Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820520 | XP_003617079.1 | 96.658 | 389 | 13 | 0 | 1 | 389 | 3 | 391 | 0.0 | 769 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820520 | sp|Q9FH04|ADHL7_ARATH | 71.277 | 376 | 107 | 1 | 13 | 387 | 14 | 389 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820520 | G7K2X3 | 96.658 | 389 | 13 | 0 | 1 | 389 | 3 | 391 | 0.0 | 769 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0820520 | 0.818334 | 2.069191e-52 | -8.615850e-47 |
| Msa0044180 | Msa0820520 | 0.804832 | 1.787235e-49 | -8.615850e-47 |
| Msa0064550 | Msa0820520 | 0.819451 | 1.153640e-52 | -8.615850e-47 |
| Msa0108070 | Msa0820520 | 0.811509 | 6.754966e-51 | -8.615850e-47 |
| Msa0109490 | Msa0820520 | 0.803608 | 3.214814e-49 | -8.615850e-47 |
| Msa0605250 | Msa0820520 | 0.818533 | 1.865165e-52 | -8.615850e-47 |
| Msa0646190 | Msa0820520 | 0.807291 | 5.430349e-50 | -8.615850e-47 |
| Msa0649310 | Msa0820520 | 0.808863 | 2.513114e-50 | -8.615850e-47 |
| Msa0709660 | Msa0820520 | 0.818566 | 1.833432e-52 | -8.615850e-47 |
| Msa0740210 | Msa0820520 | 0.910801 | 1.246890e-82 | -8.615850e-47 |
| Msa0781390 | Msa0820520 | 0.908750 | 1.214581e-81 | -8.615850e-47 |
| Msa0820520 | Msa0860920 | 0.921328 | 4.119566e-88 | -8.615850e-47 |
| Msa0820520 | Msa0968780 | 0.803905 | 2.789032e-49 | -8.615850e-47 |
| Msa0820520 | Msa0984000 | 0.807292 | 5.428427e-50 | -8.615850e-47 |
| Msa0820520 | Msa1137940 | 0.820914 | 5.331671e-53 | -8.615850e-47 |
| Msa0820520 | Msa1144730 | 0.818356 | 2.046288e-52 | -8.615850e-47 |
| Msa0820520 | Msa1173380 | 0.805140 | 1.541457e-49 | -8.615850e-47 |
| Msa0820520 | Msa1180050 | 0.829295 | 5.576933e-55 | -8.615850e-47 |
| Msa0820520 | Msa1198720 | 0.831374 | 1.731198e-55 | -8.615850e-47 |
| Msa0820520 | Msa1232270 | 0.829651 | 4.570105e-55 | -8.615850e-47 |
| Msa0820520 | Msa1270770 | 0.828204 | 1.023748e-54 | -8.615850e-47 |
| Msa0820520 | Msa1313050 | 0.831504 | 1.607768e-55 | -8.615850e-47 |
| Msa0820520 | Msa1354090 | 0.802466 | 5.535757e-49 | -8.615850e-47 |
| Msa0820520 | Msa1359890 | 0.805606 | 1.230849e-49 | -8.615850e-47 |
| Msa0820520 | Msa1394900 | 0.823211 | 1.565344e-53 | -8.615850e-47 |
| Msa0820520 | Msa1459540 | 0.802724 | 4.896583e-49 | -8.615850e-47 |
| Msa0154200 | Msa0820520 | 0.808525 | 2.967528e-50 | -8.615850e-47 |
| Msa0154220 | Msa0820520 | 0.805296 | 1.429711e-49 | -8.615850e-47 |
| Msa0154270 | Msa0820520 | 0.858143 | 1.008292e-62 | -8.615850e-47 |
| Msa0183560 | Msa0820520 | 0.807007 | 6.238049e-50 | -8.615850e-47 |
| Msa0197030 | Msa0820520 | 0.828074 | 1.100471e-54 | -8.615850e-47 |
| Msa0392050 | Msa0820520 | 0.818122 | 2.310782e-52 | -8.615850e-47 |
| Msa0401340 | Msa0820520 | 0.801396 | 9.185918e-49 | -8.615850e-47 |
| Msa0412190 | Msa0820520 | 0.839388 | 1.632593e-57 | -8.615850e-47 |
| Msa0435010 | Msa0820520 | 0.831299 | 1.805702e-55 | -8.615850e-47 |
| Msa0469950 | Msa0820520 | 0.817296 | 3.548836e-52 | -8.615850e-47 |
| Msa0479030 | Msa0820520 | 0.811323 | 7.413860e-51 | -8.615850e-47 |
| Msa0479100 | Msa0820520 | 0.829119 | 6.151419e-55 | -8.615850e-47 |
| Msa0344680 | Msa0820520 | 0.818287 | 2.120489e-52 | -8.615850e-47 |
| Msa0525270 | Msa0820520 | 0.801307 | 9.577420e-49 | -8.615850e-47 |
| Msa0525280 | Msa0820520 | 0.803561 | 3.287201e-49 | -8.615850e-47 |
| Msa0549540 | Msa0820520 | 0.815731 | 7.956487e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820520 | MtrunA17_Chr5g0440521 | 96.658 | 389 | 13 | 0 | 1 | 389 | 3 | 391 | 0.0 | 769 |
| Msa0820520 | MtrunA17_Chr3g0118441 | 75.584 | 385 | 93 | 1 | 6 | 389 | 2 | 386 | 0.0 | 618 |
| Msa0820520 | MtrunA17_Chr3g0132351 | 61.640 | 378 | 141 | 3 | 14 | 388 | 14 | 390 | 3.78e-164 | 465 |
| Msa0820520 | MtrunA17_Chr3g0118431 | 79.705 | 271 | 55 | 0 | 109 | 379 | 20 | 290 | 5.36e-163 | 458 |
| Msa0820520 | MtrunA17_Chr1g0183131 | 51.337 | 374 | 180 | 2 | 14 | 387 | 6 | 377 | 1.59e-134 | 389 |
| Msa0820520 | MtrunA17_Chr6g0478081 | 49.869 | 383 | 186 | 4 | 7 | 389 | 1 | 377 | 1.72e-129 | 377 |
| Msa0820520 | MtrunA17_Chr7g0262421 | 49.340 | 379 | 190 | 2 | 7 | 385 | 1 | 377 | 2.33e-128 | 374 |
| Msa0820520 | MtrunA17_Chr3g0125911 | 45.550 | 382 | 204 | 4 | 9 | 389 | 2 | 380 | 5.29e-122 | 358 |
| Msa0820520 | MtrunA17_Chr3g0125961 | 45.867 | 375 | 199 | 4 | 14 | 387 | 7 | 378 | 4.18e-121 | 355 |
| Msa0820520 | MtrunA17_Chr3g0125941 | 45.623 | 377 | 201 | 4 | 14 | 389 | 8 | 381 | 4.11e-120 | 353 |
| Msa0820520 | MtrunA17_Chr7g0242291 | 47.619 | 378 | 192 | 5 | 14 | 387 | 18 | 393 | 2.79e-116 | 343 |
| Msa0820520 | MtrunA17_Chr4g0021211 | 44.327 | 379 | 203 | 5 | 10 | 387 | 27 | 398 | 2.30e-105 | 316 |
| Msa0820520 | MtrunA17_Chr5g0419681 | 44.211 | 380 | 203 | 7 | 10 | 387 | 2 | 374 | 1.78e-104 | 313 |
| Msa0820520 | MtrunA17_Chr7g0242301 | 43.733 | 359 | 165 | 4 | 32 | 387 | 1 | 325 | 5.87e-94 | 284 |
| Msa0820520 | MtrunA17_Chr8g0385221 | 30.971 | 381 | 244 | 12 | 15 | 385 | 51 | 422 | 2.76e-38 | 142 |
| Msa0820520 | MtrunA17_Chr6g0474141 | 25.217 | 345 | 219 | 11 | 42 | 378 | 39 | 352 | 4.43e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0820520 | AT5G42250.1 | 71.277 | 376 | 107 | 1 | 13 | 387 | 14 | 389 | 0.0 | 572 |
| Msa0820520 | AT1G22430.2 | 59.383 | 389 | 154 | 4 | 3 | 389 | 2 | 388 | 4.03e-170 | 481 |
| Msa0820520 | AT1G22430.1 | 59.383 | 389 | 154 | 4 | 3 | 389 | 2 | 388 | 4.03e-170 | 481 |
| Msa0820520 | AT4G22110.2 | 60.358 | 391 | 151 | 4 | 1 | 389 | 1 | 389 | 2.86e-169 | 478 |
| Msa0820520 | AT4G22110.1 | 60.358 | 391 | 151 | 4 | 1 | 389 | 1 | 389 | 2.86e-169 | 478 |
| Msa0820520 | AT1G22440.1 | 59.897 | 389 | 150 | 5 | 3 | 389 | 2 | 386 | 5.27e-167 | 473 |
| Msa0820520 | AT5G43940.1 | 51.344 | 372 | 179 | 2 | 14 | 385 | 6 | 375 | 2.59e-136 | 394 |
| Msa0820520 | AT5G43940.2 | 50.820 | 366 | 178 | 2 | 20 | 385 | 24 | 387 | 1.36e-132 | 385 |
| Msa0820520 | AT5G24760.1 | 49.482 | 386 | 187 | 5 | 6 | 389 | 2 | 381 | 1.34e-130 | 380 |
| Msa0820520 | AT1G22430.3 | 61.017 | 295 | 112 | 3 | 3 | 295 | 2 | 295 | 4.92e-128 | 371 |
| Msa0820520 | AT1G77120.1 | 47.326 | 374 | 195 | 2 | 14 | 387 | 6 | 377 | 4.47e-124 | 363 |
| Msa0820520 | AT1G64710.1 | 48.533 | 375 | 188 | 5 | 16 | 387 | 8 | 380 | 9.18e-124 | 362 |
| Msa0820520 | AT5G24760.2 | 50.000 | 358 | 173 | 4 | 32 | 389 | 1 | 352 | 1.09e-122 | 359 |
| Msa0820520 | AT5G24760.3 | 50.000 | 358 | 173 | 4 | 32 | 389 | 1 | 352 | 1.09e-122 | 359 |
| Msa0820520 | AT1G32780.1 | 48.177 | 384 | 187 | 6 | 16 | 389 | 9 | 390 | 1.32e-117 | 347 |
| Msa0820520 | AT1G64710.2 | 47.911 | 359 | 182 | 5 | 32 | 387 | 1 | 357 | 4.89e-117 | 345 |
| Msa0820520 | AT1G22430.4 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 1.33e-112 | 331 |
| Msa0820520 | AT1G22430.5 | 59.259 | 270 | 107 | 3 | 3 | 270 | 2 | 270 | 1.33e-112 | 331 |
| Msa0820520 | AT4G22110.3 | 62.172 | 267 | 98 | 3 | 1 | 265 | 1 | 266 | 4.62e-112 | 329 |
| Msa0820520 | AT1G64710.3 | 47.403 | 308 | 158 | 4 | 82 | 387 | 6 | 311 | 6.73e-98 | 294 |
| Msa0820520 | AT5G24760.4 | 49.259 | 270 | 134 | 3 | 120 | 389 | 1 | 267 | 1.80e-86 | 263 |
| Msa0820520 | AT5G63620.1 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 1.13e-37 | 141 |
| Msa0820520 | AT5G63620.2 | 28.261 | 368 | 250 | 8 | 19 | 379 | 57 | 417 | 2.24e-37 | 140 |
| Msa0820520 | AT5G63620.3 | 29.461 | 241 | 163 | 3 | 19 | 253 | 57 | 296 | 1.15e-26 | 108 |
| Msa0820520 | AT5G51970.1 | 24.650 | 357 | 219 | 12 | 36 | 378 | 34 | 354 | 2.13e-19 | 89.4 |
| Msa0820520 | AT5G51970.2 | 24.650 | 357 | 219 | 12 | 36 | 378 | 34 | 354 | 2.13e-19 | 89.4 |
| Msa0820520 | AT4G37990.1 | 23.565 | 331 | 212 | 9 | 44 | 364 | 35 | 334 | 6.18e-11 | 63.9 |
| Msa0820520 | AT4G37970.3 | 28.571 | 147 | 88 | 3 | 44 | 188 | 40 | 171 | 8.97e-11 | 62.4 |
| Msa0820520 | AT4G37970.2 | 28.571 | 147 | 88 | 3 | 44 | 188 | 40 | 171 | 9.31e-11 | 62.4 |
Find 89 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACACACCTTTACATCTTA+TGG | 0.127584 | 5_3:+57892759 | None:intergenic |
| ACTCTTATGGGGTCTATATT+TGG | 0.200744 | 5_3:-57890004 | Msa0820520:CDS |
| TTATTATCAGGAACTCAATT+TGG | 0.208168 | 5_3:-57889774 | Msa0820520:intron |
| TGTGGAGCAACTAGGATTAT+AGG | 0.276027 | 5_3:-57890813 | Msa0820520:CDS |
| AGTATCCCTGTTTATTTAGA+AGG | 0.280450 | 5_3:-57893133 | Msa0820520:intron |
| CTTTACATCTTATGGGTTGC+TGG | 0.294417 | 5_3:+57892767 | None:intergenic |
| CTTTATTCAGCGAAGAAGTT+TGG | 0.298247 | 5_3:-57890638 | Msa0820520:intron |
| ACTAGATTCACTGATCTAAA+TGG | 0.304247 | 5_3:-57891521 | Msa0820520:CDS |
| CTTTGTAAATCCTGGAGAAT+TGG | 0.307283 | 5_3:-57890606 | Msa0820520:CDS |
| TAAGAGTCTTCCCTTGAAAA+AGG | 0.321797 | 5_3:+57890020 | None:intergenic |
| AACACACCTTTACATCTTAT+GGG | 0.322640 | 5_3:+57892760 | None:intergenic |
| ATAATACCTTCTAAATAAAC+AGG | 0.325962 | 5_3:+57893127 | None:intergenic |
| TTTCAAGGGAAGACTCTTAT+GGG | 0.369580 | 5_3:-57890016 | Msa0820520:CDS |
| ATCCAACAATTCCTCCCAAC+AGG | 0.379793 | 5_3:-57891418 | Msa0820520:CDS |
| CATAGTTATCCCAATCTTCA+TGG | 0.380845 | 5_3:-57891642 | Msa0820520:CDS |
| AATGTCTTCGGTGTGTGATT+TGG | 0.385429 | 5_3:-57889682 | Msa0820520:CDS |
| GCCCTGTTGGGAGGAATTGT+TGG | 0.392172 | 5_3:+57891416 | None:intergenic |
| CTCAGTTGTGGTGTATCAAC+AGG | 0.395594 | 5_3:-57891386 | Msa0820520:intron |
| TCACAATCAGCCATGAAGAT+TGG | 0.401526 | 5_3:+57891632 | None:intergenic |
| GAAAACAGCAAATGTTGAAC+CGG | 0.406203 | 5_3:-57891258 | Msa0820520:CDS |
| TGGATCAATCTTGAGTAGAT+TGG | 0.410420 | 5_3:+57891436 | None:intergenic |
| TTACATATTGACATAATTCA+AGG | 0.418523 | 5_3:+57889618 | None:intergenic |
| CACAATCAGCCATGAAGATT+GGG | 0.418681 | 5_3:+57891633 | None:intergenic |
| CCTTCACTTGTTGCTACAGC+AGG | 0.419923 | 5_3:+57892790 | None:intergenic |
| TACTGGGTCATGAGGCAATT+GGG | 0.421956 | 5_3:-57892225 | Msa0820520:intron |
| GCTGAAGGAGCTAGACTTTG+TGG | 0.441563 | 5_3:-57890831 | Msa0820520:CDS |
| GTCACAGACTTTGTAAATCC+TGG | 0.452717 | 5_3:-57890614 | Msa0820520:CDS |
| GGAAAACAAATCTGTGAGTC+AGG | 0.454117 | 5_3:-57890585 | Msa0820520:CDS |
| ATCCAAGGTTTAATATCAAA+AGG | 0.456805 | 5_3:+57891560 | None:intergenic |
| AACTAGAGACAAATATGAAA+TGG | 0.460302 | 5_3:+57891486 | None:intergenic |
| CTGAGGAGGCATGCCCTGTT+GGG | 0.462513 | 5_3:+57891404 | None:intergenic |
| GCCTCATGACCCAGTATCCT+TGG | 0.463153 | 5_3:+57892232 | None:intergenic |
| TGACTAAAGGAGAATGTCTT+CGG | 0.469794 | 5_3:-57889694 | Msa0820520:CDS |
| TCAATAATCAGTGGCTCACC+TGG | 0.476109 | 5_3:+57892514 | None:intergenic |
| TACAGCAGGTTTATCTTCCA+TGG | 0.480785 | 5_3:+57892804 | None:intergenic |
| ATGTGTTGGTATGGCATCAT+TGG | 0.482347 | 5_3:-57890519 | Msa0820520:CDS |
| GATTATTGAGGAGATCTTTG+TGG | 0.489087 | 5_3:-57892500 | Msa0820520:CDS |
| CTAGACTTTGTGGAGCAACT+AGG | 0.495288 | 5_3:-57890821 | Msa0820520:CDS |
| TTGATACTCAACTTAGATCC+TGG | 0.495669 | 5_3:+57890055 | None:intergenic |
| CTAGCTTCATGTGGCATTGG+TGG | 0.495830 | 5_3:+57892475 | None:intergenic |
| TTGCTTTGAATGTGTTGGTA+TGG | 0.503086 | 5_3:-57890528 | Msa0820520:CDS |
| ACTGAGGAGGCATGCCCTGT+TGG | 0.511132 | 5_3:+57891403 | None:intergenic |
| CTTATGGGGTCTATATTTGG+AGG | 0.514741 | 5_3:-57890001 | Msa0820520:CDS |
| AGCATATGCTTCATGTAGAA+AGG | 0.522535 | 5_3:-57890489 | Msa0820520:intron |
| GAAGTAACAGAAGTTACAAA+GGG | 0.527117 | 5_3:-57891668 | Msa0820520:CDS |
| ATCCTAGCTTCATGTGGCAT+TGG | 0.528211 | 5_3:+57892472 | None:intergenic |
| ATACTGGGTCATGAGGCAAT+TGG | 0.530290 | 5_3:-57892226 | Msa0820520:CDS |
| AGATCAAATATAGAAGTAAG+AGG | 0.536967 | 5_3:+57889581 | None:intergenic |
| TCCATGGCGATGATGAGTCA+AGG | 0.537475 | 5_3:+57892820 | None:intergenic |
| CAGCAACCCATAAGATGTAA+AGG | 0.539746 | 5_3:-57892766 | Msa0820520:intron |
| GATTATTGCTTTGAATGTGT+TGG | 0.539967 | 5_3:-57890533 | Msa0820520:CDS |
| GGAAGTAACAGAAGTTACAA+AGG | 0.541099 | 5_3:-57891669 | Msa0820520:CDS |
| AGGGCATGCCTCCTCAGTTG+TGG | 0.551435 | 5_3:-57891398 | Msa0820520:CDS |
| ATGTTAGGAGTGGACAAGCC+AGG | 0.552820 | 5_3:-57890073 | Msa0820520:CDS |
| CCCTTGACTCATCATCGCCA+TGG | 0.554070 | 5_3:-57892821 | Msa0820520:exon |
| ATTGTTTCCTAGGTGGCTGA+AGG | 0.554628 | 5_3:-57890846 | Msa0820520:intron |
| ACTCGGATGTATTGGATTAG+CGG | 0.554730 | 5_3:-57891213 | Msa0820520:intron |
| TACATATTGACATAATTCAA+GGG | 0.556010 | 5_3:+57889619 | None:intergenic |
| AAGAACGGGTACATCAGACT+TGG | 0.560726 | 5_3:+57889970 | None:intergenic |
| TCCAAGGATACTGGGTCATG+AGG | 0.566290 | 5_3:-57892233 | Msa0820520:CDS |
| GTTATCATAGAGATGACTGA+TGG | 0.568363 | 5_3:-57890563 | Msa0820520:CDS |
| GCTGCGGTTTGTCGCAAACC+AGG | 0.570156 | 5_3:-57892532 | Msa0820520:CDS |
| CACCAATGCCACATGAAGCT+AGG | 0.581082 | 5_3:-57892474 | Msa0820520:CDS |
| AAAACAGCAAATGTTGAACC+GGG | 0.583487 | 5_3:-57891257 | Msa0820520:CDS |
| AGGAGGCATGCCCTGTTGGG+AGG | 0.588882 | 5_3:+57891407 | None:intergenic |
| CAAAAGGAAACTTTGAACAA+AGG | 0.590036 | 5_3:+57891576 | None:intergenic |
| TCTTCGGTGTGTGATTTGGA+TGG | 0.597231 | 5_3:-57889678 | Msa0820520:CDS |
| AGCAACTAGGATTATAGGTG+TGG | 0.598387 | 5_3:-57890808 | Msa0820520:CDS |
| TCCAGGGTTGTGGAAAGTGT+TGG | 0.599735 | 5_3:-57891695 | Msa0820520:intron |
| GATATCACTGTGACAAAGAG+AGG | 0.603012 | 5_3:+57892435 | None:intergenic |
| AGAACGGGTACATCAGACTT+GGG | 0.607717 | 5_3:+57889971 | None:intergenic |
| AGGTGAGCCACTGATTATTG+AGG | 0.608296 | 5_3:-57892512 | Msa0820520:CDS |
| TTCAAGGGAAGACTCTTATG+GGG | 0.612341 | 5_3:-57890015 | Msa0820520:CDS |
| CCTGCTGTAGCAACAAGTGA+AGG | 0.614035 | 5_3:-57892790 | Msa0820520:CDS |
| CCATGGCGATGATGAGTCAA+GGG | 0.616544 | 5_3:+57892821 | None:intergenic |
| GGCGATGATGAGTCAAGGGA+GGG | 0.626165 | 5_3:+57892825 | None:intergenic |
| GGTTGTGGAAAGTGTTGGAG+AGG | 0.628245 | 5_3:-57891690 | Msa0820520:CDS |
| AAAATAGCTACTGTCGACCC+CGG | 0.636859 | 5_3:+57891239 | None:intergenic |
| TCCAACAATTCCTCCCAACA+GGG | 0.637346 | 5_3:-57891417 | Msa0820520:CDS |
| ATCATAGAGATGACTGATGG+AGG | 0.637658 | 5_3:-57890560 | Msa0820520:CDS |
| AAGATCTCCTCAATAATCAG+TGG | 0.639801 | 5_3:+57892505 | None:intergenic |
| TTGATACACCACAACTGAGG+AGG | 0.646650 | 5_3:+57891390 | None:intergenic |
| ATTTAGATCAGTGAATCTAG+TGG | 0.650022 | 5_3:+57891523 | None:intergenic |
| GTATCATATCTAAGCATCCA+AGG | 0.653021 | 5_3:+57891545 | None:intergenic |
| TGGCGATGATGAGTCAAGGG+AGG | 0.660421 | 5_3:+57892824 | None:intergenic |
| ATACGAATCCTAGCTTCATG+TGG | 0.667924 | 5_3:+57892466 | None:intergenic |
| TAATACCTTCTAAATAAACA+GGG | 0.670853 | 5_3:+57893128 | None:intergenic |
| CTGTTGATACACCACAACTG+AGG | 0.718420 | 5_3:+57891387 | None:intergenic |
| AAACAGCAAATGTTGAACCG+GGG | 0.725303 | 5_3:-57891256 | Msa0820520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATCAAATTAAATTGAA+TGG | + | chr5_3:57890119-57890138 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTACTTTTGA+AGG | - | chr5_3:57890477-57890496 | Msa0820520:intron | 10.0% |
| !! | AACAAAAGATAAAATATAAT+TGG | + | chr5_3:57891762-57891781 | None:intergenic | 10.0% |
| !!! | AAAAATCAAAGTATCTTTTT+AGG | - | chr5_3:57889564-57889583 | Msa0820520:three_prime_UTR | 15.0% |
| !!! | TAAGCAAATTTTTACATTTT+AGG | + | chr5_3:57889766-57889785 | None:intergenic | 15.0% |
| !!! | TAATATTTTTGATAGTGAAA+GGG | + | chr5_3:57889821-57889840 | None:intergenic | 15.0% |
| !!! | ATAATATTTTTGATAGTGAA+AGG | + | chr5_3:57889822-57889841 | None:intergenic | 15.0% |
| !!! | AAAATATATTTTGGAGATTT+TGG | + | chr5_3:57889855-57889874 | None:intergenic | 15.0% |
| !!! | ATGTAACTGAAAATATATTT+TGG | + | chr5_3:57889864-57889883 | None:intergenic | 15.0% |
| !! | ATACAAATTAATAAAATGCA+TGG | + | chr5_3:57890559-57890578 | None:intergenic | 15.0% |
| !!! | TTTATCAAACATCAATTTTT+AGG | - | chr5_3:57891453-57891472 | Msa0820520:CDS | 15.0% |
| !!! | TTATCAAACATCAATTTTTA+GGG | - | chr5_3:57891454-57891473 | Msa0820520:CDS | 15.0% |
| !! | AATCAAAAAAAGAAATTACA+TGG | + | chr5_3:57892829-57892848 | None:intergenic | 15.0% |
| !!! | TAGTAATGTAAACAAATTTT+TGG | - | chr5_3:57892924-57892943 | Msa0820520:intron | 15.0% |
| !! | TAATACCTTCTAAATAAACA+GGG | + | chr5_3:57889624-57889643 | None:intergenic | 20.0% |
| !! | ATAATACCTTCTAAATAAAC+AGG | + | chr5_3:57889625-57889644 | None:intergenic | 20.0% |
| !!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr5_3:57889698-57889717 | Msa0820520:CDS | 20.0% |
| !!! | GTTATGTTTTAATGAGTTAT+GGG | + | chr5_3:57890024-57890043 | None:intergenic | 20.0% |
| !!! | AGTTATGTTTTAATGAGTTA+TGG | + | chr5_3:57890025-57890044 | None:intergenic | 20.0% |
| !!! | TGTAATAGTTTTTTTTGTGA+AGG | - | chr5_3:57890071-57890090 | Msa0820520:CDS | 20.0% |
| !! | ATATTTCTCATTTCCTAATT+AGG | - | chr5_3:57890599-57890618 | Msa0820520:CDS | 20.0% |
| !! | TGTAATGTTTATAATGTACT+TGG | - | chr5_3:57890885-57890904 | Msa0820520:intron | 20.0% |
| !!! | AATTAATTTTTATGTGATCC+AGG | - | chr5_3:57891037-57891056 | Msa0820520:intron | 20.0% |
| !!! | ATTAATTTTTATGTGATCCA+GGG | - | chr5_3:57891038-57891057 | Msa0820520:intron | 20.0% |
| !!! | TATCAAACATCAATTTTTAG+GGG | - | chr5_3:57891455-57891474 | Msa0820520:CDS | 20.0% |
| !!! | TTACCAATTTCAAATTTTTC+TGG | + | chr5_3:57891975-57891994 | None:intergenic | 20.0% |
| !!! | CTTTATTTTAACCATGTTAT+TGG | - | chr5_3:57892336-57892355 | Msa0820520:intron | 20.0% |
| !!! | CAAATTTTTGGACTTTTTTT+TGG | - | chr5_3:57892936-57892955 | Msa0820520:intron | 20.0% |
| !!! | TTTTTTCTCCAATTATTATC+AGG | - | chr5_3:57892963-57892982 | Msa0820520:intron | 20.0% |
| !! | TACATATTGACATAATTCAA+GGG | + | chr5_3:57893133-57893152 | None:intergenic | 20.0% |
| !! | TTACATATTGACATAATTCA+AGG | + | chr5_3:57893134-57893153 | None:intergenic | 20.0% |
| ! | ATATTATATACTACTCCTTC+CGG | - | chr5_3:57889666-57889685 | Msa0820520:exon | 25.0% |
| !! | AATTTGCTTATTATAGTGAC+CGG | + | chr5_3:57889688-57889707 | None:intergenic | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr5_3:57889776-57889795 | Msa0820520:intron | 25.0% |
| ! | AAGTAATAAAATACTCCATC+CGG | + | chr5_3:57889798-57889817 | None:intergenic | 25.0% |
| !!! | TATCATTTTTTGGAAAATGC+AGG | - | chr5_3:57890333-57890352 | Msa0820520:intron | 25.0% |
| ! | TATTTGTTCGGATTGTTAAA+CGG | + | chr5_3:57890950-57890969 | None:intergenic | 25.0% |
| !! | TTCCTTTTGATATTAAACCT+TGG | - | chr5_3:57891187-57891206 | Msa0820520:intron | 25.0% |
| ! | ATCCAAGGTTTAATATCAAA+AGG | + | chr5_3:57891192-57891211 | None:intergenic | 25.0% |
| ! | AACTAGAGACAAATATGAAA+TGG | + | chr5_3:57891266-57891285 | None:intergenic | 25.0% |
| ! | CAAAACGAAAACATAAACTA+AGG | + | chr5_3:57891572-57891591 | None:intergenic | 25.0% |
| !! | TATGTTTTCGTTTTGTAGTT+TGG | - | chr5_3:57891577-57891596 | Msa0820520:CDS | 25.0% |
| !! | ATGTTTTCGTTTTGTAGTTT+GGG | - | chr5_3:57891578-57891597 | Msa0820520:CDS | 25.0% |
| ! | TTTAGCATACAAAACTACAA+AGG | + | chr5_3:57891866-57891885 | None:intergenic | 25.0% |
| ! | TTGTAATTGAATTGTTTCCT+AGG | - | chr5_3:57891893-57891912 | Msa0820520:intron | 25.0% |
| !! | AAGCCAGAAAAATTTGAAAT+TGG | - | chr5_3:57891969-57891988 | Msa0820520:intron | 25.0% |
| ! | ATTGTGGATGAAAAAAAATG+TGG | + | chr5_3:57892452-57892471 | None:intergenic | 25.0% |
| !!! | AAAATTGGTGTTTTGATTTC+AGG | - | chr5_3:57892636-57892655 | Msa0820520:intron | 25.0% |
| !!! | AAATTGGTGTTTTGATTTCA+GGG | - | chr5_3:57892637-57892656 | Msa0820520:intron | 25.0% |
| ! | AAAAACAATTATGTTAGGAG+TGG | - | chr5_3:57892666-57892685 | Msa0820520:intron | 25.0% |
| ! | ATAAAATGTTACCAAAAGAG+AGG | + | chr5_3:57892872-57892891 | None:intergenic | 25.0% |
| ! | ATTGAGTTCCTGATAATAAT+TGG | + | chr5_3:57892974-57892993 | None:intergenic | 25.0% |
| ! | TTATTATCAGGAACTCAATT+TGG | - | chr5_3:57892975-57892994 | Msa0820520:intron | 25.0% |
| !!! | GCTTTTGATTTATTGACTAA+AGG | - | chr5_3:57893042-57893061 | Msa0820520:intron | 25.0% |
| ! | AGATCAAATATAGAAGTAAG+AGG | + | chr5_3:57893171-57893190 | None:intergenic | 25.0% |
| AGTATCCCTGTTTATTTAGA+AGG | - | chr5_3:57889616-57889635 | Msa0820520:three_prime_UTR | 30.0% | |
| GGAAGGAGTAGTATATAATA+TGG | + | chr5_3:57889667-57889686 | None:intergenic | 30.0% | |
| !! | TTTTGGAGATTTTGGAGAAA+GGG | + | chr5_3:57889847-57889866 | None:intergenic | 30.0% |
| !! | ATTTTGGAGATTTTGGAGAA+AGG | + | chr5_3:57889848-57889867 | None:intergenic | 30.0% |
| AACACACCTTTACATCTTAT+GGG | + | chr5_3:57889992-57890011 | None:intergenic | 30.0% | |
| AAACACACCTTTACATCTTA+TGG | + | chr5_3:57889993-57890012 | None:intergenic | 30.0% | |
| ! | ATTTGCAAATTTTGTAGCTG+CGG | - | chr5_3:57890201-57890220 | Msa0820520:intron | 30.0% |
| !!! | GTCACAGTGATATCATTTTT+TGG | - | chr5_3:57890323-57890342 | Msa0820520:intron | 30.0% |
| CTCATTTCCTAATTAGGTAA+AGG | - | chr5_3:57890605-57890624 | Msa0820520:CDS | 30.0% | |
| TTTCCTAATTAGGTAAAGGA+AGG | - | chr5_3:57890609-57890628 | Msa0820520:CDS | 30.0% | |
| GTTAGCTCAAATAATGAAAG+TGG | + | chr5_3:57890825-57890844 | None:intergenic | 30.0% | |
| AATATCGCGTTAAACAGAAT+TGG | + | chr5_3:57890863-57890882 | None:intergenic | 30.0% | |
| !! | TCAAAAATTGGTAACGATGA+AGG | + | chr5_3:57890914-57890933 | None:intergenic | 30.0% |
| AACAATCCGAACAAATATGT+TGG | - | chr5_3:57890953-57890972 | Msa0820520:intron | 30.0% | |
| ATGAGACCAACATATTTGTT+CGG | + | chr5_3:57890962-57890981 | None:intergenic | 30.0% | |
| GAAGTAACAGAAGTTACAAA+GGG | - | chr5_3:57891081-57891100 | Msa0820520:intron | 30.0% | |
| CAAAAGGAAACTTTGAACAA+AGG | + | chr5_3:57891176-57891195 | None:intergenic | 30.0% | |
| ATTTAGATCAGTGAATCTAG+TGG | + | chr5_3:57891229-57891248 | None:intergenic | 30.0% | |
| ACTAGATTCACTGATCTAAA+TGG | - | chr5_3:57891228-57891247 | Msa0820520:CDS | 30.0% | |
| !!! | TAGTTTTAGTGAGTATACTG+TGG | - | chr5_3:57891281-57891300 | Msa0820520:intron | 30.0% |
| !! | AAACATCAATTTTTAGGGGT+AGG | - | chr5_3:57891459-57891478 | Msa0820520:CDS | 30.0% |
| GTAGATAAGCTCAAATAAGT+CGG | + | chr5_3:57891614-57891633 | None:intergenic | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | - | chr5_3:57891614-57891633 | Msa0820520:CDS | 30.0% | |
| GTTGTTCTCATAGACTATTA+TGG | + | chr5_3:57891717-57891736 | None:intergenic | 30.0% | |
| ! | AAAACTACAAAGGTTTTGCT+TGG | + | chr5_3:57891856-57891875 | None:intergenic | 30.0% |
| TAATTGAATTGTTTCCTAGG+TGG | - | chr5_3:57891896-57891915 | Msa0820520:intron | 30.0% | |
| AAACTTCTTCGCTGAATAAA+GGG | + | chr5_3:57892112-57892131 | None:intergenic | 30.0% | |
| ! | GATTATTGCTTTGAATGTGT+TGG | - | chr5_3:57892216-57892235 | Msa0820520:intron | 30.0% |
| AGATTAGTAATCGGCAAAAT+CGG | + | chr5_3:57892375-57892394 | None:intergenic | 30.0% | |
| TGAAAAAAAATGTGGTTGGA+AGG | + | chr5_3:57892444-57892463 | None:intergenic | 30.0% | |
| TGGATGAAAAAAAATGTGGT+TGG | + | chr5_3:57892448-57892467 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCATCCACAATGCT+TGG | - | chr5_3:57892455-57892474 | Msa0820520:CDS | 30.0% |
| TTGCACACAAATGAAGAATA+TGG | + | chr5_3:57892564-57892583 | None:intergenic | 30.0% | |
| ! | TACTTGTTGAAAGAATGGAT+TGG | - | chr5_3:57892613-57892632 | Msa0820520:intron | 30.0% |
| !! | GAAAGAATGGATTGGAAAAT+TGG | - | chr5_3:57892621-57892640 | Msa0820520:intron | 30.0% |
| TGGGGAAAAACAATTATGTT+AGG | - | chr5_3:57892661-57892680 | Msa0820520:intron | 30.0% | |
| ATGTAGCGTTTAAAAAGAAC+GGG | + | chr5_3:57892796-57892815 | None:intergenic | 30.0% | |
| CATGTAGCGTTTAAAAAGAA+CGG | + | chr5_3:57892797-57892816 | None:intergenic | 30.0% | |
| AAGATCTCCTCAATAATCAG+TGG | + | chr5_3:57890247-57890266 | None:intergenic | 35.0% | |
| GATTATTGAGGAGATCTTTG+TGG | - | chr5_3:57890249-57890268 | Msa0820520:intron | 35.0% | |
| AGTATCCTTGGAAAAATTGC+AGG | + | chr5_3:57890508-57890527 | None:intergenic | 35.0% | |
| ! | TGCAATTTTTCCAAGGATAC+TGG | - | chr5_3:57890507-57890526 | Msa0820520:CDS | 35.0% |
| ! | GCAATTTTTCCAAGGATACT+GGG | - | chr5_3:57890508-57890527 | Msa0820520:CDS | 35.0% |
| CTTCCTTCCTTTACCTAATT+AGG | + | chr5_3:57890615-57890634 | None:intergenic | 35.0% | |
| TTTATTCTACCCTGTTTGTG+TGG | - | chr5_3:57890641-57890660 | Msa0820520:intron | 35.0% | |
| GGAAGTAACAGAAGTTACAA+AGG | - | chr5_3:57891080-57891099 | Msa0820520:intron | 35.0% | |
| CATAGTTATCCCAATCTTCA+TGG | - | chr5_3:57891107-57891126 | Msa0820520:intron | 35.0% | |
| GTATCATATCTAAGCATCCA+AGG | + | chr5_3:57891207-57891226 | None:intergenic | 35.0% | |
| TGGATCAATCTTGAGTAGAT+TGG | + | chr5_3:57891316-57891335 | None:intergenic | 35.0% | |
| TCAACAGGTATGCAAATTCA+AGG | - | chr5_3:57891378-57891397 | Msa0820520:intron | 35.0% | |
| GAAAACAGCAAATGTTGAAC+CGG | - | chr5_3:57891491-57891510 | Msa0820520:CDS | 35.0% | |
| AAAACAGCAAATGTTGAACC+GGG | - | chr5_3:57891492-57891511 | Msa0820520:CDS | 35.0% | |
| !!! | ACAGTAGCTATTTTTGGACT+CGG | - | chr5_3:57891519-57891538 | Msa0820520:CDS | 35.0% |
| !! | ATTTTTGGACTCGGATGTAT+TGG | - | chr5_3:57891528-57891547 | Msa0820520:CDS | 35.0% |
| AACTTCTTCGCTGAATAAAG+GGG | + | chr5_3:57892111-57892130 | None:intergenic | 35.0% | |
| CAAACTTCTTCGCTGAATAA+AGG | + | chr5_3:57892113-57892132 | None:intergenic | 35.0% | |
| CTTTATTCAGCGAAGAAGTT+TGG | - | chr5_3:57892111-57892130 | Msa0820520:intron | 35.0% | |
| CTTTGTAAATCCTGGAGAAT+TGG | - | chr5_3:57892143-57892162 | Msa0820520:intron | 35.0% | |
| !! | GATTTGTTTTCCAATTCTCC+AGG | + | chr5_3:57892156-57892175 | None:intergenic | 35.0% |
| GTTATCATAGAGATGACTGA+TGG | - | chr5_3:57892186-57892205 | Msa0820520:intron | 35.0% | |
| ! | TTGCTTTGAATGTGTTGGTA+TGG | - | chr5_3:57892221-57892240 | Msa0820520:intron | 35.0% |
| AGCATATGCTTCATGTAGAA+AGG | - | chr5_3:57892260-57892279 | Msa0820520:intron | 35.0% | |
| GATACTTTGCACCAATAACA+TGG | + | chr5_3:57892350-57892369 | None:intergenic | 35.0% | |
| AGTTGGCAGAGATTAGTAAT+CGG | + | chr5_3:57892384-57892403 | None:intergenic | 35.0% | |
| ! | CTGCATACTTGTTGAAAGAA+TGG | - | chr5_3:57892608-57892627 | Msa0820520:intron | 35.0% |
| TTGATACTCAACTTAGATCC+TGG | + | chr5_3:57892697-57892716 | None:intergenic | 35.0% | |
| !!! | AGTACTGATGTCCTTTTTCA+AGG | - | chr5_3:57892718-57892737 | Msa0820520:intron | 35.0% |
| !!! | GTACTGATGTCCTTTTTCAA+GGG | - | chr5_3:57892719-57892738 | Msa0820520:intron | 35.0% |
| TAAGAGTCTTCCCTTGAAAA+AGG | + | chr5_3:57892732-57892751 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGGAAGACTCTTA+TGG | - | chr5_3:57892732-57892751 | Msa0820520:intron | 35.0% |
| TTTCAAGGGAAGACTCTTAT+GGG | - | chr5_3:57892733-57892752 | Msa0820520:intron | 35.0% | |
| ACTCTTATGGGGTCTATATT+TGG | - | chr5_3:57892745-57892764 | Msa0820520:intron | 35.0% | |
| ! | CGTTCTTTTTAAACGCTACA+TGG | - | chr5_3:57892795-57892814 | Msa0820520:CDS | 35.0% |
| ! | TTTTAAACGCTACATGGACA+AGG | - | chr5_3:57892801-57892820 | Msa0820520:CDS | 35.0% |
| ! | TATGATCTCTTCCTCTCTTT+TGG | - | chr5_3:57892858-57892877 | Msa0820520:intron | 35.0% |
| ! | GGATGATTTTGTTACACATG+AGG | - | chr5_3:57892996-57893015 | Msa0820520:intron | 35.0% |
| ! | TGATTTTGTTACACATGAGG+TGG | - | chr5_3:57892999-57893018 | Msa0820520:intron | 35.0% |
| TGACTAAAGGAGAATGTCTT+CGG | - | chr5_3:57893055-57893074 | Msa0820520:intron | 35.0% | |
| TGCTTATTATAGTGACCGGA+AGG | + | chr5_3:57889684-57889703 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+TGG | - | chr5_3:57889780-57889799 | Msa0820520:intron | 40.0% | |
| TACAGCAGGTTTATCTTCCA+TGG | + | chr5_3:57889948-57889967 | None:intergenic | 40.0% | |
| ! | CTTTACATCTTATGGGTTGC+TGG | + | chr5_3:57889985-57890004 | None:intergenic | 40.0% |
| CAGCAACCCATAAGATGTAA+AGG | - | chr5_3:57889983-57890002 | Msa0820520:CDS | 40.0% | |
| ATACGAATCCTAGCTTCATG+TGG | + | chr5_3:57890286-57890305 | None:intergenic | 40.0% | |
| GATATCACTGTGACAAAGAG+AGG | + | chr5_3:57890317-57890336 | None:intergenic | 40.0% | |
| ATCCTTGGAAAAATTGCAGG+AGG | + | chr5_3:57890505-57890524 | None:intergenic | 40.0% | |
| AGTGTATGACCACACAAACA+GGG | + | chr5_3:57890653-57890672 | None:intergenic | 40.0% | |
| CTCACATTGCCAAAGTTCTT+AGG | - | chr5_3:57890776-57890795 | Msa0820520:intron | 40.0% | |
| CTTTGCAGACCTAAGAACTT+TGG | + | chr5_3:57890788-57890807 | None:intergenic | 40.0% | |
| CTTCGCTCACTCTCAAAAAT+TGG | + | chr5_3:57890926-57890945 | None:intergenic | 40.0% | |
| ! | TTTTATGTGATCCAGGGTTG+TGG | - | chr5_3:57891044-57891063 | Msa0820520:intron | 40.0% |
| CACAATCAGCCATGAAGATT+GGG | + | chr5_3:57891119-57891138 | None:intergenic | 40.0% | |
| TCACAATCAGCCATGAAGAT+TGG | + | chr5_3:57891120-57891139 | None:intergenic | 40.0% | |
| AAACAGCAAATGTTGAACCG+GGG | - | chr5_3:57891493-57891512 | Msa0820520:CDS | 40.0% | |
| ! | ACTCGGATGTATTGGATTAG+CGG | - | chr5_3:57891536-57891555 | Msa0820520:CDS | 40.0% |
| !! | GATGTATTGGATTAGCGGTA+TGG | - | chr5_3:57891541-57891560 | Msa0820520:CDS | 40.0% |
| ! | TTTTGTAGTTTGGGCCTGTT+TGG | - | chr5_3:57891587-57891606 | Msa0820520:CDS | 40.0% |
| TCAAATAAGTCGGTCCAAAC+AGG | + | chr5_3:57891604-57891623 | None:intergenic | 40.0% | |
| TGTGGAGCAACTAGGATTAT+AGG | - | chr5_3:57891936-57891955 | Msa0820520:intron | 40.0% | |
| AGCAACTAGGATTATAGGTG+TGG | - | chr5_3:57891941-57891960 | Msa0820520:intron | 40.0% | |
| GTCACAGACTTTGTAAATCC+TGG | - | chr5_3:57892135-57892154 | Msa0820520:intron | 40.0% | |
| GGAAAACAAATCTGTGAGTC+AGG | - | chr5_3:57892164-57892183 | Msa0820520:intron | 40.0% | |
| ATCATAGAGATGACTGATGG+AGG | - | chr5_3:57892189-57892208 | Msa0820520:intron | 40.0% | |
| ! | ATGTGTTGGTATGGCATCAT+TGG | - | chr5_3:57892230-57892249 | Msa0820520:CDS | 40.0% |
| TGGAAGGATAGACTCCATAA+GGG | + | chr5_3:57892428-57892447 | None:intergenic | 40.0% | |
| TTGGAAGGATAGACTCCATA+AGG | + | chr5_3:57892429-57892448 | None:intergenic | 40.0% | |
| !!! | TGGTGTTTTGATTTCAGGGT+TGG | - | chr5_3:57892641-57892660 | Msa0820520:intron | 40.0% |
| !!! | GGTGTTTTGATTTCAGGGTT+GGG | - | chr5_3:57892642-57892661 | Msa0820520:intron | 40.0% |
| !!! | GTGTTTTGATTTCAGGGTTG+GGG | - | chr5_3:57892643-57892662 | Msa0820520:intron | 40.0% |
| TTCAAGGGAAGACTCTTATG+GGG | - | chr5_3:57892734-57892753 | Msa0820520:intron | 40.0% | |
| CTTATGGGGTCTATATTTGG+AGG | - | chr5_3:57892748-57892767 | Msa0820520:intron | 40.0% | |
| ! | AATGTCTTCGGTGTGTGATT+TGG | - | chr5_3:57893067-57893086 | Msa0820520:intron | 40.0% |
| TCAATAATCAGTGGCTCACC+TGG | + | chr5_3:57890238-57890257 | None:intergenic | 45.0% | |
| ! | AGGTGAGCCACTGATTATTG+AGG | - | chr5_3:57890237-57890256 | Msa0820520:intron | 45.0% |
| ATCCTAGCTTCATGTGGCAT+TGG | + | chr5_3:57890280-57890299 | None:intergenic | 45.0% | |
| ! | AGCCTCCTGCAATTTTTCCA+AGG | - | chr5_3:57890500-57890519 | Msa0820520:CDS | 45.0% |
| ATACTGGGTCATGAGGCAAT+TGG | - | chr5_3:57890523-57890542 | Msa0820520:CDS | 45.0% | |
| TACTGGGTCATGAGGCAATT+GGG | - | chr5_3:57890524-57890543 | Msa0820520:CDS | 45.0% | |
| GAGTGTATGACCACACAAAC+AGG | + | chr5_3:57890654-57890673 | None:intergenic | 45.0% | |
| TTGTTAACTACGTGCATGCG+TGG | + | chr5_3:57890676-57890695 | None:intergenic | 45.0% | |
| ATCCAACAATTCCTCCCAAC+AGG | - | chr5_3:57891331-57891350 | Msa0820520:intron | 45.0% | |
| TCCAACAATTCCTCCCAACA+GGG | - | chr5_3:57891332-57891351 | Msa0820520:intron | 45.0% | |
| TTGATACACCACAACTGAGG+AGG | + | chr5_3:57891362-57891381 | None:intergenic | 45.0% | |
| CTGTTGATACACCACAACTG+AGG | + | chr5_3:57891365-57891384 | None:intergenic | 45.0% | |
| CTCAGTTGTGGTGTATCAAC+AGG | - | chr5_3:57891363-57891382 | Msa0820520:intron | 45.0% | |
| AAAATAGCTACTGTCGACCC+CGG | + | chr5_3:57891513-57891532 | None:intergenic | 45.0% | |
| !! | GGGTCGACAGTAGCTATTTT+TGG | - | chr5_3:57891513-57891532 | Msa0820520:CDS | 45.0% |
| ATTGTTTCCTAGGTGGCTGA+AGG | - | chr5_3:57891903-57891922 | Msa0820520:intron | 45.0% | |
| CTAGACTTTGTGGAGCAACT+AGG | - | chr5_3:57891928-57891947 | Msa0820520:intron | 45.0% | |
| TTCTTCGCTGAATAAAGGGG+AGG | + | chr5_3:57892108-57892127 | None:intergenic | 45.0% | |
| CTAATCTCTGCCAACTGTCA+TGG | - | chr5_3:57892388-57892407 | Msa0820520:intron | 45.0% | |
| CAACTAGACACCATGACAGT+TGG | + | chr5_3:57892401-57892420 | None:intergenic | 45.0% | |
| CAACTGTCATGGTGTCTAGT+TGG | - | chr5_3:57892399-57892418 | Msa0820520:intron | 45.0% | |
| AAGGATAGACTCCATAAGGG+TGG | + | chr5_3:57892425-57892444 | None:intergenic | 45.0% | |
| GATCTCTCAAGCAAGGTTTC+GGG | + | chr5_3:57892482-57892501 | None:intergenic | 45.0% | |
| GGATCTCTCAAGCAAGGTTT+CGG | + | chr5_3:57892483-57892502 | None:intergenic | 45.0% | |
| CAAAGTTGCATTAGTCCGAG+TGG | + | chr5_3:57892516-57892535 | None:intergenic | 45.0% | |
| CACTCGGACTAATGCAACTT+TGG | - | chr5_3:57892514-57892533 | Msa0820520:CDS | 45.0% | |
| AGAACGGGTACATCAGACTT+GGG | + | chr5_3:57892781-57892800 | None:intergenic | 45.0% | |
| AAGAACGGGTACATCAGACT+TGG | + | chr5_3:57892782-57892801 | None:intergenic | 45.0% | |
| ! | TCTTCGGTGTGTGATTTGGA+TGG | - | chr5_3:57893071-57893090 | Msa0820520:intron | 45.0% |
| !!! | AATTTTTTAACTTTTTTTTT+TGG | - | chr5_3:57890730-57890749 | Msa0820520:intron | 5.0% |
| CCATGGCGATGATGAGTCAA+GGG | + | chr5_3:57889931-57889950 | None:intergenic | 50.0% | |
| TCCATGGCGATGATGAGTCA+AGG | + | chr5_3:57889932-57889951 | None:intergenic | 50.0% | |
| ! | CCTTCACTTGTTGCTACAGC+AGG | + | chr5_3:57889962-57889981 | None:intergenic | 50.0% |
| CCTGCTGTAGCAACAAGTGA+AGG | - | chr5_3:57889959-57889978 | Msa0820520:CDS | 50.0% | |
| ! | CTAGCTTCATGTGGCATTGG+TGG | + | chr5_3:57890277-57890296 | None:intergenic | 50.0% |
| CACCAATGCCACATGAAGCT+AGG | - | chr5_3:57890275-57890294 | Msa0820520:intron | 50.0% | |
| TCCAAGGATACTGGGTCATG+AGG | - | chr5_3:57890516-57890535 | Msa0820520:CDS | 50.0% | |
| ! | TCCAGGGTTGTGGAAAGTGT+TGG | - | chr5_3:57891054-57891073 | Msa0820520:intron | 50.0% |
| TCCAACACTTTCCACAACCC+TGG | + | chr5_3:57891058-57891077 | None:intergenic | 50.0% | |
| !! | GGTTGTGGAAAGTGTTGGAG+AGG | - | chr5_3:57891059-57891078 | Msa0820520:intron | 50.0% |
| !! | TTTTAGGGGTAGGTGCTGCA+TGG | - | chr5_3:57891469-57891488 | Msa0820520:CDS | 50.0% |
| GCTGAAGGAGCTAGACTTTG+TGG | - | chr5_3:57891918-57891937 | Msa0820520:intron | 50.0% | |
| TGTCTAGTTGGCCACCCTTA+TGG | - | chr5_3:57892411-57892430 | Msa0820520:intron | 50.0% | |
| TGCATTAGTCCGAGTGGAAC+TGG | + | chr5_3:57892510-57892529 | None:intergenic | 50.0% | |
| ATGTTAGGAGTGGACAAGCC+AGG | - | chr5_3:57892676-57892695 | Msa0820520:intron | 50.0% | |
| !! | AGTCAAGGGAGGGTACTGGA+AGG | + | chr5_3:57889917-57889936 | None:intergenic | 55.0% |
| ! | GATGAGTCAAGGGAGGGTAC+TGG | + | chr5_3:57889921-57889940 | None:intergenic | 55.0% |
| GGCGATGATGAGTCAAGGGA+GGG | + | chr5_3:57889927-57889946 | None:intergenic | 55.0% | |
| TGGCGATGATGAGTCAAGGG+AGG | + | chr5_3:57889928-57889947 | None:intergenic | 55.0% | |
| CCCTTGACTCATCATCGCCA+TGG | - | chr5_3:57889928-57889947 | Msa0820520:intron | 55.0% | |
| GCCTCATGACCCAGTATCCT+TGG | + | chr5_3:57890520-57890539 | None:intergenic | 55.0% | |
| GCCCTGTTGGGAGGAATTGT+TGG | + | chr5_3:57891336-57891355 | None:intergenic | 55.0% | |
| ! | TCTAGCTCCTTCAGCCACCT+AGG | + | chr5_3:57891913-57891932 | None:intergenic | 55.0% |
| ! | GGTTTCGGGTCCAAGCATTG+TGG | + | chr5_3:57892468-57892487 | None:intergenic | 55.0% |
| GGACTCGGATCTCTCAAGCA+AGG | + | chr5_3:57892489-57892508 | None:intergenic | 55.0% | |
| GATCCGAGTCCAGTTCCACT+CGG | - | chr5_3:57892498-57892517 | Msa0820520:CDS | 55.0% | |
| AGTCCGAGTGGAACTGGACT+CGG | + | chr5_3:57892504-57892523 | None:intergenic | 55.0% | |
| GCTGCGGTTTGTCGCAAACC+AGG | - | chr5_3:57890217-57890236 | Msa0820520:intron | 60.0% | |
| ! | CTGAGGAGGCATGCCCTGTT+GGG | + | chr5_3:57891348-57891367 | None:intergenic | 60.0% |
| ! | ACTGAGGAGGCATGCCCTGT+TGG | + | chr5_3:57891349-57891368 | None:intergenic | 60.0% |
| AGGGCATGCCTCCTCAGTTG+TGG | - | chr5_3:57891351-57891370 | Msa0820520:intron | 60.0% | |
| ! | AGGAGGCATGCCCTGTTGGG+AGG | + | chr5_3:57891345-57891364 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 57889564 | 57893207 | 57889564 | ID=Msa0820520;Name=Msa0820520 |
| chr5_3 | mRNA | 57889564 | 57893207 | 57889564 | ID=Msa0820520-mRNA-1;Parent=Msa0820520;Name=Msa0820520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=99|1|1|1|0.88|0.8|10|106|389 |
| chr5_3 | exon | 57889564 | 57889786 | 57889564 | ID=Msa0820520-mRNA-1:exon:17567;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57889949 | 57890113 | 57889949 | ID=Msa0820520-mRNA-1:exon:17566;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57890490 | 57890650 | 57890490 | ID=Msa0820520-mRNA-1:exon:17565;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57890781 | 57890856 | 57890781 | ID=Msa0820520-mRNA-1:exon:17564;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57891214 | 57891296 | 57891214 | ID=Msa0820520-mRNA-1:exon:17563;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57891387 | 57891712 | 57891387 | ID=Msa0820520-mRNA-1:exon:17562;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57892226 | 57892272 | 57892226 | ID=Msa0820520-mRNA-1:exon:17561;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57892417 | 57892553 | 57892417 | ID=Msa0820520-mRNA-1:exon:17560;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57892767 | 57892849 | 57892767 | ID=Msa0820520-mRNA-1:exon:17559;Parent=Msa0820520-mRNA-1 |
| chr5_3 | exon | 57893134 | 57893207 | 57893134 | ID=Msa0820520-mRNA-1:exon:17558;Parent=Msa0820520-mRNA-1 |
| chr5_3 | five_prime_UTR | 57893134 | 57893207 | 57893134 | ID=Msa0820520-mRNA-1:five_prime_utr;Parent=Msa0820520-mRNA-1 |
| chr5_3 | five_prime_UTR | 57892825 | 57892849 | 57892825 | ID=Msa0820520-mRNA-1:five_prime_utr;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57892767 | 57892824 | 57892767 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57892417 | 57892553 | 57892417 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57892226 | 57892272 | 57892226 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57891387 | 57891712 | 57891387 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57891214 | 57891296 | 57891214 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57890781 | 57890856 | 57890781 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57890490 | 57890650 | 57890490 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57889949 | 57890113 | 57889949 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | CDS | 57889670 | 57889786 | 57889670 | ID=Msa0820520-mRNA-1:cds;Parent=Msa0820520-mRNA-1 |
| chr5_3 | three_prime_UTR | 57889564 | 57889669 | 57889564 | ID=Msa0820520-mRNA-1:three_prime_utr;Parent=Msa0820520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
