AlfalfaGEDB | Msa0369100

M. sativa cultivar zhongmu-4 / Msa0369100

KEGG: K09588|K09590
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009653 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010817 GO:0010927 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0042445 GO:0042446 GO:0042592 GO:0043062 GO:0044085 GO:0044238 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080132 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369100	XP_003600878.1	97.347	490	10	2	1	487	1	490	0.0	973

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369100	sp\|Q42569\|C90A1_ARATH	79.684	443	88	1	25	467	29	469	0.0	734

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369100	G7JB77	97.347	490	10	2	1	487	1	490	0.0	973

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0369100	0.825240	5.222553e-54	-8.615850e-47
Msa0006050	Msa0369100	0.823793	1.143613e-53	-8.615850e-47
Msa0012380	Msa0369100	0.854558	1.136326e-61	-8.615850e-47
Msa0013810	Msa0369100	0.804540	2.057315e-49	-8.615850e-47
Msa0014960	Msa0369100	0.829858	4.068830e-55	-8.615850e-47
Msa0016380	Msa0369100	0.817544	3.120575e-52	-8.615850e-47
Msa0017980	Msa0369100	0.807826	4.182018e-50	-8.615850e-47
Msa0021240	Msa0369100	0.834176	3.487155e-56	-8.615850e-47
Msa0024320	Msa0369100	0.832706	8.110641e-56	-8.615850e-47
Msa0024330	Msa0369100	0.805853	1.092029e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369100	MtrunA17_Chr3g0113321	97.347	490	10	2	1	487	1	490	0.0	973
Msa0369100	MtrunA17_Chr5g0403931	42.105	456	253	8	1	449	11	462	5.11e-125	373
Msa0369100	MtrunA17_Chr8g0341951	37.736	477	273	7	7	467	5	473	8.92e-116	349
Msa0369100	MtrunA17_Chr8g0372411	37.698	443	262	5	28	463	40	475	1.75e-111	338
Msa0369100	MtrunA17_Chr7g0226771	38.512	457	269	5	1	451	5	455	2.56e-111	337
Msa0369100	MtrunA17_Chr8g0373441	42.893	394	213	7	7	392	15	404	3.95e-111	335
Msa0369100	MtrunA17_Chr6g0455461	37.879	462	263	9	1	451	1	449	9.34e-107	325
Msa0369100	MtrunA17_Chr3g0078411	37.662	462	264	9	1	451	1	449	7.76e-105	320
Msa0369100	MtrunA17_Chr7g0219961	36.226	461	271	8	1	451	1	448	1.17e-102	315
Msa0369100	MtrunA17_Chr6g0478161	35.000	480	293	7	4	469	19	493	4.95e-102	314

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369100	AT5G05690.1	79.684	443	88	1	25	467	29	469	0.0	734
Msa0369100	AT5G05690.2	80.381	367	72	0	27	393	31	397	0.0	612
Msa0369100	AT5G05690.3	80.114	352	68	1	116	467	1	350	0.0	575
Msa0369100	AT3G50660.1	39.627	482	257	6	18	465	30	511	9.94e-122	366
Msa0369100	AT4G36380.1	40.263	457	261	7	27	475	69	521	8.41e-112	341
Msa0369100	AT3G13730.1	37.360	447	267	6	26	465	50	490	7.16e-109	332
Msa0369100	AT1G73340.1	36.170	470	286	5	4	467	20	481	2.67e-108	330
Msa0369100	AT3G50660.2	39.558	407	219	5	18	397	30	436	1.22e-101	312
Msa0369100	AT3G13730.2	37.081	418	251	5	26	436	50	462	1.80e-99	307
Msa0369100	AT3G30180.1	36.266	466	277	7	1	459	6	458	4.62e-95	296

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Find 157 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTTGTAAGCATTAC+CGG	0.311379	3_1:-66225102	None:intergenic
AAACTCTCAGTCCATTCATC+TGG	0.430615	3_1:-66220206	None:intergenic
AAATAAATGCTGGGATATTT+TGG	0.139554	3_1:-66217818	None:intergenic
AACCGTACCGGTTCACTCGC+TGG	0.513270	3_1:-66218240	None:intergenic
AACCTTGGCCCTCCTCCAAA+TGG	0.493369	3_1:-66224607	None:intergenic
AACGGTAACCCGAGACTCCC+CGG	0.537541	3_1:-66218154	None:intergenic
AACTCCGTTACTCGAGACTC+CGG	0.611040	3_1:+66218125	Msa0369100:CDS
AAGAAGGTTTGATATTGAAC+CGG	0.424058	3_1:-66218371	None:intergenic
AAGAGCAAGGAGTGAGCCAG+AGG	0.581010	3_1:+66224041	Msa0369100:CDS
AAGGAAGGAGCATTAATGGA+GGG	0.566258	3_1:-66217906	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAAGTGTGTGAATTGTGA+AGG	-	chr3_1:66217928-66217947	None:intergenic	30.0%
AAGAAGGTTTGATATTGAAC+CGG	-	chr3_1:66218374-66218393	None:intergenic	30.0%
ATCTTCTCTTTGATATAGAC+CGG	+	chr3_1:66218488-66218507	Msa0369100:CDS	30.0%
GACAATGCATAATATATGCA+AGG	-	chr3_1:66218756-66218775	None:intergenic	30.0%
TTGCCATCATTATGTCATAT+GGG	+	chr3_1:66218990-66219009	Msa0369100:intron	30.0%
TTCAAATCTAGTTAGACACT+TGG	-	chr3_1:66219140-66219159	None:intergenic	30.0%
TTGAAGTCTCTCTATTAAGT+TGG	+	chr3_1:66219478-66219497	Msa0369100:intron	30.0%
TGAAGTCTCTCTATTAAGTT+GGG	+	chr3_1:66219479-66219498	Msa0369100:intron	30.0%
AGTTATATTAACGTGATGCA+AGG	-	chr3_1:66219675-66219694	None:intergenic	30.0%
GACAATGCATAATATATGCA+AGG	-	chr3_1:66218756-66218775	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66217770	66225186	66217770	ID=Msa0369100;Name=Msa0369100
chr3_1	mRNA	66217770	66225186	66217770	ID=Msa0369100-mRNA-1;Parent=Msa0369100;Name=Msa0369100-mRNA-1;_AED=0.05;_eAED=0.05;_QI=300\|1\|1\|1\|1\|1\|8\|218\|487
chr3_1	exon	66217770	66218573	66217770	ID=Msa0369100-mRNA-1:exon:13369;Parent=Msa0369100-mRNA-1
chr3_1	exon	66220164	66220313	66220164	ID=Msa0369100-mRNA-1:exon:13370;Parent=Msa0369100-mRNA-1
chr3_1	exon	66220643	66220891	66220643	ID=Msa0369100-mRNA-1:exon:13371;Parent=Msa0369100-mRNA-1
chr3_1	exon	66224024	66224110	66224024	ID=Msa0369100-mRNA-1:exon:13372;Parent=Msa0369100-mRNA-1
chr3_1	exon	66224190	66224268	66224190	ID=Msa0369100-mRNA-1:exon:13373;Parent=Msa0369100-mRNA-1
chr3_1	exon	66224361	66224467	66224361	ID=Msa0369100-mRNA-1:exon:13374;Parent=Msa0369100-mRNA-1
chr3_1	exon	66224562	66224698	66224562	ID=Msa0369100-mRNA-1:exon:13375;Parent=Msa0369100-mRNA-1
chr3_1	exon	66224818	66225186	66224818	ID=Msa0369100-mRNA-1:exon:13376;Parent=Msa0369100-mRNA-1
chr3_1	five_prime_UTR	66217770	66218069	66217770	ID=Msa0369100-mRNA-1:five_prime_utr;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66218070	66218573	66218070	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66220164	66220313	66220164	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66220643	66220891	66220643	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66224024	66224110	66224024	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66224190	66224268	66224190	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66224361	66224467	66224361	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66224562	66224698	66224562	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	CDS	66224818	66224968	66224818	ID=Msa0369100-mRNA-1:cds;Parent=Msa0369100-mRNA-1
chr3_1	three_prime_UTR	66224969	66225186	66224969	ID=Msa0369100-mRNA-1:three_prime_utr;Parent=Msa0369100-mRNA-1

Gene Sequence

>Msa0369100

ATGGCTTATTTCCTCTTCTTCATCATCTTCATCTTTTTCCTCTTCCTCCTCAGGAAACTCCGTTACTCGAGACTCCGGCTACCACCGGGGAGTCTCGGGTTACCGTTCATCGGAGAAACTTTACAAATGATATCAGCATACAAGAGTGACAATCCAGAGCCATTCATCGACCAGCGAGTGAACCGGTACGGTTCAATCTTCACTAGCCATGTTTTTGGTGAACCGACAGTTTTTTCTGCTGACCCGGAAACAAACCGGTTTATTATTATGAATGAAGGGAAGCTTTTTGAATGTAGCTACCCCGGTTCAATATCAAACCTTCTTGGAAAACATTCACTGCTTCTTATGAAGGGTTCTCTTCACAAGAAAATGCATTCTCTCACTATGAGTTTTGCTAATTCATCTATTATTAAGGATCATCTTCTCTTTGATATAGACCGGCTCATCCGGCTCAACTTGGATTCTTGGTCCGACCGGGTTCTTCTCATGGAGGAGGCCAAGAAGATAACATTTGAGCTGACAGTTAAACAGCTGATGAGTTTTGATCCAGATGAATGGACTGAGAGTTTAAGGAAAGAGTACATGCTTGTAATTGAAGGGTTTTTCACTCTCCCATTTCCTCTTTTCTCTACCACCTACCGTAGAGCCATCAAGGCAAGAACAAAGGTGGCAGAGGCACTGACACTAGTAGTGAGGCAGAGGAGAAAAGAGAATGAAATAGGCAAAGAGAAAAAGAATGACATGCTTGGAGCATTGTTGGCATCTGGTGAACATTTCTCAGACGAGGAAATAGTTGATTTTATGTTGGCTTTGCTTGTTGCTGGTTATGAAACTACTTCTACTATCATGACTCTTGCCATCAAGTTCCTCACTGAAACTCCTTTAGCCTTGGCACAACTCAAGGAAGAGCATGAGCAGATAAGAGCAAGGAGTGAGCCAGAGGCAGCACTGGAATGGACAGATTACAAGTCAATGACATTTACTCAATGCGTTGTGAATGAGACCTTAAGGGTTGCAAACATAATTGGTGCCATATTTAGGAGAACAACCACAGACATCGACATAAAAGGTTACACAATTCCTAAGGGAATGAAGGTGATTGCATCATTTCGTGCTGTGCATTTGAATCCTGAACATTTCAAAGATGCTCGCACCTTCAATCCATGGAGATGGCAGAATAATAACTCAGAAGCTGTAGCAAGCCCTGGGAATATATTTACACCATTTGGAGGAGGGCCAAGGTTGTGCCCTGGCTATGAGCTTGCCAGAGTTGTGCTTTCGGTCTTCCTTCACCGCACGGTCACTCGCATCAGTTGGGTTCCTGCTGAAGAAGATAAGCTGGTGTTTTTTCCGACCACTAGGACACAGAAGAGGTATCCTATTTTAGTGAAGCGGAGAGAAGAATCCAGATCAAGCATTGGAATTGGATACACAGCAGATACAGGAAGGAAAAAAGAGAGCTGA

Protein sequence

>Msa0369100

MAYFLFFIIFIFFLFLLRKLRYSRLRLPPGSLGLPFIGETLQMISAYKSDNPEPFIDQRVNRYGSIFTSHVFGEPTVFSADPETNRFIIMNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKKMHSLTMSFANSSIIKDHLLFDIDRLIRLNLDSWSDRVLLMEEAKKITFELTVKQLMSFDPDEWTESLRKEYMLVIEGFFTLPFPLFSTTYRRAIKARTKVAEALTLVVRQRRKENEIGKEKKNDMLGALLASGEHFSDEEIVDFMLALLVAGYETTSTIMTLAIKFLTETPLALAQLKEEHEQIRARSEPEAALEWTDYKSMTFTQCVVNETLRVANIIGAIFRRTTTDIDIKGYTIPKGMKVIASFRAVHLNPEHFKDARTFNPWRWQNNNSEAVASPGNIFTPFGGGPRLCPGYELARVVLSVFLHRTVTRISWVPAEEDKLVFFPTTRTQKRYPILVKRREESRSSIGIGYTADTGRKKES*