Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209160 | XP_027356244.1 | 72.727 | 110 | 27 | 1 | 1 | 110 | 1 | 107 | 3.76e-49 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209160 | sp|Q9LUV2|POP3_ARATH | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.56e-44 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa1209160 | 0.853151 | 2.888233e-61 | -8.615850e-47 |
| Msa0012380 | Msa1209160 | 0.833526 | 5.070263e-56 | -8.615850e-47 |
| Msa0037270 | Msa1209160 | 0.809551 | 1.789589e-50 | -8.615850e-47 |
| Msa0072390 | Msa1209160 | 0.829217 | 5.824780e-55 | -8.615850e-47 |
| Msa0080810 | Msa1209160 | 0.839751 | 1.314017e-57 | -8.615850e-47 |
| Msa0081120 | Msa1209160 | 0.827168 | 1.816159e-54 | -8.615850e-47 |
| Msa0091090 | Msa1209160 | 0.801096 | 1.058059e-48 | -8.615850e-47 |
| Msa0091470 | Msa1209160 | 0.809021 | 2.324463e-50 | -8.615850e-47 |
| Msa0116470 | Msa1209160 | 0.817679 | 2.909338e-52 | -8.615850e-47 |
| Msa0116510 | Msa1209160 | 0.835087 | 2.058202e-56 | -8.615850e-47 |
| Msa0120320 | Msa1209160 | 0.821744 | 3.431572e-53 | -8.615850e-47 |
| Msa0604880 | Msa1209160 | 0.801875 | 7.324734e-49 | -8.615850e-47 |
| Msa0608780 | Msa1209160 | 0.826359 | 2.833520e-54 | -8.615850e-47 |
| Msa0610780 | Msa1209160 | 0.854862 | 9.274473e-62 | -8.615850e-47 |
| Msa0610810 | Msa1209160 | 0.846223 | 2.486435e-59 | -8.615850e-47 |
| Msa0615430 | Msa1209160 | 0.807954 | 3.926574e-50 | -8.615850e-47 |
| Msa0619390 | Msa1209160 | 0.813730 | 2.207957e-51 | -8.615850e-47 |
| Msa0634260 | Msa1209160 | 0.804775 | 1.837629e-49 | -8.615850e-47 |
| Msa0645410 | Msa1209160 | 0.817278 | 3.583025e-52 | -8.615850e-47 |
| Msa0646190 | Msa1209160 | 0.816834 | 4.507816e-52 | -8.615850e-47 |
| Msa0649250 | Msa1209160 | 0.827041 | 1.947167e-54 | -8.615850e-47 |
| Msa0651310 | Msa1209160 | 0.853588 | 2.164318e-61 | -8.615850e-47 |
| Msa0654880 | Msa1209160 | 0.812405 | 4.310619e-51 | -8.615850e-47 |
| Msa0693400 | Msa1209160 | 0.825633 | 4.213999e-54 | -8.615850e-47 |
| Msa0693500 | Msa1209160 | 0.840201 | 1.003087e-57 | -8.615850e-47 |
| Msa0698650 | Msa1209160 | 0.811315 | 7.443654e-51 | -8.615850e-47 |
| Msa0702360 | Msa1209160 | 0.806583 | 7.666822e-50 | -8.615850e-47 |
| Msa0702560 | Msa1209160 | 0.814301 | 1.651530e-51 | -8.615850e-47 |
| Msa0705810 | Msa1209160 | 0.836222 | 1.062012e-56 | -8.615850e-47 |
| Msa0742090 | Msa1209160 | 0.825816 | 3.812608e-54 | -8.615850e-47 |
| Msa0748980 | Msa1209160 | 0.805226 | 1.478289e-49 | -8.615850e-47 |
| Msa0749150 | Msa1209160 | 0.821365 | 4.198006e-53 | -8.615850e-47 |
| Msa0793100 | Msa1209160 | 0.800686 | 1.283017e-48 | -8.615850e-47 |
| Msa0803530 | Msa1209160 | 0.863096 | 3.177616e-64 | -8.615850e-47 |
| Msa0823310 | Msa1209160 | 0.837437 | 5.201198e-57 | -8.615850e-47 |
| Msa0825520 | Msa1209160 | 0.809734 | 1.634437e-50 | -8.615850e-47 |
| Msa0828900 | Msa1209160 | 0.800174 | 1.630938e-48 | -8.615850e-47 |
| Msa0135330 | Msa1209160 | -0.801925 | 7.154099e-49 | -8.615850e-47 |
| Msa0143280 | Msa1209160 | 0.800825 | 1.201653e-48 | -8.615850e-47 |
| Msa0147540 | Msa1209160 | 0.820755 | 5.799081e-53 | -8.615850e-47 |
| Msa0163960 | Msa1209160 | 0.829039 | 6.431317e-55 | -8.615850e-47 |
| Msa0173370 | Msa1209160 | 0.825256 | 5.174835e-54 | -8.615850e-47 |
| Msa0180100 | Msa1209160 | 0.859796 | 3.227497e-63 | -8.615850e-47 |
| Msa0184510 | Msa1209160 | 0.874592 | 5.989173e-68 | -8.615850e-47 |
| Msa0187980 | Msa1209160 | 0.870396 | 1.506440e-66 | -8.615850e-47 |
| Msa0207680 | Msa1209160 | -0.814771 | 1.299978e-51 | -8.615850e-47 |
| Msa0378310 | Msa1209160 | 0.820502 | 6.629772e-53 | -8.615850e-47 |
| Msa0404060 | Msa1209160 | 0.854887 | 9.125709e-62 | -8.615850e-47 |
| Msa0404070 | Msa1209160 | 0.842339 | 2.747690e-58 | -8.615850e-47 |
| Msa0425320 | Msa1209160 | 0.835465 | 1.652108e-56 | -8.615850e-47 |
| Msa0428330 | Msa1209160 | 0.821076 | 4.892687e-53 | -8.615850e-47 |
| Msa0437790 | Msa1209160 | 0.804929 | 1.706395e-49 | -8.615850e-47 |
| Msa0468360 | Msa1209160 | 0.818049 | 2.400849e-52 | -8.615850e-47 |
| Msa0471760 | Msa1209160 | 0.823085 | 1.674827e-53 | -8.615850e-47 |
| Msa0477030 | Msa1209160 | -0.801848 | 7.417603e-49 | -8.615850e-47 |
| Msa1004720 | Msa1209160 | 0.810448 | 1.146816e-50 | -8.615850e-47 |
| Msa1014700 | Msa1209160 | 0.806842 | 6.759168e-50 | -8.615850e-47 |
| Msa1031530 | Msa1209160 | 0.815360 | 9.619923e-52 | -8.615850e-47 |
| Msa1042130 | Msa1209160 | -0.812871 | 3.408054e-51 | -8.615850e-47 |
| Msa1071640 | Msa1209160 | 0.837137 | 6.206637e-57 | -8.615850e-47 |
| Msa1078600 | Msa1209160 | 0.814381 | 1.586287e-51 | -8.615850e-47 |
| Msa1078770 | Msa1209160 | 0.809888 | 1.514058e-50 | -8.615850e-47 |
| Msa0238860 | Msa1209160 | 0.813259 | 2.802676e-51 | -8.615850e-47 |
| Msa0240590 | Msa1209160 | 0.807796 | 4.242583e-50 | -8.615850e-47 |
| Msa0303920 | Msa1209160 | -0.804611 | 1.988059e-49 | -8.615850e-47 |
| Msa0316610 | Msa1209160 | 0.816112 | 6.539823e-52 | -8.615850e-47 |
| Msa1117510 | Msa1209160 | 0.840153 | 1.032134e-57 | -8.615850e-47 |
| Msa1124880 | Msa1209160 | -0.803560 | 3.288000e-49 | -8.615850e-47 |
| Msa1143860 | Msa1209160 | 0.800767 | 1.234643e-48 | -8.615850e-47 |
| Msa1158450 | Msa1209160 | 0.810313 | 1.226697e-50 | -8.615850e-47 |
| Msa1161210 | Msa1209160 | 0.834084 | 3.676223e-56 | -8.615850e-47 |
| Msa1169600 | Msa1209160 | 0.801835 | 7.464288e-49 | -8.615850e-47 |
| Msa1173380 | Msa1209160 | 0.826207 | 3.079275e-54 | -8.615850e-47 |
| Msa1184010 | Msa1209160 | 0.806873 | 6.656940e-50 | -8.615850e-47 |
| Msa1190350 | Msa1209160 | 0.808002 | 3.835244e-50 | -8.615850e-47 |
| Msa1209160 | Msa1219060 | 0.827750 | 1.316393e-54 | -8.615850e-47 |
| Msa1209160 | Msa1224820 | 0.804260 | 2.353065e-49 | -8.615850e-47 |
| Msa1209160 | Msa1225140 | 0.800825 | 1.201697e-48 | -8.615850e-47 |
| Msa1209160 | Msa1228460 | 0.820534 | 6.520754e-53 | -8.615850e-47 |
| Msa1209160 | Msa1236860 | 0.879423 | 1.261470e-69 | -8.615850e-47 |
| Msa1209160 | Msa1237970 | 0.813479 | 2.506536e-51 | -8.615850e-47 |
| Msa1209160 | Msa1243630 | 0.806719 | 7.174802e-50 | -8.615850e-47 |
| Msa1209160 | Msa1244220 | 0.807844 | 4.143842e-50 | -8.615850e-47 |
| Msa1209160 | Msa1255020 | 0.871600 | 6.039714e-67 | -8.615850e-47 |
| Msa1209160 | Msa1295470 | 0.870546 | 1.344976e-66 | -8.615850e-47 |
| Msa1209160 | Msa1297220 | 0.830220 | 3.319526e-55 | -8.615850e-47 |
| Msa1209160 | Msa1303760 | 0.975525 | 4.100829e-140 | -8.615850e-47 |
| Msa1209160 | Msa1303820 | 0.970276 | 2.262955e-131 | -8.615850e-47 |
| Msa1209160 | Msa1317240 | 0.871851 | 4.986944e-67 | -8.615850e-47 |
| Msa1209160 | Msa1323260 | 0.825014 | 5.905687e-54 | -8.615850e-47 |
| Msa1209160 | Msa1332690 | 0.810936 | 8.994837e-51 | -8.615850e-47 |
| Msa1209160 | Msa1333210 | -0.810420 | 1.162780e-50 | -8.615850e-47 |
| Msa1209160 | Msa1343450 | 0.837715 | 4.414345e-57 | -8.615850e-47 |
| Msa1209160 | Msa1359890 | 0.811023 | 8.612664e-51 | -8.615850e-47 |
| Msa1209160 | Msa1363070 | 0.973413 | 2.189501e-136 | -8.615850e-47 |
| Msa1209160 | Msa1369180 | 0.823254 | 1.529233e-53 | -8.615850e-47 |
| Msa1209160 | Msa1373390 | 0.815741 | 7.915055e-52 | -8.615850e-47 |
| Msa1209160 | Msa1376010 | 0.800525 | 1.383270e-48 | -8.615850e-47 |
| Msa1209160 | Msa1382750 | 0.830228 | 3.305401e-55 | -8.615850e-47 |
| Msa1209160 | Msa1384620 | 0.809555 | 1.786236e-50 | -8.615850e-47 |
| Msa1209160 | Msa1404690 | 0.824867 | 6.395544e-54 | -8.615850e-47 |
| Msa1209160 | Msa1405380 | 0.802874 | 4.560313e-49 | -8.615850e-47 |
| Msa1209160 | Msa1450630 | 0.807088 | 5.994654e-50 | -8.615850e-47 |
| Msa1209160 | Msa1450780 | 0.847357 | 1.216870e-59 | -8.615850e-47 |
| Msa1209160 | Msa1456620 | 0.821227 | 4.517341e-53 | -8.615850e-47 |
| Msa1209160 | Msa1460530 | 0.810513 | 1.110637e-50 | -8.615850e-47 |
| Msa0508780 | Msa1209160 | 0.819544 | 1.098760e-52 | -8.615850e-47 |
| Msa0515460 | Msa1209160 | 0.824690 | 7.040471e-54 | -8.615850e-47 |
| Msa0524830 | Msa1209160 | 0.801365 | 9.319973e-49 | -8.615850e-47 |
| Msa0530340 | Msa1209160 | 0.823327 | 1.470670e-53 | -8.615850e-47 |
| Msa0545230 | Msa1209160 | 0.805831 | 1.104118e-49 | -8.615850e-47 |
| Msa0549110 | Msa1209160 | 0.804897 | 1.732814e-49 | -8.615850e-47 |
| Msa0549540 | Msa1209160 | 0.808478 | 3.036843e-50 | -8.615850e-47 |
| Msa0556070 | Msa1209160 | 0.845060 | 5.139719e-59 | -8.615850e-47 |
| Msa0561420 | Msa1209160 | 0.804028 | 2.629105e-49 | -8.615850e-47 |
| Msa0565860 | Msa1209160 | 0.805061 | 1.600658e-49 | -8.615850e-47 |
| Msa0569230 | Msa1209160 | 0.800357 | 1.496761e-48 | -8.615850e-47 |
| Msa0570680 | Msa1209160 | 0.840982 | 6.262073e-58 | -8.615850e-47 |
| Msa0575380 | Msa1209160 | -0.807717 | 4.411004e-50 | -8.615850e-47 |
| Msa0576180 | Msa1209160 | -0.807421 | 5.096489e-50 | -8.615850e-47 |
| Msa0577050 | Msa1209160 | 0.836345 | 9.878779e-57 | -8.615850e-47 |
| Msa0579170 | Msa1209160 | 0.805901 | 1.066945e-49 | -8.615850e-47 |
| Msa0579230 | Msa1209160 | 0.818941 | 1.506846e-52 | -8.615850e-47 |
| Msa0587250 | Msa1209160 | 0.805028 | 1.626328e-49 | -8.615850e-47 |
| Msa0864730 | Msa1209160 | 0.815970 | 7.037883e-52 | -8.615850e-47 |
| Msa0864750 | Msa1209160 | 0.817632 | 2.982236e-52 | -8.615850e-47 |
| Msa0879650 | Msa1209160 | 0.869819 | 2.325671e-66 | -8.615850e-47 |
| Msa0887100 | Msa1209160 | 0.902490 | 9.196217e-79 | -8.615850e-47 |
| Msa0892020 | Msa1209160 | 0.844335 | 8.058861e-59 | -8.615850e-47 |
| Msa0909720 | Msa1209160 | 0.823524 | 1.322677e-53 | -8.615850e-47 |
| Msa0913140 | Msa1209160 | 0.884086 | 2.588187e-71 | -8.615850e-47 |
| Msa0928940 | Msa1209160 | 0.821272 | 4.410903e-53 | -8.615850e-47 |
| Msa0930210 | Msa1209160 | -0.824049 | 9.961193e-54 | -8.615850e-47 |
| Msa0950470 | Msa1209160 | 0.864822 | 9.220893e-65 | -8.615850e-47 |
| Msa0950570 | Msa1209160 | 0.875332 | 3.348555e-68 | -8.615850e-47 |
| Msa0956910 | Msa1209160 | 0.863957 | 1.717016e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209160 | MtrunA17_Chr4g0070211 | 75.000 | 72 | 15 | 1 | 8 | 79 | 3 | 71 | 2.03e-30 | 103 |
| Msa1209160 | MtrunA17_Chr2g0321051 | 36.893 | 103 | 60 | 2 | 9 | 111 | 8 | 105 | 1.39e-14 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1209160 | AT3G17210.1 | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.60e-45 | 142 |
| Msa1209160 | AT3G17210.2 | 62.500 | 112 | 39 | 1 | 1 | 112 | 1 | 109 | 2.60e-45 | 142 |
| Msa1209160 | AT5G22580.1 | 34.021 | 97 | 59 | 2 | 9 | 105 | 7 | 98 | 8.53e-15 | 65.5 |
Find 30 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTCCTCAATCTTCTCT+TGG | 0.329948 | 8_1:+67584466 | None:intergenic |
| CAAAGTGAAAGAGGAGGAAA+TGG | 0.338863 | 8_1:-67584547 | Msa1209160:exon |
| GATTCAGGTAACAAATAATA+AGG | 0.348275 | 8_1:+67584148 | None:intergenic |
| AATGAGTAAATCCTTGATTC+AGG | 0.352373 | 8_1:+67584133 | None:intergenic |
| AGGAGGGAGCAAAGTGAAAG+AGG | 0.406040 | 8_1:-67584556 | Msa1209160:five_prime_UTR |
| TTACCAATGGAATGACTTCA+TGG | 0.420824 | 8_1:+67584407 | None:intergenic |
| ATTATTTGTTACCTGAATCA+AGG | 0.432767 | 8_1:-67584144 | Msa1209160:CDS |
| AAAGTTGCTCGTTCCTTGCT+TGG | 0.439365 | 8_1:-67584037 | Msa1209160:CDS |
| GAGTTCCTCAATCTTCTCTT+GGG | 0.443255 | 8_1:+67584467 | None:intergenic |
| GTAGTGAAGAACATAGTGAT+TGG | 0.457715 | 8_1:-67584510 | Msa1209160:CDS |
| AGTGAAAGAGGAGGAAATGG+AGG | 0.502250 | 8_1:-67584544 | Msa1209160:exon |
| GAGGAAATGGAGGAAGCAAA+AGG | 0.502851 | 8_1:-67584534 | Msa1209160:exon |
| TGGGATGAGATTGACGAGAT+TGG | 0.516286 | 8_1:+67584431 | None:intergenic |
| ATTCAAAGGTTAACGATGGT+GGG | 0.545431 | 8_1:+67583988 | None:intergenic |
| TCCTTGCTTGGAGAAAGTGC+TGG | 0.548785 | 8_1:-67584025 | Msa1209160:CDS |
| CACCCATGAAGTCATTCCAT+TGG | 0.553232 | 8_1:-67584410 | Msa1209160:intron |
| TGAATCAACATTTGAGAGTG+TGG | 0.555452 | 8_1:-67584106 | Msa1209160:CDS |
| TTTGCATACTCAACATGAGC+AGG | 0.558557 | 8_1:+67584057 | None:intergenic |
| GAAGATTGAGGAACTCATCA+AGG | 0.571882 | 8_1:-67584460 | Msa1209160:CDS |
| GCCAGCACTTTCTCCAAGCA+AGG | 0.576667 | 8_1:+67584024 | None:intergenic |
| GATTCAAAGGTTAACGATGG+TGG | 0.578082 | 8_1:+67583987 | None:intergenic |
| GAGATTGACGAGATTGGCAA+AGG | 0.580515 | 8_1:+67584437 | None:intergenic |
| AGGGAGCAAAGTGAAAGAGG+AGG | 0.582719 | 8_1:-67584553 | Msa1209160:five_prime_UTR |
| CAATGGAATGACTTCATGGG+TGG | 0.583790 | 8_1:+67584411 | None:intergenic |
| AATCTCCCAAGAGAAGATTG+AGG | 0.597731 | 8_1:-67584472 | Msa1209160:CDS |
| ATGAGCTACATACTCTGCAA+TGG | 0.614733 | 8_1:+67584080 | None:intergenic |
| TACCAATGGAATGACTTCAT+GGG | 0.631729 | 8_1:+67584408 | None:intergenic |
| AAGAAACACTGCAATGCACG+AGG | 0.694375 | 8_1:-67584607 | None:intergenic |
| AATGGAATGACTTCATGGGT+GGG | 0.706119 | 8_1:+67584412 | None:intergenic |
| ACGGATTCAAAGGTTAACGA+TGG | 0.711712 | 8_1:+67583984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAGTTTTTTAAGTTT+TGG | + | chr8_1:67584284-67584303 | None:intergenic | 10.0% |
| !!! | TATACATGTCTTATTTTTTT+AGG | - | chr8_1:67584401-67584420 | Msa1209160:intron | 15.0% |
| !!! | TTGTAGTATACAGCTATTTT+AGG | - | chr8_1:67584013-67584032 | Msa1209160:CDS | 25.0% |
| !! | TTTAAGTTTCATCTTACCAA+TGG | + | chr8_1:67584198-67584217 | None:intergenic | 25.0% |
| ! | GATTCAGGTAACAAATAATA+AGG | + | chr8_1:67584444-67584463 | None:intergenic | 25.0% |
| !! | ATTATTTGTTACCTGAATCA+AGG | - | chr8_1:67584445-67584464 | Msa1209160:CDS | 25.0% |
| !! | TAGTATACAGCTATTTTAGG+AGG | - | chr8_1:67584016-67584035 | Msa1209160:CDS | 30.0% |
| !! | AGTATACAGCTATTTTAGGA+GGG | - | chr8_1:67584017-67584036 | Msa1209160:CDS | 30.0% |
| AATGAGTAAATCCTTGATTC+AGG | + | chr8_1:67584459-67584478 | None:intergenic | 30.0% | |
| GTAGTGAAGAACATAGTGAT+TGG | - | chr8_1:67584079-67584098 | Msa1209160:CDS | 35.0% | |
| TACCAATGGAATGACTTCAT+GGG | + | chr8_1:67584184-67584203 | None:intergenic | 35.0% | |
| TTACCAATGGAATGACTTCA+TGG | + | chr8_1:67584185-67584204 | None:intergenic | 35.0% | |
| !! | ATAGTCTAGACTGCTTTTGT+CGG | + | chr8_1:67584234-67584253 | None:intergenic | 35.0% |
| TGAATCAACATTTGAGAGTG+TGG | - | chr8_1:67584483-67584502 | Msa1209160:CDS | 35.0% | |
| CAAAGTGAAAGAGGAGGAAA+TGG | - | chr8_1:67584042-67584061 | Msa1209160:CDS | 40.0% | |
| AATCTCCCAAGAGAAGATTG+AGG | - | chr8_1:67584117-67584136 | Msa1209160:CDS | 40.0% | |
| GAGTTCCTCAATCTTCTCTT+GGG | + | chr8_1:67584125-67584144 | None:intergenic | 40.0% | |
| TGAGTTCCTCAATCTTCTCT+TGG | + | chr8_1:67584126-67584145 | None:intergenic | 40.0% | |
| GAAGATTGAGGAACTCATCA+AGG | - | chr8_1:67584129-67584148 | Msa1209160:CDS | 40.0% | |
| AATGGAATGACTTCATGGGT+GGG | + | chr8_1:67584180-67584199 | None:intergenic | 40.0% | |
| ATGAGCTACATACTCTGCAA+TGG | + | chr8_1:67584512-67584531 | None:intergenic | 40.0% | |
| TTTGCATACTCAACATGAGC+AGG | + | chr8_1:67584535-67584554 | None:intergenic | 40.0% | |
| AGTGAAAGAGGAGGAAATGG+AGG | - | chr8_1:67584045-67584064 | Msa1209160:CDS | 45.0% | |
| GAGGAAATGGAGGAAGCAAA+AGG | - | chr8_1:67584055-67584074 | Msa1209160:CDS | 45.0% | |
| GAGATTGACGAGATTGGCAA+AGG | + | chr8_1:67584155-67584174 | None:intergenic | 45.0% | |
| TGGGATGAGATTGACGAGAT+TGG | + | chr8_1:67584161-67584180 | None:intergenic | 45.0% | |
| CAATGGAATGACTTCATGGG+TGG | + | chr8_1:67584181-67584200 | None:intergenic | 45.0% | |
| CACCCATGAAGTCATTCCAT+TGG | - | chr8_1:67584179-67584198 | Msa1209160:intron | 45.0% | |
| ! | GATTTTCGCTAAGTGGACGA+GGG | + | chr8_1:67584320-67584339 | None:intergenic | 45.0% |
| ! | TACCAGCGATTTTCGCTAAG+TGG | + | chr8_1:67584327-67584346 | None:intergenic | 45.0% |
| AAAGTTGCTCGTTCCTTGCT+TGG | - | chr8_1:67584552-67584571 | Msa1209160:five_prime_UTR | 45.0% | |
| AGGAGGGAGCAAAGTGAAAG+AGG | - | chr8_1:67584033-67584052 | Msa1209160:CDS | 50.0% | |
| AGGGAGCAAAGTGAAAGAGG+AGG | - | chr8_1:67584036-67584055 | Msa1209160:CDS | 50.0% | |
| ! | CGATTTTCGCTAAGTGGACG+AGG | + | chr8_1:67584321-67584340 | None:intergenic | 50.0% |
| GTCCACTTAGCGAAAATCGC+TGG | - | chr8_1:67584322-67584341 | Msa1209160:intron | 50.0% | |
| ! | TCCTTGCTTGGAGAAAGTGC+TGG | - | chr8_1:67584564-67584583 | Msa1209160:five_prime_UTR | 50.0% |
| GCCAGCACTTTCTCCAAGCA+AGG | + | chr8_1:67584568-67584587 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 67583990 | 67584621 | 67583990 | ID=Msa1209160;Name=Msa1209160 |
| chr8_1 | mRNA | 67583990 | 67584621 | 67583990 | ID=Msa1209160-mRNA-1;Parent=Msa1209160;Name=Msa1209160-mRNA-1;_AED=0.36;_eAED=0.37;_QI=71|0|0.5|1|1|1|2|0|112 |
| chr8_1 | exon | 67583990 | 67584188 | 67583990 | ID=Msa1209160-mRNA-1:exon:22362;Parent=Msa1209160-mRNA-1 |
| chr8_1 | exon | 67584411 | 67584621 | 67584411 | ID=Msa1209160-mRNA-1:exon:22361;Parent=Msa1209160-mRNA-1 |
| chr8_1 | five_prime_UTR | 67584551 | 67584621 | 67584551 | ID=Msa1209160-mRNA-1:five_prime_utr;Parent=Msa1209160-mRNA-1 |
| chr8_1 | CDS | 67584411 | 67584550 | 67584411 | ID=Msa1209160-mRNA-1:cds;Parent=Msa1209160-mRNA-1 |
| chr8_1 | CDS | 67583990 | 67584188 | 67583990 | ID=Msa1209160-mRNA-1:cds;Parent=Msa1209160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
