AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0561760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561760 MtrunA17_Chr4g0052411 99.856 694 1 0 1 694 1 694 0.0 1400
Msa0561760 MtrunA17_Chr2g0297281 85.612 695 94 5 1 694 61 750 0.0 1149
Msa0561760 MtrunA17_Chr7g0217421 85.440 364 53 0 219 582 29 392 0.0 648
Msa0561760 MtrunA17_Chr3g0143721 51.031 582 271 6 96 672 124 696 0.0 551
Msa0561760 MtrunA17_Chr1g0158881 50.000 450 203 4 230 677 330 759 1.42e-135 417
Msa0561760 MtrunA17_Chr7g0260601 44.275 524 257 12 182 688 196 701 4.65e-135 413
Msa0561760 MtrunA17_Chr4g0031821 47.788 452 218 8 229 674 320 759 4.31e-132 409
Msa0561760 MtrunA17_Chr6g0476861 46.352 466 228 8 216 672 184 636 3.80e-131 402
Msa0561760 MtrunA17_Chr8g0362771 47.109 467 221 7 215 674 224 671 6.13e-129 398
Msa0561760 MtrunA17_Chr7g0248361 44.556 496 241 11 188 672 159 631 2.26e-127 392
Msa0561760 MtrunA17_Chr3g0135721 46.903 452 220 6 227 674 222 657 3.61e-127 393
Msa0561760 MtrunA17_Chr3g0135761 46.930 456 220 7 223 674 218 655 2.39e-124 385
Msa0561760 MtrunA17_Chr5g0429571 49.453 457 214 9 211 651 290 745 1.13e-123 387
Msa0561760 MtrunA17_Chr3g0104211 46.243 519 234 15 153 646 233 731 1.33e-121 381
Msa0561760 MtrunA17_Chr3g0094871 44.420 448 223 8 229 672 11 436 8.81e-121 367
Msa0561760 MtrunA17_Chr5g0432631 45.435 460 228 8 222 674 220 663 1.18e-120 380
Msa0561760 MtrunA17_Chr5g0432641 41.810 464 243 8 219 673 179 624 2.03e-110 348
Msa0561760 MtrunA17_Chr8g0388371 36.167 600 306 18 146 692 311 886 2.37e-99 325
Msa0561760 MtrunA17_Chr2g0331161 40.564 461 240 8 223 673 409 845 3.51e-92 305
Msa0561760 MtrunA17_Chr1g0168321 41.076 409 184 9 189 590 132 490 1.67e-91 294
Msa0561760 MtrunA17_Chr6g0456351 46.491 342 163 5 151 489 253 577 6.21e-86 282
Msa0561760 MtrunA17_Chr3g0129971 39.446 469 251 8 214 667 280 730 1.18e-80 273
Msa0561760 MtrunA17_Chr8g0357301 34.310 478 269 11 246 686 487 956 5.26e-74 258
Msa0561760 MtrunA17_Chr5g0432391 33.857 446 217 10 227 665 50 424 3.30e-64 219
Msa0561760 MtrunA17_Chr3g0135781 58.659 179 64 3 215 390 42 213 4.74e-63 209
Msa0561760 MtrunA17_Chr8g0345461 39.405 269 162 1 210 477 146 414 1.25e-61 212
Msa0561760 MtrunA17_Chr4g0050561 42.276 246 140 2 230 473 157 402 9.49e-61 209
Msa0561760 MtrunA17_Chr1g0192151 38.235 272 167 1 210 480 148 419 1.50e-60 209
Msa0561760 MtrunA17_Chr4g0014731 38.235 272 167 1 210 480 149 420 2.20e-60 208
Msa0561760 MtrunA17_Chr1g0200081 39.405 269 161 2 210 477 156 423 9.69e-60 207
Msa0561760 MtrunA17_Chr1g0182711 40.816 245 144 1 230 473 189 433 1.49e-56 199
Msa0561760 MtrunA17_Chr7g0262801 40.816 245 144 1 230 473 188 432 3.66e-56 197
Msa0561760 MtrunA17_Chr2g0327121 47.577 227 115 3 229 454 207 430 1.10e-54 201
Msa0561760 MtrunA17_Chr2g0327121 39.623 265 147 4 225 478 478 740 2.25e-53 197
Msa0561760 MtrunA17_Chr7g0264521 42.424 231 130 2 225 454 477 705 6.40e-54 198
Msa0561760 MtrunA17_Chr7g0264521 46.256 227 118 3 229 454 206 429 4.20e-53 196
Msa0561760 MtrunA17_Chr1g0180791 46.696 227 117 3 229 454 205 428 1.19e-53 197
Msa0561760 MtrunA17_Chr1g0180791 42.424 231 130 2 225 454 476 704 8.45e-53 195
Msa0561760 MtrunA17_Chr7g0255651 44.934 227 124 1 229 454 282 508 4.45e-53 192
Msa0561760 MtrunA17_Chr7g0255651 33.333 222 134 5 253 467 38 252 4.21e-23 104
Msa0561760 MtrunA17_Chr3g0145011 40.693 231 136 1 228 457 138 368 1.59e-52 186
Msa0561760 MtrunA17_Chr3g0141901 40.693 231 136 1 228 457 135 365 2.39e-52 186
Msa0561760 MtrunA17_Chr2g0277831 45.957 235 119 5 221 452 527 756 2.26e-50 188
Msa0561760 MtrunA17_Chr2g0277831 45.148 237 117 3 226 455 240 470 8.00e-46 175
Msa0561760 MtrunA17_Chr3g0108321 48.333 180 92 1 229 407 159 338 2.75e-50 179
Msa0561760 MtrunA17_Chr7g0255721 42.222 225 128 2 229 452 685 908 6.09e-48 182
Msa0561760 MtrunA17_Chr7g0255721 43.434 198 104 3 261 455 417 609 1.50e-34 141
Msa0561760 MtrunA17_Chr7g0255691 44.934 227 124 1 229 454 286 512 8.15e-48 177
Msa0561760 MtrunA17_Chr7g0255691 35.458 251 135 8 232 468 20 257 2.17e-27 117
Msa0561760 MtrunA17_Chr7g0255901 39.608 255 144 7 225 473 637 887 1.54e-45 174
Msa0561760 MtrunA17_Chr7g0255641 39.556 225 134 2 229 452 658 881 2.23e-45 174
Msa0561760 MtrunA17_Chr7g0255641 40.933 193 104 5 267 456 432 617 3.64e-31 130
Msa0561760 MtrunA17_Chr4g0043381 41.704 223 126 2 231 452 839 1058 3.03e-45 174
Msa0561760 MtrunA17_Chr3g0135791 35.793 271 158 4 422 690 8 264 1.16e-42 156
Msa0561760 MtrunA17_Chr1g0190401 28.657 499 283 12 229 664 677 1165 9.27e-42 164
Msa0561760 MtrunA17_Chr7g0217411 61.682 107 41 0 572 678 6 112 1.24e-41 147
Msa0561760 MtrunA17_Chr3g0086401 39.841 251 128 7 231 467 94 335 2.32e-41 160
Msa0561760 MtrunA17_Chr3g0086401 38.095 252 126 6 225 452 381 626 3.99e-40 157
Msa0561760 MtrunA17_Chr2g0321241 37.500 288 164 9 212 491 117 396 2.74e-41 156
Msa0561760 MtrunA17_Chr2g0327231 42.778 180 102 1 210 388 327 506 1.11e-40 156
Msa0561760 MtrunA17_Chr2g0327231 41.758 91 50 1 229 319 153 240 2.75e-14 76.3
Msa0561760 MtrunA17_Chr3g0086411 37.652 247 132 4 225 452 211 454 2.78e-40 154
Msa0561760 MtrunA17_Chr3g0086411 44.079 152 67 4 316 455 7 152 1.51e-23 105
Msa0561760 MtrunA17_Chr4g0026631 40.426 235 128 8 212 442 112 338 1.70e-39 151
Msa0561760 MtrunA17_Chr8g0387641 39.286 224 129 5 229 449 521 740 1.50e-38 153
Msa0561760 MtrunA17_Chr4g0004121 37.154 253 143 6 223 465 236 482 7.78e-38 148
Msa0561760 MtrunA17_Chr6g0462581 41.333 225 124 6 228 449 499 718 2.58e-37 149
Msa0561760 MtrunA17_Chr4g0033451 38.589 241 130 5 226 455 377 610 5.56e-37 149
Msa0561760 MtrunA17_Chr4g0038101 38.865 229 126 6 228 449 720 941 6.59e-37 148
Msa0561760 MtrunA17_Chr1g0195741 40.529 227 125 6 228 449 937 1158 2.31e-36 147
Msa0561760 MtrunA17_Chr3g0116131 40.343 233 128 7 223 449 895 1122 2.84e-36 147
Msa0561760 MtrunA17_Chr6g0459561 38.462 234 131 8 223 450 376 602 3.17e-36 145
Msa0561760 MtrunA17_Chr5g0397121 38.667 225 131 5 228 449 512 732 8.26e-36 144
Msa0561760 MtrunA17_Chr1g0202371 38.696 230 123 7 228 449 396 615 1.70e-35 143
Msa0561760 MtrunA17_Chr1g0202381 39.556 225 127 6 229 449 468 687 4.21e-35 142
Msa0561760 MtrunA17_Chr1g0195731 38.428 229 131 6 226 449 931 1154 5.45e-35 142
Msa0561760 MtrunA17_Chr3g0127431 37.339 233 131 6 229 454 84 308 1.85e-34 135
Msa0561760 MtrunA17_Chr4g0047411 38.605 215 118 4 254 455 202 415 3.16e-34 139
Msa0561760 MtrunA17_Chr1g0204031 38.596 228 131 6 229 452 557 779 4.97e-34 139
Msa0561760 MtrunA17_Chr4g0052271 37.190 242 136 8 225 460 117 348 4.81e-33 131
Msa0561760 MtrunA17_Chr3g0127401 32.881 295 168 9 226 506 78 356 2.66e-32 129
Msa0561760 MtrunA17_Chr6g0459541 34.884 258 132 9 223 450 36 287 2.89e-32 128
Msa0561760 MtrunA17_Chr2g0316851 35.714 238 131 6 231 455 596 824 5.99e-32 133
Msa0561760 MtrunA17_Chr7g0246111 36.797 231 136 6 228 454 211 435 1.47e-31 129
Msa0561760 MtrunA17_Chr7g0217431 50.435 115 56 1 94 208 75 188 2.39e-27 109
Msa0561760 MtrunA17_Chr6g0459551 38.860 193 105 7 223 412 96 278 5.78e-26 111
Msa0561760 MtrunA17_Chr2g0289231 33.333 237 132 9 226 448 294 518 5.56e-24 107
Msa0561760 MtrunA17_Chr3g0135741 37.121 132 82 1 422 552 6 137 1.94e-18 82.4
Msa0561760 MtrunA17_Chr6g0459531 29.661 236 122 10 223 450 61 260 1.18e-16 81.6
Msa0561760 MtrunA17_Chr5g0432671 39.048 105 59 2 428 531 2 102 2.71e-15 72.4
Msa0561760 MtrunA17_Chr8g0372701 33.146 178 103 6 229 399 222 390 4.88e-14 75.1
Msa0561760 MtrunA17_Chr4g0062081 42.169 83 46 2 227 307 5 87 2.63e-13 66.2
Msa0561760 MtrunA17_Chr3g0134831 27.723 202 116 6 219 399 30 222 9.17e-13 69.7
Msa0561760 MtrunA17_Chr8g0392971 35.052 97 61 2 438 532 51 147 2.63e-12 65.5
Msa0561760 MtrunA17_Chr2g0315971 29.282 181 112 6 226 399 192 363 6.73e-12 68.9
Msa0561760 MtrunA17_Chr2g0315971 28.729 181 114 6 226 399 468 640 4.39e-11 66.2
Msa0561760 MtrunA17_Chr2g0316041 26.702 191 119 6 221 399 129 310 9.16e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0561760 AT2G30950.1 86.047 688 82 9 1 684 1 678 0.0 1152
Msa0561760 AT2G30950.2 86.047 688 82 9 1 684 1 678 0.0 1152
Msa0561760 AT2G30950.3 86.047 688 82 9 1 684 1 678 0.0 1152
Msa0561760 AT2G30950.4 86.047 688 82 9 1 684 5 682 0.0 1152
Msa0561760 AT1G06430.1 84.180 689 86 7 1 684 1 671 0.0 1123
Msa0561760 AT1G06430.3 84.180 689 86 7 1 684 1 671 0.0 1123
Msa0561760 AT1G06430.2 84.180 689 86 7 1 684 1 671 0.0 1123
Msa0561760 AT5G15250.1 67.781 658 192 6 34 680 24 672 0.0 899
Msa0561760 AT5G15250.2 62.400 500 145 7 34 499 24 514 0.0 594
Msa0561760 AT5G42270.1 52.048 586 259 9 96 672 122 694 0.0 555
Msa0561760 AT1G50250.1 53.072 586 255 10 96 672 132 706 0.0 548
Msa0561760 AT5G53170.1 49.780 454 205 6 222 672 351 784 1.86e-134 415
Msa0561760 AT2G26140.1 45.331 514 250 7 189 694 187 677 4.22e-131 404
Msa0561760 AT1G07510.1 47.345 452 220 9 229 674 324 763 7.23e-131 406
Msa0561760 AT2G29080.1 47.672 451 221 8 229 674 319 759 1.31e-124 390
Msa0561760 AT3G47060.1 47.639 466 218 11 210 651 290 753 1.25e-121 382
Msa0561760 AT5G58870.1 47.899 476 224 11 229 692 326 789 5.34e-120 378
Msa0561760 AT4G23940.1 38.327 514 266 10 212 690 410 907 1.59e-99 327
Msa0561760 AT3G02450.1 49.695 328 146 4 151 476 267 577 1.32e-91 298
Msa0561760 AT3G16290.1 39.463 484 249 9 212 675 380 839 1.48e-90 301
Msa0561760 AT5G64580.1 37.630 481 267 8 214 679 297 759 1.33e-79 271
Msa0561760 AT1G79560.2 33.750 480 269 13 246 686 507 976 6.73e-68 241
Msa0561760 AT1G79560.1 33.750 480 269 13 246 686 507 976 8.39e-68 241
Msa0561760 AT1G79560.3 34.423 459 252 13 246 665 507 955 2.09e-66 236
Msa0561760 AT1G53750.1 39.405 269 162 1 210 477 146 414 1.77e-61 212
Msa0561760 AT3G05530.1 38.603 272 166 1 210 480 149 420 6.95e-61 210
Msa0561760 AT5G19990.2 42.276 246 140 2 230 473 101 346 1.26e-60 207
Msa0561760 AT5G19990.1 42.276 246 140 2 230 473 159 404 2.63e-60 209
Msa0561760 AT5G19990.3 42.276 246 140 2 230 473 159 404 2.63e-60 209
Msa0561760 AT5G20000.1 42.276 246 140 2 230 473 159 404 3.33e-60 208
Msa0561760 AT1G09100.1 37.868 272 168 1 210 480 148 419 5.49e-59 205
Msa0561760 AT5G58290.1 42.678 239 136 1 229 466 152 390 4.96e-58 202
Msa0561760 AT1G53780.3 38.662 269 164 1 210 477 317 585 9.48e-58 206
Msa0561760 AT1G53780.1 38.662 269 164 1 210 477 318 586 1.02e-57 206
Msa0561760 AT1G53780.4 38.662 269 164 1 210 477 318 586 1.02e-57 206
Msa0561760 AT1G53780.2 38.662 269 164 1 210 477 339 607 1.53e-57 206
Msa0561760 AT4G29040.1 40.000 245 146 1 230 473 186 430 2.81e-55 196
Msa0561760 AT2G20140.1 42.060 233 134 1 230 461 186 418 9.01e-55 194
Msa0561760 AT3G09840.1 45.679 243 126 4 229 470 204 441 7.08e-54 199
Msa0561760 AT3G09840.1 42.672 232 129 3 225 454 475 704 2.62e-49 186
Msa0561760 AT5G03340.1 45.679 243 126 4 229 470 204 441 1.01e-53 198
Msa0561760 AT5G03340.1 42.424 231 130 2 225 454 475 703 4.47e-53 196
Msa0561760 AT3G53230.1 42.424 231 130 2 225 454 476 704 1.05e-53 198
Msa0561760 AT3G53230.1 44.934 227 121 2 229 454 205 428 2.33e-52 194
Msa0561760 AT1G45000.1 41.739 230 133 1 229 457 136 365 1.43e-53 189
Msa0561760 AT5G43010.1 41.304 230 134 1 229 457 136 365 2.63e-53 189
Msa0561760 AT3G56690.1 44.000 225 124 2 229 452 721 944 1.72e-50 190
Msa0561760 AT3G56690.1 35.443 237 149 2 220 455 373 606 1.69e-38 154
Msa0561760 AT5G08470.1 38.971 272 155 3 231 494 843 1111 3.35e-46 177
Msa0561760 AT5G08470.3 38.971 272 155 3 231 494 834 1102 4.91e-46 177
Msa0561760 AT1G03000.1 38.462 273 156 7 225 489 653 921 3.93e-45 174
Msa0561760 AT3G01610.2 41.833 251 120 6 221 456 222 461 7.24e-44 169
Msa0561760 AT3G01610.2 41.975 243 133 5 212 452 510 746 2.62e-39 155
Msa0561760 AT3G01610.1 41.833 251 120 6 221 456 222 461 7.36e-44 169
Msa0561760 AT3G01610.1 41.975 243 133 5 212 452 510 746 2.42e-39 155
Msa0561760 AT2G03670.1 42.544 228 129 2 229 454 283 510 9.25e-44 167
Msa0561760 AT2G03670.1 33.465 254 151 5 233 475 23 269 5.20e-31 129
Msa0561760 AT1G05910.1 36.559 279 159 5 226 493 375 646 1.07e-40 160
Msa0561760 AT1G64110.5 38.934 244 139 6 228 468 515 751 1.08e-38 154
Msa0561760 AT1G64110.3 38.934 244 139 6 228 468 515 751 1.08e-38 154
Msa0561760 AT1G64110.2 38.934 244 139 6 228 468 517 753 1.08e-38 154
Msa0561760 AT1G64110.4 38.934 244 139 6 228 468 517 753 1.08e-38 154
Msa0561760 AT1G64110.1 38.934 244 139 6 228 468 512 748 1.13e-38 154
Msa0561760 AT3G04340.1 26.562 512 303 11 226 674 778 1279 2.59e-38 153
Msa0561760 AT4G28000.3 40.000 225 127 6 228 449 516 735 6.73e-38 151
Msa0561760 AT4G28000.1 40.000 225 127 6 228 449 514 733 7.19e-38 151
Msa0561760 AT4G28000.2 40.000 225 127 6 228 449 516 735 7.77e-38 151
Msa0561760 AT1G80350.1 38.431 255 137 8 223 465 230 476 1.37e-37 147
Msa0561760 AT2G27600.1 39.149 235 131 8 212 442 114 340 4.60e-37 144
Msa0561760 AT1G50140.3 39.301 229 125 6 228 449 710 931 1.12e-36 148
Msa0561760 AT1G50140.1 39.301 229 125 6 228 449 710 931 1.12e-36 148
Msa0561760 AT1G50140.4 39.301 229 125 6 228 449 710 931 1.12e-36 148
Msa0561760 AT1G50140.2 39.301 229 125 6 228 449 688 909 1.21e-36 148
Msa0561760 AT1G50140.5 39.301 229 125 6 228 449 688 909 1.21e-36 148
Msa0561760 AT4G02480.1 39.738 229 128 6 226 449 957 1180 6.69e-36 146
Msa0561760 AT5G52882.1 39.556 225 128 6 228 449 513 732 8.28e-36 145
Msa0561760 AT2G34560.1 38.136 236 133 7 226 455 97 325 1.57e-35 139
Msa0561760 AT2G34560.2 38.136 236 133 7 226 455 106 334 2.73e-35 138
Msa0561760 AT3G19740.1 37.109 256 137 7 211 449 673 921 2.89e-35 144
Msa0561760 AT1G02890.1 39.316 234 132 6 226 454 938 1166 6.67e-35 143
Msa0561760 AT3G27120.1 37.712 236 130 8 223 450 394 620 6.68e-34 138
Msa0561760 AT4G04910.1 38.140 215 119 4 254 455 239 452 6.97e-34 139
Msa0561760 AT3G15120.1 36.555 238 129 6 231 455 718 946 1.74e-33 139
Msa0561760 AT3G15120.2 36.555 238 129 6 231 455 728 956 1.79e-33 139
Msa0561760 AT2G45500.4 36.364 231 137 6 228 454 79 303 1.87e-33 132
Msa0561760 AT2G45500.3 36.364 231 137 6 228 454 79 303 1.87e-33 132
Msa0561760 AT4G27680.1 32.601 273 165 8 226 485 78 344 3.86e-33 132
Msa0561760 AT2G45500.2 36.364 231 137 6 228 454 212 436 8.88e-33 133
Msa0561760 AT2G45500.5 36.364 231 137 6 228 454 222 446 1.03e-32 133
Msa0561760 AT2G45500.1 36.364 231 137 6 228 454 216 440 1.18e-32 132
Msa0561760 AT2G03670.2 33.465 254 151 5 233 475 23 269 8.82e-32 129
Msa0561760 AT2G03670.2 41.429 140 80 2 229 366 283 422 4.36e-21 97.1
Msa0561760 AT5G53540.1 35.470 234 140 6 226 454 81 308 2.04e-31 127
Msa0561760 AT4G24860.3 38.053 226 130 6 229 449 815 1035 2.36e-31 132
Msa0561760 AT4G24860.1 38.053 226 130 6 229 449 817 1037 2.36e-31 132
Msa0561760 AT4G24860.4 38.053 226 130 6 229 449 790 1010 2.64e-31 131
Msa0561760 AT4G24860.2 38.053 226 130 6 229 449 813 1033 2.96e-31 131
Msa0561760 AT1G45000.2 41.007 139 81 1 229 366 136 274 8.69e-29 118
Msa0561760 AT1G62130.1 35.270 241 132 7 228 464 749 969 2.31e-28 122
Msa0561760 AT1G62130.2 35.270 241 132 7 228 464 742 962 2.56e-28 122
Msa0561760 AT4G04180.1 32.609 230 137 7 229 448 316 537 1.75e-25 112
Msa0561760 AT4G04180.2 32.609 230 137 7 229 448 311 532 1.82e-25 112
Msa0561760 AT5G08470.2 41.216 148 83 2 231 377 843 987 2.50e-25 112
Msa0561760 AT1G02890.2 35.193 233 115 7 226 454 938 1138 5.60e-24 108
Msa0561760 AT5G17760.1 30.168 179 108 5 230 399 217 387 3.36e-13 73.2
Msa0561760 AT2G18193.1 31.818 176 106 5 230 399 207 374 2.38e-12 70.5
Msa0561760 AT5G17740.1 28.333 180 109 5 230 397 209 380 1.81e-11 67.8

Find 209 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGTTTGCCGGCATTAT+TGG 0.190374 4_1:-61354774 Msa0561760:CDS
TTCGAGGTTTCTTGAGTATT+TGG 0.193224 4_1:-61354696 Msa0561760:CDS
TATTGGTCCTTGGTCACTTA+TGG 0.235513 4_1:-61352636 Msa0561760:CDS
GCAAGAATTGTTGGAGGATT+AGG 0.268443 4_1:-61353125 Msa0561760:CDS
CTGAAATTCCAGTTGAAAAT+CGG 0.283840 4_1:-61352379 Msa0561760:CDS
TGCAACCTATTTCCCAATTC+AGG 0.285706 4_1:+61354605 None:intergenic
AGCATGAACCTTTAGGATTT+CGG 0.289530 4_1:+61353697 None:intergenic
AACAAGGTCTTTCCAGTTCC+TGG 0.294212 4_1:+61354176 None:intergenic
ACATTTGGAATGTCTGATAT+TGG 0.298060 4_1:-61352653 Msa0561760:CDS
TGAGGCTGTGTCTCCTGAAT+TGG 0.304859 4_1:-61354618 Msa0561760:CDS
AAGAGCTTCTTCAGAAATTC+AGG 0.309999 4_1:-61354550 Msa0561760:CDS
TAAGATTGTGGAAGTCCTTC+TGG 0.311011 4_1:-61352453 Msa0561760:CDS
GTCGAGATGTTTGTTGGTAT+TGG 0.311803 4_1:-61354092 Msa0561760:CDS
GCTTTCCCTGCTGCTGTCAT+TGG 0.314297 4_1:-61354449 Msa0561760:CDS
TGTCTCCTGAATTGGGAAAT+AGG 0.315118 4_1:-61354610 Msa0561760:CDS
CAACTCTTTGCAAGAATTGT+TGG 0.316556 4_1:-61353134 Msa0561760:CDS
CGTGTTCGAGTTCAACTTCC+TGG 0.320835 4_1:-61354581 Msa0561760:CDS
GTTGGTTTGCCGGCATTATT+GGG 0.322430 4_1:-61354773 Msa0561760:CDS
TATTGTTAGCATGAACCTTT+AGG 0.322618 4_1:+61353690 None:intergenic
TCGTTGTTGCTGCAACTAAC+AGG 0.334524 4_1:-61353881 Msa0561760:CDS
AGTAGTTCTATTACTGTTTG+TGG 0.337219 4_1:+61354955 None:intergenic
ATAGAATCATCAATCTCTTT+AGG 0.348661 4_1:+61353536 None:intergenic
CTCGAGGCGGTCCGGTGGAA+TGG 0.358005 4_1:-61354411 Msa0561760:CDS
AAATGTCGGTGTTGGTTTGC+CGG 0.361800 4_1:-61354783 Msa0561760:CDS
TTGCAGATGGTAGTCACATT+TGG 0.362813 4_1:-61352668 Msa0561760:intron
CCAAAAGGAGTTCTTCTTGT+TGG 0.368691 4_1:-61354203 Msa0561760:CDS
TCGAGGCGGTCCGGTGGAAT+GGG 0.369632 4_1:-61354410 Msa0561760:CDS
CTTGTTGGTCCTCCAGGAAC+TGG 0.369928 4_1:-61354188 Msa0561760:CDS
TACATACAGGCCATTCAAAC+AGG 0.371825 4_1:+61352329 None:intergenic
CCAACAAGAAGAACTCCTTT+TGG 0.377297 4_1:+61354203 None:intergenic
TCGGTCCTTCCCCTTACATC+TGG 0.380555 4_1:+61353716 None:intergenic
GTTCTTCTTGTTGGTCCTCC+AGG 0.385102 4_1:-61354194 Msa0561760:CDS
AGATGTGTTGAAACAAACTA+TGG 0.385438 4_1:+61352145 None:intergenic
CGGTTGATGTTCCAGATGTA+AGG 0.391954 4_1:-61353727 Msa0561760:CDS
TTTGAAACTTGGCTTTAGAT+TGG 0.395241 4_1:+61354351 None:intergenic
AAACCTCGAATACGACATTC+TGG 0.396169 4_1:+61354709 None:intergenic
TTGTTAGCCAAGGCTATTGC+TGG 0.396534 4_1:-61354158 Msa0561760:CDS
AGACAAAGAGGGACTGGAAT+TGG 0.397460 4_1:-61353984 Msa0561760:CDS
TCAAAAGTCACTCCAGTGTT+TGG 0.403653 4_1:+61354323 None:intergenic
TCATAATGCTCAAGAAGATT+CGG 0.406140 4_1:-61354504 Msa0561760:CDS
CATCCATTTCTGTCAAAAGT+TGG 0.407571 4_1:+61353928 None:intergenic
TTGCCGGCATTATTGGGAAA+TGG 0.408701 4_1:-61354767 Msa0561760:CDS
TGAAATTCCAGTTGAAAATC+GGG 0.410824 4_1:-61352378 Msa0561760:CDS
CAAGTGGATTTATGAAGGAT+TGG 0.414714 4_1:+61355413 None:intergenic
ATTCAAACAGGGACTGCTAC+TGG 0.418905 4_1:+61352341 None:intergenic
GTTTGGTTCCATTTGAAACT+TGG 0.424898 4_1:+61354340 None:intergenic
GTTTCTTGAGTATTTGGATA+AGG 0.428076 4_1:-61354690 Msa0561760:CDS
ATGGGAGGTCCCGGTGGACC+TGG 0.430906 4_1:-61354392 Msa0561760:CDS
TTCTGTCAAAAGTTGGTTGA+GGG 0.432083 4_1:+61353935 None:intergenic
CCTGGATTTCCTATGCAATT+CGG 0.433999 4_1:-61354374 Msa0561760:CDS
AATTACCTGTCTTGCTATAC+CGG 0.437039 4_1:+61353025 None:intergenic
TTCATACCTGTCTATCAAAT+CGG 0.440716 4_1:+61353823 None:intergenic
TTCCTTCTCTCGAGGCGGTC+CGG 0.442619 4_1:-61354419 Msa0561760:CDS
ATTCTCATATAGATCAACTT+TGG 0.444406 4_1:+61354658 None:intergenic
GCATCATCAGCATGTCTTGT+TGG 0.450457 4_1:-61354989 Msa0561760:CDS
TCCGGTGGAATGGGAGGTCC+CGG 0.451748 4_1:-61354401 Msa0561760:CDS
TGATGATGAAGAAGAGTTGG+AGG 0.451916 4_1:+61355384 None:intergenic
CATAATGCTCAAGAAGATTC+GGG 0.453447 4_1:-61354503 Msa0561760:CDS
AAGTGATGATGAAGAAGAGT+TGG 0.454350 4_1:+61355381 None:intergenic
GAGGCTGTGTCTCCTGAATT+GGG 0.454840 4_1:-61354617 Msa0561760:CDS
AAATGTGAGAGAAGAATGTA+TGG 0.456699 4_1:+61355331 None:intergenic
AAGTGGATTTATGAAGGATT+GGG 0.460665 4_1:+61355414 None:intergenic
ATCTAAAGCCAAGTTTCAAA+TGG 0.460715 4_1:-61354348 Msa0561760:CDS
AGTAGCAGTCCCTGTTTGAA+TGG 0.465711 4_1:-61352339 Msa0561760:exon
TTGTTGGAGGATTAGGTGGT+AGG 0.468049 4_1:-61353118 Msa0561760:CDS
AACAGTAATAGAACTACTCT+TGG 0.468446 4_1:-61354950 Msa0561760:CDS
ACTCTTGGTAAGGATTTGAA+TGG 0.469263 4_1:-61354935 Msa0561760:CDS
GCTGGTCGGCGAGGAAGGAC+AGG 0.470330 4_1:-61353566 Msa0561760:CDS
GGGACTGCTACTGGAGTTGA+AGG 0.470521 4_1:+61352350 None:intergenic
CCTCCAGAATGTCGTATTCG+AGG 0.470895 4_1:-61354712 Msa0561760:CDS
CTCTTTGCAAGAATTGTTGG+AGG 0.472097 4_1:-61353131 Msa0561760:CDS
GGTGAGCCTGAGGTTACAAC+TGG 0.473700 4_1:-61353074 Msa0561760:CDS
GCTAGTTTCTTACCCACAAA+TGG 0.476086 4_1:+61353427 None:intergenic
AATGAAGCTGCTATATTAGC+TGG 0.476361 4_1:-61353584 Msa0561760:CDS
GGTTGCAGAACTTTGACTCC+TGG 0.477393 4_1:-61353257 Msa0561760:intron
GACAGAAATGGATGGATTCG+AGG 0.478293 4_1:-61353919 Msa0561760:CDS
AAGGCTATTGCTGGTGAAGC+TGG 0.478309 4_1:-61354149 Msa0561760:CDS
ACCAGGCCGATTTGATAGAC+AGG 0.482217 4_1:-61353829 Msa0561760:intron
GAATGTCTGATATTGGTCCT+TGG 0.484443 4_1:-61352646 Msa0561760:CDS
GAGTTTGTCGAGATGTTTGT+TGG 0.484687 4_1:-61354098 Msa0561760:CDS
TGGTCATGATGCGGTACAAA+AGG 0.488639 4_1:-61353237 Msa0561760:CDS
CCCGAGAGGTTCACTTCTGT+TGG 0.488698 4_1:-61354236 Msa0561760:CDS
AAAATCAGCAGGAAGGAAGA+AGG 0.491252 4_1:-61354829 Msa0561760:CDS
TAGTGGCGTATCATGAAGTT+GGG 0.491569 4_1:-61353454 Msa0561760:CDS
TTAGTGGCGTATCATGAAGT+TGG 0.491676 4_1:-61353455 Msa0561760:CDS
AGCAACAAGTGGATTTATGA+AGG 0.493275 4_1:+61355408 None:intergenic
GGGATTCTGAAATTGTTGCT+TGG 0.498266 4_1:-61354806 Msa0561760:CDS
TGAATTTCTGAAGAAGCTCT+TGG 0.500518 4_1:+61354552 None:intergenic
AATACACCAATGACAGCAGC+AGG 0.500849 4_1:+61354443 None:intergenic
AGTTCCTCGAGGTCAAGCTC+GGG 0.500879 4_1:-61353207 Msa0561760:CDS
TGGGAAGAGCAAAAGTTTAG+TGG 0.504719 4_1:-61353471 Msa0561760:CDS
CACCTCCATAAAATCCTGCT+TGG 0.506645 4_1:+61354277 None:intergenic
TGTTGGAGGATTAGGTGGTA+GGG 0.508331 4_1:-61353117 Msa0561760:CDS
AAAGTTGATCTATATGAGAA+TGG 0.514012 4_1:-61354656 Msa0561760:CDS
TGATAGAATTGTCGCTGGAA+TGG 0.516197 4_1:-61353513 Msa0561760:CDS
GTTGGTGCTCGCATTCCAAA+AGG 0.518433 4_1:-61354218 Msa0561760:CDS
TTTCCATTTCCCAATAATGC+CGG 0.518756 4_1:+61354764 None:intergenic
TAGTTCCTCGAGGTCAAGCT+CGG 0.519211 4_1:-61353208 Msa0561760:CDS
GTTGATGAAATTGACGCTGT+TGG 0.520478 4_1:-61354008 Msa0561760:CDS
GTCAAGCTCGGGGTCTTACA+TGG 0.521459 4_1:-61353196 Msa0561760:CDS
GACTCTGCGTTATTGAGACC+AGG 0.523124 4_1:-61353846 Msa0561760:CDS
ATCCTTGGAACAAAATCAGC+AGG 0.523200 4_1:-61354840 Msa0561760:CDS
TATTAGCTGGTCGGCGAGGA+AGG 0.526217 4_1:-61353571 Msa0561760:CDS
TGGGGTGGATGAAGCCAAGC+AGG 0.530470 4_1:-61354291 Msa0561760:CDS
GATGGATTCGAGGGAAATAC+CGG 0.531249 4_1:-61353909 Msa0561760:CDS
AAATCAGCAGGAAGGAAGAA+GGG 0.532430 4_1:-61354828 Msa0561760:CDS
AGAATTGTCGCTGGAATGGA+AGG 0.532585 4_1:-61353509 Msa0561760:CDS
TTGCTTGGAAATGTCGGTGT+TGG 0.533808 4_1:-61354791 Msa0561760:CDS
AGAGCTTCTTCAGAAATTCA+GGG 0.534293 4_1:-61354549 Msa0561760:CDS
CACCGGACCGCCTCGAGAGA+AGG 0.534803 4_1:+61354417 None:intergenic
GCTTATGCTGCTGATGAACA+AGG 0.536032 4_1:-61354740 Msa0561760:CDS
GAAGTTGGGCATGCCATTTG+TGG 0.537039 4_1:-61353440 Msa0561760:CDS
CCGAATTGCATAGGAAATCC+AGG 0.539719 4_1:+61354374 None:intergenic
CATAGGAAATCCAGGTCCAC+CGG 0.540380 4_1:+61354382 None:intergenic
CAAAGAGGGACTGGAATTGG+TGG 0.540688 4_1:-61353981 Msa0561760:CDS
GTTGGAAGACAAAGAGGGAC+TGG 0.540999 4_1:-61353990 Msa0561760:CDS
AGCTTCACCAGCAATAGCCT+TGG 0.542257 4_1:+61354151 None:intergenic
GAAGGAACATTAATGACCGA+TGG 0.543574 4_1:-61353491 Msa0561760:CDS
CATAATGAAGAGGGTAACTT+CGG 0.544615 4_1:+61352274 None:intergenic
TTTCTGTCAAAAGTTGGTTG+AGG 0.544666 4_1:+61353934 None:intergenic
TCTATTGATAGAATTGTCGC+TGG 0.544908 4_1:-61353518 Msa0561760:CDS
GAAGGATTGGGTGTGGCTAG+AGG 0.545144 4_1:+61355426 None:intergenic
ACCTGTCTATCAAATCGGCC+TGG 0.546036 4_1:+61353828 None:intergenic
AGGCGGTCCGGTGGAATGGG+AGG 0.546632 4_1:-61354407 Msa0561760:CDS
GGTTGATGTTCCAGATGTAA+GGG 0.547060 4_1:-61353726 Msa0561760:CDS
AGAGGGACTGGAATTGGTGG+AGG 0.547706 4_1:-61353978 Msa0561760:CDS
TGTGGAAGTCCTTCTGGAGA+AGG 0.550581 4_1:-61352447 Msa0561760:CDS
CCAACAGAAGTGAACCTCTC+GGG 0.551725 4_1:+61354236 None:intergenic
AATCACCGGTATAGCAAGAC+AGG 0.551889 4_1:-61353030 Msa0561760:intron
TTAGATTGGCCGAATTGCAT+AGG 0.553085 4_1:+61354365 None:intergenic
AGCAATAGCCTTGGCTAACA+AGG 0.553692 4_1:+61354160 None:intergenic
TAGCCTTCTTGAACAAGTCA+CGG 0.553994 4_1:+61354057 None:intergenic
ACCGGGACCTCCCATTCCAC+CGG 0.558678 4_1:+61354400 None:intergenic
CTTCTCTCGAGGCGGTCCGG+TGG 0.561799 4_1:-61354416 Msa0561760:CDS
TTTCAAATGGAACCAAACAC+TGG 0.563173 4_1:-61354335 Msa0561760:CDS
TGAGATCAGAGTTGGGTCAT+CGG 0.563203 4_1:+61353163 None:intergenic
TAATAGAACTACTCTTGGTA+AGG 0.564277 4_1:-61354945 Msa0561760:CDS
AAGTTGGGCATGCCATTTGT+GGG 0.566271 4_1:-61353439 Msa0561760:intron
TCATCAACAAAGACAATGCA+AGG 0.570490 4_1:+61354023 None:intergenic
ACGTTTGATTCGTTTCACTT+CGG 0.571131 4_1:+61355472 None:intergenic
AGAAGCTCTTGGCTAAGTCC+AGG 0.571364 4_1:+61354563 None:intergenic
ATCAGAGTTGGGTCATCGGA+AGG 0.574711 4_1:+61353167 None:intergenic
CACAGCCTCAACAATAGCTA+TGG 0.575621 4_1:+61354631 None:intergenic
GGGAAGGACCGAAATCCTAA+AGG 0.575874 4_1:-61353705 Msa0561760:CDS
CCTGAGGTTACAACTGGTGC+AGG 0.577792 4_1:-61353068 Msa0561760:CDS
GTGTATTGTTCCTTCTCTCG+AGG 0.578733 4_1:-61354427 Msa0561760:CDS
ACAGAAATGGATGGATTCGA+GGG 0.579562 4_1:-61353918 Msa0561760:CDS
GGTGATTTGCAGCAAATCAC+CGG 0.580836 4_1:-61353044 Msa0561760:CDS
AGATCAGCTCCGCTAAAACC+AGG 0.581166 4_1:+61353620 None:intergenic
GTGAGAGAAGAATGTATGGA+AGG 0.584999 4_1:+61355335 None:intergenic
GACGCTGTTGGAAGACAAAG+AGG 0.585021 4_1:-61353996 Msa0561760:CDS
CGATGTTATCATGAGAATGA+TGG 0.588855 4_1:-61352594 Msa0561760:CDS
AGAATTGTTGGAGGATTAGG+TGG 0.589670 4_1:-61353122 Msa0561760:CDS
CGTTGTTGCTGCAACTAACA+GGG 0.589919 4_1:-61353880 Msa0561760:CDS
CTGGAGAAGGAGACGTTGAG+TGG 0.590228 4_1:-61352434 Msa0561760:CDS
CCTGCACCAGTTGTAACCTC+AGG 0.590727 4_1:+61353068 None:intergenic
ACCAACAGAAGTGAACCTCT+CGG 0.592864 4_1:+61354235 None:intergenic
AATTTGAAGCATAATGAAGA+GGG 0.592978 4_1:+61352265 None:intergenic
CAATCTTATCAATTGCCTCA+CGG 0.597266 4_1:+61352468 None:intergenic
GGTGGAATGGGAGGTCCCGG+TGG 0.599843 4_1:-61354398 Msa0561760:CDS
AAATTGCATTGACACAGATA+AGG 0.602585 4_1:-61352496 Msa0561760:CDS
ATAGGAAATCCAGGTCCACC+GGG 0.605635 4_1:+61354383 None:intergenic
GAGTTGGAGGTAGCAACAAG+TGG 0.608044 4_1:+61355397 None:intergenic
AATCAGCAGGAAGGAAGAAG+GGG 0.612772 4_1:-61354827 Msa0561760:CDS
TGAGGCAATTGATAAGATTG+TGG 0.614636 4_1:-61352465 Msa0561760:CDS
AAATTGTTGCTTGGAAATGT+CGG 0.619146 4_1:-61354797 Msa0561760:CDS
GAGGGACTGGAATTGGTGGA+GGG 0.620174 4_1:-61353977 Msa0561760:CDS
TGTCCGTGACTTGTTCAAGA+AGG 0.622308 4_1:-61354060 Msa0561760:CDS
AAATTTGAAGCATAATGAAG+AGG 0.624871 4_1:+61352264 None:intergenic
TTATCATGAGAATGATGGCA+AGG 0.626312 4_1:-61352589 Msa0561760:CDS
TGGAAAGACCTTGTTAGCCA+AGG 0.626550 4_1:-61354168 Msa0561760:CDS
AAGGAACATTAATGACCGAT+GGG 0.627659 4_1:-61353490 Msa0561760:CDS
GATTTATGAAGGATTGGGTG+TGG 0.627688 4_1:+61355419 None:intergenic
ATGTTCCAGATGTAAGGGGA+AGG 0.629803 4_1:-61353721 Msa0561760:CDS
CTGGTCGGCGAGGAAGGACA+GGG 0.631120 4_1:-61353565 Msa0561760:CDS
TAACGCAGAGTCAAGAATGT+CGG 0.631624 4_1:+61353857 None:intergenic
TCAACGTCTCCTTCTCCAGA+AGG 0.631790 4_1:+61352438 None:intergenic
CTCAATGTCAGAAAAGCTTG+CGG 0.631796 4_1:-61352564 Msa0561760:CDS
TCACTTTCCTCTGCACTCAG+AGG 0.636779 4_1:-61355364 Msa0561760:five_prime_UTR
GTGATTGCAATGAGAACACC+TGG 0.637344 4_1:-61353638 Msa0561760:CDS
AAGCTGCTATATTAGCTGGT+CGG 0.645613 4_1:-61353580 Msa0561760:CDS
TATTGTTCCTTCTCTCGAGG+CGG 0.648203 4_1:-61354424 Msa0561760:CDS
TTGGAACAAAATCAGCAGGA+AGG 0.651292 4_1:-61354836 Msa0561760:CDS
GAGGTTACAACTGGTGCAGG+TGG 0.653393 4_1:-61353065 Msa0561760:CDS
ACTGCTACTGGAGTTGAAGG+AGG 0.656492 4_1:+61352353 None:intergenic
GTTGATGTTCCAGATGTAAG+GGG 0.661366 4_1:-61353725 Msa0561760:CDS
AGACCCCGAGCTTGACCTCG+AGG 0.661905 4_1:+61353203 None:intergenic
CTTATGCTGCTGATGAACAA+GGG 0.662325 4_1:-61354739 Msa0561760:CDS
GTTCCTCGAGGTCAAGCTCG+GGG 0.664861 4_1:-61353206 Msa0561760:CDS
TGCAGCAACAACGATGACAC+CGG 0.666354 4_1:+61353890 None:intergenic
GACGAGTCCATAAGTGACCA+AGG 0.666473 4_1:+61352629 None:intergenic
TGGAACCATAGCTATTGTTG+AGG 0.667930 4_1:-61354636 Msa0561760:CDS
GCTATATTAGCTGGTCGGCG+AGG 0.669032 4_1:-61353575 Msa0561760:CDS
GTTTGAACCTCTGAGTGCAG+AGG 0.672181 4_1:+61355357 None:intergenic
ACATACAGGCCATTCAAACA+GGG 0.675696 4_1:+61352330 None:intergenic
TTTGACTCCTGGTCATGATG+CGG 0.676383 4_1:-61353246 Msa0561760:CDS
ATGGACTCGTCAGCTCAAAG+TGG 0.680431 4_1:-61352617 Msa0561760:CDS
AATTTCTCAAGAAGCCCGAG+AGG 0.683150 4_1:-61354250 Msa0561760:CDS
AAGGTCTTTCCAGTTCCTGG+AGG 0.691373 4_1:+61354179 None:intergenic
ATCTGACAATCTCTTGACAG+CGG 0.699497 4_1:+61352529 None:intergenic
ACGCTGTTGGAAGACAAAGA+GGG 0.712100 4_1:-61353995 Msa0561760:CDS
ACGTTAATAGAAAGCCACGT+AGG 0.716810 4_1:-61355453 Msa0561760:five_prime_UTR
ATCAGCAGGAAGGAAGAAGG+GGG 0.718080 4_1:-61354826 Msa0561760:CDS
TAAACTCTGACAGTAGAGCG+CGG 0.727648 4_1:+61352402 None:intergenic
ATACACCAATGACAGCAGCA+GGG 0.728875 4_1:+61354444 None:intergenic
TGGCTAGAGGAAGACCTACG+TGG 0.731437 4_1:+61355439 None:intergenic
AAGGTGACATTAGTTCCTCG+AGG 0.734920 4_1:-61353218 Msa0561760:CDS
CCTCGAATACGACATTCTGG+AGG 0.741604 4_1:+61354712 None:intergenic
ACAGATAAGGAACAACCGTG+AGG 0.756868 4_1:-61352483 Msa0561760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATCTATAAAAAAAG+AGG + chr4_1:61352478-61352497 None:intergenic 10.0%
!! GAATTGATAAAATTAAAGTA+AGG + chr4_1:61352392-61352411 None:intergenic 15.0%
!! AACTAATTATATGTTTAACA+GGG + chr4_1:61352573-61352592 None:intergenic 15.0%
!!! ATTTTCTTCATTGAATAATA+AGG - chr4_1:61352739-61352758 Msa0561760:intron 15.0%
!! GTATGAATATGATTATATTA+CGG - chr4_1:61353820-61353839 Msa0561760:intron 15.0%
!! TGAATGATTAAATTATTGAT+CGG - chr4_1:61353860-61353879 Msa0561760:CDS 15.0%
!! AAATAAAAGGAAGAAAAAAT+AGG + chr4_1:61354659-61354678 None:intergenic 15.0%
!!! ATTTTAAAATAACTACATAC+AGG + chr4_1:61355314-61355333 None:intergenic 15.0%
!! GAAATTACTAAAACTAATGA+AGG + chr4_1:61352414-61352433 None:intergenic 20.0%
!!! AAAGAGGTTTTTAGATTAAA+GGG + chr4_1:61352462-61352481 None:intergenic 20.0%
!!! AAAAGAGGTTTTTAGATTAA+AGG + chr4_1:61352463-61352482 None:intergenic 20.0%
!! AATTAATTTACAACCACAAT+TGG - chr4_1:61352535-61352554 Msa0561760:CDS 20.0%
!! GAAATAAATAAATCCAATTG+TGG + chr4_1:61352551-61352570 None:intergenic 20.0%
!! CAACTAATTATATGTTTAAC+AGG + chr4_1:61352574-61352593 None:intergenic 20.0%
!! AAGATTAAGACTTCATAATT+TGG - chr4_1:61352603-61352622 Msa0561760:CDS 20.0%
!!! TCTCTTTTGTTTAATCTTAT+TGG - chr4_1:61353148-61353167 Msa0561760:CDS 20.0%
!!! CTCTTTTGTTTAATCTTATT+GGG - chr4_1:61353149-61353168 Msa0561760:CDS 20.0%
!! TAATCATTCATAAGCATATA+AGG + chr4_1:61353850-61353869 None:intergenic 20.0%
!! TTGTAACATTTATTTGTACT+TGG - chr4_1:61354349-61354368 Msa0561760:CDS 20.0%
!! TATTCATGCTACAAAATAAA+AGG + chr4_1:61354672-61354691 None:intergenic 20.0%
!! TAGATACAACTACAATTAAT+TGG - chr4_1:61354758-61354777 Msa0561760:CDS 20.0%
!! AATCAAAAGATATTATCGTA+AGG + chr4_1:61354891-61354910 None:intergenic 20.0%
!!! TCTCTCACATTTTACTTTTA+AGG - chr4_1:61352307-61352326 Msa0561760:intron 25.0%
!!! TTCTTTTGAGTTCTATGTTA+TGG - chr4_1:61352435-61352454 Msa0561760:CDS 25.0%
! ATTCTCATATAGATCAACTT+TGG + chr4_1:61352972-61352991 None:intergenic 25.0%
!! AAAGTTGATCTATATGAGAA+TGG - chr4_1:61352971-61352990 Msa0561760:intron 25.0%
! ATAGAATCATCAATCTCTTT+AGG + chr4_1:61354094-61354113 None:intergenic 25.0%
! AAATGTTACAAAACAACTGT+GGG + chr4_1:61354340-61354359 None:intergenic 25.0%
! TAAATGTTACAAAACAACTG+TGG + chr4_1:61354341-61354360 None:intergenic 25.0%
! AAAAAATAGGAGATATGATG+CGG + chr4_1:61354646-61354665 None:intergenic 25.0%
! AAGATATTATCGTAAGGAAT+AGG + chr4_1:61354885-61354904 None:intergenic 25.0%
!! AATTTGAAGCATAATGAAGA+GGG + chr4_1:61355365-61355384 None:intergenic 25.0%
!! AAATTTGAAGCATAATGAAG+AGG + chr4_1:61355366-61355385 None:intergenic 25.0%
! AAGTGGATTTATGAAGGATT+GGG + chr4_1:61352216-61352235 None:intergenic 30.0%
AAATGTGAGAGAAGAATGTA+TGG + chr4_1:61352299-61352318 None:intergenic 30.0%
! CTTCATAATTTGGTTTCAGA+TGG - chr4_1:61352613-61352632 Msa0561760:CDS 30.0%
! AGTAGTTCTATTACTGTTTG+TGG + chr4_1:61352675-61352694 None:intergenic 30.0%
AACAGTAATAGAACTACTCT+TGG - chr4_1:61352677-61352696 Msa0561760:intron 30.0%
TAATAGAACTACTCTTGGTA+AGG - chr4_1:61352682-61352701 Msa0561760:intron 30.0%
! GAAGATATCTCTTTTCATCA+TGG - chr4_1:61352714-61352733 Msa0561760:intron 30.0%
!!! ATTTTCCATAAAAGCATCCT+TGG - chr4_1:61352772-61352791 Msa0561760:intron 30.0%
! AAATTGTTGCTTGGAAATGT+CGG - chr4_1:61352830-61352849 Msa0561760:intron 30.0%
GTTTCTTGAGTATTTGGATA+AGG - chr4_1:61352937-61352956 Msa0561760:intron 30.0%
TCATAATGCTCAAGAAGATT+CGG - chr4_1:61353123-61353142 Msa0561760:CDS 30.0%
!! TTTGAAACTTGGCTTTAGAT+TGG + chr4_1:61353279-61353298 None:intergenic 30.0%
! ATCTAAAGCCAAGTTTCAAA+TGG - chr4_1:61353279-61353298 Msa0561760:intron 30.0%
GAACCTGATATAGAGAAAAA+CGG + chr4_1:61353508-61353527 None:intergenic 30.0%
TTCATACCTGTCTATCAAAT+CGG + chr4_1:61353807-61353826 None:intergenic 30.0%
TATTGTTAGCATGAACCTTT+AGG + chr4_1:61353940-61353959 None:intergenic 30.0%
! GCTGCAGAAGAAATTATTTT+TGG - chr4_1:61354532-61354551 Msa0561760:CDS 30.0%
TGCAATAAGATCCAATCATA+TGG - chr4_1:61354788-61354807 Msa0561760:CDS 30.0%
CATTGAAGAAACCATATGAT+TGG + chr4_1:61354802-61354821 None:intergenic 30.0%
ACATCAGAAGAAGATAAGAA+AGG + chr4_1:61354916-61354935 None:intergenic 30.0%
TTTAATGATACTCTTGCAGA+TGG - chr4_1:61354946-61354965 Msa0561760:CDS 30.0%
! ACATTTGGAATGTCTGATAT+TGG - chr4_1:61354974-61354993 Msa0561760:CDS 30.0%
! AAATTGCATTGACACAGATA+AGG - chr4_1:61355131-61355150 Msa0561760:intron 30.0%
CTGAAATTCCAGTTGAAAAT+CGG - chr4_1:61355248-61355267 Msa0561760:intron 30.0%
TGAAATTCCAGTTGAAAATC+GGG - chr4_1:61355249-61355268 Msa0561760:intron 30.0%
! ACGTTTGATTCGTTTCACTT+CGG + chr4_1:61352158-61352177 None:intergenic 35.0%
! CAAGTGGATTTATGAAGGAT+TGG + chr4_1:61352217-61352236 None:intergenic 35.0%
! AGCAACAAGTGGATTTATGA+AGG + chr4_1:61352222-61352241 None:intergenic 35.0%
! AAGTGATGATGAAGAAGAGT+TGG + chr4_1:61352249-61352268 None:intergenic 35.0%
ACTCTTGGTAAGGATTTGAA+TGG - chr4_1:61352692-61352711 Msa0561760:intron 35.0%
! TTGTTCCAAGGATGCTTTTA+TGG + chr4_1:61352780-61352799 None:intergenic 35.0%
TTTCCATTTCCCAATAATGC+CGG + chr4_1:61352866-61352885 None:intergenic 35.0%
TTCGAGGTTTCTTGAGTATT+TGG - chr4_1:61352931-61352950 Msa0561760:intron 35.0%
! TGAATTTCTGAAGAAGCTCT+TGG + chr4_1:61353078-61353097 None:intergenic 35.0%
AAGAGCTTCTTCAGAAATTC+AGG - chr4_1:61353077-61353096 Msa0561760:CDS 35.0%
AGAGCTTCTTCAGAAATTCA+GGG - chr4_1:61353078-61353097 Msa0561760:CDS 35.0%
CATAATGCTCAAGAAGATTC+GGG - chr4_1:61353124-61353143 Msa0561760:CDS 35.0%
! GTTTGGTTCCATTTGAAACT+TGG + chr4_1:61353290-61353309 None:intergenic 35.0%
TTTCAAATGGAACCAAACAC+TGG - chr4_1:61353292-61353311 Msa0561760:intron 35.0%
!!! TGACTTTTGATGATGTTGCT+GGG - chr4_1:61353317-61353336 Msa0561760:intron 35.0%
!! GTTCCGTTTTTCTCTATATC+AGG - chr4_1:61353502-61353521 Msa0561760:CDS 35.0%
TCATCAACAAAGACAATGCA+AGG + chr4_1:61353607-61353626 None:intergenic 35.0%
! TTCTGTCAAAAGTTGGTTGA+GGG + chr4_1:61353695-61353714 None:intergenic 35.0%
! TTTCTGTCAAAAGTTGGTTG+AGG + chr4_1:61353696-61353715 None:intergenic 35.0%
! CAACCAACTTTTGACAGAAA+TGG - chr4_1:61353696-61353715 Msa0561760:CDS 35.0%
CATCCATTTCTGTCAAAAGT+TGG + chr4_1:61353702-61353721 None:intergenic 35.0%
! CAACTTTTGACAGAAATGGA+TGG - chr4_1:61353700-61353719 Msa0561760:CDS 35.0%
!! AGCATGAACCTTTAGGATTT+CGG + chr4_1:61353933-61353952 None:intergenic 35.0%
AATGAAGCTGCTATATTAGC+TGG - chr4_1:61354043-61354062 Msa0561760:CDS 35.0%
TCTATTGATAGAATTGTCGC+TGG - chr4_1:61354109-61354128 Msa0561760:CDS 35.0%
AAGGAACATTAATGACCGAT+GGG - chr4_1:61354137-61354156 Msa0561760:CDS 35.0%
! TAAACTTTTGCTCTTCCCAT+CGG + chr4_1:61354155-61354174 None:intergenic 35.0%
GTAACATTGCAATGAAAGCA+AGG - chr4_1:61354254-61354273 Msa0561760:CDS 35.0%
!! AACTGTGGGAATTTTTAGAG+TGG + chr4_1:61354326-61354345 None:intergenic 35.0%
!!! GTTGTTTTGAGATCAGAGTT+GGG + chr4_1:61354474-61354493 None:intergenic 35.0%
!!! TGTTGTTTTGAGATCAGAGT+TGG + chr4_1:61354475-61354494 None:intergenic 35.0%
CAACTCTTTGCAAGAATTGT+TGG - chr4_1:61354493-61354512 Msa0561760:CDS 35.0%
!!! AATTATTTTTGGTGAGCCTG+AGG - chr4_1:61354543-61354562 Msa0561760:CDS 35.0%
! AATTACCTGTCTTGCTATAC+CGG + chr4_1:61354605-61354624 None:intergenic 35.0%
AACGATGATGCAGATTTAGA+AGG - chr4_1:61354857-61354876 Msa0561760:CDS 35.0%
CGATGTTATCATGAGAATGA+TGG - chr4_1:61355033-61355052 Msa0561760:intron 35.0%
TTATCATGAGAATGATGGCA+AGG - chr4_1:61355038-61355057 Msa0561760:intron 35.0%
CAATCTTATCAATTGCCTCA+CGG + chr4_1:61355162-61355181 None:intergenic 35.0%
TGAGGCAATTGATAAGATTG+TGG - chr4_1:61355162-61355181 Msa0561760:intron 35.0%
CATAATGAAGAGGGTAACTT+CGG + chr4_1:61355356-61355375 None:intergenic 35.0%
ACGTTAATAGAAAGCCACGT+AGG - chr4_1:61352174-61352193 Msa0561760:three_prime_UTR 40.0%
GATTTATGAAGGATTGGGTG+TGG + chr4_1:61352211-61352230 None:intergenic 40.0%
! TGATGATGAAGAAGAGTTGG+AGG + chr4_1:61352246-61352265 None:intergenic 40.0%
GTGAGAGAAGAATGTATGGA+AGG + chr4_1:61352295-61352314 None:intergenic 40.0%
ATCCTTGGAACAAAATCAGC+AGG - chr4_1:61352787-61352806 Msa0561760:intron 40.0%
!!! TTCCTGCTGATTTTGTTCCA+AGG + chr4_1:61352792-61352811 None:intergenic 40.0%
TTGGAACAAAATCAGCAGGA+AGG - chr4_1:61352791-61352810 Msa0561760:intron 40.0%
AAAATCAGCAGGAAGGAAGA+AGG - chr4_1:61352798-61352817 Msa0561760:intron 40.0%
AAATCAGCAGGAAGGAAGAA+GGG - chr4_1:61352799-61352818 Msa0561760:intron 40.0%
!! GGGATTCTGAAATTGTTGCT+TGG - chr4_1:61352821-61352840 Msa0561760:intron 40.0%
CTTATGCTGCTGATGAACAA+GGG - chr4_1:61352888-61352907 Msa0561760:intron 40.0%
AAACCTCGAATACGACATTC+TGG + chr4_1:61352921-61352940 None:intergenic 40.0%
TGGAACCATAGCTATTGTTG+AGG - chr4_1:61352991-61353010 Msa0561760:intron 40.0%
TGTCTCCTGAATTGGGAAAT+AGG - chr4_1:61353017-61353036 Msa0561760:intron 40.0%
TGCAACCTATTTCCCAATTC+AGG + chr4_1:61353025-61353044 None:intergenic 40.0%
CCTGGATTTCCTATGCAATT+CGG - chr4_1:61353253-61353272 Msa0561760:intron 40.0%
! TTAGATTGGCCGAATTGCAT+AGG + chr4_1:61353265-61353284 None:intergenic 40.0%
TCAAAAGTCACTCCAGTGTT+TGG + chr4_1:61353307-61353326 None:intergenic 40.0%
!!! GTGACTTTTGATGATGTTGC+TGG - chr4_1:61353316-61353335 Msa0561760:intron 40.0%
!!! GACTTTTGATGATGTTGCTG+GGG - chr4_1:61353318-61353337 Msa0561760:intron 40.0%
! TGAAGCCAAGCAGGATTTTA+TGG - chr4_1:61353345-61353364 Msa0561760:intron 40.0%
! CCAACAAGAAGAACTCCTTT+TGG + chr4_1:61353427-61353446 None:intergenic 40.0%
CCAAAAGGAGTTCTTCTTGT+TGG - chr4_1:61353424-61353443 Msa0561760:intron 40.0%
GAGTTTGTCGAGATGTTTGT+TGG - chr4_1:61353529-61353548 Msa0561760:CDS 40.0%
! GTCGAGATGTTTGTTGGTAT+TGG - chr4_1:61353535-61353554 Msa0561760:CDS 40.0%
TAGCCTTCTTGAACAAGTCA+CGG + chr4_1:61353573-61353592 None:intergenic 40.0%
! GTTGATGAAATTGACGCTGT+TGG - chr4_1:61353619-61353638 Msa0561760:CDS 40.0%
! ACAGAAATGGATGGATTCGA+GGG - chr4_1:61353709-61353728 Msa0561760:CDS 40.0%
TAACGCAGAGTCAAGAATGT+CGG + chr4_1:61353773-61353792 None:intergenic 40.0%
! ATTGATCGGAATGCTTTTGC+AGG - chr4_1:61353874-61353893 Msa0561760:CDS 40.0%
! GGTTGATGTTCCAGATGTAA+GGG - chr4_1:61353901-61353920 Msa0561760:CDS 40.0%
GTTGATGTTCCAGATGTAAG+GGG - chr4_1:61353902-61353921 Msa0561760:CDS 40.0%
!!! ATGAGAACACCTGGTTTTAG+CGG - chr4_1:61353998-61354017 Msa0561760:CDS 40.0%
AAGCTGCTATATTAGCTGGT+CGG - chr4_1:61354047-61354066 Msa0561760:CDS 40.0%
TGATAGAATTGTCGCTGGAA+TGG - chr4_1:61354114-61354133 Msa0561760:CDS 40.0%
GAAGGAACATTAATGACCGA+TGG - chr4_1:61354136-61354155 Msa0561760:CDS 40.0%
TGGGAAGAGCAAAAGTTTAG+TGG - chr4_1:61354156-61354175 Msa0561760:CDS 40.0%
TTAGTGGCGTATCATGAAGT+TGG - chr4_1:61354172-61354191 Msa0561760:CDS 40.0%
TAGTGGCGTATCATGAAGTT+GGG - chr4_1:61354173-61354192 Msa0561760:CDS 40.0%
! GCTAGTTTCTTACCCACAAA+TGG + chr4_1:61354203-61354222 None:intergenic 40.0%
! GCAATGAAAGCAAGGTTTTG+TGG - chr4_1:61354262-61354281 Msa0561760:CDS 40.0%
CTCTTTGCAAGAATTGTTGG+AGG - chr4_1:61354496-61354515 Msa0561760:CDS 40.0%
GCAAGAATTGTTGGAGGATT+AGG - chr4_1:61354502-61354521 Msa0561760:CDS 40.0%
AGAATTGTTGGAGGATTAGG+TGG - chr4_1:61354505-61354524 Msa0561760:CDS 40.0%
TTGCAGATGGTAGTCACATT+TGG - chr4_1:61354959-61354978 Msa0561760:CDS 40.0%
GAATGTCTGATATTGGTCCT+TGG - chr4_1:61354981-61355000 Msa0561760:CDS 40.0%
TATTGGTCCTTGGTCACTTA+TGG - chr4_1:61354991-61355010 Msa0561760:CDS 40.0%
CTCAATGTCAGAAAAGCTTG+CGG - chr4_1:61355063-61355082 Msa0561760:intron 40.0%
ATCTGACAATCTCTTGACAG+CGG + chr4_1:61355101-61355120 None:intergenic 40.0%
TAAGATTGTGGAAGTCCTTC+TGG - chr4_1:61355174-61355193 Msa0561760:intron 40.0%
ACATACAGGCCATTCAAACA+GGG + chr4_1:61355300-61355319 None:intergenic 40.0%
TACATACAGGCCATTCAAAC+AGG + chr4_1:61355301-61355320 None:intergenic 40.0%
GCATCATCAGCATGTCTTGT+TGG - chr4_1:61352638-61352657 Msa0561760:CDS 45.0%
AATCAGCAGGAAGGAAGAAG+GGG - chr4_1:61352800-61352819 Msa0561760:intron 45.0%
TTGCTTGGAAATGTCGGTGT+TGG - chr4_1:61352836-61352855 Msa0561760:intron 45.0%
!! AAATGTCGGTGTTGGTTTGC+CGG - chr4_1:61352844-61352863 Msa0561760:intron 45.0%
!! TGTTGGTTTGCCGGCATTAT+TGG - chr4_1:61352853-61352872 Msa0561760:intron 45.0%
!! GTTGGTTTGCCGGCATTATT+GGG - chr4_1:61352854-61352873 Msa0561760:intron 45.0%
TTGCCGGCATTATTGGGAAA+TGG - chr4_1:61352860-61352879 Msa0561760:intron 45.0%
GCTTATGCTGCTGATGAACA+AGG - chr4_1:61352887-61352906 Msa0561760:intron 45.0%
CACAGCCTCAACAATAGCTA+TGG + chr4_1:61352999-61353018 None:intergenic 45.0%
ATACACCAATGACAGCAGCA+GGG + chr4_1:61353186-61353205 None:intergenic 45.0%
AATACACCAATGACAGCAGC+AGG + chr4_1:61353187-61353206 None:intergenic 45.0%
GTGTATTGTTCCTTCTCTCG+AGG - chr4_1:61353200-61353219 Msa0561760:CDS 45.0%
TATTGTTCCTTCTCTCGAGG+CGG - chr4_1:61353203-61353222 Msa0561760:CDS 45.0%
CCGAATTGCATAGGAAATCC+AGG + chr4_1:61353256-61353275 None:intergenic 45.0%
!!! TTTTGATGATGTTGCTGGGG+TGG - chr4_1:61353321-61353340 Msa0561760:intron 45.0%
! AGCCAAGCAGGATTTTATGG+AGG - chr4_1:61353348-61353367 Msa0561760:intron 45.0%
CACCTCCATAAAATCCTGCT+TGG + chr4_1:61353353-61353372 None:intergenic 45.0%
! CAAGCAGGATTTTATGGAGG+TGG - chr4_1:61353351-61353370 Msa0561760:intron 45.0%
AATTTCTCAAGAAGCCCGAG+AGG - chr4_1:61353377-61353396 Msa0561760:intron 45.0%
ACCAACAGAAGTGAACCTCT+CGG + chr4_1:61353395-61353414 None:intergenic 45.0%
AACAAGGTCTTTCCAGTTCC+TGG + chr4_1:61353454-61353473 None:intergenic 45.0%
TGGAAAGACCTTGTTAGCCA+AGG - chr4_1:61353459-61353478 Msa0561760:CDS 45.0%
! AGCAATAGCCTTGGCTAACA+AGG + chr4_1:61353470-61353489 None:intergenic 45.0%
TTGTTAGCCAAGGCTATTGC+TGG - chr4_1:61353469-61353488 Msa0561760:CDS 45.0%
!! TGTCCGTGACTTGTTCAAGA+AGG - chr4_1:61353567-61353586 Msa0561760:CDS 45.0%
ACGCTGTTGGAAGACAAAGA+GGG - chr4_1:61353632-61353651 Msa0561760:CDS 45.0%
AGACAAAGAGGGACTGGAAT+TGG - chr4_1:61353643-61353662 Msa0561760:CDS 45.0%
! GACAGAAATGGATGGATTCG+AGG - chr4_1:61353708-61353727 Msa0561760:CDS 45.0%
! GATGGATTCGAGGGAAATAC+CGG - chr4_1:61353718-61353737 Msa0561760:CDS 45.0%
TCGTTGTTGCTGCAACTAAC+AGG - chr4_1:61353746-61353765 Msa0561760:intron 45.0%
CGTTGTTGCTGCAACTAACA+GGG - chr4_1:61353747-61353766 Msa0561760:intron 45.0%
! CGGAATGCTTTTGCAGGTAT+CGG - chr4_1:61353880-61353899 Msa0561760:CDS 45.0%
! CGGTTGATGTTCCAGATGTA+AGG - chr4_1:61353900-61353919 Msa0561760:CDS 45.0%
ATGTTCCAGATGTAAGGGGA+AGG - chr4_1:61353906-61353925 Msa0561760:CDS 45.0%
GTGATTGCAATGAGAACACC+TGG - chr4_1:61353989-61354008 Msa0561760:CDS 45.0%
AGAATTGTCGCTGGAATGGA+AGG - chr4_1:61354118-61354137 Msa0561760:CDS 45.0%
! AAGTTGGGCATGCCATTTGT+GGG - chr4_1:61354188-61354207 Msa0561760:CDS 45.0%
TTTGACTCCTGGTCATGATG+CGG - chr4_1:61354381-61354400 Msa0561760:CDS 45.0%
! TTTTGTACCGCATCATGACC+AGG + chr4_1:61354391-61354410 None:intergenic 45.0%
TGGTCATGATGCGGTACAAA+AGG - chr4_1:61354390-61354409 Msa0561760:CDS 45.0%
AAGGTGACATTAGTTCCTCG+AGG - chr4_1:61354409-61354428 Msa0561760:CDS 45.0%
TGAGATCAGAGTTGGGTCAT+CGG + chr4_1:61354467-61354486 None:intergenic 45.0%
TTGTTGGAGGATTAGGTGGT+AGG - chr4_1:61354509-61354528 Msa0561760:CDS 45.0%
TGTTGGAGGATTAGGTGGTA+GGG - chr4_1:61354510-61354529 Msa0561760:CDS 45.0%
! GGTGATTTGCAGCAAATCAC+CGG - chr4_1:61354583-61354602 Msa0561760:CDS 45.0%
AATCACCGGTATAGCAAGAC+AGG - chr4_1:61354597-61354616 Msa0561760:CDS 45.0%
ACAGATAAGGAACAACCGTG+AGG - chr4_1:61355144-61355163 Msa0561760:intron 45.0%
TAAACTCTGACAGTAGAGCG+CGG + chr4_1:61355228-61355247 None:intergenic 45.0%
ATTCAAACAGGGACTGCTAC+TGG + chr4_1:61355289-61355308 None:intergenic 45.0%
AGTAGCAGTCCCTGTTTGAA+TGG - chr4_1:61355288-61355307 Msa0561760:intron 45.0%
!! ATAATAAAAAAAATAGTTAA+AGG + chr4_1:61354825-61354844 None:intergenic 5.0%
GAGTTGGAGGTAGCAACAAG+TGG + chr4_1:61352233-61352252 None:intergenic 50.0%
TCACTTTCCTCTGCACTCAG+AGG - chr4_1:61352263-61352282 Msa0561760:three_prime_UTR 50.0%
GTTTGAACCTCTGAGTGCAG+AGG + chr4_1:61352273-61352292 None:intergenic 50.0%
ATCAGCAGGAAGGAAGAAGG+GGG - chr4_1:61352801-61352820 Msa0561760:intron 50.0%
CCTCGAATACGACATTCTGG+AGG + chr4_1:61352918-61352937 None:intergenic 50.0%
CCTCCAGAATGTCGTATTCG+AGG - chr4_1:61352915-61352934 Msa0561760:intron 50.0%
TGAGGCTGTGTCTCCTGAAT+TGG - chr4_1:61353009-61353028 Msa0561760:intron 50.0%
GAGGCTGTGTCTCCTGAATT+GGG - chr4_1:61353010-61353029 Msa0561760:intron 50.0%
! CGTGTTCGAGTTCAACTTCC+TGG - chr4_1:61353046-61353065 Msa0561760:CDS 50.0%
AGAAGCTCTTGGCTAAGTCC+AGG + chr4_1:61353067-61353086 None:intergenic 50.0%
ATAGGAAATCCAGGTCCACC+GGG + chr4_1:61353247-61353266 None:intergenic 50.0%
CATAGGAAATCCAGGTCCAC+CGG + chr4_1:61353248-61353267 None:intergenic 50.0%
CCAACAGAAGTGAACCTCTC+GGG + chr4_1:61353394-61353413 None:intergenic 50.0%
! GTTGGTGCTCGCATTCCAAA+AGG - chr4_1:61353409-61353428 Msa0561760:intron 50.0%
GTTCTTCTTGTTGGTCCTCC+AGG - chr4_1:61353433-61353452 Msa0561760:intron 50.0%
AAGGTCTTTCCAGTTCCTGG+AGG + chr4_1:61353451-61353470 None:intergenic 50.0%
AGCTTCACCAGCAATAGCCT+TGG + chr4_1:61353479-61353498 None:intergenic 50.0%
AAGGCTATTGCTGGTGAAGC+TGG - chr4_1:61353478-61353497 Msa0561760:CDS 50.0%
GACGCTGTTGGAAGACAAAG+AGG - chr4_1:61353631-61353650 Msa0561760:CDS 50.0%
GTTGGAAGACAAAGAGGGAC+TGG - chr4_1:61353637-61353656 Msa0561760:CDS 50.0%
CAAAGAGGGACTGGAATTGG+TGG - chr4_1:61353646-61353665 Msa0561760:CDS 50.0%
TGCAGCAACAACGATGACAC+CGG + chr4_1:61353740-61353759 None:intergenic 50.0%
GACTCTGCGTTATTGAGACC+AGG - chr4_1:61353781-61353800 Msa0561760:intron 50.0%
!! ACCAGGCCGATTTGATAGAC+AGG - chr4_1:61353798-61353817 Msa0561760:intron 50.0%
ACCTGTCTATCAAATCGGCC+TGG + chr4_1:61353802-61353821 None:intergenic 50.0%
GGGAAGGACCGAAATCCTAA+AGG - chr4_1:61353922-61353941 Msa0561760:CDS 50.0%
AGATCAGCTCCGCTAAAACC+AGG + chr4_1:61354010-61354029 None:intergenic 50.0%
! GAAGTTGGGCATGCCATTTG+TGG - chr4_1:61354187-61354206 Msa0561760:CDS 50.0%
GGTTGCAGAACTTTGACTCC+TGG - chr4_1:61354370-61354389 Msa0561760:CDS 50.0%
TAGTTCCTCGAGGTCAAGCT+CGG - chr4_1:61354419-61354438 Msa0561760:CDS 50.0%
ATCAGAGTTGGGTCATCGGA+AGG + chr4_1:61354463-61354482 None:intergenic 50.0%
GACGAGTCCATAAGTGACCA+AGG + chr4_1:61355001-61355020 None:intergenic 50.0%
ATGGACTCGTCAGCTCAAAG+TGG - chr4_1:61355010-61355029 Msa0561760:intron 50.0%
! TGTGGAAGTCCTTCTGGAGA+AGG - chr4_1:61355180-61355199 Msa0561760:intron 50.0%
TCAACGTCTCCTTCTCCAGA+AGG + chr4_1:61355192-61355211 None:intergenic 50.0%
! GGAGGAACCCGATTTTCAAC+TGG + chr4_1:61355259-61355278 None:intergenic 50.0%
ACTGCTACTGGAGTTGAAGG+AGG + chr4_1:61355277-61355296 None:intergenic 50.0%
TGGCTAGAGGAAGACCTACG+TGG + chr4_1:61352191-61352210 None:intergenic 55.0%
GAAGGATTGGGTGTGGCTAG+AGG + chr4_1:61352204-61352223 None:intergenic 55.0%
GCTTTCCCTGCTGCTGTCAT+TGG - chr4_1:61353178-61353197 Msa0561760:CDS 55.0%
CCCGAGAGGTTCACTTCTGT+TGG - chr4_1:61353391-61353410 Msa0561760:intron 55.0%
CTTGTTGGTCCTCCAGGAAC+TGG - chr4_1:61353439-61353458 Msa0561760:intron 55.0%
AGAGGGACTGGAATTGGTGG+AGG - chr4_1:61353649-61353668 Msa0561760:CDS 55.0%
GAGGGACTGGAATTGGTGGA+GGG - chr4_1:61353650-61353669 Msa0561760:CDS 55.0%
TCGGTCCTTCCCCTTACATC+TGG + chr4_1:61353914-61353933 None:intergenic 55.0%
GCTATATTAGCTGGTCGGCG+AGG - chr4_1:61354052-61354071 Msa0561760:CDS 55.0%
TATTAGCTGGTCGGCGAGGA+AGG - chr4_1:61354056-61354075 Msa0561760:CDS 55.0%
AGTTCCTCGAGGTCAAGCTC+GGG - chr4_1:61354420-61354439 Msa0561760:CDS 55.0%
GTCAAGCTCGGGGTCTTACA+TGG - chr4_1:61354431-61354450 Msa0561760:CDS 55.0%
GGTGAGCCTGAGGTTACAAC+TGG - chr4_1:61354553-61354572 Msa0561760:CDS 55.0%
CCTGCACCAGTTGTAACCTC+AGG + chr4_1:61354562-61354581 None:intergenic 55.0%
CCTGAGGTTACAACTGGTGC+AGG - chr4_1:61354559-61354578 Msa0561760:CDS 55.0%
GAGGTTACAACTGGTGCAGG+TGG - chr4_1:61354562-61354581 Msa0561760:CDS 55.0%
CTGGAGAAGGAGACGTTGAG+TGG - chr4_1:61355193-61355212 Msa0561760:intron 55.0%
GGGACTGCTACTGGAGTTGA+AGG + chr4_1:61355280-61355299 None:intergenic 55.0%
TTCCTTCTCTCGAGGCGGTC+CGG - chr4_1:61353208-61353227 Msa0561760:CDS 60.0%
TGGGGTGGATGAAGCCAAGC+AGG - chr4_1:61353336-61353355 Msa0561760:intron 60.0%
GTTCCTCGAGGTCAAGCTCG+GGG - chr4_1:61354421-61354440 Msa0561760:CDS 60.0%
TCGAGGCGGTCCGGTGGAAT+GGG - chr4_1:61353217-61353236 Msa0561760:CDS 65.0%
TCCGGTGGAATGGGAGGTCC+CGG - chr4_1:61353226-61353245 Msa0561760:CDS 65.0%
ACCGGGACCTCCCATTCCAC+CGG + chr4_1:61353230-61353249 None:intergenic 65.0%
CTGGTCGGCGAGGAAGGACA+GGG - chr4_1:61354062-61354081 Msa0561760:CDS 65.0%
AGACCCCGAGCTTGACCTCG+AGG + chr4_1:61354427-61354446 None:intergenic 65.0%
CACCGGACCGCCTCGAGAGA+AGG + chr4_1:61353213-61353232 None:intergenic 70.0%
CTTCTCTCGAGGCGGTCCGG+TGG - chr4_1:61353211-61353230 Msa0561760:CDS 70.0%
CTCGAGGCGGTCCGGTGGAA+TGG - chr4_1:61353216-61353235 Msa0561760:CDS 70.0%
AGGCGGTCCGGTGGAATGGG+AGG - chr4_1:61353220-61353239 Msa0561760:CDS 70.0%
GGTGGAATGGGAGGTCCCGG+TGG - chr4_1:61353229-61353248 Msa0561760:CDS 70.0%
ATGGGAGGTCCCGGTGGACC+TGG - chr4_1:61353235-61353254 Msa0561760:CDS 70.0%
GCTGGTCGGCGAGGAAGGAC+AGG - chr4_1:61354061-61354080 Msa0561760:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 61352155 61355494 61352155 ID=Msa0561760;Name=Msa0561760
chr4_1 mRNA 61352155 61355494 61352155 ID=Msa0561760-mRNA-1;Parent=Msa0561760;Name=Msa0561760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|0.6|0.5|6|167|694
chr4_1 exon 61352155 61352307 61352155 ID=Msa0561760-mRNA-1:exon:19266;Parent=Msa0561760-mRNA-1
chr4_1 exon 61352329 61352684 61352329 ID=Msa0561760-mRNA-1:exon:19265;Parent=Msa0561760-mRNA-1
chr4_1 exon 61353031 61353271 61353031 ID=Msa0561760-mRNA-1:exon:19264;Parent=Msa0561760-mRNA-1
chr4_1 exon 61353440 61353753 61353440 ID=Msa0561760-mRNA-1:exon:19263;Parent=Msa0561760-mRNA-1
chr4_1 exon 61353830 61355017 61353830 ID=Msa0561760-mRNA-1:exon:19262;Parent=Msa0561760-mRNA-1
chr4_1 exon 61355321 61355494 61355321 ID=Msa0561760-mRNA-1:exon:19261;Parent=Msa0561760-mRNA-1
chr4_1 five_prime_UTR 61355321 61355494 61355321 ID=Msa0561760-mRNA-1:five_prime_utr;Parent=Msa0561760-mRNA-1
chr4_1 CDS 61353830 61355017 61353830 ID=Msa0561760-mRNA-1:cds;Parent=Msa0561760-mRNA-1
chr4_1 CDS 61353440 61353753 61353440 ID=Msa0561760-mRNA-1:cds;Parent=Msa0561760-mRNA-1
chr4_1 CDS 61353031 61353271 61353031 ID=Msa0561760-mRNA-1:cds;Parent=Msa0561760-mRNA-1
chr4_1 CDS 61352343 61352684 61352343 ID=Msa0561760-mRNA-1:cds;Parent=Msa0561760-mRNA-1
chr4_1 three_prime_UTR 61352329 61352342 61352329 ID=Msa0561760-mRNA-1:three_prime_utr;Parent=Msa0561760-mRNA-1
chr4_1 three_prime_UTR 61352155 61352307 61352155 ID=Msa0561760-mRNA-1:three_prime_utr;Parent=Msa0561760-mRNA-1
Gene Sequence

>Msa0561760

ATGGCAGCATCATCAGCATGTCTTGTTGGTAATGCTTTATCCACAAACAGTAATAGAACTACTCTTGGTAAGGATTTGAATGGAAGATATCTCTTTTCATCATGGAGATTTTCTTCATTGAATAATAAGGCATCAAAATCATTTTCCATAAAAGCATCCTTGGAACAAAATCAGCAGGAAGGAAGAAGGGGGATTCTGAAATTGTTGCTTGGAAATGTCGGTGTTGGTTTGCCGGCATTATTGGGAAATGGAAAAGCTTATGCTGCTGATGAACAAGGGTCGTCCTCCAGAATGTCGTATTCGAGGTTTCTTGAGTATTTGGATAAGGATAGAGTTACCAAAGTTGATCTATATGAGAATGGAACCATAGCTATTGTTGAGGCTGTGTCTCCTGAATTGGGAAATAGGTTGCAGCGTGTTCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGCTCAAGAAGATTCGGGTTCTCTTTTGTTTAATCTTATTGGGAATCTTGCTTTCCCTGCTGCTGTCATTGGTGTATTGTTCCTTCTCTCGAGGCGGTCCGGTGGAATGGGAGGTCCCGGTGGACCTGGATTTCCTATGCAATTCGGCCAATCTAAAGCCAAGTTTCAAATGGAACCAAACACTGGAGTGACTTTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTTGAATTTCTCAAGAAGCCCGAGAGGTTCACTTCTGTTGGTGCTCGCATTCCAAAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGAAAGACCTTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCCGTTTTTCTCTATATCAGGTTCTGAGTTTGTCGAGATGTTTGTTGGTATTGGTGCTTCTCGTGTCCGTGACTTGTTCAAGAAGGCTAAAGAGAATGCTCCTTGCATTGTCTTTGTTGATGAAATTGACGCTGTTGGAAGACAAAGAGGGACTGGAATTGGTGGAGGGAATGACGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTCGAGGGAAATACCGGTGTCATCGTTGTTGCTGCAACTAACAGGGCCGACATTCTTGACTCTGCGTTATTGAGACCAGGCCGATTTGATAGACAGGTATCGGTTGATGTTCCAGATGTAAGGGGAAGGACCGAAATCCTAAAGGTTCATGCTAACAATAAAAAATTTGATAATGATGTTTCTCTTGAAGTGATTGCAATGAGAACACCTGGTTTTAGCGGAGCTGATCTTGCAAATCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGAGGAAGGACAGGGATTTCACCTAAAGAGATTGATGATTCTATTGATAGAATTGTCGCTGGAATGGAAGGAACATTAATGACCGATGGGAAGAGCAAAAGTTTAGTGGCGTATCATGAAGTTGGGCATGCCATTTGTGGAACTTTGACTCCTGGTCATGATGCGGTACAAAAGGTGACATTAGTTCCTCGAGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCCGATGACCCAACTCTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGGATTAGGTGGTAGGGCTGCAGAAGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGTGCAGGTGGTGATTTGCAGCAAATCACCGGTATAGCAAGACAGATGGTAGTCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACTCGTCAGCTCAAAGTGGCGATGTTATCATGAGAATGATGGCAAGGAACTCAATGTCAGAAAAGCTTGCGGAAGACATTGATACCGCTGTCAAGAGATTGTCAGATGAAGCATATGAAATTGCATTGACACAGATAAGGAACAACCGTGAGGCAATTGATAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACGTTGAGTGGAGATGAATTCCGCGCTCTACTGTCAGAGTTTACTGAAATTCCAGTTGAAAATCGGGTTCCTCCTTCAACTCCAGTAGCAGTCCCTGTTTGA
Protein sequence

>Msa0561760

MAASSACLVGNALSTNSNRTTLGKDLNGRYLFSSWRFSSLNNKASKSFSIKASLEQNQQEGRRGILKLLLGNVGVGLPALLGNGKAYAADEQGSSSRMSYSRFLEYLDKDRVTKVDLYENGTIAIVEAVSPELGNRLQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPAAVIGVLFLLSRRSGGMGGPGGPGFPMQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTSVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHANNKKFDNDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTGISPKEIDDSIDRIVAGMEGTLMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAGGDLQQITGIARQMVVTFGMSDIGPWSLMDSSAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALTQIRNNREAIDKIVEVLLEKETLSGDEFRALLSEFTEIPVENRVPPSTPVAVPV*