Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154220 | AES59968.1 | 92.268 | 194 | 14 | 1 | 1 | 194 | 267 | 459 | 3.05e-125 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154220 | sp|Q9FMX6|DJC76_ARATH | 33.990 | 203 | 117 | 5 | 1 | 192 | 263 | 459 | 2.36e-23 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154220 | G7IBD4 | 92.268 | 194 | 14 | 1 | 1 | 194 | 267 | 459 | 1.46e-125 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0154220 | 0.828646 | 8.006689e-55 | -8.615850e-47 |
| Msa0014410 | Msa0154220 | 0.889631 | 2.036953e-73 | -8.615850e-47 |
| Msa0044180 | Msa0154220 | 0.844333 | 8.068916e-59 | -8.615850e-47 |
| Msa0063760 | Msa0154220 | 0.806474 | 8.085057e-50 | -8.615850e-47 |
| Msa0064550 | Msa0154220 | 0.868951 | 4.456177e-66 | -8.615850e-47 |
| Msa0072830 | Msa0154220 | 0.808597 | 2.863715e-50 | -8.615850e-47 |
| Msa0072860 | Msa0154220 | 0.807052 | 6.101378e-50 | -8.615850e-47 |
| Msa0090860 | Msa0154220 | 0.836649 | 8.267906e-57 | -8.615850e-47 |
| Msa0101170 | Msa0154220 | -0.809073 | 2.265422e-50 | -8.615850e-47 |
| Msa0108070 | Msa0154220 | 0.837683 | 4.497341e-57 | -8.615850e-47 |
| Msa0109490 | Msa0154220 | 0.837349 | 5.478281e-57 | -8.615850e-47 |
| Msa0140290 | Msa0154220 | 0.824936 | 6.161906e-54 | -8.615850e-47 |
| Msa0154180 | Msa0154220 | 0.870346 | 1.564298e-66 | -8.615850e-47 |
| Msa0154200 | Msa0154220 | 0.896558 | 3.287213e-76 | -8.615850e-47 |
| Msa0154220 | Msa0154240 | 0.874794 | 5.110439e-68 | -8.615850e-47 |
| Msa0154220 | Msa0154270 | 0.922076 | 1.572446e-88 | -8.615850e-47 |
| Msa0154220 | Msa0155610 | 0.859212 | 4.835371e-63 | -8.615850e-47 |
| Msa0154220 | Msa0171920 | 0.811627 | 6.369559e-51 | -8.615850e-47 |
| Msa0154220 | Msa0183560 | 0.835508 | 1.610921e-56 | -8.615850e-47 |
| Msa0154220 | Msa0187980 | 0.805846 | 1.096207e-49 | -8.615850e-47 |
| Msa0154220 | Msa0197030 | 0.851148 | 1.072017e-60 | -8.615850e-47 |
| Msa0154220 | Msa0202740 | 0.812367 | 4.392625e-51 | -8.615850e-47 |
| Msa0154220 | Msa0212730 | 0.842373 | 2.690280e-58 | -8.615850e-47 |
| Msa0154220 | Msa0216210 | 0.817729 | 2.835551e-52 | -8.615850e-47 |
| Msa0154220 | Msa0224370 | 0.816190 | 6.281802e-52 | -8.615850e-47 |
| Msa0154220 | Msa0224400 | 0.825066 | 5.741447e-54 | -8.615850e-47 |
| Msa0154220 | Msa0225880 | 0.824166 | 9.352752e-54 | -8.615850e-47 |
| Msa0154220 | Msa0238860 | 0.837655 | 4.571820e-57 | -8.615850e-47 |
| Msa0154220 | Msa0253160 | 0.865047 | 7.836901e-65 | -8.615850e-47 |
| Msa0154220 | Msa0260190 | 0.838227 | 3.258449e-57 | -8.615850e-47 |
| Msa0154220 | Msa0260470 | 0.819983 | 8.717594e-53 | -8.615850e-47 |
| Msa0154220 | Msa0265580 | 0.835555 | 1.567499e-56 | -8.615850e-47 |
| Msa0154220 | Msa0276590 | 0.845426 | 4.091375e-59 | -8.615850e-47 |
| Msa0154220 | Msa0291940 | 0.864065 | 1.589066e-64 | -8.615850e-47 |
| Msa0154220 | Msa0295570 | 0.825416 | 4.743675e-54 | -8.615850e-47 |
| Msa0154220 | Msa0303440 | 0.850173 | 2.015044e-60 | -8.615850e-47 |
| Msa0154220 | Msa0303500 | 0.849139 | 3.917406e-60 | -8.615850e-47 |
| Msa0154220 | Msa0304110 | 0.833959 | 3.951458e-56 | -8.615850e-47 |
| Msa0154220 | Msa0316610 | 0.828783 | 7.421121e-55 | -8.615850e-47 |
| Msa0154220 | Msa0341190 | 0.827711 | 1.345368e-54 | -8.615850e-47 |
| Msa0154220 | Msa0344680 | 0.887258 | 1.671129e-72 | -8.615850e-47 |
| Msa0154220 | Msa0346790 | 0.804557 | 2.039853e-49 | -8.615850e-47 |
| Msa0154220 | Msa0354390 | 0.834057 | 3.734372e-56 | -8.615850e-47 |
| Msa0154220 | Msa0358290 | 0.851790 | 7.053755e-61 | -8.615850e-47 |
| Msa0154220 | Msa0377280 | 0.806867 | 6.676706e-50 | -8.615850e-47 |
| Msa0154220 | Msa0380650 | 0.800283 | 1.549538e-48 | -8.615850e-47 |
| Msa0154220 | Msa0382590 | 0.851025 | 1.161023e-60 | -8.615850e-47 |
| Msa0154220 | Msa0387970 | 0.830208 | 3.342313e-55 | -8.615850e-47 |
| Msa0154220 | Msa0392050 | 0.887221 | 1.725558e-72 | -8.615850e-47 |
| Msa0154220 | Msa0392540 | 0.840264 | 9.653162e-58 | -8.615850e-47 |
| Msa0154220 | Msa0401340 | 0.857466 | 1.600900e-62 | -8.615850e-47 |
| Msa0154220 | Msa0404070 | 0.815199 | 1.044671e-51 | -8.615850e-47 |
| Msa0154220 | Msa0404690 | 0.805087 | 1.581143e-49 | -8.615850e-47 |
| Msa0154220 | Msa0412190 | 0.811917 | 5.507093e-51 | -8.615850e-47 |
| Msa0154220 | Msa0432720 | 0.852542 | 4.311647e-61 | -8.615850e-47 |
| Msa0154220 | Msa0435010 | 0.801003 | 1.105098e-48 | -8.615850e-47 |
| Msa0154220 | Msa0437550 | 0.831869 | 1.307183e-55 | -8.615850e-47 |
| Msa0154220 | Msa0440310 | 0.823050 | 1.706489e-53 | -8.615850e-47 |
| Msa0154220 | Msa0448120 | 0.852603 | 4.143478e-61 | -8.615850e-47 |
| Msa0154220 | Msa0463150 | 0.803419 | 3.517773e-49 | -8.615850e-47 |
| Msa0154220 | Msa0465800 | 0.803699 | 3.078101e-49 | -8.615850e-47 |
| Msa0154220 | Msa0469950 | 0.887117 | 1.891334e-72 | -8.615850e-47 |
| Msa0154220 | Msa0472740 | 0.807164 | 5.778660e-50 | -8.615850e-47 |
| Msa0154220 | Msa0479100 | 0.805804 | 1.118745e-49 | -8.615850e-47 |
| Msa0154220 | Msa0481490 | 0.828343 | 9.476530e-55 | -8.615850e-47 |
| Msa0154220 | Msa0487490 | 0.818644 | 1.760528e-52 | -8.615850e-47 |
| Msa0154220 | Msa0525270 | 0.877204 | 7.580167e-69 | -8.615850e-47 |
| Msa0154220 | Msa0525280 | 0.875840 | 2.243818e-68 | -8.615850e-47 |
| Msa0154220 | Msa0530340 | 0.826825 | 2.193380e-54 | -8.615850e-47 |
| Msa0154220 | Msa0530950 | 0.802630 | 5.120881e-49 | -8.615850e-47 |
| Msa0154220 | Msa0545230 | 0.826199 | 3.092411e-54 | -8.615850e-47 |
| Msa0154220 | Msa0546080 | 0.847921 | 8.513472e-60 | -8.615850e-47 |
| Msa0154220 | Msa0548210 | 0.841259 | 5.295733e-58 | -8.615850e-47 |
| Msa0154220 | Msa0549540 | 0.872539 | 2.943744e-67 | -8.615850e-47 |
| Msa0154220 | Msa0549760 | 0.872254 | 3.661892e-67 | -8.615850e-47 |
| Msa0154220 | Msa0556070 | 0.828634 | 8.063826e-55 | -8.615850e-47 |
| Msa0154220 | Msa0570680 | 0.816128 | 6.488729e-52 | -8.615850e-47 |
| Msa0154220 | Msa0583740 | 0.807000 | 6.258555e-50 | -8.615850e-47 |
| Msa0154220 | Msa0584280 | 0.842441 | 2.580690e-58 | -8.615850e-47 |
| Msa0154220 | Msa0600820 | 0.810786 | 9.695359e-51 | -8.615850e-47 |
| Msa0154220 | Msa0604880 | 0.856261 | 3.625287e-62 | -8.615850e-47 |
| Msa0154220 | Msa0605250 | 0.857611 | 1.450514e-62 | -8.615850e-47 |
| Msa0154220 | Msa0609790 | 0.839650 | 1.395957e-57 | -8.615850e-47 |
| Msa0154220 | Msa0610780 | 0.813002 | 3.189964e-51 | -8.615850e-47 |
| Msa0154220 | Msa0622250 | 0.850126 | 2.077596e-60 | -8.615850e-47 |
| Msa0154220 | Msa0624040 | 0.811854 | 5.685842e-51 | -8.615850e-47 |
| Msa0154220 | Msa0627050 | 0.866841 | 2.122972e-65 | -8.615850e-47 |
| Msa0154220 | Msa0636720 | 0.836130 | 1.120366e-56 | -8.615850e-47 |
| Msa0154220 | Msa0644630 | 0.826600 | 2.481533e-54 | -8.615850e-47 |
| Msa0154220 | Msa0646190 | 0.888728 | 4.562951e-73 | -8.615850e-47 |
| Msa0154220 | Msa0646340 | 0.806959 | 6.383514e-50 | -8.615850e-47 |
| Msa0154220 | Msa0649310 | 0.807495 | 4.916481e-50 | -8.615850e-47 |
| Msa0154220 | Msa0651310 | 0.836633 | 8.348041e-57 | -8.615850e-47 |
| Msa0154220 | Msa0659300 | -0.824048 | 9.967883e-54 | -8.615850e-47 |
| Msa0154220 | Msa0659520 | 0.801471 | 8.863179e-49 | -8.615850e-47 |
| Msa0154220 | Msa0665790 | 0.817268 | 3.600663e-52 | -8.615850e-47 |
| Msa0154220 | Msa0676100 | 0.815920 | 7.220720e-52 | -8.615850e-47 |
| Msa0154220 | Msa0679780 | 0.821394 | 4.133105e-53 | -8.615850e-47 |
| Msa0154220 | Msa0681210 | 0.856311 | 3.506431e-62 | -8.615850e-47 |
| Msa0154220 | Msa0685890 | 0.838473 | 2.816866e-57 | -8.615850e-47 |
| Msa0154220 | Msa0693400 | 0.822832 | 1.918202e-53 | -8.615850e-47 |
| Msa0154220 | Msa0693500 | 0.813695 | 2.247721e-51 | -8.615850e-47 |
| Msa0154220 | Msa0705810 | 0.823222 | 1.555683e-53 | -8.615850e-47 |
| Msa0154220 | Msa0713210 | 0.812612 | 3.883149e-51 | -8.615850e-47 |
| Msa0154220 | Msa0715510 | -0.806806 | 6.877349e-50 | -8.615850e-47 |
| Msa0154220 | Msa0740210 | 0.844877 | 5.756740e-59 | -8.615850e-47 |
| Msa0154220 | Msa0748330 | 0.844653 | 6.617422e-59 | -8.615850e-47 |
| Msa0154220 | Msa0781390 | 0.859839 | 3.133033e-63 | -8.615850e-47 |
| Msa0154220 | Msa0790640 | 0.869343 | 3.324772e-66 | -8.615850e-47 |
| Msa0154220 | Msa0793100 | 0.809557 | 1.783730e-50 | -8.615850e-47 |
| Msa0154220 | Msa0806720 | 0.844043 | 9.652392e-59 | -8.615850e-47 |
| Msa0154220 | Msa0806760 | 0.838183 | 3.345883e-57 | -8.615850e-47 |
| Msa0154220 | Msa0820520 | 0.805296 | 1.429711e-49 | -8.615850e-47 |
| Msa0154220 | Msa0860920 | 0.843346 | 1.482334e-58 | -8.615850e-47 |
| Msa0154220 | Msa0899730 | 0.811490 | 6.820850e-51 | -8.615850e-47 |
| Msa0154220 | Msa0928970 | 0.800377 | 1.482709e-48 | -8.615850e-47 |
| Msa0154220 | Msa0944690 | 0.822201 | 2.688247e-53 | -8.615850e-47 |
| Msa0154220 | Msa0945960 | 0.833443 | 5.316701e-56 | -8.615850e-47 |
| Msa0154220 | Msa0964650 | 0.801188 | 1.013224e-48 | -8.615850e-47 |
| Msa0154220 | Msa0968780 | 0.827135 | 1.849472e-54 | -8.615850e-47 |
| Msa0154220 | Msa0973890 | 0.809291 | 2.034691e-50 | -8.615850e-47 |
| Msa0154220 | Msa0984000 | 0.900784 | 5.176663e-78 | -8.615850e-47 |
| Msa0154220 | Msa1034930 | 0.800003 | 1.766826e-48 | -8.615850e-47 |
| Msa0154220 | Msa1036250 | 0.831760 | 1.390692e-55 | -8.615850e-47 |
| Msa0154220 | Msa1076520 | 0.834016 | 3.823261e-56 | -8.615850e-47 |
| Msa0154220 | Msa1079480 | 0.812951 | 3.274158e-51 | -8.615850e-47 |
| Msa0154220 | Msa1082150 | 0.833649 | 4.725111e-56 | -8.615850e-47 |
| Msa0154220 | Msa1137940 | 0.836551 | 8.759038e-57 | -8.615850e-47 |
| Msa0154220 | Msa1144730 | 0.887549 | 1.294279e-72 | -8.615850e-47 |
| Msa0154220 | Msa1158090 | 0.826895 | 2.110431e-54 | -8.615850e-47 |
| Msa0154220 | Msa1173380 | 0.831453 | 1.655579e-55 | -8.615850e-47 |
| Msa0154220 | Msa1177240 | 0.809753 | 1.619367e-50 | -8.615850e-47 |
| Msa0154220 | Msa1180050 | 0.836221 | 1.062789e-56 | -8.615850e-47 |
| Msa0154220 | Msa1182800 | 0.818429 | 1.969865e-52 | -8.615850e-47 |
| Msa0154220 | Msa1182830 | 0.808629 | 2.820142e-50 | -8.615850e-47 |
| Msa0154220 | Msa1184010 | 0.815136 | 1.078886e-51 | -8.615850e-47 |
| Msa0154220 | Msa1211390 | 0.804362 | 2.240537e-49 | -8.615850e-47 |
| Msa0154220 | Msa1228350 | 0.812771 | 3.584532e-51 | -8.615850e-47 |
| Msa0154220 | Msa1232270 | 0.853501 | 2.292202e-61 | -8.615850e-47 |
| Msa0154220 | Msa1248220 | 0.814963 | 1.178641e-51 | -8.615850e-47 |
| Msa0154220 | Msa1255020 | 0.828249 | 9.985313e-55 | -8.615850e-47 |
| Msa0154220 | Msa1270770 | 0.833538 | 5.035090e-56 | -8.615850e-47 |
| Msa0154220 | Msa1272950 | 0.805937 | 1.048970e-49 | -8.615850e-47 |
| Msa0154220 | Msa1281270 | 0.823528 | 1.319833e-53 | -8.615850e-47 |
| Msa0154220 | Msa1292960 | 0.801088 | 1.061672e-48 | -8.615850e-47 |
| Msa0154220 | Msa1293050 | 0.803387 | 3.572121e-49 | -8.615850e-47 |
| Msa0154220 | Msa1295470 | 0.821403 | 4.112812e-53 | -8.615850e-47 |
| Msa0154220 | Msa1306190 | 0.827705 | 1.349852e-54 | -8.615850e-47 |
| Msa0154220 | Msa1306200 | 0.822544 | 2.238167e-53 | -8.615850e-47 |
| Msa0154220 | Msa1317030 | 0.804295 | 2.313816e-49 | -8.615850e-47 |
| Msa0154220 | Msa1320380 | 0.830267 | 3.233141e-55 | -8.615850e-47 |
| Msa0154220 | Msa1326400 | 0.812671 | 3.770451e-51 | -8.615850e-47 |
| Msa0154220 | Msa1349810 | 0.881317 | 2.653413e-70 | -8.615850e-47 |
| Msa0154220 | Msa1354090 | 0.853791 | 1.891590e-61 | -8.615850e-47 |
| Msa0154220 | Msa1358340 | 0.858381 | 8.564432e-63 | -8.615850e-47 |
| Msa0154220 | Msa1359890 | 0.889440 | 2.416829e-73 | -8.615850e-47 |
| Msa0154220 | Msa1369180 | 0.813789 | 2.142250e-51 | -8.615850e-47 |
| Msa0154220 | Msa1375780 | 0.813651 | 2.297385e-51 | -8.615850e-47 |
| Msa0154220 | Msa1378470 | 0.821318 | 4.302338e-53 | -8.615850e-47 |
| Msa0154220 | Msa1394900 | 0.851245 | 1.006271e-60 | -8.615850e-47 |
| Msa0154220 | Msa1405380 | 0.801148 | 1.032332e-48 | -8.615850e-47 |
| Msa0154220 | Msa1406020 | 0.826879 | 2.129347e-54 | -8.615850e-47 |
| Msa0154220 | Msa1434660 | 0.843609 | 1.261213e-58 | -8.615850e-47 |
| Msa0154220 | Msa1459540 | 0.842229 | 2.937636e-58 | -8.615850e-47 |
| Msa0154220 | Msa1466350 | 0.844117 | 9.220080e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154220 | MtrunA17_Chr1g0164721 | 92.268 | 194 | 14 | 1 | 1 | 194 | 285 | 477 | 4.18e-129 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0154220 | AT5G23240.1 | 33.990 | 203 | 117 | 5 | 1 | 192 | 263 | 459 | 2.40e-24 | 99.4 |
Find 42 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGGATGAATGGAATTTA+TGG | 0.158588 | 1_4:+18619059 | None:intergenic |
| CAATTTCTAATTGGTTATAT+TGG | 0.226095 | 1_4:-18619221 | Msa0154220:CDS |
| CTCTTTGCAGCTGCATCTCT+TGG | 0.264299 | 1_4:+18619120 | None:intergenic |
| TCTCTTGGCTTACTAAGATT+TGG | 0.268758 | 1_4:+18619135 | None:intergenic |
| CCATTCATCCTGAGGAATAT+TGG | 0.276497 | 1_4:-18619050 | Msa0154220:CDS |
| ACTGGCAATCCCCATCTAAT+TGG | 0.277395 | 1_4:+18618892 | None:intergenic |
| CAATTAGATCAATTTCTAAT+TGG | 0.293169 | 1_4:-18619230 | Msa0154220:CDS |
| CCAGTGGTTACTTCATTGTT+TGG | 0.318448 | 1_4:-18618874 | Msa0154220:CDS |
| TTGGTGCGAATTGCACTATT+TGG | 0.322832 | 1_4:+18619195 | None:intergenic |
| ATGAAAATAGTCCAATTAGA+TGG | 0.341134 | 1_4:-18618903 | Msa0154220:CDS |
| TTGGGGAGGTTCTCTAGCTT+TGG | 0.348620 | 1_4:-18618794 | Msa0154220:CDS |
| TGGAAATTGTTAACAGCTCT+TGG | 0.372667 | 1_4:-18618774 | Msa0154220:CDS |
| TCAGGATGAATGGAATTTAT+GGG | 0.397759 | 1_4:+18619060 | None:intergenic |
| GAAGGAAGAACAGTAGTTGA+TGG | 0.402925 | 1_4:+18619024 | None:intergenic |
| AGTTGAGTTGAAAGAGCATT+GGG | 0.412413 | 1_4:-18618812 | Msa0154220:CDS |
| TCGATTTCTATTTCCAATGT+TGG | 0.441877 | 1_4:+18618687 | None:intergenic |
| GGTTACTTCATTGTTTGGTA+TGG | 0.442830 | 1_4:-18618869 | Msa0154220:CDS |
| CCAATATTCCTCAGGATGAA+TGG | 0.445444 | 1_4:+18619050 | None:intergenic |
| TGAAAATAGTCCAATTAGAT+GGG | 0.463058 | 1_4:-18618902 | Msa0154220:CDS |
| GAAAATGTAGGCTTCTCAAT+TGG | 0.464770 | 1_4:+18618973 | None:intergenic |
| GCAGCTACATGGTATGTGAT+TGG | 0.477504 | 1_4:-18618733 | Msa0154220:CDS |
| AAGGGTTGCTGTAGAATTTG+TGG | 0.483426 | 1_4:-18618710 | Msa0154220:CDS |
| GGCTTACTAAGATTTGGATC+AGG | 0.486859 | 1_4:+18619141 | None:intergenic |
| TGTTTGGTATGGCTGCAGTT+AGG | 0.496837 | 1_4:-18618858 | Msa0154220:CDS |
| CAGTTGAGTTGAAAGAGCAT+TGG | 0.510120 | 1_4:-18618813 | Msa0154220:CDS |
| GTAGTAGTACTAGTTGAAGA+AGG | 0.518499 | 1_4:+18619006 | None:intergenic |
| CTCTTGGTTGCAATATATGT+TGG | 0.521916 | 1_4:-18618758 | Msa0154220:CDS |
| TTCTTCCCTTGAGAAAATGT+AGG | 0.528643 | 1_4:+18618961 | None:intergenic |
| GATGGAGTCCAATATTCCTC+AGG | 0.534720 | 1_4:+18619042 | None:intergenic |
| CTACATGGTATGTGATTGGA+AGG | 0.538431 | 1_4:-18618729 | Msa0154220:CDS |
| GTAGAATTTGTGGCCAACAT+TGG | 0.550242 | 1_4:-18618700 | Msa0154220:CDS |
| CAGGATGAATGGAATTTATG+GGG | 0.557366 | 1_4:+18619061 | None:intergenic |
| ATATGTTGGTAGCAGCTACA+TGG | 0.578806 | 1_4:-18618744 | Msa0154220:CDS |
| GCAGTTAGGTTACATGAAGT+AGG | 0.596129 | 1_4:-18618844 | Msa0154220:CDS |
| AATTAGATGGGGATTGCCAG+TGG | 0.600248 | 1_4:-18618890 | Msa0154220:CDS |
| CATAAATTCCATTCATCCTG+AGG | 0.607786 | 1_4:-18619058 | Msa0154220:CDS |
| CCAAACAATGAAGTAACCAC+TGG | 0.612811 | 1_4:+18618874 | None:intergenic |
| AGGATGAATGGAATTTATGG+GGG | 0.638502 | 1_4:+18619062 | None:intergenic |
| GAGTTGAAAGAGCATTGGGG+AGG | 0.639356 | 1_4:-18618808 | Msa0154220:CDS |
| GAAAATAGTCCAATTAGATG+GGG | 0.640775 | 1_4:-18618901 | Msa0154220:CDS |
| GTTGAGTTGAAAGAGCATTG+GGG | 0.697316 | 1_4:-18618811 | Msa0154220:CDS |
| TACATGGTATGTGATTGGAA+GGG | 0.767981 | 1_4:-18618728 | Msa0154220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTAGATCAATTTCTAAT+TGG | - | chr1_4:18618700-18618719 | Msa0154220:CDS | 20.0% |
| !! | CAATTTCTAATTGGTTATAT+TGG | - | chr1_4:18618709-18618728 | Msa0154220:CDS | 20.0% |
| ! | ATGAAAATAGTCCAATTAGA+TGG | - | chr1_4:18619027-18619046 | Msa0154220:CDS | 25.0% |
| ! | TGAAAATAGTCCAATTAGAT+GGG | - | chr1_4:18619028-18619047 | Msa0154220:CDS | 25.0% |
| !! | ATTTATGGGGGTTTTATGTT+TGG | + | chr1_4:18618859-18618878 | None:intergenic | 30.0% |
| TCAGGATGAATGGAATTTAT+GGG | + | chr1_4:18618873-18618892 | None:intergenic | 30.0% | |
| GAAAATAGTCCAATTAGATG+GGG | - | chr1_4:18619029-18619048 | Msa0154220:CDS | 30.0% | |
| TCGATTTCTATTTCCAATGT+TGG | + | chr1_4:18619246-18619265 | None:intergenic | 30.0% | |
| ! | CACAACTTTTGTCATGCTTT+TGG | + | chr1_4:18618757-18618776 | None:intergenic | 35.0% |
| TCTCTTGGCTTACTAAGATT+TGG | + | chr1_4:18618798-18618817 | None:intergenic | 35.0% | |
| AGGATGAATGGAATTTATGG+GGG | + | chr1_4:18618871-18618890 | None:intergenic | 35.0% | |
| CAGGATGAATGGAATTTATG+GGG | + | chr1_4:18618872-18618891 | None:intergenic | 35.0% | |
| CTCAGGATGAATGGAATTTA+TGG | + | chr1_4:18618874-18618893 | None:intergenic | 35.0% | |
| CATAAATTCCATTCATCCTG+AGG | - | chr1_4:18618872-18618891 | Msa0154220:CDS | 35.0% | |
| GTAGTAGTACTAGTTGAAGA+AGG | + | chr1_4:18618927-18618946 | None:intergenic | 35.0% | |
| GAAAATGTAGGCTTCTCAAT+TGG | + | chr1_4:18618960-18618979 | None:intergenic | 35.0% | |
| ! | AGAAGCCTACATTTTCTCAA+GGG | - | chr1_4:18618964-18618983 | Msa0154220:CDS | 35.0% |
| TTCTTCCCTTGAGAAAATGT+AGG | + | chr1_4:18618972-18618991 | None:intergenic | 35.0% | |
| GGTTACTTCATTGTTTGGTA+TGG | - | chr1_4:18619061-18619080 | Msa0154220:CDS | 35.0% | |
| !! | AGTTGAGTTGAAAGAGCATT+GGG | - | chr1_4:18619118-18619137 | Msa0154220:CDS | 35.0% |
| TGGAAATTGTTAACAGCTCT+TGG | - | chr1_4:18619156-18619175 | Msa0154220:CDS | 35.0% | |
| CTCTTGGTTGCAATATATGT+TGG | - | chr1_4:18619172-18619191 | Msa0154220:CDS | 35.0% | |
| TACATGGTATGTGATTGGAA+GGG | - | chr1_4:18619202-18619221 | Msa0154220:CDS | 35.0% | |
| TTGGTGCGAATTGCACTATT+TGG | + | chr1_4:18618738-18618757 | None:intergenic | 40.0% | |
| GGCTTACTAAGATTTGGATC+AGG | + | chr1_4:18618792-18618811 | None:intergenic | 40.0% | |
| CCAATATTCCTCAGGATGAA+TGG | + | chr1_4:18618883-18618902 | None:intergenic | 40.0% | |
| CCATTCATCCTGAGGAATAT+TGG | - | chr1_4:18618880-18618899 | Msa0154220:CDS | 40.0% | |
| GAAGGAAGAACAGTAGTTGA+TGG | + | chr1_4:18618909-18618928 | None:intergenic | 40.0% | |
| ! | GAGAAGCCTACATTTTCTCA+AGG | - | chr1_4:18618963-18618982 | Msa0154220:CDS | 40.0% |
| CCAAACAATGAAGTAACCAC+TGG | + | chr1_4:18619059-18619078 | None:intergenic | 40.0% | |
| CCAGTGGTTACTTCATTGTT+TGG | - | chr1_4:18619056-18619075 | Msa0154220:CDS | 40.0% | |
| GCAGTTAGGTTACATGAAGT+AGG | - | chr1_4:18619086-18619105 | Msa0154220:CDS | 40.0% | |
| !! | CAGTTGAGTTGAAAGAGCAT+TGG | - | chr1_4:18619117-18619136 | Msa0154220:CDS | 40.0% |
| !! | GTTGAGTTGAAAGAGCATTG+GGG | - | chr1_4:18619119-18619138 | Msa0154220:CDS | 40.0% |
| !! | ATATGTTGGTAGCAGCTACA+TGG | - | chr1_4:18619186-18619205 | Msa0154220:CDS | 40.0% |
| CTACATGGTATGTGATTGGA+AGG | - | chr1_4:18619201-18619220 | Msa0154220:CDS | 40.0% | |
| AAGGGTTGCTGTAGAATTTG+TGG | - | chr1_4:18619220-18619239 | Msa0154220:CDS | 40.0% | |
| GTAGAATTTGTGGCCAACAT+TGG | - | chr1_4:18619230-18619249 | Msa0154220:CDS | 40.0% | |
| GATGGAGTCCAATATTCCTC+AGG | + | chr1_4:18618891-18618910 | None:intergenic | 45.0% | |
| ACTGGCAATCCCCATCTAAT+TGG | + | chr1_4:18619041-18619060 | None:intergenic | 45.0% | |
| AATTAGATGGGGATTGCCAG+TGG | - | chr1_4:18619040-18619059 | Msa0154220:CDS | 45.0% | |
| TGTTTGGTATGGCTGCAGTT+AGG | - | chr1_4:18619072-18619091 | Msa0154220:CDS | 45.0% | |
| GCAGCTACATGGTATGTGAT+TGG | - | chr1_4:18619197-18619216 | Msa0154220:CDS | 45.0% | |
| CTCTTTGCAGCTGCATCTCT+TGG | + | chr1_4:18618813-18618832 | None:intergenic | 50.0% | |
| !! | GAGTTGAAAGAGCATTGGGG+AGG | - | chr1_4:18619122-18619141 | Msa0154220:CDS | 50.0% |
| ! | TTGGGGAGGTTCTCTAGCTT+TGG | - | chr1_4:18619136-18619155 | Msa0154220:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 18618684 | 18619268 | 18618684 | ID=Msa0154220;Name=Msa0154220 |
| chr1_4 | mRNA | 18618684 | 18619268 | 18618684 | ID=Msa0154220-mRNA-1;Parent=Msa0154220;Name=Msa0154220-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|194 |
| chr1_4 | exon | 18618684 | 18619268 | 18618684 | ID=Msa0154220-mRNA-1:exon:6861;Parent=Msa0154220-mRNA-1 |
| chr1_4 | CDS | 18618684 | 18619268 | 18618684 | ID=Msa0154220-mRNA-1:cds;Parent=Msa0154220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
