AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0058140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058140 MtrunA17_Chr1g0156491 96.835 158 4 1 1 158 1 157 3.71e-110 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0058140 AT1G75690.1 75.497 151 34 3 8 158 7 154 2.61e-78 229

Find 56 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGACCTATGTAAAATTT+TGG 0.155475 1_2:+14402552 Msa0058140:three_prime_UTR
AATGAGTTTACCATCTTAAA+TGG 0.198461 1_2:+14402696 Msa0058140:three_prime_UTR
AGATTGAGGGGCACTGATTT+TGG 0.211384 1_2:+14402399 Msa0058140:three_prime_UTR
GGGCTGCGTGTTATCTCTTT+TGG 0.263030 1_2:-14401092 None:intergenic
TGCTTCCCATGCAATGGTTC+TGG 0.280691 1_2:+14401115 Msa0058140:CDS
ATGTACTCATTCAATTTCTT+TGG 0.295039 1_2:+14402439 Msa0058140:three_prime_UTR
GTGACAGCTTCACCACTAAA+TGG 0.355591 1_2:+14400530 Msa0058140:five_prime_UTR
TAGGCATAGTTACTTTCTCC+TGG 0.364821 1_2:-14402639 None:intergenic
CGTGGATAAAATGTGGGTTT+TGG 0.374056 1_2:-14400754 None:intergenic
TTGAGTGTGGCTGTTGGAAT+TGG 0.393770 1_2:+14400924 Msa0058140:CDS
CAAAATTCAATCTTTACAAC+AGG 0.416741 1_2:-14402602 None:intergenic
AGAACCATTGCATGGGAAGC+AGG 0.424768 1_2:-14401113 None:intergenic
AAGTTCAACAGTCACATTAC+CGG 0.426738 1_2:-14402084 None:intergenic
CAGGTAGTTGCTATAACTGT+TGG 0.428401 1_2:+14400897 Msa0058140:intron
AACTAAGTGTTGAATGTGTT+AGG 0.436200 1_2:-14400603 None:intergenic
AGTGAACATCATCCATTTAG+TGG 0.454830 1_2:-14400542 None:intergenic
TTTAAGAGGAGAAGAAAGAA+AGG 0.455802 1_2:-14400689 None:intergenic
GTTATGTTGACGCTTTCATT+TGG 0.461625 1_2:+14402492 Msa0058140:three_prime_UTR
GTAGTAGATAAGGATTTAAG+AGG 0.469567 1_2:-14400703 None:intergenic
TGTACAACTTGTCAAGGATC+TGG 0.478203 1_2:+14402167 Msa0058140:CDS
AGGCATAGTTACTTTCTCCT+GGG 0.485729 1_2:-14402638 None:intergenic
AGGGAGTGGCCTAATATCAT+TGG 0.501462 1_2:-14402528 None:intergenic
CTGAGAGAAGCTAAGATTGA+GGG 0.505701 1_2:+14402386 Msa0058140:exon
TTTAATACGTGGATAAAATG+TGG 0.513316 1_2:-14400761 None:intergenic
AGAAAGGTGGAATGTAATTG+AGG 0.514748 1_2:-14400673 None:intergenic
TTTGTTGTGCATATGGCCCC+AGG 0.518457 1_2:+14402621 Msa0058140:three_prime_UTR
TAATTGTGTAGTAGTAGATA+AGG 0.518803 1_2:-14400713 None:intergenic
TTAATACGTGGATAAAATGT+GGG 0.525605 1_2:-14400760 None:intergenic
AAGAGGAGAAGAAAGAAAGG+TGG 0.539027 1_2:-14400686 None:intergenic
ATAATATCAGCCATTTAAGA+TGG 0.540295 1_2:-14402706 None:intergenic
ACTGAGAGAAGCTAAGATTG+AGG 0.542735 1_2:+14402385 Msa0058140:exon
CAGCCCTGCTTCCCATGCAA+TGG 0.546625 1_2:+14401109 Msa0058140:CDS
GAACACCGTACCTACGATCA+AGG 0.554130 1_2:-14402205 None:intergenic
ACATAGGTCATGAAAGGGAG+TGG 0.557258 1_2:-14402542 None:intergenic
AACAACGGTGATAGTTATGT+AGG 0.558549 1_2:-14402658 None:intergenic
GGTAATGTGACTGTTGAACT+TGG 0.571939 1_2:+14402086 Msa0058140:CDS
GAACCATTGCATGGGAAGCA+GGG 0.571952 1_2:-14401112 None:intergenic
TTGACATGTACAACTTGTCA+AGG 0.577016 1_2:+14402161 Msa0058140:CDS
TGAACTTGGTGGAGCTGAGA+CGG 0.581832 1_2:+14402100 Msa0058140:CDS
CTGCATAAATTGTGATGGTG+CGG 0.586364 1_2:+14402133 Msa0058140:CDS
TGCATAAATTGTGATGGTGC+GGG 0.591712 1_2:+14402134 Msa0058140:CDS
CGAGCTCCAGAACCATTGCA+TGG 0.592093 1_2:-14401121 None:intergenic
GGCATAGTTACTTTCTCCTG+GGG 0.597615 1_2:-14402637 None:intergenic
TCTCGCTGCATAAATTGTGA+TGG 0.600927 1_2:+14402128 Msa0058140:CDS
ATTTGCGATTCATAAAACAC+TGG 0.613193 1_2:-14400951 None:intergenic
GTGTTGAATGTGTTAGGCAA+TGG 0.621072 1_2:-14400597 None:intergenic
ACTTGGTGGAGCTGAGACGG+AGG 0.632275 1_2:+14402103 Msa0058140:CDS
AGTTCAAGAGCTTTAATACG+TGG 0.639758 1_2:-14400772 None:intergenic
AACCTCGTTACCTTGATCGT+AGG 0.640316 1_2:+14402195 Msa0058140:CDS
GCTGTCACAACCACATGACA+TGG 0.642254 1_2:-14400515 None:intergenic
GAGCTCCAGAACCATTGCAT+GGG 0.645320 1_2:-14401120 None:intergenic
AATGTGACTGTTGAACTTGG+TGG 0.646977 1_2:+14402089 Msa0058140:CDS
TGAGAGAAGCTAAGATTGAG+GGG 0.652158 1_2:+14402387 Msa0058140:exon
TCTTGAACTTGATCAAAACA+CGG 0.674004 1_2:+14400786 Msa0058140:CDS
ATAACTTTGATAGTTATATG+CGG 0.700584 1_2:-14402474 None:intergenic
TACCTACGATCAAGGTAACG+AGG 0.728545 1_2:-14402197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATAGTAATAAATAAA+TGG - chr1_2:14401001-14401020 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG - chr1_2:14401827-14401846 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG - chr1_2:14402242-14402261 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG - chr1_2:14402243-14402262 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG - chr1_2:14402244-14402263 None:intergenic 10.0%
!! ATGATATAGTAATAAATAAA+TGG - chr1_2:14401001-14401020 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG - chr1_2:14401827-14401846 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG - chr1_2:14402242-14402261 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG - chr1_2:14402243-14402262 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG - chr1_2:14402244-14402263 None:intergenic 10.0%
!! TATATCATATAATAATGTGT+TGG + chr1_2:14401013-14401032 Msa0058140:intron 15.0%
!!! TGGATAAGTTTTTTTTTTAT+AGG + chr1_2:14401413-14401432 Msa0058140:intron 15.0%
!! AAGTTAAATTATATAACTTC+TGG + chr1_2:14401597-14401616 Msa0058140:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG + chr1_2:14401869-14401888 Msa0058140:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG - chr1_2:14401876-14401895 None:intergenic 15.0%
!! TATATCATATAATAATGTGT+TGG + chr1_2:14401013-14401032 Msa0058140:intron 15.0%
!!! TGGATAAGTTTTTTTTTTAT+AGG + chr1_2:14401413-14401432 Msa0058140:intron 15.0%
!! AAGTTAAATTATATAACTTC+TGG + chr1_2:14401597-14401616 Msa0058140:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG + chr1_2:14401869-14401888 Msa0058140:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG - chr1_2:14401876-14401895 None:intergenic 15.0%
!! TGAATGAATGAATAAGAAAT+AGG - chr1_2:14400828-14400847 None:intergenic 20.0%
!! CTGCAACAAATTAAAAAAAA+AGG - chr1_2:14401071-14401090 None:intergenic 20.0%
!!! CTTTTTTTTTAATTTGTTGC+AGG + chr1_2:14401069-14401088 Msa0058140:intron 20.0%
!!! ACACTTTATACTTTTATGAA+TGG + chr1_2:14401178-14401197 Msa0058140:intron 20.0%
!!! CTATAAGCATATAAACTTTT+TGG - chr1_2:14401383-14401402 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG + chr1_2:14401381-14401400 Msa0058140:intron 20.0%
!!! AGTTTTTTTTTTATAGGTAG+TGG + chr1_2:14401419-14401438 Msa0058140:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG + chr1_2:14401560-14401579 Msa0058140:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG - chr1_2:14402027-14402046 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+CGG - chr1_2:14402477-14402496 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG + chr1_2:14402519-14402538 Msa0058140:three_prime_UTR 20.0%
!! TACAAAAACATAATCAACAA+CGG - chr1_2:14402676-14402695 None:intergenic 20.0%
!! TGAATGAATGAATAAGAAAT+AGG - chr1_2:14400828-14400847 None:intergenic 20.0%
!! CTGCAACAAATTAAAAAAAA+AGG - chr1_2:14401071-14401090 None:intergenic 20.0%
!!! CTTTTTTTTTAATTTGTTGC+AGG + chr1_2:14401069-14401088 Msa0058140:intron 20.0%
!!! ACACTTTATACTTTTATGAA+TGG + chr1_2:14401178-14401197 Msa0058140:intron 20.0%
!!! CTATAAGCATATAAACTTTT+TGG - chr1_2:14401383-14401402 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG + chr1_2:14401381-14401400 Msa0058140:intron 20.0%
!!! AGTTTTTTTTTTATAGGTAG+TGG + chr1_2:14401419-14401438 Msa0058140:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG + chr1_2:14401560-14401579 Msa0058140:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG - chr1_2:14402027-14402046 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+CGG - chr1_2:14402477-14402496 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG + chr1_2:14402519-14402538 Msa0058140:three_prime_UTR 20.0%
!! TACAAAAACATAATCAACAA+CGG - chr1_2:14402676-14402695 None:intergenic 20.0%
! TAATTGTGTAGTAGTAGATA+AGG - chr1_2:14400716-14400735 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG - chr1_2:14400763-14400782 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG - chr1_2:14400764-14400783 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG - chr1_2:14400825-14400844 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG + chr1_2:14401181-14401200 Msa0058140:intron 25.0%
! CTCACAAGTTATTGTTAATT+TGG + chr1_2:14401220-14401239 Msa0058140:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG + chr1_2:14401317-14401336 Msa0058140:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG + chr1_2:14402284-14402303 Msa0058140:intron 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG - chr1_2:14402327-14402346 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG + chr1_2:14402439-14402458 Msa0058140:three_prime_UTR 25.0%
!! ATTTTACATAGGTCATGAAA+GGG - chr1_2:14402550-14402569 None:intergenic 25.0%
!! AATTTTACATAGGTCATGAA+AGG - chr1_2:14402551-14402570 None:intergenic 25.0%
!! TCATGACCTATGTAAAATTT+TGG + chr1_2:14402552-14402571 Msa0058140:three_prime_UTR 25.0%
!! CAAACACCAAAATTTTACAT+AGG - chr1_2:14402561-14402580 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG - chr1_2:14402605-14402624 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG + chr1_2:14402614-14402633 Msa0058140:three_prime_UTR 25.0%
! AATGAGTTTACCATCTTAAA+TGG + chr1_2:14402696-14402715 Msa0058140:three_prime_UTR 25.0%
! ATAATATCAGCCATTTAAGA+TGG - chr1_2:14402709-14402728 None:intergenic 25.0%
! TAATTGTGTAGTAGTAGATA+AGG - chr1_2:14400716-14400735 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG - chr1_2:14400763-14400782 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG - chr1_2:14400764-14400783 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG - chr1_2:14400825-14400844 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG + chr1_2:14401181-14401200 Msa0058140:intron 25.0%
! CTCACAAGTTATTGTTAATT+TGG + chr1_2:14401220-14401239 Msa0058140:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG + chr1_2:14401317-14401336 Msa0058140:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG + chr1_2:14402284-14402303 Msa0058140:intron 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG - chr1_2:14402327-14402346 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG + chr1_2:14402439-14402458 Msa0058140:three_prime_UTR 25.0%
!! ATTTTACATAGGTCATGAAA+GGG - chr1_2:14402550-14402569 None:intergenic 25.0%
!! AATTTTACATAGGTCATGAA+AGG - chr1_2:14402551-14402570 None:intergenic 25.0%
!! TCATGACCTATGTAAAATTT+TGG + chr1_2:14402552-14402571 Msa0058140:three_prime_UTR 25.0%
!! CAAACACCAAAATTTTACAT+AGG - chr1_2:14402561-14402580 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG - chr1_2:14402605-14402624 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG + chr1_2:14402614-14402633 Msa0058140:three_prime_UTR 25.0%
! AATGAGTTTACCATCTTAAA+TGG + chr1_2:14402696-14402715 Msa0058140:three_prime_UTR 25.0%
! ATAATATCAGCCATTTAAGA+TGG - chr1_2:14402709-14402728 None:intergenic 25.0%
AAAAACATAACCATGTCATG+TGG + chr1_2:14400505-14400524 Msa0058140:five_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG - chr1_2:14400606-14400625 None:intergenic 30.0%
TTTAAGAGGAGAAGAAAGAA+AGG - chr1_2:14400692-14400711 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG - chr1_2:14400706-14400725 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG + chr1_2:14400786-14400805 Msa0058140:CDS 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG + chr1_2:14400878-14400897 Msa0058140:intron 30.0%
ATTTGCGATTCATAAAACAC+TGG - chr1_2:14400954-14400973 None:intergenic 30.0%
TTGCTTATAGGTAGTGTTTA+TGG + chr1_2:14401572-14401591 Msa0058140:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG - chr1_2:14402002-14402021 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG - chr1_2:14402059-14402078 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG + chr1_2:14402058-14402077 Msa0058140:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG + chr1_2:14402059-14402078 Msa0058140:intron 30.0%
AAAAACATAACCATGTCATG+TGG + chr1_2:14400505-14400524 Msa0058140:five_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG - chr1_2:14400606-14400625 None:intergenic 30.0%
TTTAAGAGGAGAAGAAAGAA+AGG - chr1_2:14400692-14400711 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG - chr1_2:14400706-14400725 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG + chr1_2:14400786-14400805 Msa0058140:CDS 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG + chr1_2:14400878-14400897 Msa0058140:intron 30.0%
ATTTGCGATTCATAAAACAC+TGG - chr1_2:14400954-14400973 None:intergenic 30.0%
TTGCTTATAGGTAGTGTTTA+TGG + chr1_2:14401572-14401591 Msa0058140:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG - chr1_2:14402002-14402021 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG - chr1_2:14402059-14402078 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG + chr1_2:14402058-14402077 Msa0058140:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG + chr1_2:14402059-14402078 Msa0058140:intron 30.0%
AGTGAACATCATCCATTTAG+TGG - chr1_2:14400545-14400564 None:intergenic 35.0%
AGAAAGGTGGAATGTAATTG+AGG - chr1_2:14400676-14400695 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG - chr1_2:14400775-14400794 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG + chr1_2:14401191-14401210 Msa0058140:intron 35.0%
ATGTTGTAGTGTAATGTGCA+AGG + chr1_2:14401286-14401305 Msa0058140:intron 35.0%
CTAAAAGCTAATTCAAACGC+TGG - chr1_2:14401312-14401331 None:intergenic 35.0%
! ATGCTAGCTTGAACAATCAT+TGG - chr1_2:14401542-14401561 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG + chr1_2:14401732-14401751 Msa0058140:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG + chr1_2:14401733-14401752 Msa0058140:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG + chr1_2:14401986-14402005 Msa0058140:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG - chr1_2:14402087-14402106 None:intergenic 35.0%
TTGACATGTACAACTTGTCA+AGG + chr1_2:14402161-14402180 Msa0058140:CDS 35.0%
CGCCAAATGACAAATTATCA+TGG - chr1_2:14402289-14402308 None:intergenic 35.0%
GTTATGTTGACGCTTTCATT+TGG + chr1_2:14402492-14402511 Msa0058140:three_prime_UTR 35.0%
AACAACGGTGATAGTTATGT+AGG - chr1_2:14402661-14402680 None:intergenic 35.0%
AGTGAACATCATCCATTTAG+TGG - chr1_2:14400545-14400564 None:intergenic 35.0%
AGAAAGGTGGAATGTAATTG+AGG - chr1_2:14400676-14400695 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG - chr1_2:14400775-14400794 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG + chr1_2:14401191-14401210 Msa0058140:intron 35.0%
ATGTTGTAGTGTAATGTGCA+AGG + chr1_2:14401286-14401305 Msa0058140:intron 35.0%
CTAAAAGCTAATTCAAACGC+TGG - chr1_2:14401312-14401331 None:intergenic 35.0%
! ATGCTAGCTTGAACAATCAT+TGG - chr1_2:14401542-14401561 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG + chr1_2:14401732-14401751 Msa0058140:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG + chr1_2:14401733-14401752 Msa0058140:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG + chr1_2:14401986-14402005 Msa0058140:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG - chr1_2:14402087-14402106 None:intergenic 35.0%
TTGACATGTACAACTTGTCA+AGG + chr1_2:14402161-14402180 Msa0058140:CDS 35.0%
CGCCAAATGACAAATTATCA+TGG - chr1_2:14402289-14402308 None:intergenic 35.0%
GTTATGTTGACGCTTTCATT+TGG + chr1_2:14402492-14402511 Msa0058140:three_prime_UTR 35.0%
AACAACGGTGATAGTTATGT+AGG - chr1_2:14402661-14402680 None:intergenic 35.0%
GTGTTGAATGTGTTAGGCAA+TGG - chr1_2:14400600-14400619 None:intergenic 40.0%
AAGAGGAGAAGAAAGAAAGG+TGG - chr1_2:14400689-14400708 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG - chr1_2:14400757-14400776 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG + chr1_2:14400897-14400916 Msa0058140:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG + chr1_2:14400911-14400930 Msa0058140:CDS 40.0%
ATGCTTATAGGCAGTGTTTG+TGG + chr1_2:14401393-14401412 Msa0058140:intron 40.0%
GGAAAGAGACTCTGGTAATA+TGG + chr1_2:14401480-14401499 Msa0058140:intron 40.0%
GACTCTGGTAATATGGAGTT+CGG + chr1_2:14401487-14401506 Msa0058140:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG + chr1_2:14401492-14401511 Msa0058140:intron 40.0%
GCGATGCTTATGATTGTGTT+TGG + chr1_2:14401924-14401943 Msa0058140:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG - chr1_2:14401960-14401979 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG + chr1_2:14402065-14402084 Msa0058140:CDS 40.0%
GGTAATGTGACTGTTGAACT+TGG + chr1_2:14402086-14402105 Msa0058140:CDS 40.0%
AATGTGACTGTTGAACTTGG+TGG + chr1_2:14402089-14402108 Msa0058140:CDS 40.0%
TCTCGCTGCATAAATTGTGA+TGG + chr1_2:14402128-14402147 Msa0058140:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG + chr1_2:14402133-14402152 Msa0058140:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG + chr1_2:14402134-14402153 Msa0058140:CDS 40.0%
TGTACAACTTGTCAAGGATC+TGG + chr1_2:14402167-14402186 Msa0058140:CDS 40.0%
ACTGAGAGAAGCTAAGATTG+AGG + chr1_2:14402385-14402404 Msa0058140:exon 40.0%
CTGAGAGAAGCTAAGATTGA+GGG + chr1_2:14402386-14402405 Msa0058140:exon 40.0%
TGAGAGAAGCTAAGATTGAG+GGG + chr1_2:14402387-14402406 Msa0058140:exon 40.0%
! AGGCATAGTTACTTTCTCCT+GGG - chr1_2:14402641-14402660 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG - chr1_2:14402642-14402661 None:intergenic 40.0%
GTGTTGAATGTGTTAGGCAA+TGG - chr1_2:14400600-14400619 None:intergenic 40.0%
AAGAGGAGAAGAAAGAAAGG+TGG - chr1_2:14400689-14400708 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG - chr1_2:14400757-14400776 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG + chr1_2:14400897-14400916 Msa0058140:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG + chr1_2:14400911-14400930 Msa0058140:CDS 40.0%
ATGCTTATAGGCAGTGTTTG+TGG + chr1_2:14401393-14401412 Msa0058140:intron 40.0%
GGAAAGAGACTCTGGTAATA+TGG + chr1_2:14401480-14401499 Msa0058140:intron 40.0%
GACTCTGGTAATATGGAGTT+CGG + chr1_2:14401487-14401506 Msa0058140:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG + chr1_2:14401492-14401511 Msa0058140:intron 40.0%
GCGATGCTTATGATTGTGTT+TGG + chr1_2:14401924-14401943 Msa0058140:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG - chr1_2:14401960-14401979 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG + chr1_2:14402065-14402084 Msa0058140:CDS 40.0%
GGTAATGTGACTGTTGAACT+TGG + chr1_2:14402086-14402105 Msa0058140:CDS 40.0%
AATGTGACTGTTGAACTTGG+TGG + chr1_2:14402089-14402108 Msa0058140:CDS 40.0%
TCTCGCTGCATAAATTGTGA+TGG + chr1_2:14402128-14402147 Msa0058140:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG + chr1_2:14402133-14402152 Msa0058140:CDS 40.0%
! TGCATAAATTGTGATGGTGC+GGG + chr1_2:14402134-14402153 Msa0058140:CDS 40.0%
TGTACAACTTGTCAAGGATC+TGG + chr1_2:14402167-14402186 Msa0058140:CDS 40.0%
ACTGAGAGAAGCTAAGATTG+AGG + chr1_2:14402385-14402404 Msa0058140:exon 40.0%
CTGAGAGAAGCTAAGATTGA+GGG + chr1_2:14402386-14402405 Msa0058140:exon 40.0%
TGAGAGAAGCTAAGATTGAG+GGG + chr1_2:14402387-14402406 Msa0058140:exon 40.0%
! AGGCATAGTTACTTTCTCCT+GGG - chr1_2:14402641-14402660 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG - chr1_2:14402642-14402661 None:intergenic 40.0%
GTGACAGCTTCACCACTAAA+TGG + chr1_2:14400530-14400549 Msa0058140:five_prime_UTR 45.0%
TTGAGTGTGGCTGTTGGAAT+TGG + chr1_2:14400924-14400943 Msa0058140:CDS 45.0%
!! TGAATGGAGGAGCATTATGG+AGG + chr1_2:14401194-14401213 Msa0058140:intron 45.0%
TCTTAACCGTCATGTTCTCG+AGG + chr1_2:14401458-14401477 Msa0058140:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG + chr1_2:14401459-14401478 Msa0058140:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG - chr1_2:14401467-14401486 None:intergenic 45.0%
CTGGTAATATGGAGTTCGGT+TGG + chr1_2:14401491-14401510 Msa0058140:intron 45.0%
! TGTGTTTGGTTGCTTTGTGC+CGG + chr1_2:14401938-14401957 Msa0058140:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG + chr1_2:14402195-14402214 Msa0058140:CDS 45.0%
TACCTACGATCAAGGTAACG+AGG - chr1_2:14402200-14402219 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG + chr1_2:14402200-14402219 Msa0058140:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG + chr1_2:14402399-14402418 Msa0058140:three_prime_UTR 45.0%
AGGGAGTGGCCTAATATCAT+TGG - chr1_2:14402531-14402550 None:intergenic 45.0%
ACATAGGTCATGAAAGGGAG+TGG - chr1_2:14402545-14402564 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG - chr1_2:14402640-14402659 None:intergenic 45.0%
GTGACAGCTTCACCACTAAA+TGG + chr1_2:14400530-14400549 Msa0058140:five_prime_UTR 45.0%
TTGAGTGTGGCTGTTGGAAT+TGG + chr1_2:14400924-14400943 Msa0058140:CDS 45.0%
!! TGAATGGAGGAGCATTATGG+AGG + chr1_2:14401194-14401213 Msa0058140:intron 45.0%
TCTTAACCGTCATGTTCTCG+AGG + chr1_2:14401458-14401477 Msa0058140:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG + chr1_2:14401459-14401478 Msa0058140:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG - chr1_2:14401467-14401486 None:intergenic 45.0%
CTGGTAATATGGAGTTCGGT+TGG + chr1_2:14401491-14401510 Msa0058140:intron 45.0%
! TGTGTTTGGTTGCTTTGTGC+CGG + chr1_2:14401938-14401957 Msa0058140:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG + chr1_2:14402195-14402214 Msa0058140:CDS 45.0%
TACCTACGATCAAGGTAACG+AGG - chr1_2:14402200-14402219 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG + chr1_2:14402200-14402219 Msa0058140:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG + chr1_2:14402399-14402418 Msa0058140:three_prime_UTR 45.0%
AGGGAGTGGCCTAATATCAT+TGG - chr1_2:14402531-14402550 None:intergenic 45.0%
ACATAGGTCATGAAAGGGAG+TGG - chr1_2:14402545-14402564 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG - chr1_2:14402640-14402659 None:intergenic 45.0%
!!! TTATTATTTTAACTTTTTAT+CGG + chr1_2:14401669-14401688 Msa0058140:intron 5.0%
!!! TTATTATTTTAACTTTTTAT+CGG + chr1_2:14401669-14401688 Msa0058140:intron 5.0%
GCTGTCACAACCACATGACA+TGG - chr1_2:14400518-14400537 None:intergenic 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG + chr1_2:14400918-14400937 Msa0058140:CDS 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG - chr1_2:14401095-14401114 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG - chr1_2:14401115-14401134 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG - chr1_2:14401116-14401135 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG + chr1_2:14401115-14401134 Msa0058140:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG - chr1_2:14401123-14401142 None:intergenic 50.0%
TTCTCGAGGGAAAGAGACTC+TGG + chr1_2:14401472-14401491 Msa0058140:intron 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG + chr1_2:14401740-14401759 Msa0058140:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG + chr1_2:14401743-14401762 Msa0058140:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG + chr1_2:14401953-14401972 Msa0058140:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG + chr1_2:14402100-14402119 Msa0058140:CDS 50.0%
GAACACCGTACCTACGATCA+AGG - chr1_2:14402208-14402227 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG + chr1_2:14402621-14402640 Msa0058140:three_prime_UTR 50.0%
GCTGTCACAACCACATGACA+TGG - chr1_2:14400518-14400537 None:intergenic 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG + chr1_2:14400918-14400937 Msa0058140:CDS 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG - chr1_2:14401095-14401114 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG - chr1_2:14401115-14401134 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG - chr1_2:14401116-14401135 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG + chr1_2:14401115-14401134 Msa0058140:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG - chr1_2:14401123-14401142 None:intergenic 50.0%
TTCTCGAGGGAAAGAGACTC+TGG + chr1_2:14401472-14401491 Msa0058140:intron 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG + chr1_2:14401740-14401759 Msa0058140:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG + chr1_2:14401743-14401762 Msa0058140:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG + chr1_2:14401953-14401972 Msa0058140:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG + chr1_2:14402100-14402119 Msa0058140:CDS 50.0%
GAACACCGTACCTACGATCA+AGG - chr1_2:14402208-14402227 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG + chr1_2:14402621-14402640 Msa0058140:three_prime_UTR 50.0%
CGAGCTCCAGAACCATTGCA+TGG - chr1_2:14401124-14401143 None:intergenic 55.0%
CGAGCTCCAGAACCATTGCA+TGG - chr1_2:14401124-14401143 None:intergenic 55.0%
CAGCCCTGCTTCCCATGCAA+TGG + chr1_2:14401109-14401128 Msa0058140:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG + chr1_2:14402103-14402122 Msa0058140:CDS 60.0%
CAGCCCTGCTTCCCATGCAA+TGG + chr1_2:14401109-14401128 Msa0058140:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG + chr1_2:14402103-14402122 Msa0058140:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 14400504 14402742 14400504 ID=Msa0058140;Name=Msa0058140
chr1_2 mRNA 14400504 14402742 14400504 ID=Msa0058140-mRNA-1;Parent=Msa0058140;Name=Msa0058140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=142|1|1|1|0.5|0.6|5|353|158
chr1_2 exon 14400504 14400807 14400504 ID=Msa0058140-mRNA-1:exon:5775;Parent=Msa0058140-mRNA-1
chr1_2 exon 14400900 14400983 14400900 ID=Msa0058140-mRNA-1:exon:5776;Parent=Msa0058140-mRNA-1
chr1_2 exon 14401091 14401142 14401091 ID=Msa0058140-mRNA-1:exon:5777;Parent=Msa0058140-mRNA-1
chr1_2 exon 14402060 14402216 14402060 ID=Msa0058140-mRNA-1:exon:5778;Parent=Msa0058140-mRNA-1
chr1_2 exon 14402368 14402742 14402368 ID=Msa0058140-mRNA-1:exon:5779;Parent=Msa0058140-mRNA-1
chr1_2 five_prime_UTR 14400504 14400645 14400504 ID=Msa0058140-mRNA-1:five_prime_utr;Parent=Msa0058140-mRNA-1
chr1_2 CDS 14400646 14400807 14400646 ID=Msa0058140-mRNA-1:cds;Parent=Msa0058140-mRNA-1
chr1_2 CDS 14400900 14400983 14400900 ID=Msa0058140-mRNA-1:cds;Parent=Msa0058140-mRNA-1
chr1_2 CDS 14401091 14401142 14401091 ID=Msa0058140-mRNA-1:cds;Parent=Msa0058140-mRNA-1
chr1_2 CDS 14402060 14402216 14402060 ID=Msa0058140-mRNA-1:cds;Parent=Msa0058140-mRNA-1
chr1_2 CDS 14402368 14402389 14402368 ID=Msa0058140-mRNA-1:cds;Parent=Msa0058140-mRNA-1
chr1_2 three_prime_UTR 14402390 14402742 14402390 ID=Msa0058140-mRNA-1:three_prime_utr;Parent=Msa0058140-mRNA-1
Gene Sequence

>Msa0058140

ATGACAATATCTTATTCACTTTCACTTCCTCAATTACATTCCACCTTTCTTTCTTCTCCTCTTAAATCCTTATCTACTACTACACAATTAGCTAGAAATAAATTTCAACCAAAACCCACATTTTATCCACGTATTAAAGCTCTTGAACTTGATCAAAACACGGTAGTTGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATACCAGTGTTTTATGAATCGCAAATTGATAATGCTGCCAAAAGAGATAACACGCAGCCCTGCTTCCCATGCAATGGTTCTGGAGCTCAGAAATGCAGATTTTGTTTGGGAACCGGTAATGTGACTGTTGAACTTGGTGGAGCTGAGACGGAGGTCTCTCGCTGCATAAATTGTGATGGTGCGGGTTCATTGACATGTACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGACTGA

Protein sequence

>Msa0058140

MTISYSLSLPQLHSTFLSSPLKSLSTTTQLARNKFQPKPTFYPRIKALELDQNTVVAITVGVLSVAVGIGIPVFYESQIDNAAKRDNTQPCFPCNGSGAQKCRFCLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD*