Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363070 | XP_027356244.1 | 72.727 | 110 | 27 | 1 | 1 | 110 | 1 | 107 | 3.76e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363070 | sp|Q9LUV2|POP3_ARATH | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.56e-44 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363070 | A0A151TDN5 | 67.857 | 112 | 33 | 1 | 1 | 112 | 1 | 109 | 3.47e-48 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa1363070 | 0.846240 | 2.459867e-59 | -8.615850e-47 |
| Msa0012380 | Msa1363070 | 0.831857 | 1.315834e-55 | -8.615850e-47 |
| Msa0027030 | Msa1363070 | 0.801950 | 7.068713e-49 | -8.615850e-47 |
| Msa0037270 | Msa1363070 | 0.812906 | 3.348964e-51 | -8.615850e-47 |
| Msa0072390 | Msa1363070 | 0.826789 | 2.236838e-54 | -8.615850e-47 |
| Msa0080810 | Msa1363070 | 0.841041 | 6.042161e-58 | -8.615850e-47 |
| Msa0081120 | Msa1363070 | 0.827873 | 1.230010e-54 | -8.615850e-47 |
| Msa0091090 | Msa1363070 | 0.807400 | 5.148878e-50 | -8.615850e-47 |
| Msa0091470 | Msa1363070 | 0.802041 | 6.772157e-49 | -8.615850e-47 |
| Msa0116470 | Msa1363070 | 0.812141 | 4.922035e-51 | -8.615850e-47 |
| Msa0116510 | Msa1363070 | 0.830356 | 3.075934e-55 | -8.615850e-47 |
| Msa0120320 | Msa1363070 | 0.826407 | 2.759609e-54 | -8.615850e-47 |
| Msa1350580 | Msa1363070 | 0.806475 | 8.079378e-50 | -8.615850e-47 |
| Msa1359890 | Msa1363070 | 0.807284 | 5.448410e-50 | -8.615850e-47 |
| Msa1363070 | Msa1369180 | 0.819709 | 1.007463e-52 | -8.615850e-47 |
| Msa1363070 | Msa1371300 | -0.802697 | 4.960498e-49 | -8.615850e-47 |
| Msa1363070 | Msa1373390 | 0.814043 | 1.883140e-51 | -8.615850e-47 |
| Msa1363070 | Msa1382750 | 0.829318 | 5.506110e-55 | -8.615850e-47 |
| Msa1363070 | Msa1384620 | 0.804821 | 1.796649e-49 | -8.615850e-47 |
| Msa1363070 | Msa1404690 | 0.831389 | 1.716638e-55 | -8.615850e-47 |
| Msa1363070 | Msa1450630 | 0.807901 | 4.029396e-50 | -8.615850e-47 |
| Msa1363070 | Msa1450780 | 0.843118 | 1.705702e-58 | -8.615850e-47 |
| Msa1363070 | Msa1456620 | 0.814677 | 1.364316e-51 | -8.615850e-47 |
| Msa1363070 | Msa1460530 | 0.808581 | 2.887026e-50 | -8.615850e-47 |
| Msa0608780 | Msa1363070 | 0.828152 | 1.053732e-54 | -8.615850e-47 |
| Msa0610780 | Msa1363070 | 0.844201 | 8.754426e-59 | -8.615850e-47 |
| Msa0610810 | Msa1363070 | 0.824143 | 9.468768e-54 | -8.615850e-47 |
| Msa0615430 | Msa1363070 | 0.803405 | 3.541963e-49 | -8.615850e-47 |
| Msa0619390 | Msa1363070 | 0.815424 | 9.310257e-52 | -8.615850e-47 |
| Msa0634260 | Msa1363070 | 0.806627 | 7.505264e-50 | -8.615850e-47 |
| Msa0645410 | Msa1363070 | 0.810837 | 9.448857e-51 | -8.615850e-47 |
| Msa0646190 | Msa1363070 | 0.806424 | 8.283482e-50 | -8.615850e-47 |
| Msa0649250 | Msa1363070 | 0.824304 | 8.677996e-54 | -8.615850e-47 |
| Msa0651310 | Msa1363070 | 0.841790 | 3.836917e-58 | -8.615850e-47 |
| Msa0654880 | Msa1363070 | 0.804594 | 2.004089e-49 | -8.615850e-47 |
| Msa0693400 | Msa1363070 | 0.829284 | 5.611507e-55 | -8.615850e-47 |
| Msa0693500 | Msa1363070 | 0.826712 | 2.333887e-54 | -8.615850e-47 |
| Msa0698650 | Msa1363070 | 0.805481 | 1.307655e-49 | -8.615850e-47 |
| Msa0702360 | Msa1363070 | 0.803458 | 3.452555e-49 | -8.615850e-47 |
| Msa0702560 | Msa1363070 | 0.811385 | 7.190033e-51 | -8.615850e-47 |
| Msa0705810 | Msa1363070 | 0.829775 | 4.263374e-55 | -8.615850e-47 |
| Msa0742090 | Msa1363070 | 0.821975 | 3.033863e-53 | -8.615850e-47 |
| Msa0748980 | Msa1363070 | 0.802641 | 5.095632e-49 | -8.615850e-47 |
| Msa0749150 | Msa1363070 | 0.815806 | 7.653190e-52 | -8.615850e-47 |
| Msa0803530 | Msa1363070 | 0.848809 | 4.835990e-60 | -8.615850e-47 |
| Msa0823310 | Msa1363070 | 0.847418 | 1.171074e-59 | -8.615850e-47 |
| Msa0825520 | Msa1363070 | 0.805471 | 1.314049e-49 | -8.615850e-47 |
| Msa0147540 | Msa1363070 | 0.813678 | 2.266592e-51 | -8.615850e-47 |
| Msa0163960 | Msa1363070 | 0.823373 | 1.434113e-53 | -8.615850e-47 |
| Msa0173370 | Msa1363070 | 0.826680 | 2.375623e-54 | -8.615850e-47 |
| Msa0180100 | Msa1363070 | 0.864034 | 1.625673e-64 | -8.615850e-47 |
| Msa0184510 | Msa1363070 | 0.876482 | 1.347793e-68 | -8.615850e-47 |
| Msa0187980 | Msa1363070 | 0.865062 | 7.755597e-65 | -8.615850e-47 |
| Msa0207680 | Msa1363070 | -0.813920 | 2.004698e-51 | -8.615850e-47 |
| Msa1228460 | Msa1363070 | 0.809830 | 1.558908e-50 | -8.615850e-47 |
| Msa1236860 | Msa1363070 | 0.881710 | 1.913536e-70 | -8.615850e-47 |
| Msa1243630 | Msa1363070 | 0.810803 | 9.609758e-51 | -8.615850e-47 |
| Msa1244220 | Msa1363070 | 0.811372 | 7.236834e-51 | -8.615850e-47 |
| Msa1255020 | Msa1363070 | 0.861111 | 1.290850e-63 | -8.615850e-47 |
| Msa1295470 | Msa1363070 | 0.860921 | 1.473937e-63 | -8.615850e-47 |
| Msa1297220 | Msa1363070 | 0.827433 | 1.568365e-54 | -8.615850e-47 |
| Msa1303760 | Msa1363070 | 0.971970 | 5.224374e-134 | -8.615850e-47 |
| Msa1303820 | Msa1363070 | 0.964301 | 3.734343e-123 | -8.615850e-47 |
| Msa1317240 | Msa1363070 | 0.870637 | 1.255768e-66 | -8.615850e-47 |
| Msa1323260 | Msa1363070 | 0.826818 | 2.201102e-54 | -8.615850e-47 |
| Msa1332690 | Msa1363070 | 0.815771 | 7.791885e-52 | -8.615850e-47 |
| Msa1333210 | Msa1363070 | -0.811723 | 6.070884e-51 | -8.615850e-47 |
| Msa1343450 | Msa1363070 | 0.837850 | 4.073867e-57 | -8.615850e-47 |
| Msa0367590 | Msa1363070 | 0.805917 | 1.058950e-49 | -8.615850e-47 |
| Msa0375570 | Msa1363070 | 0.800196 | 1.614231e-48 | -8.615850e-47 |
| Msa0378310 | Msa1363070 | 0.826437 | 2.714104e-54 | -8.615850e-47 |
| Msa0404060 | Msa1363070 | 0.851114 | 1.095841e-60 | -8.615850e-47 |
| Msa0404070 | Msa1363070 | 0.841097 | 5.841303e-58 | -8.615850e-47 |
| Msa0425320 | Msa1363070 | 0.841999 | 3.379798e-58 | -8.615850e-47 |
| Msa0428330 | Msa1363070 | 0.812415 | 4.289281e-51 | -8.615850e-47 |
| Msa0432970 | Msa1363070 | -0.803768 | 2.977558e-49 | -8.615850e-47 |
| Msa0437790 | Msa1363070 | 0.806162 | 9.405284e-50 | -8.615850e-47 |
| Msa0468360 | Msa1363070 | 0.828806 | 7.324780e-55 | -8.615850e-47 |
| Msa0471760 | Msa1363070 | 0.829039 | 6.434764e-55 | -8.615850e-47 |
| Msa0477030 | Msa1363070 | -0.802762 | 4.808945e-49 | -8.615850e-47 |
| Msa1014700 | Msa1363070 | 0.817198 | 3.734522e-52 | -8.615850e-47 |
| Msa1031530 | Msa1363070 | 0.812486 | 4.139282e-51 | -8.615850e-47 |
| Msa1032740 | Msa1363070 | -0.803087 | 4.120386e-49 | -8.615850e-47 |
| Msa1070630 | Msa1363070 | 0.802446 | 5.589153e-49 | -8.615850e-47 |
| Msa1071640 | Msa1363070 | 0.842201 | 2.988397e-58 | -8.615850e-47 |
| Msa1078600 | Msa1363070 | 0.813938 | 1.986787e-51 | -8.615850e-47 |
| Msa1078770 | Msa1363070 | 0.810652 | 1.036495e-50 | -8.615850e-47 |
| Msa0240590 | Msa1363070 | 0.804512 | 2.084413e-49 | -8.615850e-47 |
| Msa0303920 | Msa1363070 | -0.805313 | 1.418067e-49 | -8.615850e-47 |
| Msa0304060 | Msa1363070 | 0.800024 | 1.749658e-48 | -8.615850e-47 |
| Msa0316610 | Msa1363070 | 0.808168 | 3.535966e-50 | -8.615850e-47 |
| Msa1117510 | Msa1363070 | 0.839644 | 1.401058e-57 | -8.615850e-47 |
| Msa1158450 | Msa1363070 | 0.813959 | 1.965488e-51 | -8.615850e-47 |
| Msa1161210 | Msa1363070 | 0.832232 | 1.062993e-55 | -8.615850e-47 |
| Msa1169600 | Msa1363070 | 0.804162 | 2.465514e-49 | -8.615850e-47 |
| Msa1173380 | Msa1363070 | 0.824930 | 6.181406e-54 | -8.615850e-47 |
| Msa1190350 | Msa1363070 | 0.813016 | 3.168330e-51 | -8.615850e-47 |
| Msa1209160 | Msa1363070 | 0.973413 | 2.189501e-136 | -8.615850e-47 |
| Msa1219060 | Msa1363070 | 0.820025 | 8.531068e-53 | -8.615850e-47 |
| Msa0508780 | Msa1363070 | 0.810464 | 1.137811e-50 | -8.615850e-47 |
| Msa0515460 | Msa1363070 | 0.831718 | 1.423931e-55 | -8.615850e-47 |
| Msa0524830 | Msa1363070 | 0.808471 | 3.047220e-50 | -8.615850e-47 |
| Msa0530340 | Msa1363070 | 0.823689 | 1.210013e-53 | -8.615850e-47 |
| Msa0549540 | Msa1363070 | 0.801177 | 1.018306e-48 | -8.615850e-47 |
| Msa0556070 | Msa1363070 | 0.850088 | 2.128317e-60 | -8.615850e-47 |
| Msa0565860 | Msa1363070 | 0.803487 | 3.405861e-49 | -8.615850e-47 |
| Msa0570680 | Msa1363070 | 0.823532 | 1.316987e-53 | -8.615850e-47 |
| Msa0576180 | Msa1363070 | -0.805413 | 1.351255e-49 | -8.615850e-47 |
| Msa0577050 | Msa1363070 | 0.840089 | 1.072483e-57 | -8.615850e-47 |
| Msa0579230 | Msa1363070 | 0.804547 | 2.049575e-49 | -8.615850e-47 |
| Msa0862230 | Msa1363070 | 0.800371 | 1.487340e-48 | -8.615850e-47 |
| Msa0864730 | Msa1363070 | 0.811921 | 5.496583e-51 | -8.615850e-47 |
| Msa0864750 | Msa1363070 | 0.813156 | 2.951784e-51 | -8.615850e-47 |
| Msa0879650 | Msa1363070 | 0.865773 | 4.629423e-65 | -8.615850e-47 |
| Msa0887100 | Msa1363070 | 0.886724 | 2.665198e-72 | -8.615850e-47 |
| Msa0892020 | Msa1363070 | 0.837250 | 5.808729e-57 | -8.615850e-47 |
| Msa0909720 | Msa1363070 | 0.818188 | 2.233005e-52 | -8.615850e-47 |
| Msa0913140 | Msa1363070 | 0.876247 | 1.625659e-68 | -8.615850e-47 |
| Msa0925630 | Msa1363070 | 0.806687 | 7.289600e-50 | -8.615850e-47 |
| Msa0928940 | Msa1363070 | 0.814452 | 1.529778e-51 | -8.615850e-47 |
| Msa0930210 | Msa1363070 | -0.812694 | 3.727046e-51 | -8.615850e-47 |
| Msa0950470 | Msa1363070 | 0.860147 | 2.529241e-63 | -8.615850e-47 |
| Msa0950570 | Msa1363070 | 0.865759 | 4.675915e-65 | -8.615850e-47 |
| Msa0956910 | Msa1363070 | 0.843401 | 1.433411e-58 | -8.615850e-47 |
| Msa0975440 | Msa1363070 | 0.801956 | 7.050687e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363070 | MtrunA17_Chr4g0070211 | 75.000 | 72 | 15 | 1 | 8 | 79 | 3 | 71 | 2.03e-30 | 103 |
| Msa1363070 | MtrunA17_Chr2g0321051 | 36.893 | 103 | 60 | 2 | 9 | 111 | 8 | 105 | 1.39e-14 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1363070 | AT3G17210.1 | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.60e-45 | 142 |
| Msa1363070 | AT3G17210.2 | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.60e-45 | 142 |
| Msa1363070 | AT5G22580.1 | 34.021 | 97 | 59 | 2 | 9 | 105 | 7 | 98 | 8.53e-15 | 65.5 |
Find 30 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTCCTCAATCTTCTCT+TGG | 0.329948 | tig0018025:-113359 | None:intergenic |
| CAAAGTGAAAGAGGAGGAAA+TGG | 0.338863 | tig0018025:+113278 | Msa1363070:exon |
| GATTCAGGTAACAAATAATA+AGG | 0.348275 | tig0018025:-113677 | None:intergenic |
| AATGAGTAAATCCTTGATTC+AGG | 0.352373 | tig0018025:-113692 | None:intergenic |
| AGGAGGGAGCAAAGTGAAAG+AGG | 0.406040 | tig0018025:+113269 | Msa1363070:five_prime_UTR |
| TTACCAATGGAATGACTTCA+TGG | 0.420824 | tig0018025:-113418 | None:intergenic |
| ATTATTTGTTACCTGAATCA+AGG | 0.432767 | tig0018025:+113681 | Msa1363070:CDS |
| AAAGTTGCTCGTTCCTTGCT+TGG | 0.439365 | tig0018025:+113788 | Msa1363070:CDS |
| GAGTTCCTCAATCTTCTCTT+GGG | 0.443255 | tig0018025:-113358 | None:intergenic |
| GTAGTGAAGAACATAGTGAT+TGG | 0.457715 | tig0018025:+113315 | Msa1363070:CDS |
| AGTGAAAGAGGAGGAAATGG+AGG | 0.502250 | tig0018025:+113281 | Msa1363070:exon |
| GAGGAAATGGAGGAAGCAAA+AGG | 0.502851 | tig0018025:+113291 | Msa1363070:exon |
| TGGGATGAGATTGACGAGAT+TGG | 0.516286 | tig0018025:-113394 | None:intergenic |
| ATTCAAAGGTTAACGATGGT+GGG | 0.545431 | tig0018025:-113837 | None:intergenic |
| TCCTTGCTTGGAGAAAGTGC+TGG | 0.548785 | tig0018025:+113800 | Msa1363070:CDS |
| CACCCATGAAGTCATTCCAT+TGG | 0.553232 | tig0018025:+113415 | Msa1363070:CDS |
| TGAATCAACATTTGAGAGTG+TGG | 0.555452 | tig0018025:+113719 | Msa1363070:CDS |
| TTTGCATACTCAACATGAGC+AGG | 0.558557 | tig0018025:-113768 | None:intergenic |
| GAAGATTGAGGAACTCATCA+AGG | 0.571882 | tig0018025:+113365 | Msa1363070:CDS |
| GCCAGCACTTTCTCCAAGCA+AGG | 0.576667 | tig0018025:-113801 | None:intergenic |
| GATTCAAAGGTTAACGATGG+TGG | 0.578082 | tig0018025:-113838 | None:intergenic |
| GAGATTGACGAGATTGGCAA+AGG | 0.580515 | tig0018025:-113388 | None:intergenic |
| AGGGAGCAAAGTGAAAGAGG+AGG | 0.582719 | tig0018025:+113272 | Msa1363070:five_prime_UTR |
| CAATGGAATGACTTCATGGG+TGG | 0.583790 | tig0018025:-113414 | None:intergenic |
| AATCTCCCAAGAGAAGATTG+AGG | 0.597731 | tig0018025:+113353 | Msa1363070:CDS |
| ATGAGCTACATACTCTGCAA+TGG | 0.614733 | tig0018025:-113745 | None:intergenic |
| TACCAATGGAATGACTTCAT+GGG | 0.631729 | tig0018025:-113417 | None:intergenic |
| AAGAAACACTGCAATGCACG+AGG | 0.694375 | tig0018025:+113218 | None:intergenic |
| AATGGAATGACTTCATGGGT+GGG | 0.706119 | tig0018025:-113413 | None:intergenic |
| ACGGATTCAAAGGTTAACGA+TGG | 0.711712 | tig0018025:-113841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAGTTTTTTAAGTTT+TGG | - | tig0018025:113520-113539 | None:intergenic | 10.0% |
| !!! | TATACATGTCTTATTTTTTT+AGG | + | tig0018025:113637-113656 | Msa1363070:intron | 15.0% |
| !!! | TTGTAGTATACAGCTATTTT+AGG | + | tig0018025:113249-113268 | Msa1363070:five_prime_UTR | 25.0% |
| !! | TTTAAGTTTCATCTTACCAA+TGG | - | tig0018025:113434-113453 | None:intergenic | 25.0% |
| ! | GATTCAGGTAACAAATAATA+AGG | - | tig0018025:113680-113699 | None:intergenic | 25.0% |
| !! | ATTATTTGTTACCTGAATCA+AGG | + | tig0018025:113681-113700 | Msa1363070:CDS | 25.0% |
| !! | TAGTATACAGCTATTTTAGG+AGG | + | tig0018025:113252-113271 | Msa1363070:five_prime_UTR | 30.0% |
| !! | AGTATACAGCTATTTTAGGA+GGG | + | tig0018025:113253-113272 | Msa1363070:five_prime_UTR | 30.0% |
| AATGAGTAAATCCTTGATTC+AGG | - | tig0018025:113695-113714 | None:intergenic | 30.0% | |
| GTAGTGAAGAACATAGTGAT+TGG | + | tig0018025:113315-113334 | Msa1363070:CDS | 35.0% | |
| TACCAATGGAATGACTTCAT+GGG | - | tig0018025:113420-113439 | None:intergenic | 35.0% | |
| TTACCAATGGAATGACTTCA+TGG | - | tig0018025:113421-113440 | None:intergenic | 35.0% | |
| !! | ATAGTCTAGACTGCTTTTGT+CGG | - | tig0018025:113470-113489 | None:intergenic | 35.0% |
| TGAATCAACATTTGAGAGTG+TGG | + | tig0018025:113719-113738 | Msa1363070:CDS | 35.0% | |
| CAAAGTGAAAGAGGAGGAAA+TGG | + | tig0018025:113278-113297 | Msa1363070:exon | 40.0% | |
| AATCTCCCAAGAGAAGATTG+AGG | + | tig0018025:113353-113372 | Msa1363070:CDS | 40.0% | |
| GAGTTCCTCAATCTTCTCTT+GGG | - | tig0018025:113361-113380 | None:intergenic | 40.0% | |
| TGAGTTCCTCAATCTTCTCT+TGG | - | tig0018025:113362-113381 | None:intergenic | 40.0% | |
| GAAGATTGAGGAACTCATCA+AGG | + | tig0018025:113365-113384 | Msa1363070:CDS | 40.0% | |
| AATGGAATGACTTCATGGGT+GGG | - | tig0018025:113416-113435 | None:intergenic | 40.0% | |
| ATGAGCTACATACTCTGCAA+TGG | - | tig0018025:113748-113767 | None:intergenic | 40.0% | |
| TTTGCATACTCAACATGAGC+AGG | - | tig0018025:113771-113790 | None:intergenic | 40.0% | |
| AGTGAAAGAGGAGGAAATGG+AGG | + | tig0018025:113281-113300 | Msa1363070:exon | 45.0% | |
| GAGGAAATGGAGGAAGCAAA+AGG | + | tig0018025:113291-113310 | Msa1363070:exon | 45.0% | |
| GAGATTGACGAGATTGGCAA+AGG | - | tig0018025:113391-113410 | None:intergenic | 45.0% | |
| TGGGATGAGATTGACGAGAT+TGG | - | tig0018025:113397-113416 | None:intergenic | 45.0% | |
| CAATGGAATGACTTCATGGG+TGG | - | tig0018025:113417-113436 | None:intergenic | 45.0% | |
| CACCCATGAAGTCATTCCAT+TGG | + | tig0018025:113415-113434 | Msa1363070:CDS | 45.0% | |
| ! | GATTTTCGCTAAGTGGACGA+GGG | - | tig0018025:113556-113575 | None:intergenic | 45.0% |
| ! | TACCAGCGATTTTCGCTAAG+TGG | - | tig0018025:113563-113582 | None:intergenic | 45.0% |
| AAAGTTGCTCGTTCCTTGCT+TGG | + | tig0018025:113788-113807 | Msa1363070:CDS | 45.0% | |
| AGGAGGGAGCAAAGTGAAAG+AGG | + | tig0018025:113269-113288 | Msa1363070:five_prime_UTR | 50.0% | |
| AGGGAGCAAAGTGAAAGAGG+AGG | + | tig0018025:113272-113291 | Msa1363070:five_prime_UTR | 50.0% | |
| ! | CGATTTTCGCTAAGTGGACG+AGG | - | tig0018025:113557-113576 | None:intergenic | 50.0% |
| GTCCACTTAGCGAAAATCGC+TGG | + | tig0018025:113558-113577 | Msa1363070:intron | 50.0% | |
| ! | TCCTTGCTTGGAGAAAGTGC+TGG | + | tig0018025:113800-113819 | Msa1363070:CDS | 50.0% |
| GCCAGCACTTTCTCCAAGCA+AGG | - | tig0018025:113804-113823 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018025 | gene | 113226 | 113857 | 113226 | ID=Msa1363070;Name=Msa1363070 |
| tig0018025 | mRNA | 113226 | 113857 | 113226 | ID=Msa1363070-mRNA-1;Parent=Msa1363070;Name=Msa1363070-mRNA-1;_AED=0.36;_eAED=0.37;_QI=71|0|0.5|1|1|1|2|0|112 |
| tig0018025 | exon | 113226 | 113436 | 113226 | ID=Msa1363070-mRNA-1:exon:13406;Parent=Msa1363070-mRNA-1 |
| tig0018025 | exon | 113659 | 113857 | 113659 | ID=Msa1363070-mRNA-1:exon:13407;Parent=Msa1363070-mRNA-1 |
| tig0018025 | five_prime_UTR | 113226 | 113296 | 113226 | ID=Msa1363070-mRNA-1:five_prime_utr;Parent=Msa1363070-mRNA-1 |
| tig0018025 | CDS | 113297 | 113436 | 113297 | ID=Msa1363070-mRNA-1:cds;Parent=Msa1363070-mRNA-1 |
| tig0018025 | CDS | 113659 | 113857 | 113659 | ID=Msa1363070-mRNA-1:cds;Parent=Msa1363070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
