AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070960 MtrunA17_Chr1g0176391 97.536 487 11 1 1 487 1 486 0.0 997
Msa0070960 MtrunA17_Chr7g0268041 61.157 484 160 9 14 487 16 481 0.0 550
Msa0070960 MtrunA17_Chr2g0307041 52.525 99 47 0 68 166 21 119 1.22e-22 99.8
Msa0070960 MtrunA17_Chr1g0184441 46.789 109 56 1 57 163 522 630 1.20e-19 92.4
Msa0070960 MtrunA17_Chr4g0073651 45.283 106 58 0 61 166 4 109 1.84e-17 84.7
Msa0070960 MtrunA17_Chr4g0049631 36.364 121 74 1 42 162 282 399 8.50e-14 73.6
Msa0070960 MtrunA17_Chr5g0434681 46.053 76 41 0 66 141 620 695 1.87e-12 70.1
Msa0070960 MtrunA17_Chr3g0093241 35.099 151 84 3 42 180 310 458 2.56e-12 68.9
Msa0070960 MtrunA17_Chr8g0376151 44.737 76 42 0 66 141 600 675 5.70e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070960 AT5G06560.1 52.863 524 202 14 1 485 1 518 4.15e-167 482
Msa0070960 AT3G11850.2 44.196 491 229 12 32 485 22 504 7.06e-123 369
Msa0070960 AT3G11850.1 44.196 491 229 12 32 485 22 504 7.06e-123 369
Msa0070960 AT3G54740.3 41.051 514 198 13 1 485 1 438 8.92e-106 322
Msa0070960 AT3G54740.6 41.051 514 198 13 1 485 1 438 8.92e-106 322
Msa0070960 AT3G54740.2 41.051 514 198 13 1 485 1 438 8.92e-106 322
Msa0070960 AT3G54740.5 41.051 514 198 13 1 485 1 438 8.92e-106 322
Msa0070960 AT3G54740.8 41.372 452 168 12 55 485 15 390 2.06e-95 294
Msa0070960 AT3G54740.1 41.372 452 168 12 55 485 15 390 2.06e-95 294
Msa0070960 AT3G54740.7 41.372 452 168 12 55 485 15 390 2.06e-95 294
Msa0070960 AT3G54740.4 41.372 452 168 12 55 485 15 390 2.06e-95 294
Msa0070960 AT2G24140.2 48.913 92 47 0 77 168 30 121 6.48e-20 90.9
Msa0070960 AT2G24140.3 48.913 92 47 0 77 168 30 121 6.48e-20 90.9
Msa0070960 AT4G30830.1 47.826 92 48 0 76 167 28 119 8.14e-20 91.3
Msa0070960 AT4G30830.2 47.826 92 48 0 76 167 28 119 8.14e-20 91.3
Msa0070960 AT5G16720.1 40.833 120 71 0 46 165 340 459 1.45e-18 89.4
Msa0070960 AT5G57830.1 47.321 112 59 0 66 177 19 130 9.09e-18 85.5
Msa0070960 AT2G30690.1 42.308 104 58 1 58 159 606 709 6.59e-17 84.3
Msa0070960 AT2G30690.2 42.308 104 58 1 58 159 606 709 6.59e-17 84.3
Msa0070960 AT1G08800.2 41.121 107 63 0 53 159 880 986 1.50e-15 80.1
Msa0070960 AT1G08800.4 41.121 107 63 0 53 159 880 986 1.50e-15 80.1
Msa0070960 AT1G08800.3 41.121 107 63 0 53 159 880 986 1.50e-15 80.1
Msa0070960 AT1G08800.1 41.121 107 63 0 53 159 880 986 1.50e-15 80.1
Msa0070960 AT1G74830.1 41.739 115 64 1 59 173 301 412 1.43e-14 76.6
Msa0070960 AT1G70750.1 43.011 93 53 0 73 165 423 515 8.90e-14 74.3
Msa0070960 AT2G24140.4 48.571 70 36 0 99 168 1 70 2.46e-13 70.9
Msa0070960 AT2G24140.1 48.571 70 36 0 99 168 1 70 2.46e-13 70.9
Msa0070960 AT4G13630.2 42.453 106 60 1 59 163 217 322 4.99e-12 68.6
Msa0070960 AT4G13630.1 42.453 106 60 1 59 163 217 322 4.99e-12 68.6
Msa0070960 AT1G18990.1 38.621 145 80 3 19 161 262 399 1.10e-11 67.4
Msa0070960 AT1G04890.1 41.346 104 47 1 71 160 105 208 1.19e-11 67.0

Find 154 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTATTGGTTGTAATTT+TGG 0.114230 1_2:+42252196 Msa0070960:five_prime_UTR
CTTATACTTGTTATTGTTCT+TGG 0.136537 1_2:-42253116 None:intergenic
ATATCTTTCTTGCTGGAAAA+AGG 0.156885 1_2:+42256524 Msa0070960:three_prime_UTR
CTCGCGTGGCTTGTCAAATT+TGG 0.173314 1_2:-42253019 None:intergenic
ACAATTGACTCTGTTCATTC+TGG 0.200824 1_2:+42253229 Msa0070960:CDS
GAAGCACGATGAGTTTAAAT+TGG 0.276035 1_2:+42252364 Msa0070960:CDS
AATAAGAAGCTTCTTAGAAT+TGG 0.288787 1_2:-42251674 None:intergenic
AAACACAGGATGATGAGTTT+TGG 0.300857 1_2:+42252725 Msa0070960:CDS
GCACCGGATAATGGCTTTAC+AGG 0.308345 1_2:+42253253 Msa0070960:CDS
CCTCCCCATATCTTTCTTGC+TGG 0.309677 1_2:+42256517 Msa0070960:three_prime_UTR
TCAGGAGGAACTTATGTCTT+TGG 0.312375 1_2:+42252640 Msa0070960:CDS
TGATGATTCCCTGATTCCTT+TGG 0.314429 1_2:-42253313 None:intergenic
TTATACTTGTTATTGTTCTT+GGG 0.322493 1_2:-42253115 None:intergenic
CAGCCGGCGGCGAAGGTCGC+CGG 0.330373 1_2:-42251790 None:intergenic
TGTGTGATTTGTTGATTTGC+TGG 0.334374 1_2:+42252057 Msa0070960:five_prime_UTR
GTCGCTTACGTGTGAAGTTC+AGG 0.334893 1_2:+42252697 Msa0070960:CDS
GGAAAACGGGAATCAATTTC+CGG 0.335275 1_2:-42251764 None:intergenic
CTCCGACGGCGTCTCCTTCA+AGG 0.339244 1_2:+42251822 Msa0070960:five_prime_UTR
AAATGTAATGTCATGTATAA+TGG 0.343360 1_2:+42252815 Msa0070960:CDS
CATTCTGGGGCACCGGATAA+TGG 0.354097 1_2:+42253244 Msa0070960:CDS
TTAAGGTCACTTACTTGCTT+TGG 0.364399 1_2:-42254081 None:intergenic
TATGCAGCAGAGAACGATTC+AGG 0.369549 1_2:+42252463 Msa0070960:CDS
TTTCAATAAAATGACAAATC+AGG 0.374248 1_2:-42252170 None:intergenic
GAAGCTTTACATGAGGCTTC+AGG 0.375689 1_2:+42253363 Msa0070960:CDS
TCCTCTGACTCAGCAACGTT+CGG 0.376250 1_2:+42253049 Msa0070960:CDS
GCAACCAGTCCAAAGGAATC+AGG 0.378139 1_2:+42253304 Msa0070960:CDS
AAGCTCCTCAAACGGTCATT+AGG 0.378165 1_2:-42252893 None:intergenic
AAGGTGGGTGGCGTGAAGGT+AGG 0.381615 1_2:+42252082 Msa0070960:five_prime_UTR
GACTGCTGTAGGTATATGTT+TGG 0.384215 1_2:+42256317 Msa0070960:intron
TGGGCTACCAGCTGACAGTA+TGG 0.389528 1_2:+42256337 Msa0070960:CDS
GACAAGTACCGAGATCTTGC+AGG 0.390060 1_2:-42253526 None:intergenic
GTTTGAGGAGCTTGGAGAAT+AGG 0.397127 1_2:+42252903 Msa0070960:CDS
TTCAGGCACTTGAGGCTGAT+AGG 0.398288 1_2:+42253380 Msa0070960:CDS
CATGTAAAGCTTCTTAATGT+AGG 0.398593 1_2:-42253353 None:intergenic
ATCATCGAAAACTCCAGCTT+TGG 0.399638 1_2:-42253278 None:intergenic
TTCAAATTCGAATTGTCCTC+TGG 0.399754 1_2:-42253157 None:intergenic
TCTCTCATATGGTTGGTTGT+TGG 0.400526 1_2:+42256645 Msa0070960:three_prime_UTR
GAAGGAGCGGGAATGGTGTT+TGG 0.403473 1_2:-42251591 None:intergenic
GGCTTTACAGGTTCCAAAGC+TGG 0.408092 1_2:+42253265 Msa0070960:CDS
GGTGGGATGTGTAAAGAAAT+AGG 0.411105 1_2:+42253070 Msa0070960:CDS
TTATTGAAAATTGAAGCTAT+TGG 0.411189 1_2:+42252184 Msa0070960:five_prime_UTR
CAATTGACTCTGTTCATTCT+GGG 0.412467 1_2:+42253230 Msa0070960:CDS
AGGTGGGTGGCGTGAAGGTA+GGG 0.418557 1_2:+42252083 Msa0070960:five_prime_UTR
ACCTGTGTCGTCGGTTGCGC+GGG 0.422138 1_2:+42252397 Msa0070960:CDS
TGAAATTGAAAGTAATTTGT+TGG 0.422705 1_2:+42256581 Msa0070960:three_prime_UTR
GGAGAATAGGATTTCTCAAA+TGG 0.426445 1_2:+42252916 Msa0070960:CDS
GATATGAGCATTCTCTCATA+TGG 0.430882 1_2:+42256634 Msa0070960:three_prime_UTR
TGGAAAATTACTAACCTTGA+AGG 0.433519 1_2:-42251836 None:intergenic
TAATGACCGTTTGAGGAGCT+TGG 0.436236 1_2:+42252895 Msa0070960:CDS
TGTTGATTTGCTGGAGAAGG+TGG 0.438814 1_2:+42252066 Msa0070960:five_prime_UTR
GGTGGGTGGCGTGAAGGTAG+GGG 0.440122 1_2:+42252084 Msa0070960:five_prime_UTR
GGATTTGAATGAGGAGTTGG+AGG 0.445102 1_2:+42252484 Msa0070960:CDS
ACAATACCCTTAGTTGAGTC+AGG 0.445558 1_2:-42256736 None:intergenic
ATTCCCTGATTCCTTTGGAC+TGG 0.453675 1_2:-42253308 None:intergenic
TTCTCAACCTGACTCAACTA+AGG 0.453981 1_2:+42256729 Msa0070960:three_prime_UTR
CTCTGTTCATTCTGGGGCAC+CGG 0.453986 1_2:+42253237 Msa0070960:CDS
GGAGAAAATGACGCATGATC+AGG 0.455281 1_2:+42252622 Msa0070960:CDS
TTGTTAAAATGTTGTGATTG+TGG 0.455782 1_2:+42252284 Msa0070960:CDS
AGGTCGCCGGAGCGGAAAAC+GGG 0.458609 1_2:-42251777 None:intergenic
GGAAGGGAATTGTCGATGGT+TGG 0.458645 1_2:+42252105 Msa0070960:five_prime_UTR
AAGGTCGCCGGAGCGGAAAA+CGG 0.461243 1_2:-42251778 None:intergenic
GTTACGGAGAAAGTTATTGT+TGG 0.461801 1_2:+42252989 Msa0070960:CDS
TCAGGATTTGAATGAGGAGT+TGG 0.463110 1_2:+42252481 Msa0070960:CDS
TTTGAGGTTGCAGAGGGAAA+AGG 0.465476 1_2:+42252556 Msa0070960:CDS
AGTTGAGTCAGGTTGAGAAT+AGG 0.468852 1_2:-42256725 None:intergenic
TTTGAATGAGGAGTTGGAGG+AGG 0.470668 1_2:+42252487 Msa0070960:CDS
TCAACGGCAGCCGGCGGCGA+AGG 0.470704 1_2:-42251797 None:intergenic
GATATTGAGAAATATGCATT+TGG 0.470801 1_2:+42252863 Msa0070960:CDS
TTGTGGATGTAGTTGTTCCT+TGG 0.472863 1_2:+42252301 Msa0070960:CDS
TGCTTCCACAGCTGCGAATG+AGG 0.477326 1_2:+42252520 Msa0070960:CDS
ATGGTGTTTGGTGGGAACAA+TGG 0.477536 1_2:-42251579 None:intergenic
TTTAAAGGAGGGTATTCGTA+TGG 0.487165 1_2:-42252794 None:intergenic
GGAAAAGGCGGAAGTTCAAA+TGG 0.490761 1_2:+42252571 Msa0070960:CDS
TGGATGTAGTTGTTCCTTGG+TGG 0.490768 1_2:+42252304 Msa0070960:CDS
GAACCTGTAAAGCCATTATC+CGG 0.491366 1_2:-42253256 None:intergenic
ATTTGTTGATTTGCTGGAGA+AGG 0.504378 1_2:+42252063 Msa0070960:five_prime_UTR
TCAGGCACTTGAGGCTGATA+GGG 0.504864 1_2:+42253381 Msa0070960:CDS
TTGTTCTTGGGAGACTCTGT+AGG 0.505523 1_2:-42253103 None:intergenic
CATGAGGCTTCAGGCACTTG+AGG 0.506019 1_2:+42253372 Msa0070960:CDS
TACCTGTGTCGTCGGTTGCG+CGG 0.506467 1_2:+42252396 Msa0070960:CDS
GGGCTACCAGCTGACAGTAT+GGG 0.507736 1_2:+42256338 Msa0070960:CDS
ACTGCTGTAGGTATATGTTT+GGG 0.508143 1_2:+42256318 Msa0070960:intron
TCACTTCTGCACTGAAGTTG+TGG 0.511391 1_2:-42256809 None:intergenic
GGACAATTCGAATTTGAAGA+AGG 0.513060 1_2:+42253162 Msa0070960:CDS
GTCGGAGAATCAACGGCAGC+CGG 0.516611 1_2:-42251806 None:intergenic
TTTAACAAATCCCTCGGAGA+TGG 0.517649 1_2:-42252269 None:intergenic
ACCATCGACCTGGCTGTAAG+TGG 0.519205 1_2:-42252948 None:intergenic
GGAGCGGGAATGGTGTTTGG+TGG 0.520071 1_2:-42251588 None:intergenic
AGTTGTGGAAGTTAAAGTTA+TGG 0.527722 1_2:-42256794 None:intergenic
TCTGACTCAGCAACGTTCGG+TGG 0.530457 1_2:+42253052 Msa0070960:CDS
TGTTCTTGGGAGACTCTGTA+GGG 0.530579 1_2:-42253102 None:intergenic
GTTGATTTGCTGGAGAAGGT+GGG 0.531139 1_2:+42252067 Msa0070960:five_prime_UTR
GAACAATAACAAGTATAAGA+AGG 0.531882 1_2:+42253120 Msa0070960:CDS
ATGTAAAGCTTCTTAATGTA+GGG 0.531958 1_2:-42253352 None:intergenic
AAGAATGAATGAATGAATGA+AGG 0.532019 1_2:-42251609 None:intergenic
ATCACCTTCGACCTCATCCT+CGG 0.533257 1_2:-42252753 None:intergenic
AACGATTCAGGATTTGAATG+AGG 0.533822 1_2:+42252475 Msa0070960:CDS
AAACTCCTAATGACCGTTTG+AGG 0.535504 1_2:+42252888 Msa0070960:CDS
GCTCCGGCGACCTTCGCCGC+CGG 0.536269 1_2:+42251787 Msa0070960:five_prime_UTR
CATTGCCTCATTCGCAGCTG+TGG 0.537747 1_2:-42252525 None:intergenic
GAGCGGGAATGGTGTTTGGT+GGG 0.542857 1_2:-42251587 None:intergenic
GAATGAATGAATGAAGGAGC+GGG 0.543363 1_2:-42251603 None:intergenic
TGAGCATTCTCTCATATGGT+TGG 0.544257 1_2:+42256638 Msa0070960:three_prime_UTR
CAACCAGTCCAAAGGAATCA+GGG 0.548648 1_2:+42253305 Msa0070960:CDS
AAAGGAGGGTATTCGTATGG+AGG 0.549905 1_2:-42252791 None:intergenic
TGATAGGGAATCAATGAGGC+AGG 0.551938 1_2:+42253396 Msa0070960:CDS
CGAGCAAGCCTGCAAGATCT+CGG 0.551994 1_2:+42253518 Msa0070960:CDS
AGCAAGCCCATACTGTCAGC+TGG 0.553778 1_2:-42256344 None:intergenic
AATGAATGAAGGAGCGGGAA+TGG 0.556590 1_2:-42251598 None:intergenic
GGTGGCGTGAAGGTAGGGGA+AGG 0.558365 1_2:+42252088 Msa0070960:five_prime_UTR
GGGAGACTCTGTAGGGAACT+CGG 0.562340 1_2:-42253095 None:intergenic
TATTCTCCAAGCTCCTCAAA+CGG 0.563369 1_2:-42252901 None:intergenic
TAGGGGAAGGGAATTGTCGA+TGG 0.564241 1_2:+42252101 Msa0070960:five_prime_UTR
TAGTGTTACTAAAATTCAGT+TGG 0.568936 1_2:-42256462 None:intergenic
GTGGCGTGAAGGTAGGGGAA+GGG 0.574344 1_2:+42252089 Msa0070960:five_prime_UTR
GGCTGCCGTTGATTCTCCGA+CGG 0.574424 1_2:+42251808 Msa0070960:five_prime_UTR
GGAGAAGGTGGGTGGCGTGA+AGG 0.579153 1_2:+42252078 Msa0070960:five_prime_UTR
ACCGAACGTTGCTGAGTCAG+AGG 0.583019 1_2:-42253050 None:intergenic
CTGACTCAGCAACGTTCGGT+GGG 0.585081 1_2:+42253053 Msa0070960:CDS
ATGTGTTGTGTTACGTGAGA+TGG 0.587855 1_2:+42252436 Msa0070960:CDS
GAAAACTCCCACTTACAGCC+AGG 0.590810 1_2:+42252940 Msa0070960:CDS
GGCGGCGAAGGTCGCCGGAG+CGG 0.593170 1_2:-42251785 None:intergenic
CAATAAAATCACCATCGACC+TGG 0.598425 1_2:-42252958 None:intergenic
AAGGTAGATAATGCTTCAGA+AGG 0.602096 1_2:+42253181 Msa0070960:CDS
AGACGCCGTCGGAGAATCAA+CGG 0.604160 1_2:-42251813 None:intergenic
AGCACAGGTTGTGTTACTGA+AGG 0.606214 1_2:+42253444 Msa0070960:CDS
AATGAGCACAGATAAAGCAC+AGG 0.607100 1_2:+42253429 Msa0070960:CDS
ATGTATTTCAAGTACACAAG+TGG 0.608743 1_2:+42256406 Msa0070960:CDS
GGAGAATCAACGGCAGCCGG+CGG 0.612383 1_2:-42251803 None:intergenic
CCCACTTACAGCCAGGTCGA+TGG 0.613551 1_2:+42252947 Msa0070960:CDS
AATTGACTCTGTTCATTCTG+GGG 0.616386 1_2:+42253231 Msa0070960:CDS
CCAGCAAGAAAGATATGGGG+AGG 0.616766 1_2:-42256517 None:intergenic
TCTCAACCTGACTCAACTAA+GGG 0.616933 1_2:+42256730 Msa0070960:three_prime_UTR
TAATGTCATGTATAATGGCA+TGG 0.619732 1_2:+42252820 Msa0070960:CDS
ACATTAAGAAGCTTTACATG+AGG 0.620076 1_2:+42253356 Msa0070960:CDS
TGATTATGCAACCAGTCCAA+AGG 0.622802 1_2:+42253297 Msa0070960:CDS
TTCAGAACATTGTTCCACCA+AGG 0.625495 1_2:-42252318 None:intergenic
AATGGATGCGATCTGTTAAG+CGG 0.631622 1_2:+42252342 Msa0070960:CDS
AACCTTGAAGGAGACGCCGT+CGG 0.631800 1_2:-42251824 None:intergenic
ACCCGCGCAACCGACGACAC+AGG 0.633336 1_2:-42252398 None:intergenic
GAAAATGACGCATGATCAGG+AGG 0.634038 1_2:+42252625 Msa0070960:CDS
CCATCGACCTGGCTGTAAGT+GGG 0.639457 1_2:-42252947 None:intergenic
TTGACAAAAGAACAAATGCA+AGG 0.639746 1_2:+42256375 Msa0070960:CDS
TAGTGAATTACCTGTGTCGT+CGG 0.646306 1_2:+42252388 Msa0070960:CDS
TGTATTTCAAGTACACAAGT+GGG 0.647014 1_2:+42256407 Msa0070960:CDS
TGAATGAATGAATGAAGGAG+CGG 0.648063 1_2:-42251604 None:intergenic
GAGGTTGCAGAGGGAAAAGG+CGG 0.649166 1_2:+42252559 Msa0070960:CDS
TTTCCAGCAAGAAAGATATG+GGG 0.653128 1_2:-42256520 None:intergenic
AAGTTCAGGCTTATAAACAC+AGG 0.657321 1_2:+42252711 Msa0070960:CDS
GGATTATTTCTCTCAACCAG+AGG 0.660219 1_2:+42253141 Msa0070960:CDS
GATTTGCTGGAGAAGGTGGG+TGG 0.665421 1_2:+42252070 Msa0070960:five_prime_UTR
TACACCGAGGATGAGGTCGA+AGG 0.669244 1_2:+42252749 Msa0070960:CDS
GTACTTGAAATACATCTCTG+TGG 0.712587 1_2:-42256398 None:intergenic
AGGCTGATAGGGAATCAATG+AGG 0.730909 1_2:+42253392 Msa0070960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCCTTTTTTTTTTTATT+TGG + chr1_2:42251713-42251732 Msa0070960:five_prime_UTR 10.0%
!! TTTACCAAATAAAAAAAAAA+AGG - chr1_2:42251720-42251739 None:intergenic 10.0%
!!! TGTTAATTTTTTTTGTTATT+TGG + chr1_2:42251992-42252011 Msa0070960:intron 10.0%
!!! TTTATTTTTTTTTTGTTTAG+TGG + chr1_2:42254023-42254042 Msa0070960:intron 10.0%
!! AATAAATTAAAAAGAATACA+AGG - chr1_2:42256850-42256869 None:intergenic 10.0%
!!! TTGAAATTTTTGTCAAATTT+GGG + chr1_2:42251875-42251894 Msa0070960:intron 15.0%
!!! AAAGAATCGATTTTTATTAT+TGG + chr1_2:42251935-42251954 Msa0070960:intron 15.0%
!!! AAGAATCGATTTTTATTATT+GGG + chr1_2:42251936-42251955 Msa0070960:intron 15.0%
!!! TGTTTTTTGTTTTTGTTTTT+AGG + chr1_2:42252026-42252045 Msa0070960:intron 15.0%
!!! TTTTATTGGAAAAAATGTTA+CGG + chr1_2:42252973-42252992 Msa0070960:CDS 15.0%
!!! AAATGTATTTTTTTTCATCA+GGG - chr1_2:42253967-42253986 None:intergenic 15.0%
!! ATGAAAAAAAATACATTTCA+TGG + chr1_2:42253969-42253988 Msa0070960:intron 15.0%
!!! ATTTTATAGGGTAATTTATA+GGG - chr1_2:42255018-42255037 None:intergenic 15.0%
!!! AATTTTATAGGGTAATTTAT+AGG - chr1_2:42255019-42255038 None:intergenic 15.0%
!!! ACTTTGGTAATAATTTTATA+GGG - chr1_2:42255030-42255049 None:intergenic 15.0%
!!! AACTTTGGTAATAATTTTAT+AGG - chr1_2:42255031-42255050 None:intergenic 15.0%
!! TATATATAAATTTGTGAAAC+TGG - chr1_2:42255194-42255213 None:intergenic 15.0%
!! AATTTATATATACATGCATA+TGG + chr1_2:42255202-42255221 Msa0070960:intron 15.0%
!!! GTTGAAATTTTTGTCAAATT+TGG + chr1_2:42251874-42251893 Msa0070960:intron 20.0%
!!! TGAAATTTTTGTCAAATTTG+GGG + chr1_2:42251876-42251895 Msa0070960:intron 20.0%
!!! TAGGATTTTAGGTTAATTTT+AGG + chr1_2:42251903-42251922 Msa0070960:intron 20.0%
!!! AGAATCGATTTTTATTATTG+GGG + chr1_2:42251937-42251956 Msa0070960:intron 20.0%
!! TTTCAATAAAATGACAAATC+AGG - chr1_2:42252173-42252192 None:intergenic 20.0%
!! TTATTGAAAATTGAAGCTAT+TGG + chr1_2:42252184-42252203 Msa0070960:five_prime_UTR 20.0%
!!! TACATGACATTACATTTTAA+AGG - chr1_2:42252812-42252831 None:intergenic 20.0%
!! AAATGTAATGTCATGTATAA+TGG + chr1_2:42252815-42252834 Msa0070960:CDS 20.0%
!!! TTATACTTGTTATTGTTCTT+GGG - chr1_2:42253118-42253137 None:intergenic 20.0%
!! AAAAGTAAACAATGATGAAA+TGG - chr1_2:42253614-42253633 None:intergenic 20.0%
!! TTTCAACTAATGATTTATTG+CGG + chr1_2:42253631-42253650 Msa0070960:intron 20.0%
!!! GAAATGTATTTTTTTTCATC+AGG - chr1_2:42253968-42253987 None:intergenic 20.0%
!! TTGAAATAACTTATAACCAT+AGG - chr1_2:42254388-42254407 None:intergenic 20.0%
!!! ATGGTTATAAGTTATTTCAA+AGG + chr1_2:42254388-42254407 Msa0070960:intron 20.0%
!!! TTATAAGTTATTTCAAAGGA+AGG + chr1_2:42254392-42254411 Msa0070960:intron 20.0%
!!! TACTGTACTTTTTGTTTTTT+TGG + chr1_2:42254844-42254863 Msa0070960:intron 20.0%
!!! ATGATTACATTTTGATGTTT+TGG - chr1_2:42255395-42255414 None:intergenic 20.0%
!! ATAGTTATCCACTAATATAT+AGG + chr1_2:42255554-42255573 Msa0070960:intron 20.0%
!!! ACTTCGGTAATAATTTTATA+GGG - chr1_2:42255960-42255979 None:intergenic 20.0%
!!! AACTTCGGTAATAATTTTAT+AGG - chr1_2:42255961-42255980 None:intergenic 20.0%
!!! TCTATTGATTGAAATTCAAA+TGG + chr1_2:42256070-42256089 Msa0070960:intron 20.0%
!!! TGAAATTGAAAGTAATTTGT+TGG + chr1_2:42256581-42256600 Msa0070960:three_prime_UTR 20.0%
! AAGAATGAATGAATGAATGA+AGG - chr1_2:42251612-42251631 None:intergenic 25.0%
! AATAAGAAGCTTCTTAGAAT+TGG - chr1_2:42251677-42251696 None:intergenic 25.0%
!! TCATTTTCTGAACTTTTTAC+CGG + chr1_2:42251745-42251764 Msa0070960:five_prime_UTR 25.0%
!! AGGTTAGTAATTTTCCATTT+CGG + chr1_2:42251842-42251861 Msa0070960:intron 25.0%
!! GATTTTTATTATTGGGGTTT+AGG + chr1_2:42251943-42251962 Msa0070960:intron 25.0%
! TTGTTAAAATGTTGTGATTG+TGG + chr1_2:42252284-42252303 Msa0070960:CDS 25.0%
!!! TGACATTACATTTTAAAGGA+GGG - chr1_2:42252808-42252827 None:intergenic 25.0%
!!! ATGACATTACATTTTAAAGG+AGG - chr1_2:42252809-42252828 None:intergenic 25.0%
! GATATTGAGAAATATGCATT+TGG + chr1_2:42252863-42252882 Msa0070960:CDS 25.0%
!!! CTTATACTTGTTATTGTTCT+TGG - chr1_2:42253119-42253138 None:intergenic 25.0%
! GAACAATAACAAGTATAAGA+AGG + chr1_2:42253120-42253139 Msa0070960:CDS 25.0%
! ATGTAAAGCTTCTTAATGTA+GGG - chr1_2:42253355-42253374 None:intergenic 25.0%
! TTAAGGCATGTTTGAAAAAT+TGG - chr1_2:42253694-42253713 None:intergenic 25.0%
!!! TTTTTCAAACATGCCTTAAT+TGG + chr1_2:42253695-42253714 Msa0070960:intron 25.0%
!! CAAAATTTAGCTTCCAATTA+AGG - chr1_2:42253711-42253730 None:intergenic 25.0%
! TTATTATAGACATTTGCCTT+TGG + chr1_2:42253852-42253871 Msa0070960:intron 25.0%
!! TTCTCAATAAAAGGACTTTT+GGG - chr1_2:42254342-42254361 None:intergenic 25.0%
! AACTTTCAAAGATAAAGACA+TGG - chr1_2:42254451-42254470 None:intergenic 25.0%
! GGAAACTAACATATATAGAA+GGG - chr1_2:42254609-42254628 None:intergenic 25.0%
! AGGAAACTAACATATATAGA+AGG - chr1_2:42254610-42254629 None:intergenic 25.0%
!!! TTGTTTTTTTGGAACTTCTT+TGG + chr1_2:42254855-42254874 Msa0070960:intron 25.0%
! AATTAATAACAACATCACAG+TGG - chr1_2:42254953-42254972 None:intergenic 25.0%
!! TTGTTATTAATTATGCTTCC+TGG + chr1_2:42254961-42254980 Msa0070960:intron 25.0%
! TATAAATTTGTGAAACTGGT+AGG - chr1_2:42255190-42255209 None:intergenic 25.0%
!! TATGTAGGTTATAGCATTTT+GGG - chr1_2:42255285-42255304 None:intergenic 25.0%
!! TTATGTAGGTTATAGCATTT+TGG - chr1_2:42255286-42255305 None:intergenic 25.0%
! ACCTACATAAACTCAAATTT+AGG + chr1_2:42255296-42255315 Msa0070960:intron 25.0%
!! TCCTAAATTTGAGTTTATGT+AGG - chr1_2:42255300-42255319 None:intergenic 25.0%
!!! ATGTTTTGGATTTTCTTATG+GGG - chr1_2:42255381-42255400 None:intergenic 25.0%
!!! GATGTTTTGGATTTTCTTAT+GGG - chr1_2:42255382-42255401 None:intergenic 25.0%
!!! TGATGTTTTGGATTTTCTTA+TGG - chr1_2:42255383-42255402 None:intergenic 25.0%
! AGTTCGTACACATAAAAAAT+TGG + chr1_2:42255531-42255550 Msa0070960:intron 25.0%
! CAACTAATCCTATATATTAG+TGG - chr1_2:42255565-42255584 None:intergenic 25.0%
!!! TATGCTATCATGTTTTTTAG+AGG + chr1_2:42255073-42255092 Msa0070960:intron 25.0%
! ACTATTCTATAGTTGGAAAT+TGG - chr1_2:42256152-42256171 None:intergenic 25.0%
! TGTCAAGCATTATCATTATT+CGG - chr1_2:42256238-42256257 None:intergenic 25.0%
!! AATTCGCAGTTTTCAAATTT+CGG + chr1_2:42256435-42256454 Msa0070960:exon 25.0%
!! TAGTGTTACTAAAATTCAGT+TGG - chr1_2:42256465-42256484 None:intergenic 25.0%
GGAACAATGGAAAAAATTGA+AGG - chr1_2:42251569-42251588 None:intergenic 30.0%
! AACGTGAATTTCACACTTTT+CGG + chr1_2:42251644-42251663 Msa0070960:five_prime_UTR 30.0%
TGGAAAATTACTAACCTTGA+AGG - chr1_2:42251839-42251858 None:intergenic 30.0%
!! GAAGCTATTGGTTGTAATTT+TGG + chr1_2:42252196-42252215 Msa0070960:five_prime_UTR 30.0%
! TGGTTGTAATTTTGGATTGT+TGG + chr1_2:42252204-42252223 Msa0070960:five_prime_UTR 30.0%
! TGTAATTTTGGATTGTTGGA+AGG + chr1_2:42252208-42252227 Msa0070960:five_prime_UTR 30.0%
!! CAACATTTTAACAAATCCCT+CGG - chr1_2:42252278-42252297 None:intergenic 30.0%
!! TGGAACAATGTTCTGAAAAA+TGG + chr1_2:42252324-42252343 Msa0070960:CDS 30.0%
TAATGTCATGTATAATGGCA+TGG + chr1_2:42252820-42252839 Msa0070960:CDS 30.0%
CATGTAAAGCTTCTTAATGT+AGG - chr1_2:42253356-42253375 None:intergenic 30.0%
ACATTAAGAAGCTTTACATG+AGG + chr1_2:42253356-42253375 Msa0070960:CDS 30.0%
! TCGGTACTTGTCAATTTTTA+AGG + chr1_2:42253537-42253556 Msa0070960:CDS 30.0%
CTAGATAACGTTTACATACA+GGG - chr1_2:42253831-42253850 None:intergenic 30.0%
!!! ATCAGAGTATTTTTTGTGAG+GGG - chr1_2:42253891-42253910 None:intergenic 30.0%
!!! GATCAGAGTATTTTTTGTGA+GGG - chr1_2:42253892-42253911 None:intergenic 30.0%
!!! AGATCAGAGTATTTTTTGTG+AGG - chr1_2:42253893-42253912 None:intergenic 30.0%
! TTTCATGGTAGATTTTGCAA+TGG + chr1_2:42253984-42254003 Msa0070960:intron 30.0%
!!! GGATCACATCAATTGTTTTT+TGG + chr1_2:42254044-42254063 Msa0070960:CDS 30.0%
AGTAGTCAGGAAAAATGTTA+AGG - chr1_2:42254101-42254120 None:intergenic 30.0%
ATTGTTACATGTGTTATCGA+TGG + chr1_2:42254154-42254173 Msa0070960:intron 30.0%
TATTTCAAACTCACATCACT+AGG - chr1_2:42254294-42254313 None:intergenic 30.0%
! CTTCTCAATAAAAGGACTTT+TGG - chr1_2:42254343-42254362 None:intergenic 30.0%
! CAAAAGTCCTTTTATTGAGA+AGG + chr1_2:42254341-42254360 Msa0070960:intron 30.0%
AGAACTACCTTCTCAATAAA+AGG - chr1_2:42254351-42254370 None:intergenic 30.0%
TATGAAGTTTCAATGACAAC+TGG - chr1_2:42254476-42254495 None:intergenic 30.0%
!!! TTTGGTTTTCAAAGTGCATA+TGG + chr1_2:42254505-42254524 Msa0070960:intron 30.0%
!! TTGGTTTTCAAAGTGCATAT+GGG + chr1_2:42254506-42254525 Msa0070960:intron 30.0%
GGAAAACACTTCTTAATTGT+TGG + chr1_2:42254527-42254546 Msa0070960:intron 30.0%
ATTCTCCTTCGTATCAATTT+CGG + chr1_2:42254707-42254726 Msa0070960:intron 30.0%
ACATTTAGTGTGTTAGTCAT+CGG + chr1_2:42254786-42254805 Msa0070960:intron 30.0%
!! CTTTGGTAGTTTTTGAAAGT+TGG + chr1_2:42254872-42254891 Msa0070960:intron 30.0%
TTGATGGAACTGTATCAATA+TGG - chr1_2:42254903-42254922 None:intergenic 30.0%
!!! CATCTGTTTTGTTTTAAACC+AGG - chr1_2:42254982-42255001 None:intergenic 30.0%
ATTTATAGGGTAGTTTCACA+GGG - chr1_2:42255005-42255024 None:intergenic 30.0%
AATTTATAGGGTAGTTTCAC+AGG - chr1_2:42255006-42255025 None:intergenic 30.0%
!!! GCTATCATGTTTTTTAGACT+AGG + chr1_2:42255076-42255095 Msa0070960:intron 30.0%
TGCATATAAATCGACACAAT+TGG + chr1_2:42255236-42255255 Msa0070960:intron 30.0%
GCATATAAATCGACACAATT+GGG + chr1_2:42255237-42255256 Msa0070960:intron 30.0%
!!! GTTCATTAAAGGCATCTTTT+GGG - chr1_2:42255653-42255672 None:intergenic 30.0%
!!! AGTTCATTAAAGGCATCTTT+TGG - chr1_2:42255654-42255673 None:intergenic 30.0%
AAAAGATGCCTTTAATGAAC+TGG + chr1_2:42255653-42255672 Msa0070960:intron 30.0%
AAAGATGCCTTTAATGAACT+GGG + chr1_2:42255654-42255673 Msa0070960:intron 30.0%
! TTTCTCAGATATGTTTTCGT+GGG - chr1_2:42255692-42255711 None:intergenic 30.0%
AATCTGCCAATTCTGTTATT+GGG - chr1_2:42255715-42255734 None:intergenic 30.0%
CTATTTAAGTATTATGCCCA+TGG - chr1_2:42255866-42255885 None:intergenic 30.0%
!!! CATCTGTTTTGTTTTAAACC+AGG - chr1_2:42254982-42255001 None:intergenic 30.0%
! TTTTATAGGGTAGTTTCACA+GGG - chr1_2:42255947-42255966 None:intergenic 30.0%
! ATTTTATAGGGTAGTTTCAC+AGG - chr1_2:42255948-42255967 None:intergenic 30.0%
! CCGATTTTCAAAAATAGTGA+GGG - chr1_2:42256101-42256120 None:intergenic 30.0%
!!! CCCTCACTATTTTTGAAAAT+CGG + chr1_2:42256098-42256117 Msa0070960:intron 30.0%
!! ACCGATTTTCAAAAATAGTG+AGG - chr1_2:42256102-42256121 None:intergenic 30.0%
GTAACACACTATTCTATAGT+TGG - chr1_2:42256159-42256178 None:intergenic 30.0%
AAGAATATCATGCTTAGCAT+AGG + chr1_2:42256189-42256208 Msa0070960:intron 30.0%
! TTGCATTTGTTCTTTTGTCA+AGG - chr1_2:42256376-42256395 None:intergenic 30.0%
TTGACAAAAGAACAAATGCA+AGG + chr1_2:42256375-42256394 Msa0070960:CDS 30.0%
! ATGTATTTCAAGTACACAAG+TGG + chr1_2:42256406-42256425 Msa0070960:CDS 30.0%
! TGTATTTCAAGTACACAAGT+GGG + chr1_2:42256407-42256426 Msa0070960:CDS 30.0%
! TTTTCCAGCAAGAAAGATAT+GGG - chr1_2:42256524-42256543 None:intergenic 30.0%
! TTTTTCCAGCAAGAAAGATA+TGG - chr1_2:42256525-42256544 None:intergenic 30.0%
ATATCTTTCTTGCTGGAAAA+AGG + chr1_2:42256524-42256543 Msa0070960:three_prime_UTR 30.0%
TATCTTTCTTGCTGGAAAAA+GGG + chr1_2:42256525-42256544 Msa0070960:three_prime_UTR 30.0%
! TTTTGTACATAACGTATTGC+TGG + chr1_2:42256677-42256696 Msa0070960:three_prime_UTR 30.0%
AGTTGTGGAAGTTAAAGTTA+TGG - chr1_2:42256797-42256816 None:intergenic 30.0%
TGAATGAATGAATGAAGGAG+CGG - chr1_2:42251607-42251626 None:intergenic 35.0%
! ACGTGAATTTCACACTTTTC+GGG + chr1_2:42251645-42251664 Msa0070960:five_prime_UTR 35.0%
TTGTCAAATTTGGGGAAAGT+AGG + chr1_2:42251884-42251903 Msa0070960:intron 35.0%
! TTTGGGGAAAGTAGGATTTT+AGG + chr1_2:42251892-42251911 Msa0070960:intron 35.0%
!! TGTGTGATTTGTTGATTTGC+TGG + chr1_2:42252057-42252076 Msa0070960:five_prime_UTR 35.0%
!! ATTTGTTGATTTGCTGGAGA+AGG + chr1_2:42252063-42252082 Msa0070960:five_prime_UTR 35.0%
!!! ATTGTTGGAAGGTTTTGAGT+GGG + chr1_2:42252219-42252238 Msa0070960:five_prime_UTR 35.0%
GAAGCACGATGAGTTTAAAT+TGG + chr1_2:42252364-42252383 Msa0070960:CDS 35.0%
AACGATTCAGGATTTGAATG+AGG + chr1_2:42252475-42252494 Msa0070960:CDS 35.0%
! TCAATTTAAGCGTTTTGCAG+AGG + chr1_2:42252601-42252620 Msa0070960:CDS 35.0%
AAGTTCAGGCTTATAAACAC+AGG + chr1_2:42252711-42252730 Msa0070960:CDS 35.0%
! AAACACAGGATGATGAGTTT+TGG + chr1_2:42252725-42252744 Msa0070960:CDS 35.0%
! AACACAGGATGATGAGTTTT+GGG + chr1_2:42252726-42252745 Msa0070960:CDS 35.0%
!! TTTAAAGGAGGGTATTCGTA+TGG - chr1_2:42252797-42252816 None:intergenic 35.0%
GGAGAATAGGATTTCTCAAA+TGG + chr1_2:42252916-42252935 Msa0070960:CDS 35.0%
GTTACGGAGAAAGTTATTGT+TGG + chr1_2:42252989-42253008 Msa0070960:CDS 35.0%
TTCAAATTCGAATTGTCCTC+TGG - chr1_2:42253160-42253179 None:intergenic 35.0%
GGACAATTCGAATTTGAAGA+AGG + chr1_2:42253162-42253181 Msa0070960:CDS 35.0%
AAGGTAGATAATGCTTCAGA+AGG + chr1_2:42253181-42253200 Msa0070960:CDS 35.0%
! ACAATTGACTCTGTTCATTC+TGG + chr1_2:42253229-42253248 Msa0070960:CDS 35.0%
! CAATTGACTCTGTTCATTCT+GGG + chr1_2:42253230-42253249 Msa0070960:CDS 35.0%
! AATTGACTCTGTTCATTCTG+GGG + chr1_2:42253231-42253250 Msa0070960:CDS 35.0%
!! CTCGTACTCATTTTTCTTTG+CGG - chr1_2:42253502-42253521 None:intergenic 35.0%
CCTAGATAACGTTTACATAC+AGG - chr1_2:42253832-42253851 None:intergenic 35.0%
CCTGTATGTAAACGTTATCT+AGG + chr1_2:42253829-42253848 Msa0070960:intron 35.0%
!!! TCAGAGTATTTTTTGTGAGG+GGG - chr1_2:42253890-42253909 None:intergenic 35.0%
TTAAGGTCACTTACTTGCTT+TGG - chr1_2:42254084-42254103 None:intergenic 35.0%
! TATGTATGTTCTGAGTAGTC+AGG - chr1_2:42254114-42254133 None:intergenic 35.0%
TTTATGGTGGCTTAAAATGG+CGG - chr1_2:42254195-42254214 None:intergenic 35.0%
! CGTTTTATGGTGGCTTAAAA+TGG - chr1_2:42254198-42254217 None:intergenic 35.0%
CAATCAGTGCTGTCAAATAT+CGG - chr1_2:42254256-42254275 None:intergenic 35.0%
!! GGTAGTTCTTTTGATTCAAG+TGG + chr1_2:42254362-42254381 Msa0070960:intron 35.0%
! AACTTCATAGCATCTAGCTT+TGG + chr1_2:42254487-42254506 Msa0070960:intron 35.0%
TAGTTTCCTCTTTCTAACAC+CGG + chr1_2:42254761-42254780 Msa0070960:intron 35.0%
ACTAACACACTAAATGTTGC+CGG - chr1_2:42254783-42254802 None:intergenic 35.0%
TACAGTTCCATCAAAGCATA+TGG + chr1_2:42254909-42254928 Msa0070960:intron 35.0%
!!! AGTGGAATTGCTATTTTCGA+AGG - chr1_2:42254935-42254954 None:intergenic 35.0%
GACATCATCAAACTGAACTT+TGG - chr1_2:42255046-42255065 None:intergenic 35.0%
AGGATCTCAACTAACTACTT+TGG - chr1_2:42255104-42255123 None:intergenic 35.0%
!!! TTTTTCACCCTGCTTTGTTT+TGG - chr1_2:42255484-42255503 None:intergenic 35.0%
AAAACAAAGCAGGGTGAAAA+AGG + chr1_2:42255483-42255502 Msa0070960:intron 35.0%
AAACAAAGCAGGGTGAAAAA+GGG + chr1_2:42255484-42255503 Msa0070960:intron 35.0%
AGTAGAAAACTACGTTAGAG+AGG + chr1_2:42255507-42255526 Msa0070960:intron 35.0%
GTAGAAAACTACGTTAGAGA+GGG + chr1_2:42255508-42255527 Msa0070960:intron 35.0%
! GTTTCTCAGATATGTTTTCG+TGG - chr1_2:42255693-42255712 None:intergenic 35.0%
GAGAAACCCAATAACAGAAT+TGG + chr1_2:42255706-42255725 Msa0070960:intron 35.0%
CAATCTGCCAATTCTGTTAT+TGG - chr1_2:42255716-42255735 None:intergenic 35.0%
CAATAACAGAATTGGCAGAT+TGG + chr1_2:42255714-42255733 Msa0070960:intron 35.0%
!! CGTATGATCGTATGGTTTTA+CGG - chr1_2:42255836-42255855 None:intergenic 35.0%
GTATGAATCGTATGATCGTA+TGG - chr1_2:42255844-42255863 None:intergenic 35.0%
GATCATACGATTCATACCAT+GGG + chr1_2:42255847-42255866 Msa0070960:intron 35.0%
ATTAACAGACAACTTCGCAA+TGG - chr1_2:42255894-42255913 None:intergenic 35.0%
TGTCTGTTAATTATGCTTCC+TGG + chr1_2:42255903-42255922 Msa0070960:intron 35.0%
ACTGCTGTAGGTATATGTTT+GGG + chr1_2:42256318-42256337 Msa0070960:intron 35.0%
GTACTTGAAATACATCTCTG+TGG - chr1_2:42256401-42256420 None:intergenic 35.0%
TTTCCAGCAAGAAAGATATG+GGG - chr1_2:42256523-42256542 None:intergenic 35.0%
ATCTTTCTTGCTGGAAAAAG+GGG + chr1_2:42256526-42256545 Msa0070960:three_prime_UTR 35.0%
GATATGAGCATTCTCTCATA+TGG + chr1_2:42256634-42256653 Msa0070960:three_prime_UTR 35.0%
GAATGAATGAATGAAGGAGC+GGG - chr1_2:42251606-42251625 None:intergenic 40.0%
GGAAAACGGGAATCAATTTC+CGG - chr1_2:42251767-42251786 None:intergenic 40.0%
!!! GATTGTTGGAAGGTTTTGAG+TGG + chr1_2:42252218-42252237 Msa0070960:five_prime_UTR 40.0%
!! TTTGAGTGGGTTTTGATCGA+TGG + chr1_2:42252232-42252251 Msa0070960:exon 40.0%
!! TGGGTTTTGATCGATGGATT+CGG + chr1_2:42252238-42252257 Msa0070960:exon 40.0%
TTTAACAAATCCCTCGGAGA+TGG - chr1_2:42252272-42252291 None:intergenic 40.0%
TTGTGGATGTAGTTGTTCCT+TGG + chr1_2:42252301-42252320 Msa0070960:CDS 40.0%
TTCAGAACATTGTTCCACCA+AGG - chr1_2:42252321-42252340 None:intergenic 40.0%
AATGGATGCGATCTGTTAAG+CGG + chr1_2:42252342-42252361 Msa0070960:CDS 40.0%
TAGTGAATTACCTGTGTCGT+CGG + chr1_2:42252388-42252407 Msa0070960:CDS 40.0%
ATGTGTTGTGTTACGTGAGA+TGG + chr1_2:42252436-42252455 Msa0070960:CDS 40.0%
TCAGGATTTGAATGAGGAGT+TGG + chr1_2:42252481-42252500 Msa0070960:CDS 40.0%
! AGGCAATGTCGATGATTTTG+AGG + chr1_2:42252540-42252559 Msa0070960:CDS 40.0%
!!! GATGATTTTGAGGTTGCAGA+GGG + chr1_2:42252550-42252569 Msa0070960:CDS 40.0%
TCAGGAGGAACTTATGTCTT+TGG + chr1_2:42252640-42252659 Msa0070960:CDS 40.0%
AAACTCCTAATGACCGTTTG+AGG + chr1_2:42252888-42252907 Msa0070960:CDS 40.0%
TATTCTCCAAGCTCCTCAAA+CGG - chr1_2:42252904-42252923 None:intergenic 40.0%
CAATAAAATCACCATCGACC+TGG - chr1_2:42252961-42252980 None:intergenic 40.0%
! CAGGTCGATGGTGATTTTAT+TGG + chr1_2:42252959-42252978 Msa0070960:CDS 40.0%
GGTGGGATGTGTAAAGAAAT+AGG + chr1_2:42253070-42253089 Msa0070960:CDS 40.0%
! GGATTATTTCTCTCAACCAG+AGG + chr1_2:42253141-42253160 Msa0070960:CDS 40.0%
GAACCTGTAAAGCCATTATC+CGG - chr1_2:42253259-42253278 None:intergenic 40.0%
ATCATCGAAAACTCCAGCTT+TGG - chr1_2:42253281-42253300 None:intergenic 40.0%
TGATTATGCAACCAGTCCAA+AGG + chr1_2:42253297-42253316 Msa0070960:CDS 40.0%
TGATGATTCCCTGATTCCTT+TGG - chr1_2:42253316-42253335 None:intergenic 40.0%
AATGAGCACAGATAAAGCAC+AGG + chr1_2:42253429-42253448 Msa0070960:CDS 40.0%
!!! CAGAGTATTTTTTGTGAGGG+GGG - chr1_2:42253889-42253908 None:intergenic 40.0%
TACTGTATGTGTGTGTGATC+TGG + chr1_2:42253912-42253931 Msa0070960:intron 40.0%
GTTACATGTGTTATCGATGG+CGG + chr1_2:42254157-42254176 Msa0070960:intron 40.0%
!! CTTTTGATTCAAGTGGCCTA+TGG + chr1_2:42254369-42254388 Msa0070960:intron 40.0%
ATGTTAGTCCAGTGCATGTT+GGG - chr1_2:42254569-42254588 None:intergenic 40.0%
AATGTTAGTCCAGTGCATGT+TGG - chr1_2:42254570-42254589 None:intergenic 40.0%
AGTTTCCTCTTTAACCCACT+TGG + chr1_2:42254622-42254641 Msa0070960:intron 40.0%
GTTTCCTCTTTAACCCACTT+GGG + chr1_2:42254623-42254642 Msa0070960:intron 40.0%
TCCTTCGTATCAATTTCGGT+GGG + chr1_2:42254711-42254730 Msa0070960:intron 40.0%
GGGAGTTCTTTAGTTGTTTG+TGG - chr1_2:42255361-42255380 None:intergenic 40.0%
TCATGCATCCAAAACAAAGC+AGG + chr1_2:42255473-42255492 Msa0070960:intron 40.0%
CATGCATCCAAAACAAAGCA+GGG + chr1_2:42255474-42255493 Msa0070960:intron 40.0%
TGTTGTAGTCACAGCTAATG+AGG + chr1_2:42255598-42255617 Msa0070960:intron 40.0%
TCTGTGACCCAGTTCATTAA+AGG - chr1_2:42255664-42255683 None:intergenic 40.0%
! CAGATATGTTTTCGTGGGTA+GGG - chr1_2:42255687-42255706 None:intergenic 40.0%
! TCAGATATGTTTTCGTGGGT+AGG - chr1_2:42255688-42255707 None:intergenic 40.0%
CGATCATACGATTCATACCA+TGG + chr1_2:42255846-42255865 Msa0070960:intron 40.0%
GACGTCATCAAACTGAACTT+CGG - chr1_2:42255976-42255995 None:intergenic 40.0%
CATGTACCGCATGATTTAGT+GGG - chr1_2:42256125-42256144 None:intergenic 40.0%
TCATGTACCGCATGATTTAG+TGG - chr1_2:42256126-42256145 None:intergenic 40.0%
GACTGCTGTAGGTATATGTT+TGG + chr1_2:42256317-42256336 Msa0070960:intron 40.0%
TGAGCATTCTCTCATATGGT+TGG + chr1_2:42256638-42256657 Msa0070960:three_prime_UTR 40.0%
! TCTCTCATATGGTTGGTTGT+TGG + chr1_2:42256645-42256664 Msa0070960:three_prime_UTR 40.0%
!! AGTTGAGTCAGGTTGAGAAT+AGG - chr1_2:42256728-42256747 None:intergenic 40.0%
TTCTCAACCTGACTCAACTA+AGG + chr1_2:42256729-42256748 Msa0070960:three_prime_UTR 40.0%
TCTCAACCTGACTCAACTAA+GGG + chr1_2:42256730-42256749 Msa0070960:three_prime_UTR 40.0%
ACAATACCCTTAGTTGAGTC+AGG - chr1_2:42256739-42256758 None:intergenic 40.0%
! ATGGTGTTTGGTGGGAACAA+TGG - chr1_2:42251582-42251601 None:intergenic 45.0%
AATGAATGAAGGAGCGGGAA+TGG - chr1_2:42251601-42251620 None:intergenic 45.0%
TCAACGAGCAGAAACCGAAA+TGG - chr1_2:42251859-42251878 None:intergenic 45.0%
!! TGTTGATTTGCTGGAGAAGG+TGG + chr1_2:42252066-42252085 Msa0070960:five_prime_UTR 45.0%
!! GTTGATTTGCTGGAGAAGGT+GGG + chr1_2:42252067-42252086 Msa0070960:five_prime_UTR 45.0%
GGAAAAAGTTCCATCTCCGA+GGG + chr1_2:42252259-42252278 Msa0070960:CDS 45.0%
TGGATGTAGTTGTTCCTTGG+TGG + chr1_2:42252304-42252323 Msa0070960:CDS 45.0%
TATGCAGCAGAGAACGATTC+AGG + chr1_2:42252463-42252482 Msa0070960:CDS 45.0%
GGATTTGAATGAGGAGTTGG+AGG + chr1_2:42252484-42252503 Msa0070960:CDS 45.0%
TTTGAATGAGGAGTTGGAGG+AGG + chr1_2:42252487-42252506 Msa0070960:CDS 45.0%
!!! CGATGATTTTGAGGTTGCAG+AGG + chr1_2:42252549-42252568 Msa0070960:CDS 45.0%
! TTTGAGGTTGCAGAGGGAAA+AGG + chr1_2:42252556-42252575 Msa0070960:CDS 45.0%
GGAAAAGGCGGAAGTTCAAA+TGG + chr1_2:42252571-42252590 Msa0070960:CDS 45.0%
GGAGAAAATGACGCATGATC+AGG + chr1_2:42252622-42252641 Msa0070960:CDS 45.0%
GAAAATGACGCATGATCAGG+AGG + chr1_2:42252625-42252644 Msa0070960:CDS 45.0%
!! AAAGGAGGGTATTCGTATGG+AGG - chr1_2:42252794-42252813 None:intergenic 45.0%
AAGCTCCTCAAACGGTCATT+AGG - chr1_2:42252896-42252915 None:intergenic 45.0%
TAATGACCGTTTGAGGAGCT+TGG + chr1_2:42252895-42252914 Msa0070960:CDS 45.0%
GTTTGAGGAGCTTGGAGAAT+AGG + chr1_2:42252903-42252922 Msa0070960:CDS 45.0%
! CAGAGGAAAATTTTCTCGCG+TGG - chr1_2:42253036-42253055 None:intergenic 45.0%
TGTTCTTGGGAGACTCTGTA+GGG - chr1_2:42253105-42253124 None:intergenic 45.0%
TTGTTCTTGGGAGACTCTGT+AGG - chr1_2:42253106-42253125 None:intergenic 45.0%
CAACCAGTCCAAAGGAATCA+GGG + chr1_2:42253305-42253324 Msa0070960:CDS 45.0%
ATTCCCTGATTCCTTTGGAC+TGG - chr1_2:42253311-42253330 None:intergenic 45.0%
GAAGCTTTACATGAGGCTTC+AGG + chr1_2:42253363-42253382 Msa0070960:CDS 45.0%
AGGCTGATAGGGAATCAATG+AGG + chr1_2:42253392-42253411 Msa0070960:CDS 45.0%
TGATAGGGAATCAATGAGGC+AGG + chr1_2:42253396-42253415 Msa0070960:CDS 45.0%
! AGCACAGGTTGTGTTACTGA+AGG + chr1_2:42253444-42253463 Msa0070960:CDS 45.0%
!! TGAACCTTTAGAGCGAGCAA+GGG - chr1_2:42253804-42253823 None:intergenic 45.0%
TAAGCCACCATAAAACGCCA+TGG + chr1_2:42254201-42254220 Msa0070960:intron 45.0%
CACTGCCATCCTTTACAAAC+TGG + chr1_2:42254224-42254243 Msa0070960:intron 45.0%
CATGGCCAGTTTGTAAAGGA+TGG - chr1_2:42254232-42254251 None:intergenic 45.0%
CATCCTTTACAAACTGGCCA+TGG + chr1_2:42254230-42254249 Msa0070960:intron 45.0%
! ATAAAGCACCCAACATGCAC+TGG + chr1_2:42254558-42254577 Msa0070960:intron 45.0%
GAATCGAACCTAAGACCTTG+AGG - chr1_2:42254691-42254710 None:intergenic 45.0%
CTCCTTCGTATCAATTTCGG+TGG + chr1_2:42254710-42254729 Msa0070960:intron 45.0%
! ATGTTGCCGGTGTTAGAAAG+AGG - chr1_2:42254770-42254789 None:intergenic 45.0%
TCGAAGGCCATATGCTTTGA+TGG - chr1_2:42254919-42254938 None:intergenic 45.0%
TGAGATCCTGCACAGTATTG+AGG + chr1_2:42255115-42255134 Msa0070960:intron 45.0%
! ATCCTGCACAGTATTGAGGA+GGG + chr1_2:42255119-42255138 Msa0070960:intron 45.0%
!! TATGGCATTGGCTGGAATTG+GGG - chr1_2:42255787-42255806 None:intergenic 45.0%
!! GTATGGCATTGGCTGGAATT+GGG - chr1_2:42255788-42255807 None:intergenic 45.0%
!! TGTATGGCATTGGCTGGAAT+TGG - chr1_2:42255789-42255808 None:intergenic 45.0%
ATCGGTCCCACTAAATCATG+CGG + chr1_2:42256116-42256135 Msa0070960:intron 45.0%
GTCGCAAGCATTTCAGATGA+TGG - chr1_2:42256300-42256319 None:intergenic 45.0%
TCACTTCTGCACTGAAGTTG+TGG - chr1_2:42256812-42256831 None:intergenic 45.0%
!!! TTTTTTTTTTGTTTTTTTTT+TGG - chr1_2:42251464-42251483 None:intergenic 5.0%
!!! GATTTTTAATTTTTTTTATT+GGG - chr1_2:42251493-42251512 None:intergenic 5.0%
!!! TGATTTTTAATTTTTTTTAT+TGG - chr1_2:42251494-42251513 None:intergenic 5.0%
!! AAAAATTAAAAATCAAATTA+AGG + chr1_2:42251499-42251518 Msa0070960:five_prime_UTR 5.0%
! TTGATTCCCGTTTTCCGCTC+CGG + chr1_2:42251771-42251790 Msa0070960:five_prime_UTR 50.0%
TAGGGGAAGGGAATTGTCGA+TGG + chr1_2:42252101-42252120 Msa0070960:five_prime_UTR 50.0%
GGAAGGGAATTGTCGATGGT+TGG + chr1_2:42252105-42252124 Msa0070960:five_prime_UTR 50.0%
CGGAAAAAGTTCCATCTCCG+AGG + chr1_2:42252258-42252277 Msa0070960:CDS 50.0%
GTCGCTTACGTGTGAAGTTC+AGG + chr1_2:42252697-42252716 Msa0070960:CDS 50.0%
!!! GATGAGTTTTGGGTACACCG+AGG + chr1_2:42252736-42252755 Msa0070960:CDS 50.0%
!! TTTTGGGTACACCGAGGATG+AGG + chr1_2:42252742-42252761 Msa0070960:CDS 50.0%
ATCACCTTCGACCTCATCCT+CGG - chr1_2:42252756-42252775 None:intergenic 50.0%
GAAAACTCCCACTTACAGCC+AGG + chr1_2:42252940-42252959 Msa0070960:CDS 50.0%
! CTCGCGTGGCTTGTCAAATT+TGG - chr1_2:42253022-42253041 None:intergenic 50.0%
TCCTCTGACTCAGCAACGTT+CGG + chr1_2:42253049-42253068 Msa0070960:CDS 50.0%
! GCACCGGATAATGGCTTTAC+AGG + chr1_2:42253253-42253272 Msa0070960:CDS 50.0%
GGCTTTACAGGTTCCAAAGC+TGG + chr1_2:42253265-42253284 Msa0070960:CDS 50.0%
GCAACCAGTCCAAAGGAATC+AGG + chr1_2:42253304-42253323 Msa0070960:CDS 50.0%
TTCAGGCACTTGAGGCTGAT+AGG + chr1_2:42253380-42253399 Msa0070960:CDS 50.0%
TCAGGCACTTGAGGCTGATA+GGG + chr1_2:42253381-42253400 Msa0070960:CDS 50.0%
!! GACAAGTACCGAGATCTTGC+AGG - chr1_2:42253529-42253548 None:intergenic 50.0%
ATCTCCCTTGCTCGCTCTAA+AGG + chr1_2:42253797-42253816 Msa0070960:intron 50.0%
!! CTGAACCTTTAGAGCGAGCA+AGG - chr1_2:42253805-42253824 None:intergenic 50.0%
GGGGGAAGATCAGTATCCAA+AGG - chr1_2:42253871-42253890 None:intergenic 50.0%
! AGTGCCATGGCGTTTTATGG+TGG - chr1_2:42254208-42254227 None:intergenic 50.0%
TGTAAAGGATGGCAGTGCCA+TGG - chr1_2:42254221-42254240 None:intergenic 50.0%
GTGCTGTCAAATATCGGCCA+TGG - chr1_2:42254250-42254269 None:intergenic 50.0%
!! CCAACCCAAGTGGGTTAAAG+AGG - chr1_2:42254630-42254649 None:intergenic 50.0%
CCTCTTTAACCCACTTGGGT+TGG + chr1_2:42254627-42254646 Msa0070960:intron 50.0%
!! TTAACCCACTTGGGTTGGTC+CGG + chr1_2:42254632-42254651 Msa0070960:intron 50.0%
! TTGAGGAGGAGCACACTACA+AGG - chr1_2:42254674-42254693 None:intergenic 50.0%
TTGTAGTGTGCTCCTCCTCA+AGG + chr1_2:42254673-42254692 Msa0070960:intron 50.0%
TCGAACCTAAGACCTTGAGG+AGG - chr1_2:42254688-42254707 None:intergenic 50.0%
GCCCACCGAAATTGATACGA+AGG - chr1_2:42254715-42254734 None:intergenic 50.0%
! GATCCTGCACAGTATTGAGG+AGG + chr1_2:42255118-42255137 Msa0070960:intron 50.0%
! TCCTGCACAGTATTGAGGAG+GGG + chr1_2:42255120-42255139 Msa0070960:intron 50.0%
! AGTATTGAGGAGGGGTCACA+AGG + chr1_2:42255128-42255147 Msa0070960:intron 50.0%
GGGTCACAAGGTCGTGAATT+GGG + chr1_2:42255140-42255159 Msa0070960:intron 50.0%
ACCGCTCCCATGATTTATCG+CGG + chr1_2:42255746-42255765 Msa0070960:intron 50.0%
GGATCCCCGCGATAAATCAT+GGG - chr1_2:42255755-42255774 None:intergenic 50.0%
!! ATGGCATTGGCTGGAATTGG+GGG - chr1_2:42255786-42255805 None:intergenic 50.0%
!! TGTTCGTGTATGGCATTGGC+TGG - chr1_2:42255795-42255814 None:intergenic 50.0%
GGTGTGTTCGTGTATGGCAT+TGG - chr1_2:42255799-42255818 None:intergenic 50.0%
TGCCATACACGAACACACCA+AGG + chr1_2:42255800-42255819 Msa0070960:intron 50.0%
GCCATACACGAACACACCAA+GGG + chr1_2:42255801-42255820 Msa0070960:intron 50.0%
CCATACACGAACACACCAAG+GGG + chr1_2:42255802-42255821 Msa0070960:intron 50.0%
GAAATGCTTGCGACTGCTGT+AGG + chr1_2:42256306-42256325 Msa0070960:intron 50.0%
CCAGCAAGAAAGATATGGGG+AGG - chr1_2:42256520-42256539 None:intergenic 50.0%
CCTCCCCATATCTTTCTTGC+TGG + chr1_2:42256517-42256536 Msa0070960:three_prime_UTR 50.0%
GAGCGGGAATGGTGTTTGGT+GGG - chr1_2:42251590-42251609 None:intergenic 55.0%
GAAGGAGCGGGAATGGTGTT+TGG - chr1_2:42251594-42251613 None:intergenic 55.0%
AGACGCCGTCGGAGAATCAA+CGG - chr1_2:42251816-42251835 None:intergenic 55.0%
AACCTTGAAGGAGACGCCGT+CGG - chr1_2:42251827-42251846 None:intergenic 55.0%
!! GATTTGCTGGAGAAGGTGGG+TGG + chr1_2:42252070-42252089 Msa0070960:five_prime_UTR 55.0%
TGCTTCCACAGCTGCGAATG+AGG + chr1_2:42252520-42252539 Msa0070960:CDS 55.0%
CATTGCCTCATTCGCAGCTG+TGG - chr1_2:42252528-42252547 None:intergenic 55.0%
GAGGTTGCAGAGGGAAAAGG+CGG + chr1_2:42252559-42252578 Msa0070960:CDS 55.0%
TACACCGAGGATGAGGTCGA+AGG + chr1_2:42252749-42252768 Msa0070960:CDS 55.0%
CCATCGACCTGGCTGTAAGT+GGG - chr1_2:42252950-42252969 None:intergenic 55.0%
ACCATCGACCTGGCTGTAAG+TGG - chr1_2:42252951-42252970 None:intergenic 55.0%
ACCGAACGTTGCTGAGTCAG+AGG - chr1_2:42253053-42253072 None:intergenic 55.0%
TCTGACTCAGCAACGTTCGG+TGG + chr1_2:42253052-42253071 Msa0070960:CDS 55.0%
CTGACTCAGCAACGTTCGGT+GGG + chr1_2:42253053-42253072 Msa0070960:CDS 55.0%
GGGAGACTCTGTAGGGAACT+CGG - chr1_2:42253098-42253117 None:intergenic 55.0%
!! CTCTGTTCATTCTGGGGCAC+CGG + chr1_2:42253237-42253256 Msa0070960:CDS 55.0%
!! CATTCTGGGGCACCGGATAA+TGG + chr1_2:42253244-42253263 Msa0070960:CDS 55.0%
CATGAGGCTTCAGGCACTTG+AGG + chr1_2:42253372-42253391 Msa0070960:CDS 55.0%
CGAGCAAGCCTGCAAGATCT+CGG + chr1_2:42253518-42253537 Msa0070960:CDS 55.0%
! GGCAGTGCCATGGCGTTTTA+TGG - chr1_2:42254211-42254230 None:intergenic 55.0%
CGGCCATGGCCAGTTTGTAA+AGG - chr1_2:42254236-42254255 None:intergenic 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG + chr1_2:42254680-42254699 Msa0070960:intron 55.0%
ACCCCTCCTCAATACTGTGC+AGG - chr1_2:42255124-42255143 None:intergenic 55.0%
GGGGTCACAAGGTCGTGAAT+TGG + chr1_2:42255139-42255158 Msa0070960:intron 55.0%
GCGATAAATCATGGGAGCGG+TGG - chr1_2:42255747-42255766 None:intergenic 55.0%
CCCGCGATAAATCATGGGAG+CGG - chr1_2:42255750-42255769 None:intergenic 55.0%
CCGCTCCCATGATTTATCGC+GGG + chr1_2:42255747-42255766 Msa0070960:intron 55.0%
CGCTCCCATGATTTATCGCG+GGG + chr1_2:42255748-42255767 Msa0070960:intron 55.0%
GGGATCCCCGCGATAAATCA+TGG - chr1_2:42255756-42255775 None:intergenic 55.0%
! CCCCTTGGTGTGTTCGTGTA+TGG - chr1_2:42255805-42255824 None:intergenic 55.0%
TACACGAACACACCAAGGGG+TGG + chr1_2:42255805-42255824 Msa0070960:intron 55.0%
TTTACGGTCTTGCCACCCCT+TGG - chr1_2:42255820-42255839 None:intergenic 55.0%
TGGGCTACCAGCTGACAGTA+TGG + chr1_2:42256337-42256356 Msa0070960:CDS 55.0%
GGGCTACCAGCTGACAGTAT+GGG + chr1_2:42256338-42256357 Msa0070960:CDS 55.0%
AGCAAGCCCATACTGTCAGC+TGG - chr1_2:42256347-42256366 None:intergenic 55.0%
GGAGCGGGAATGGTGTTTGG+TGG - chr1_2:42251591-42251610 None:intergenic 60.0%
AAGGTCGCCGGAGCGGAAAA+CGG - chr1_2:42251781-42251800 None:intergenic 60.0%
GTCGGAGAATCAACGGCAGC+CGG - chr1_2:42251809-42251828 None:intergenic 60.0%
!! GGCTGCCGTTGATTCTCCGA+CGG + chr1_2:42251808-42251827 Msa0070960:five_prime_UTR 60.0%
AAGGTGGGTGGCGTGAAGGT+AGG + chr1_2:42252082-42252101 Msa0070960:five_prime_UTR 60.0%
AGGTGGGTGGCGTGAAGGTA+GGG + chr1_2:42252083-42252102 Msa0070960:five_prime_UTR 60.0%
GTGGCGTGAAGGTAGGGGAA+GGG + chr1_2:42252089-42252108 Msa0070960:five_prime_UTR 60.0%
! TACCTGTGTCGTCGGTTGCG+CGG + chr1_2:42252396-42252415 Msa0070960:CDS 60.0%
CCCACTTACAGCCAGGTCGA+TGG + chr1_2:42252947-42252966 Msa0070960:CDS 60.0%
ACCTCCGGACCAACCCAAGT+GGG - chr1_2:42254639-42254658 None:intergenic 60.0%
!! TTGGGTTGGTCCGGAGGTGT+TGG + chr1_2:42254641-42254660 Msa0070960:intron 60.0%
!! TTGGTCCGGAGGTGTTGGCT+TGG + chr1_2:42254646-42254665 Msa0070960:intron 60.0%
!! TGGTCCGGAGGTGTTGGCTT+GGG + chr1_2:42254647-42254666 Msa0070960:intron 60.0%
AGGACCCAAGCCAACACCTC+CGG - chr1_2:42254654-42254673 None:intergenic 60.0%
! CTGGAATTGGGGGTGCAGCT+GGG - chr1_2:42255776-42255795 None:intergenic 60.0%
AGGTCGCCGGAGCGGAAAAC+GGG - chr1_2:42251780-42251799 None:intergenic 65.0%
GGAGAATCAACGGCAGCCGG+CGG - chr1_2:42251806-42251825 None:intergenic 65.0%
CTCCGACGGCGTCTCCTTCA+AGG + chr1_2:42251822-42251841 Msa0070960:five_prime_UTR 65.0%
GGAGAAGGTGGGTGGCGTGA+AGG + chr1_2:42252078-42252097 Msa0070960:five_prime_UTR 65.0%
GGTGGGTGGCGTGAAGGTAG+GGG + chr1_2:42252084-42252103 Msa0070960:five_prime_UTR 65.0%
GGTGGCGTGAAGGTAGGGGA+AGG + chr1_2:42252088-42252107 Msa0070960:five_prime_UTR 65.0%
! ACCTGTGTCGTCGGTTGCGC+GGG + chr1_2:42252397-42252416 Msa0070960:CDS 65.0%
!! ACCCACTTGGGTTGGTCCGG+AGG + chr1_2:42254635-42254654 Msa0070960:intron 65.0%
CACCTCCGGACCAACCCAAG+TGG - chr1_2:42254640-42254659 None:intergenic 65.0%
! GCTGGAATTGGGGGTGCAGC+TGG - chr1_2:42255777-42255796 None:intergenic 65.0%
ACCCGCGCAACCGACGACAC+AGG - chr1_2:42252401-42252420 None:intergenic 70.0%
TCAACGGCAGCCGGCGGCGA+AGG - chr1_2:42251800-42251819 None:intergenic 75.0%
! GGCGGCGAAGGTCGCCGGAG+CGG - chr1_2:42251788-42251807 None:intergenic 80.0%
! GCTCCGGCGACCTTCGCCGC+CGG + chr1_2:42251787-42251806 Msa0070960:five_prime_UTR 80.0%
! CAGCCGGCGGCGAAGGTCGC+CGG - chr1_2:42251793-42251812 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 42251453 42256887 42251453 ID=Msa0070960;Name=Msa0070960
chr1_2 mRNA 42251453 42256887 42251453 ID=Msa0070960-mRNA-1;Parent=Msa0070960;Name=Msa0070960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=594|1|1|1|0|0|4|451|487
chr1_2 exon 42251453 42251843 42251453 ID=Msa0070960-mRNA-1:exon:12841;Parent=Msa0070960-mRNA-1
chr1_2 exon 42252048 42253558 42252048 ID=Msa0070960-mRNA-1:exon:12842;Parent=Msa0070960-mRNA-1
chr1_2 exon 42254043 42254089 42254043 ID=Msa0070960-mRNA-1:exon:12843;Parent=Msa0070960-mRNA-1
chr1_2 exon 42256328 42256887 42256328 ID=Msa0070960-mRNA-1:exon:12844;Parent=Msa0070960-mRNA-1
chr1_2 five_prime_UTR 42251453 42251843 42251453 ID=Msa0070960-mRNA-1:five_prime_utr;Parent=Msa0070960-mRNA-1
chr1_2 five_prime_UTR 42252048 42252250 42252048 ID=Msa0070960-mRNA-1:five_prime_utr;Parent=Msa0070960-mRNA-1
chr1_2 CDS 42252251 42253558 42252251 ID=Msa0070960-mRNA-1:cds;Parent=Msa0070960-mRNA-1
chr1_2 CDS 42254043 42254089 42254043 ID=Msa0070960-mRNA-1:cds;Parent=Msa0070960-mRNA-1
chr1_2 CDS 42256328 42256436 42256328 ID=Msa0070960-mRNA-1:cds;Parent=Msa0070960-mRNA-1
chr1_2 three_prime_UTR 42256437 42256887 42256437 ID=Msa0070960-mRNA-1:three_prime_utr;Parent=Msa0070960-mRNA-1
Gene Sequence

>Msa0070960

ATGGATTCGGAAAAAGTTCCATCTCCGAGGGATTTGTTAAAATGTTGTGATTGTGGATGTAGTTGTTCCTTGGTGGAACAATGTTCTGAAAAATGGATGCGATCTGTTAAGCGGAAGCACGATGAGTTTAAATTGGATAGTGAATTACCTGTGTCGTCGGTTGCGCGGGTTGATATTATGAATGAATGTGTTGTGTTACGTGAGATGGTAAGTATGCAGCAGAGAACGATTCAGGATTTGAATGAGGAGTTGGAGGAGGAGAGAAATTCTGCTTCCACAGCTGCGAATGAGGCAATGTCGATGATTTTGAGGTTGCAGAGGGAAAAGGCGGAAGTTCAAATGGAAGCTCGTCAATTTAAGCGTTTTGCAGAGGAGAAAATGACGCATGATCAGGAGGAACTTATGTCTTTGGAAGATTTGTTGTACAAGAGAGAACAGATAATTCAGTCGCTTACGTGTGAAGTTCAGGCTTATAAACACAGGATGATGAGTTTTGGGTACACCGAGGATGAGGTCGAAGGTGATCAATATGATGATATTCCTCCATACGAATACCCTCCTTTAAAATGTAATGTCATGTATAATGGCATGGATGCTGATAATGACGACACTGATATTGAGAAATATGCATTTGGTGAAACTCCTAATGACCGTTTGAGGAGCTTGGAGAATAGGATTTCTCAAATGGAGAAAACTCCCACTTACAGCCAGGTCGATGGTGATTTTATTGGAAAAAATGTTACGGAGAAAGTTATTGTTGGACAATCTCCAAATTTGACAAGCCACGCGAGAAAATTTTCCTCTGACTCAGCAACGTTCGGTGGGATGTGTAAAGAAATAGGTTCCGAGTTCCCTACAGAGTCTCCCAAGAACAATAACAAGTATAAGAAGGATTATTTCTCTCAACCAGAGGACAATTCGAATTTGAAGAAGGTAGATAATGCTTCAGAAGGTGATGATACGAGTGACAGAATTTATACAATTGACTCTGTTCATTCTGGGGCACCGGATAATGGCTTTACAGGTTCCAAAGCTGGAGTTTTCGATGATTATGCAACCAGTCCAAAGGAATCAGGGAATCATCATGCTGATTTCGAAGATCCCTACATTAAGAAGCTTTACATGAGGCTTCAGGCACTTGAGGCTGATAGGGAATCAATGAGGCAGGCAATCATTTCAATGAGCACAGATAAAGCACAGGTTGTGTTACTGAAGGAAATAGCTCAGCATTTGTGCAAAGAGATGTCACCGCAAAGAAAAATGAGTACGAGCAAGCCTGCAAGATCTCGGTACTTGTCAATTTTTAAGTGGATCACATCAATTGTTTTTTGGAGAAACAAAGCTCACCAAAGCAAGTATATGTTTGGGCTACCAGCTGACAGTATGGGCTTGCTACTGCTCCTTGACAAAAGAACAAATGCAAGGCCACAGAGATGTATTTCAAGTACACAAGTGGGAGATTAA
Protein sequence

>Msa0070960

MDSEKVPSPRDLLKCCDCGCSCSLVEQCSEKWMRSVKRKHDEFKLDSELPVSSVARVDIMNECVVLREMVSMQQRTIQDLNEELEEERNSASTAANEAMSMILRLQREKAEVQMEARQFKRFAEEKMTHDQEELMSLEDLLYKREQIIQSLTCEVQAYKHRMMSFGYTEDEVEGDQYDDIPPYEYPPLKCNVMYNGMDADNDDTDIEKYAFGETPNDRLRSLENRISQMEKTPTYSQVDGDFIGKNVTEKVIVGQSPNLTSHARKFSSDSATFGGMCKEIGSEFPTESPKNNNKYKKDYFSQPEDNSNLKKVDNASEGDDTSDRIYTIDSVHSGAPDNGFTGSKAGVFDDYATSPKESGNHHADFEDPYIKKLYMRLQALEADRESMRQAIISMSTDKAQVVLLKEIAQHLCKEMSPQRKMSTSKPARSRYLSIFKWITSIVFWRNKAHQSKYMFGLPADSMGLLLLLDKRTNARPQRCISSTQVGD*