CDS 40.0%
TTACATCAACAAAGCAGTCG+TGG - chr3_1:60551189-60551208 None:intergenic 40.0%
TCATGACACAGGAAAAACTG+TGG + chr3_1:60551318-60551337 Msa0366120:intron 40.0%
AGTGTGTAGTAAATGGCTGT+TGG + chr3_1:60551345-60551364 Msa0366120:intron 40.0%
! AATTAAGGTGTCCTCTTGAG+TGG + chr3_1:60552216-60552235 Msa0366120:intron 40.0%
GTAGCATACATGTGCTATGT+AGG - chr3_1:60552399-60552418 None:intergenic 40.0%
!! TGTGCATCTTTTTAGGGACA+AGG - chr3_1:60552518-60552537 None:intergenic 40.0%
CGAAAACCTAATGGCTTGAA+AGG + chr3_1:60552549-60552568 Msa0366120:intron 40.0%
AGATACATGCACATGGATGA+TGG + chr3_1:60552622-60552641 Msa0366120:intron 40.0%
CTTTAATAGCCCATCTGAGT+TGG + chr3_1:60552836-60552855 Msa0366120:intron 40.0%
ACCTCGTAAGCTAATACTAC+CGG - chr3_1:60552862-60552881 None:intergenic 40.0%
! CCTCTCACAGAATTGTTGTT+AGG - chr3_1:60553156-60553175 None:intergenic 40.0%
CCTAACAACAATTCTGTGAG+AGG + chr3_1:60553153-60553172 Msa0366120:CDS 40.0%
AACAGAATCACGAGCAGTAA+TGG - chr3_1:60553256-60553275 None:intergenic 40.0%
! ACCGTGGATTTGAAATCTGA+CGG + chr3_1:60553656-60553675 Msa0366120:intron 40.0%
TCTGACGGCATGAATATGTA+AGG + chr3_1:60553671-60553690 Msa0366120:intron 40.0%
CTGACGGCATGAATATGTAA+GGG + chr3_1:60553672-60553691 Msa0366120:intron 40.0%
AAGTTGGGAGAAGAGATTCA+AGG + chr3_1:60553965-60553984 Msa0366120:CDS 40.0%
AATTTCACTGCTGCAAACAC+TGG + chr3_1:60553994-60554013 Msa0366120:CDS 40.0%
ATTTCACTGCTGCAAACACT+GGG + chr3_1:60553995-60554014 Msa0366120:CDS 40.0%
! AGGTTGGTTAGGTTAGATGT+AGG - chr3_1:60554033-60554052 None:intergenic 40.0%
AGATAAAGCAACCATGTCCT+TGG - chr3_1:60554088-60554107 None:intergenic 40.0%
! AAGGACATGGTTGCTTTATC+TGG + chr3_1:60554087-60554106 Msa0366120:CDS 40.0%
AGGGAGACACGATTTAGTTA+TGG + chr3_1:60554194-60554213 Msa0366120:intron 40.0%
CCCCAAAAATTACAGACACT+TGG - chr3_1:60554661-60554680 None:intergenic 40.0%
!! AAAGCAGTTGAGCGGATTTT+TGG + chr3_1:60554683-60554702 Msa0366120:intron 40.0%
!! TTTTCAGGAGCTCACACAAT+AGG + chr3_1:60554945-60554964 Msa0366120:intron 40.0%
TTTCAGGAGCTCACACAATA+GGG + chr3_1:60554946-60554965 Msa0366120:intron 40.0%
TGTTGCTGTCGTTGTATATG+TGG - chr3_1:60554998-60555017 None:intergenic 40.0%
GATCAAGTACTCTTCAATGG+TGG + chr3_1:60555173-60555192 Msa0366120:CDS 40.0%
AAGCCTTTAACTGGGAAACA+AGG + chr3_1:60555287-60555306 Msa0366120:CDS 40.0%
AGCCTTTAACTGGGAAACAA+GGG + chr3_1:60555288-60555307 Msa0366120:CDS 40.0%
GGGAGATTAGGAAGAATTGT+AGG + chr3_1:60555309-60555328 Msa0366120:CDS 40.0%
! TGCTCCGATGCGATTTTCTT+TGG - chr3_1:60551146-60551165 None:intergenic 45.0%
!! AGTGGTGTGGTGTGTTACTT+TGG + chr3_1:60552234-60552253 Msa0366120:intron 45.0%
AACCTAAAATGGCTACCGTC+TGG - chr3_1:60552260-60552279 None:intergenic 45.0%
! TTTGACGTGTGCAGTTGGTA+TGG - chr3_1:60552495-60552514 None:intergenic 45.0%
! GTGCTCCTCTTCAAGGTATT+AGG + chr3_1:60552888-60552907 Msa0366120:intron 45.0%
CTCGACCTAATACCTTGAAG+AGG - chr3_1:60552896-60552915 None:intergenic 45.0%
GATGACACTTCGTCCTTCAA+AGG + chr3_1:60553114-60553133 Msa0366120:CDS 45.0%
! GGTCTCATGTGCTGATATAG+TGG + chr3_1:60553230-60553249 Msa0366120:CDS 45.0%
GCCGTCAGATTTCAAATCCA+CGG - chr3_1:60553660-60553679 None:intergenic 45.0%
! TGTAGCTTGGAGGTCCTTTT+TGG + chr3_1:60553935-60553954 Msa0366120:intron 45.0%
TTTCACTGCTGCAAACACTG+GGG + chr3_1:60553996-60554015 Msa0366120:CDS 45.0%
GTTAGGTTAGATGTAGGAGC+TGG - chr3_1:60554027-60554046 None:intergenic 45.0%
TTGGGGTTAAAGCAGTTGAG+CGG + chr3_1:60554675-60554694 Msa0366120:intron 45.0%
GCAAGGTGTACAAGTTTCAG+AGG + chr3_1:60554972-60554991 Msa0366120:CDS 45.0%
AAGAACTGCCCTAGAACAAG+TGG + chr3_1:60555047-60555066 Msa0366120:CDS 45.0%
GCCTTTAACTGGGAAACAAG+GGG + chr3_1:60555289-60555308 Msa0366120:CDS 45.0%
! TCCCCTTGTTTCCCAGTTAA+AGG - chr3_1:60555293-60555312 None:intergenic 45.0%
!!! AAAACAAAATAAATATATTT+TGG - chr3_1:60553890-60553909 None:intergenic 5.0%
AGTCGTGGAAGAAGAGACGA+AGG - chr3_1:60551174-60551193 None:intergenic 50.0%
AACACACCACACCACTCAAG+AGG - chr3_1:60552230-60552249 None:intergenic 50.0%
!! GGTGTGTTACTTTGGCCAGA+CGG + chr3_1:60552242-60552261 Msa0366120:intron 50.0%
CAAGGTTTGACGTGTGCAGT+TGG - chr3_1:60552500-60552519 None:intergenic 50.0%
! AATAGCCCATCTGAGTTGGC+CGG + chr3_1:60552840-60552859 Msa0366120:intron 50.0%
TACTACCGGCCAACTCAGAT+GGG - chr3_1:60552848-60552867 None:intergenic 50.0%
ATACTACCGGCCAACTCAGA+TGG - chr3_1:60552849-60552868 None:intergenic 50.0%
! GCCGGTAGTATTAGCTTACG+AGG + chr3_1:60552858-60552877 Msa0366120:intron 50.0%
! TGAGAGTGTGCTCCTCTTCA+AGG + chr3_1:60552881-60552900 Msa0366120:intron 50.0%
AAGGTGGAAGCAATATGCCC+TGG + chr3_1:60553204-60553223 Msa0366120:CDS 50.0%
! GCTTGGAGGTCCTTTTTGGA+AGG + chr3_1:60553939-60553958 Msa0366120:intron 50.0%
AGCTCAAGGACTTTCTGCCA+AGG + chr3_1:60554068-60554087 Msa0366120:CDS 50.0%
AGGACTTTCTGCCAAGGACA+TGG + chr3_1:60554074-60554093 Msa0366120:CDS 50.0%
CTCACACAATAGGGAGAGCA+AGG + chr3_1:60554955-60554974 Msa0366120:CDS 50.0%
CTCCTGAGCCACTTGTTCTA+GGG - chr3_1:60555058-60555077 None:intergenic 50.0%
TCTCCTGAGCCACTTGTTCT+AGG - chr3_1:60555059-60555078 None:intergenic 50.0%
CTGGGAAACAAGGGGAGATT+AGG + chr3_1:60555297-60555316 Msa0366120:CDS 50.0%
AGGTGTCCTCTTGAGTGGTG+TGG + chr3_1:60552221-60552240 Msa0366120:intron 55.0%
!! GGCCAGACGGTAGCCATTTT+AGG + chr3_1:60552255-60552274 Msa0366120:intron 55.0%
GGAAGCAATATGCCCTGGTG+TGG + chr3_1:60553209-60553228 Msa0366120:CDS 55.0%
CAGCACATGAGACCACACCA+GGG - chr3_1:60553224-60553243 None:intergenic 55.0%
TCAGCACATGAGACCACACC+AGG - chr3_1:60553225-60553244 None:intergenic 55.0%
GGCATCCTTGAGTCGTTGCA+CGG + chr3_1:60553693-60553712 Msa0366120:intron 55.0%
GGATTCCGTGCAACGACTCA+AGG - chr3_1:60553701-60553720 None:intergenic 55.0%
TGCCCTAGAACAAGTGGCTC+AGG + chr3_1:60555053-60555072 Msa0366120:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 60550909 60555559 60550909 ID=Msa0366120;Name=Msa0366120
chr3_1 mRNA 60550909 60555559 60550909 ID=Msa0366120-mRNA-1;Parent=Msa0366120;Name=Msa0366120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=86|1|1|1|1|1|4|216|320
chr3_1 exon 60550909 60551204 60550909 ID=Msa0366120-mRNA-1:exon:11672;Parent=Msa0366120-mRNA-1
chr3_1 exon 60553090 60553281 60553090 ID=Msa0366120-mRNA-1:exon:11673;Parent=Msa0366120-mRNA-1
chr3_1 exon 60553940 60554108 60553940 ID=Msa0366120-mRNA-1:exon:11674;Parent=Msa0366120-mRNA-1
chr3_1 exon 60554952 60555559 60554952 ID=Msa0366120-mRNA-1:exon:11675;Parent=Msa0366120-mRNA-1
chr3_1 five_prime_UTR 60550909 60550994 60550909 ID=Msa0366120-mRNA-1:five_prime_utr;Parent=Msa0366120-mRNA-1
chr3_1 CDS 60550995 60551204 60550995 ID=Msa0366120-mRNA-1:cds;Parent=Msa0366120-mRNA-1
chr3_1 CDS 60553090 60553281 60553090 ID=Msa0366120-mRNA-1:cds;Parent=Msa0366120-mRNA-1
chr3_1 CDS 60553940 60554108 60553940 ID=Msa0366120-mRNA-1:cds;Parent=Msa0366120-mRNA-1
chr3_1 CDS 60554952 60555343 60554952 ID=Msa0366120-mRNA-1:cds;Parent=Msa0366120-mRNA-1
chr3_1 three_prime_UTR 60555344 60555559 60555344 ID=Msa0366120-mRNA-1:three_prime_utr;Parent=Msa0366120-mRNA-1
Gene Sequence

>Msa0366120

ATGGCACATTCTCCTAATTCTTATATTGCATTGCTTTTGGTCTTCCTTCTTATAGGGATTTCTTCAGCTCAACTTTCTGAGAACTTTTATTCTAAGAAATGTCCTAAAGTTTTTAAAACAGTGCAGTCTGTTGTTAAAACTGCGGTTGCCAAAGAAAATCGCATCGGAGCATCTCTCCTTCGTCTCTTCTTCCACGACTGCTTTGTTGATGGTTGTGATGGGTCAATACTACTTGATGACACTTCGTCCTTCAAAGGAGAAAAAACTGCAGCTCCTAACAACAATTCTGTGAGAGGTTATGAAGTAATTGATGCAATAAAATCTAAGGTGGAAGCAATATGCCCTGGTGTGGTCTCATGTGCTGATATAGTGGCCATTACTGCTCGTGATTCTGTTGTGATTCTTGGAGGTCCTTTTTGGAAGGTAAAAGTTGGGAGAAGAGATTCAAGGACAGCTAATTTCACTGCTGCAAACACTGGGGTGATTCCAGCTCCTACATCTAACCTAACCAACCTTATCTCAACTTTTAAAGCTCAAGGACTTTCTGCCAAGGACATGGTTGCTTTATCTGGAGCTCACACAATAGGGAGAGCAAGGTGTACAAGTTTCAGAGGCCACATATACAACGACAGCAACATTGACAGTACATTTGCTAAGATAAGGCAAAAGAACTGCCCTAGAACAAGTGGCTCAGGAGACAACAATCTAGCAAATCTAGACTTGAGAACTCCAACTCATTTTGACAACAATTACTACAAGAATCTCATTATCAAAAGAGGACTACTTCATTCTGATCAAGTACTCTTCAATGGTGGAACCACTGATTCACTTGTTAAAACTTATAGCCAGAATGAAAAGACCTTTGATTCTGATTTTGTAGCGGCAATAATTAAGATGGGAGATAATAAGCCTTTAACTGGGAAACAAGGGGAGATTAGGAAGAATTGTAGGAGCTTGAATTAG

Protein sequence

>Msa0366120

MAHSPNSYIALLLVFLLIGISSAQLSENFYSKKCPKVFKTVQSVVKTAVAKENRIGASLLRLFFHDCFVDGCDGSILLDDTSSFKGEKTAAPNNNSVRGYEVIDAIKSKVEAICPGVVSCADIVAITARDSVVILGGPFWKVKVGRRDSRTANFTAANTGVIPAPTSNLTNLISTFKAQGLSAKDMVALSGAHTIGRARCTSFRGHIYNDSNIDSTFAKIRQKNCPRTSGSGDNNLANLDLRTPTHFDNNYYKNLIIKRGLLHSDQVLFNGGTTDSLVKTYSQNEKTFDSDFVAAIIKMGDNKPLTGKQGEIRKNCRSLN*