AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101860 MtrunA17_Chr7g0231021 89.610 231 24 0 132 362 5 235 7.35e-148 417
Msa1101860 MtrunA17_Chr7g0231021 46.591 88 41 2 86 171 148 231 1.44e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 79 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATATGTCTAGTAATTA+TGG 0.172131 7_3:-32966143 Msa1101860:three_prime_UTR
ATAGGGTTTGTTATAAATTA+TGG 0.203465 7_3:-32966450 Msa1101860:CDS
TTAAGTGTTGCTTGTGAAAA+TGG 0.207804 7_3:+32966673 None:intergenic
ATTAACATTATTATTTGATT+TGG 0.212608 7_3:+32966348 None:intergenic
TTAACATTATTATTTGATTT+GGG 0.223719 7_3:+32966349 None:intergenic
TTCAATTATCACAACTATTA+TGG 0.224854 7_3:-32972298 Msa1101860:CDS
GGACGGTGGGCTGGTGGCGG+TGG 0.250889 7_3:-32973407 Msa1101860:CDS
GACAAATGTACCGAGAAATT+TGG 0.264070 7_3:+32966544 None:intergenic
ACCACCAAGCCGTTGGAATT+TGG 0.273685 7_3:+32971919 None:intergenic
ATTGTCTATCTTTAGAAGTT+AGG 0.281728 7_3:-32966474 Msa1101860:CDS
CGGTGGGCTGGTGGCGGTGG+AGG 0.283739 7_3:-32973404 Msa1101860:CDS
TGAATGACATAAACTTTAAT+TGG 0.288289 7_3:-32971975 Msa1101860:CDS
AAATAATAATGTTAATAATC+AGG 0.302551 7_3:-32966341 Msa1101860:CDS
TATCTTTAGAAGTTAGGTAT+AGG 0.311418 7_3:-32966468 Msa1101860:CDS
TGACGTTGTTGTTGGAATAT+TGG 0.325438 7_3:+32966911 None:intergenic
TCCTCCATTCCTTCACCATC+TGG 0.336136 7_3:+32973336 Msa1101870:CDS
CAAAGGTGAAATGTAAATTC+TGG 0.336209 7_3:+32966063 None:intergenic
GGCTGGTGGCGGTGGAGGAG+AGG 0.340235 7_3:-32973399 Msa1101860:CDS
AGAATAAAGTATGCCATGTT+TGG 0.346274 7_3:-32966261 Msa1101860:three_prime_UTR
TGGATTCTATATATATGTTA+TGG 0.350192 7_3:-32966299 Msa1101860:three_prime_UTR
AGGGTGACATAAAGTTTAAT+TGG 0.350901 7_3:-32966570 Msa1101860:CDS
TAGATTTAAAAGTTGAGTAT+AGG 0.356832 7_3:-32971873 Msa1101860:CDS
GAAGGACGGTGGGCTGGTGG+CGG 0.383239 7_3:-32973410 Msa1101860:CDS
AGATTTAAAAGTTGAGTATA+GGG 0.383243 7_3:-32971872 Msa1101860:intron
AGATTCAGTCTTGGTACGTT+TGG 0.383413 7_3:-32966608 Msa1101860:CDS
GGTGGCGGTGGAGGAGAGGG+TGG 0.392104 7_3:-32973395 Msa1101860:CDS
ATCTTTAGAAGTTAGGTATA+GGG 0.397217 7_3:-32966467 Msa1101860:CDS
ATGGAAGGACGGTGGGCTGG+TGG 0.404518 7_3:-32973413 Msa1101860:CDS
GTGATGGAAGGACGGTGGGC+TGG 0.426349 7_3:-32973416 Msa1101860:CDS
TTATCTATTTGAAAATCCTT+TGG 0.432958 7_3:-32966407 Msa1101860:CDS
ACTTCTAAAGATAGACAATC+TGG 0.436157 7_3:+32966478 None:intergenic
TCAGAATCATTAACAAGAAC+GGG 0.436509 7_3:+32972364 None:intergenic
GCTGGTGGCGGTGGAGGAGA+GGG 0.446578 7_3:-32973398 Msa1101860:CDS
GGCATAGAAAACATATCAAT+AGG 0.454438 7_3:-32972277 Msa1101860:intron
ACCAGGATCATCCTTTCTAA+TGG 0.461935 7_3:-32972392 Msa1101860:CDS
TGGAAGAAATCTATTAAACT+TGG 0.464368 7_3:-32966430 Msa1101860:CDS
GCGGTGGAGGAGAGGGTGGA+TGG 0.472693 7_3:-32973391 Msa1101860:CDS
ACCAAATTCCAACGGCTTGG+TGG 0.474093 7_3:-32971920 Msa1101860:CDS
CACAATTGATGATAGTGAAA+AGG 0.479164 7_3:-32966953 Msa1101860:CDS
AAAATTTGAAGATTCAGTCT+TGG 0.484593 7_3:-32966617 Msa1101860:CDS
TGGTGAAGGAATGGAGGAGG+AGG 0.497445 7_3:-32973331 Msa1101860:intron
TCATCAATTGTGTTCTCAGC+AGG 0.498222 7_3:+32966964 None:intergenic
TAATTGGTTTCCAAATTTCT+CGG 0.498589 7_3:-32966554 Msa1101860:CDS
AATAATAATGTTAATAATCA+GGG 0.501246 7_3:-32966340 Msa1101860:CDS
ATTTGAAAATCCTTTGGTAG+AGG 0.511453 7_3:-32966401 Msa1101860:CDS
AGTGATGGTGATGGTGGTGA+TGG 0.516134 7_3:-32973432 None:intergenic
GGTGGTGATGGAAGGACGGT+GGG 0.517102 7_3:-32973420 Msa1101860:CDS
TATGTCTAGTAATTATGGCT+TGG 0.517868 7_3:-32966138 Msa1101860:three_prime_UTR
CTCAGAATCATTAACAAGAA+CGG 0.519781 7_3:+32972363 None:intergenic
GGTTAAGTATATAAGATCAA+TGG 0.521069 7_3:-32966319 Msa1101860:exon
TGAAAATCCTTTGGTAGAGG+TGG 0.528555 7_3:-32966398 Msa1101860:CDS
TAACATTATTATTTGATTTG+GGG 0.535494 7_3:+32966350 None:intergenic
TGATGGTGGTGATGGAAGGA+CGG 0.539859 7_3:-32973424 Msa1101860:CDS
TCTACCAAATTCCAACGGCT+TGG 0.541139 7_3:-32971923 Msa1101860:CDS
AGAACCAGATGGTGAAGGAA+TGG 0.542948 7_3:-32973340 Msa1101860:CDS
CAATTGTTACTCTCTTTCAA+AGG 0.547491 7_3:+32966046 None:intergenic
GCCATTAGAAAGGATGATCC+TGG 0.549523 7_3:+32972391 None:intergenic
AACGGGTGTAGCCATTAGAA+AGG 0.560818 7_3:+32972381 None:intergenic
AGATGGTGAAGGAATGGAGG+AGG 0.563375 7_3:-32973334 Msa1101860:CDS
TCATCAATCATCACTCCGAA+TGG 0.572242 7_3:-32967004 Msa1101860:CDS
GTTTGGAGATTGTTCTCAGT+AGG 0.573263 7_3:-32966244 Msa1101860:three_prime_UTR
TGGTGGTGATGGAAGGACGG+TGG 0.574425 7_3:-32973421 Msa1101860:CDS
CAAAAGAGATTGAATCAGCA+TGG 0.580541 7_3:-32966221 Msa1101860:three_prime_UTR
TATTGTAACCACCAAGCCGT+TGG 0.580723 7_3:+32971912 None:intergenic
ATTTGGTAGATCAAATAAAG+AGG 0.586104 7_3:+32971936 None:intergenic
TCTAGCGAATTCGAACGCCT+TGG 0.591653 7_3:-32966518 Msa1101860:CDS
GACGATAGTGATGGTGATGG+TGG 0.594114 7_3:-32973438 None:intergenic
ATGGTGATGGTGGTGATGGA+AGG 0.598050 7_3:-32973428 Msa1101860:CDS
TTGGATTCAGATTTGTGTGA+GGG 0.598838 7_3:-32966589 Msa1101860:CDS
GATAAAGAACCAGATGGTGA+AGG 0.602240 7_3:-32973345 Msa1101860:CDS
CTGAGAACAATCTCCAAACA+TGG 0.602602 7_3:+32966248 None:intergenic
AAAGAAGATAAAGAACCAGA+TGG 0.608797 7_3:-32973351 Msa1101860:CDS
ACCAGATGGTGAAGGAATGG+AGG 0.612255 7_3:-32973337 Msa1101860:CDS
TCAGTGTCCACCTCTACCAA+AGG 0.616602 7_3:+32966391 None:intergenic
TTTGATCTACCAAATTCCAA+CGG 0.617018 7_3:-32971928 Msa1101860:CDS
GAGGACGATAGTGATGGTGA+TGG 0.636965 7_3:-32973441 None:intergenic
TGGTAGATCAAATAAAGAGG+TGG 0.638440 7_3:+32971939 None:intergenic
TTTGGATTCAGATTTGTGTG+AGG 0.656640 7_3:-32966590 Msa1101860:CDS
AGCATCTATAGTCACAACCA+AGG 0.708480 7_3:+32966501 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCCATTTATATATTA+AGG - chr7_3:32966558-32966577 Msa1101860:CDS 10.0%
!!! TTATAATTTTATAGGATTTT+AGG + chr7_3:32967240-32967259 None:intergenic 10.0%
!!! AAGTATAAATTTTTACATAT+TGG - chr7_3:32967340-32967359 Msa1101860:intron 10.0%
!!! TTTTTTTTTTGAAGTATAAA+TGG - chr7_3:32967969-32967988 Msa1101860:intron 10.0%
!!! ATAGTGTAATTTTTAATTTA+GGG + chr7_3:32968793-32968812 None:intergenic 10.0%
!!! TATAGTGTAATTTTTAATTT+AGG + chr7_3:32968794-32968813 None:intergenic 10.0%
!! AATAATGATCATTTAAAAAA+TGG - chr7_3:32969633-32969652 Msa1101860:intron 10.0%
!! TTATTAAATTTCATCATATT+CGG - chr7_3:32971279-32971298 Msa1101860:intron 10.0%
!!! TTAACATTATTATTTGATTT+GGG + chr7_3:32973106-32973125 None:intergenic 10.0%
!! ATTAACATTATTATTTGATT+TGG + chr7_3:32973107-32973126 None:intergenic 10.0%
!! AAATAATAATGTTAATAATC+AGG - chr7_3:32973111-32973130 Msa1101860:intron 10.0%
!! AATAATAATGTTAATAATCA+GGG - chr7_3:32973112-32973131 Msa1101860:intron 10.0%
!! AAACATCCTTAATATATAAA+TGG + chr7_3:32966567-32966586 None:intergenic 15.0%
!! TAGATCATATAATACAAATT+TGG + chr7_3:32967014-32967033 None:intergenic 15.0%
!!! AGTTAGCAAATATATATTTT+TGG + chr7_3:32967293-32967312 None:intergenic 15.0%
!!! AAAATATATATTTGCTAACT+AGG - chr7_3:32967293-32967312 Msa1101860:intron 15.0%
!!! AAATATATATTTGCTAACTA+GGG - chr7_3:32967294-32967313 Msa1101860:intron 15.0%
!!! TAAATTTTTACATATTGGAT+TGG - chr7_3:32967345-32967364 Msa1101860:intron 15.0%
!! TATTATGAAGTTCTATATTT+AGG - chr7_3:32967899-32967918 Msa1101860:intron 15.0%
!! AAACAAATCTAAATCTTATA+TGG - chr7_3:32968545-32968564 Msa1101860:intron 15.0%
!!! TAGTGTAATTTTTAATTTAG+GGG + chr7_3:32968792-32968811 None:intergenic 15.0%
!! GTCTTTATATTTAAAAAGTA+TGG + chr7_3:32968892-32968911 None:intergenic 15.0%
!!! TCGATAATGATATTATTTTT+AGG - chr7_3:32969006-32969025 Msa1101860:intron 15.0%
!!! TCTCAAATACATAATTTTTT+CGG + chr7_3:32969115-32969134 None:intergenic 15.0%
!! ATGCAAAAGTAATAAAAATA+AGG + chr7_3:32969202-32969221 None:intergenic 15.0%
!!! TTTTTTTTTGTACAAACTTT+GGG + chr7_3:32969480-32969499 None:intergenic 15.0%
!!! TTTTTTTTTTGTACAAACTT+TGG + chr7_3:32969481-32969500 None:intergenic 15.0%
!! AAAAATTATGTAAACACTTT+GGG + chr7_3:32969514-32969533 None:intergenic 15.0%
!!! TGTTTTCTTTTTTTCAATTT+GGG + chr7_3:32969872-32969891 None:intergenic 15.0%
!!! ATGTTTTCTTTTTTTCAATT+TGG + chr7_3:32969873-32969892 None:intergenic 15.0%
!!! TTTAGAGTTAATTAAGTTTT+TGG - chr7_3:32970213-32970232 Msa1101860:intron 15.0%
!!! AAGTGTGATTTATTTTTATA+GGG + chr7_3:32970271-32970290 None:intergenic 15.0%
!!! AAAGTGTGATTTATTTTTAT+AGG + chr7_3:32970272-32970291 None:intergenic 15.0%
!!! TAAAAATAAATCACACTTTT+TGG - chr7_3:32970273-32970292 Msa1101860:intron 15.0%
!!! AAAATTTTCATCAACATTTT+TGG - chr7_3:32970367-32970386 Msa1101860:intron 15.0%
!!! AAAGTGTGATTTTATTTTAT+AGG - chr7_3:32970427-32970446 Msa1101860:intron 15.0%
!!! AAGTGTGATTTTATTTTATA+GGG - chr7_3:32970428-32970447 Msa1101860:intron 15.0%
!!! TTATCATAATTTTGTTATAC+TGG + chr7_3:32970598-32970617 None:intergenic 15.0%
!!! ATTATGATAAAACATTGTTT+TGG - chr7_3:32970608-32970627 Msa1101860:intron 15.0%
!!! TTTAAGTGATTAAATTTTGA+AGG - chr7_3:32970968-32970987 Msa1101860:intron 15.0%
!!! TTAAGTGATTAAATTTTGAA+GGG - chr7_3:32970969-32970988 Msa1101860:intron 15.0%
!!! AATTAAACATTTTAACATCA+AGG + chr7_3:32971494-32971513 None:intergenic 15.0%
!! TGAAAATGAAATTATTTCAA+TGG + chr7_3:32971824-32971843 None:intergenic 15.0%
!! CAAAGAAATTAAAGAATTTA+TGG - chr7_3:32971889-32971908 Msa1101860:CDS 15.0%
!! TATATATGTTCTTAATCTTA+GGG + chr7_3:32971956-32971975 None:intergenic 15.0%
!! ATATATATGTTCTTAATCTT+AGG + chr7_3:32971957-32971976 None:intergenic 15.0%
!! AAAAACTATGTATATATTAG+TGG + chr7_3:32972372-32972391 None:intergenic 15.0%
!!! TTTTAATTTTGTAAGGTTTT+AGG + chr7_3:32972625-32972644 None:intergenic 15.0%
!!! AACTATAATTTTCTTCATAT+TGG - chr7_3:32972725-32972744 Msa1101860:intron 15.0%
!!! ACTATAATTTTCTTCATATT+GGG - chr7_3:32972726-32972745 Msa1101860:intron 15.0%
!!! TAACATTATTATTTGATTTG+GGG + chr7_3:32973105-32973124 None:intergenic 15.0%
!! TTCAATTATCACAACTATTA+TGG - chr7_3:32967154-32967173 Msa1101860:intron 20.0%
!! ATCCTATAAAATTATAACAG+TGG - chr7_3:32967243-32967262 Msa1101860:intron 20.0%
!! TGAATGACATAAACTTTAAT+TGG - chr7_3:32967477-32967496 Msa1101860:intron 20.0%
!! TAGATTTAAAAGTTGAGTAT+AGG - chr7_3:32967579-32967598 Msa1101860:intron 20.0%
!! AGATTTAAAAGTTGAGTATA+GGG - chr7_3:32967580-32967599 Msa1101860:intron 20.0%
!! AATGAAGAAATTTCTTAAAC+CGG - chr7_3:32967616-32967635 Msa1101860:intron 20.0%
!! AAAAGAAAAAACTCCAAATA+TGG + chr7_3:32967805-32967824 None:intergenic 20.0%
!! TATATTTAGGCTAGTAATTA+TGG - chr7_3:32967912-32967931 Msa1101860:intron 20.0%
!!! TGGACTCAATTTTAATTTTA+AGG - chr7_3:32967937-32967956 Msa1101860:intron 20.0%
!!! GGACTCAATTTTAATTTTAA+GGG - chr7_3:32967938-32967957 Msa1101860:intron 20.0%
!! TATTGTAGTATAATGTTCTA+GGG - chr7_3:32968200-32968219 Msa1101860:intron 20.0%
!! CACATATCTAAGTTTAATTA+AGG + chr7_3:32968478-32968497 None:intergenic 20.0%
!! CTTAATTAAACTTAGATATG+TGG - chr7_3:32968476-32968495 Msa1101860:intron 20.0%
!!! AAATCTTTTATTTTAAGTGG+GGG + chr7_3:32968768-32968787 None:intergenic 20.0%
!!! GAAATCTTTTATTTTAAGTG+GGG + chr7_3:32968769-32968788 None:intergenic 20.0%
!!! GGAAATCTTTTATTTTAAGT+GGG + chr7_3:32968770-32968789 None:intergenic 20.0%
!!! AGTGTAATTTTTAATTTAGG+GGG + chr7_3:32968791-32968810 None:intergenic 20.0%
!!! TTATTTTTAGGACAAAACTT+AGG - chr7_3:32969018-32969037 Msa1101860:intron 20.0%
!! TTATGTATTTGAGAAAATCA+TGG - chr7_3:32969121-32969140 Msa1101860:intron 20.0%
!!! AATTCCTTATTGTTTTTTGT+AGG + chr7_3:32969164-32969183 None:intergenic 20.0%
!! TAAAAATAAGGAAAAAACCT+AGG + chr7_3:32969190-32969209 None:intergenic 20.0%
!! GAAAAATTATGTAAACACTT+TGG + chr7_3:32969515-32969534 None:intergenic 20.0%
!!! ATTATTTGAGTTCAAACTTT+GGG + chr7_3:32969537-32969556 None:intergenic 20.0%
!! AATTCATTATGTTGCAATAT+GGG + chr7_3:32969575-32969594 None:intergenic 20.0%
!! TAATTCATTATGTTGCAATA+TGG + chr7_3:32969576-32969595 None:intergenic 20.0%
!! TTAAATGATCATTATTTGCA+GGG + chr7_3:32969629-32969648 None:intergenic 20.0%
!! TTTAAATGATCATTATTTGC+AGG + chr7_3:32969630-32969649 None:intergenic 20.0%
!!! TAAATGATTAAATTTTGGCA+TGG + chr7_3:32969688-32969707 None:intergenic 20.0%
!! AGAAGAAGATAAGATTATAA+AGG - chr7_3:32970069-32970088 Msa1101860:intron 20.0%
!! GAAGAAGATAAGATTATAAA+GGG - chr7_3:32970070-32970089 Msa1101860:intron 20.0%
!!! TGTTGATGGAAAATTTTATA+AGG + chr7_3:32970331-32970350 None:intergenic 20.0%
!! ATAAAGACTAAAAATGTTGA+TGG + chr7_3:32970345-32970364 None:intergenic 20.0%
!!! TAAGTGATTAAATTTTGAAG+GGG - chr7_3:32970970-32970989 Msa1101860:intron 20.0%
!! TTAATAAGCTTATTGATCAA+TGG + chr7_3:32971266-32971285 None:intergenic 20.0%
!! ACAATAAGTAAGTATATTGA+AGG + chr7_3:32971534-32971553 None:intergenic 20.0%
!!! ACAATAACTCTTTTCATATA+TGG + chr7_3:32971598-32971617 None:intergenic 20.0%
!!! TTATGGTGTAATAGTAATTT+TGG + chr7_3:32971740-32971759 None:intergenic 20.0%
!! TAGTAAAGTTCAAAGATTAA+GGG + chr7_3:32972121-32972140 None:intergenic 20.0%
!! TTAGTAAAGTTCAAAGATTA+AGG + chr7_3:32972122-32972141 None:intergenic 20.0%
!! ACTTATGAAAACTTATAAAC+TGG - chr7_3:32972277-32972296 Msa1101860:intron 20.0%
!! CAAAATAAAAAGAATCCATT+CGG + chr7_3:32972466-32972485 None:intergenic 20.0%
!!! TCTATGGTTTTAATTTTGTA+AGG + chr7_3:32972632-32972651 None:intergenic 20.0%
!!! ATAGGGTTTGTTATAAATTA+TGG - chr7_3:32973002-32973021 Msa1101860:intron 20.0%
!! TTATCTATTTGAAAATCCTT+TGG - chr7_3:32973045-32973064 Msa1101860:intron 20.0%
!! TGGATTCTATATATATGTTA+TGG - chr7_3:32973153-32973172 Msa1101860:intron 20.0%
!! CATAAATACAATAAAAAGAG+AGG + chr7_3:32973282-32973301 Msa1101870:CDS 20.0%
!!! CTTTTTATTGTATTTATGAG+TGG - chr7_3:32973284-32973303 Msa1101860:intron 20.0%
!! TGTAATATGTCTAGTAATTA+TGG - chr7_3:32973309-32973328 Msa1101860:intron 20.0%
!!! TACAAATTCTAAAAAGCATA+AGG + chr7_3:32973358-32973377 Msa1101870:CDS 20.0%
! ATTCACTTTCTTCAATAAGT+TGG + chr7_3:32966226-32966245 None:intergenic 25.0%
! GAACCAAATACACATTTAAA+AGG + chr7_3:32966326-32966345 None:intergenic 25.0%
! TTAATTCAGTACAAAATGGA+AGG - chr7_3:32966497-32966516 Msa1101860:CDS 25.0%
!!! AGAATTGTGAAAATTTGTTG+GGG + chr7_3:32966698-32966717 None:intergenic 25.0%
!! GAGAATTGTGAAAATTTGTT+GGG + chr7_3:32966699-32966718 None:intergenic 25.0%
! AGAGAATTGTGAAAATTTGT+TGG + chr7_3:32966700-32966719 None:intergenic 25.0%
! TATGTAAATACTTACATGGA+CGG + chr7_3:32966769-32966788 None:intergenic 25.0%
! GCTTTATGTAAATACTTACA+TGG + chr7_3:32966773-32966792 None:intergenic 25.0%
! ATTTACATAAAGCTCATTTG+TGG - chr7_3:32966780-32966799 Msa1101860:CDS 25.0%
!! CACCACTGTTATAATTTTAT+AGG + chr7_3:32967248-32967267 None:intergenic 25.0%
! AAATAGAGTCTTCAAATTCA+GGG + chr7_3:32967430-32967449 None:intergenic 25.0%
! AAAATAGAGTCTTCAAATTC+AGG + chr7_3:32967431-32967450 None:intergenic 25.0%
!! TGAATTTGAAGACTCTATTT+TGG - chr7_3:32967430-32967449 Msa1101860:intron 25.0%
! AATAAAGAGGTGGAAAAATT+CGG + chr7_3:32967506-32967525 None:intergenic 25.0%
! ATTTGGTAGATCAAATAAAG+AGG + chr7_3:32967519-32967538 None:intergenic 25.0%
!! CTTTTAAATCTACAGAATCT+GGG + chr7_3:32967571-32967590 None:intergenic 25.0%
!! ACTTTTAAATCTACAGAATC+TGG + chr7_3:32967572-32967591 None:intergenic 25.0%
!! GGATTTTCAAAAAGATAATC+CGG + chr7_3:32967638-32967657 None:intergenic 25.0%
!!! GGATTATCTTTTTGAAAATC+CGG - chr7_3:32967637-32967656 Msa1101860:intron 25.0%
!! TAAATGGATTCTGATTTGAT+TGG - chr7_3:32967985-32968004 Msa1101860:intron 25.0%
! AGCAAGAATATAAGATCAAA+AGG + chr7_3:32968181-32968200 None:intergenic 25.0%
! CTATTGTAGTATAATGTTCT+AGG - chr7_3:32968199-32968218 Msa1101860:intron 25.0%
! ATTGTAGTATAATGTTCTAG+GGG - chr7_3:32968201-32968220 Msa1101860:intron 25.0%
! TTCTATACCTAGTTTAATGT+AGG + chr7_3:32968378-32968397 None:intergenic 25.0%
!!! CATATTCTTTAGTTTGATTG+TGG + chr7_3:32968591-32968610 None:intergenic 25.0%
! CAAAGATCAACATATATAAG+AGG + chr7_3:32968730-32968749 None:intergenic 25.0%
!!! GGGAAATCTTTTATTTTAAG+TGG + chr7_3:32968771-32968790 None:intergenic 25.0%
! AAACTTAGGTACAATTCTTT+AGG - chr7_3:32969032-32969051 Msa1101860:intron 25.0%
! GAATCCTACAAAAAACAATA+AGG - chr7_3:32969157-32969176 Msa1101860:intron 25.0%
! AACAACATTTACCTACATAT+TGG - chr7_3:32969295-32969314 Msa1101860:intron 25.0%
! ACAACATTTACCTACATATT+GGG - chr7_3:32969296-32969315 Msa1101860:intron 25.0%
! TTATAACTCATGAATCTCTT+TGG + chr7_3:32969361-32969380 None:intergenic 25.0%
! AAGGAAATTATTGAGTATGT+TGG + chr7_3:32969456-32969475 None:intergenic 25.0%
!! GATTATTTGAGTTCAAACTT+TGG + chr7_3:32969538-32969557 None:intergenic 25.0%
! GCAACATAATGAATTAATCA+AGG - chr7_3:32969580-32969599 Msa1101860:intron 25.0%
! GTTCATGTGTTCTTAAATTA+GGG + chr7_3:32969900-32969919 None:intergenic 25.0%
! TGTTCATGTGTTCTTAAATT+AGG + chr7_3:32969901-32969920 None:intergenic 25.0%
! AGATTATAAAGGGAAGATTA+TGG - chr7_3:32970080-32970099 Msa1101860:intron 25.0%
!! CACTAACGAAAAATTTTGTA+GGG + chr7_3:32970300-32970319 None:intergenic 25.0%
!! ACACTAACGAAAAATTTTGT+AGG + chr7_3:32970301-32970320 None:intergenic 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr7_3:32970394-32970413 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr7_3:32970395-32970414 None:intergenic 25.0%
!!! AGACTTTTTTAAATCTGCAT+TGG + chr7_3:32970570-32970589 None:intergenic 25.0%
! AGCATGTGTTGAAAATTTAT+CGG + chr7_3:32970711-32970730 None:intergenic 25.0%
! TTTCCAATTACGATCATAAA+GGG + chr7_3:32970735-32970754 None:intergenic 25.0%
! AGAAGAAGAAGATTATGAAT+TGG - chr7_3:32970764-32970783 Msa1101860:intron 25.0%
! ATTATGAATTGGAATGTAGA+GGG - chr7_3:32970775-32970794 Msa1101860:intron 25.0%
! AATAAGAAATGAGAAAGACA+AGG + chr7_3:32971083-32971102 None:intergenic 25.0%
! TTGTCTTTCTCATTTCTTAT+TGG - chr7_3:32971082-32971101 Msa1101860:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_3:32971095-32971114 Msa1101860:intron 25.0%
!!! AACCACTTTTTAACAACTTT+TGG + chr7_3:32971180-32971199 None:intergenic 25.0%
! TTAAATGATCCATATTTGCA+AGG - chr7_3:32971222-32971241 Msa1101860:intron 25.0%
! TTCATCATATTCGGAATTAA+TGG - chr7_3:32971288-32971307 Msa1101860:intron 25.0%
!!! TGTTTTTGGCGATAAAATAT+TGG - chr7_3:32971358-32971377 Msa1101860:intron 25.0%
!!! GTTTTTGGCGATAAAATATT+GGG - chr7_3:32971359-32971378 Msa1101860:intron 25.0%
!!! TTTTTGGCGATAAAATATTG+GGG - chr7_3:32971360-32971379 Msa1101860:intron 25.0%
! ACTAACAAAATGCATAATCA+GGG + chr7_3:32971462-32971481 None:intergenic 25.0%
!! TGTCTTTAATTTATTGAGCA+AGG + chr7_3:32971919-32971938 None:intergenic 25.0%
! TGCTCAATAAATTAAAGACA+TGG - chr7_3:32971919-32971938 Msa1101860:CDS 25.0%
!!! TTTTTTTATGACGTTGTTGT+TGG + chr7_3:32972552-32972571 None:intergenic 25.0%
!! TACTGAAAGATTTTCTTCTA+TGG + chr7_3:32972648-32972667 None:intergenic 25.0%
!! TAATTTTCTTCATATTGGGT+TGG - chr7_3:32972730-32972749 Msa1101860:intron 25.0%
!! AGACTGAATCTTCAAATTTT+TGG + chr7_3:32972835-32972854 None:intergenic 25.0%
! AAAATTTGAAGATTCAGTCT+TGG - chr7_3:32972835-32972854 Msa1101860:intron 25.0%
!! TAATTGGTTTCCAAATTTCT+CGG - chr7_3:32972898-32972917 Msa1101860:intron 25.0%
!! ATTGTCTATCTTTAGAAGTT+AGG - chr7_3:32972978-32972997 Msa1101860:intron 25.0%
!! TATCTTTAGAAGTTAGGTAT+AGG - chr7_3:32972984-32973003 Msa1101860:intron 25.0%
!! ATCTTTAGAAGTTAGGTATA+GGG - chr7_3:32972985-32973004 Msa1101860:intron 25.0%
! TGGAAGAAATCTATTAAACT+TGG - chr7_3:32973022-32973041 Msa1101860:intron 25.0%
! GGTTAAGTATATAAGATCAA+TGG - chr7_3:32973133-32973152 Msa1101860:intron 25.0%
AAAGAAGATAAAGAACCAGA+TGG - chr7_3:32966101-32966120 Msa1101860:three_prime_UTR 30.0%
! GTGGAATTGTGATTTGAAAT+AGG - chr7_3:32966152-32966171 Msa1101860:three_prime_UTR 30.0%
CACTTGTTTGAAAGTCAAAT+TGG - chr7_3:32966185-32966204 Msa1101860:three_prime_UTR 30.0%
ATTGAAGAAAGTGAATCACA+TGG - chr7_3:32966230-32966249 Msa1101860:three_prime_UTR 30.0%
TTGAAGAAAGTGAATCACAT+GGG - chr7_3:32966231-32966250 Msa1101860:three_prime_UTR 30.0%
! CTGCCTTTTAAATGTGTATT+TGG - chr7_3:32966320-32966339 Msa1101860:exon 30.0%
AATTAGCCAATAGGAGTAAA+GGG + chr7_3:32966373-32966392 None:intergenic 30.0%
GCAAAATACAATTAGCCAAT+AGG + chr7_3:32966382-32966401 None:intergenic 30.0%
! TTTTGTACTGAATTAATGCC+TGG + chr7_3:32966493-32966512 None:intergenic 30.0%
GGCATTAATTCAGTACAAAA+TGG - chr7_3:32966493-32966512 Msa1101860:CDS 30.0%
AAGCAACTTATAAATGACAC+GGG + chr7_3:32966630-32966649 None:intergenic 30.0%
GAAGCAACTTATAAATGACA+CGG + chr7_3:32966631-32966650 None:intergenic 30.0%
!! TGAAAATTTGTTGGGGAATA+AGG + chr7_3:32966691-32966710 None:intergenic 30.0%
ATGAAGAAATGATTTCTCGA+CGG - chr7_3:32966939-32966958 Msa1101860:CDS 30.0%
AAAATGAAGTAGCAAAGAAG+TGG + chr7_3:32966979-32966998 None:intergenic 30.0%
TCAGAATCATTAACAAGAAC+GGG + chr7_3:32967091-32967110 None:intergenic 30.0%
CTCAGAATCATTAACAAGAA+CGG + chr7_3:32967092-32967111 None:intergenic 30.0%
AAAAACTGATGCAGCTAAAA+AGG - chr7_3:32967114-32967133 Msa1101860:intron 30.0%
GGCATAGAAAACATATCAAT+AGG - chr7_3:32967175-32967194 Msa1101860:intron 30.0%
TTTGATCTACCAAATTCCAA+CGG - chr7_3:32967524-32967543 Msa1101860:intron 30.0%
!! TTTTGAAAATCCGGTATTAG+AGG - chr7_3:32967646-32967665 Msa1101860:intron 30.0%
!! AGAGTATTGTTATCAACAGA+TGG - chr7_3:32967838-32967857 Msa1101860:intron 30.0%
! ACAACACTTGTCGTTTAAAA+AGG - chr7_3:32968281-32968300 Msa1101860:intron 30.0%
TTGTAGCATTATAGTGTAGT+TGG - chr7_3:32968310-32968329 Msa1101860:intron 30.0%
TGTAGCATTATAGTGTAGTT+GGG - chr7_3:32968311-32968330 Msa1101860:intron 30.0%
! CTTTTTGCCTACATTAAACT+AGG - chr7_3:32968368-32968387 Msa1101860:intron 30.0%
CTAGGTATAGAATTGTAGTA+AGG - chr7_3:32968386-32968405 Msa1101860:intron 30.0%
!! GAAAAGCATTCTTTGTTCAT+TGG - chr7_3:32968423-32968442 Msa1101860:intron 30.0%
!! TTTTGTTGCTTGTGAATGTT+TGG + chr7_3:32968527-32968546 None:intergenic 30.0%
AACAATAAGGAATTGTACCT+AGG - chr7_3:32969170-32969189 Msa1101860:intron 30.0%
!!! GATCAAAAATTTTGACTTGC+AGG + chr7_3:32969268-32969287 None:intergenic 30.0%
TAGGTAAATGTTGTTAGTGA+TGG + chr7_3:32969290-32969309 None:intergenic 30.0%
CAACATTTACCTACATATTG+GGG - chr7_3:32969297-32969316 Msa1101860:intron 30.0%
! TCTTTTTCTCGAATCTCTTA+TGG - chr7_3:32969427-32969446 Msa1101860:intron 30.0%
! TTTTGTACAAACTTTGGGTA+AGG + chr7_3:32969475-32969494 None:intergenic 30.0%
TTATGTAAACACTTTGGGTA+AGG + chr7_3:32969509-32969528 None:intergenic 30.0%
! AAAACTGTCATTTCACTTGT+GGG + chr7_3:32969784-32969803 None:intergenic 30.0%
! TAAAACTGTCATTTCACTTG+TGG + chr7_3:32969785-32969804 None:intergenic 30.0%
! TGGATCTAATAAGCTTTTAC+AGG - chr7_3:32970023-32970042 Msa1101860:intron 30.0%
TCTTATCTTCTTCTTCGTTA+TGG + chr7_3:32970063-32970082 None:intergenic 30.0%
AATTACAAGCCAAGTACAAA+AGG - chr7_3:32970155-32970174 Msa1101860:intron 30.0%
! CAAGATTTTCCTTTTGTACT+TGG + chr7_3:32970167-32970186 None:intergenic 30.0%
TACCAAGTTGCACAAATTAT+TGG + chr7_3:32970190-32970209 None:intergenic 30.0%
ATATCCAGGTCTTAAAATCT+CGG + chr7_3:32970503-32970522 None:intergenic 30.0%
! CTTTTGCTAAACTAATATCC+AGG + chr7_3:32970517-32970536 None:intergenic 30.0%
! TTTTGGATATCAGTTTCGTA+GGG - chr7_3:32970625-32970644 Msa1101860:intron 30.0%
CTTTCCAATTACGATCATAA+AGG + chr7_3:32970736-32970755 None:intergenic 30.0%
CTTTATGATCGTAATTGGAA+AGG - chr7_3:32970734-32970753 Msa1101860:intron 30.0%
GATTATGAATTGGAATGTAG+AGG - chr7_3:32970774-32970793 Msa1101860:intron 30.0%
CAATTGTCTGATAAGTTCAA+GGG - chr7_3:32970851-32970870 Msa1101860:intron 30.0%
TGAATGTTAATTGGTCAAGT+TGG + chr7_3:32970895-32970914 None:intergenic 30.0%
GCAATGATTAATTGAGCTTA+GGG - chr7_3:32970938-32970957 Msa1101860:intron 30.0%
ATGCTAGAATTAACGATTAC+AGG - chr7_3:32970997-32971016 Msa1101860:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr7_3:32971057-32971076 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr7_3:32971108-32971127 Msa1101860:intron 30.0%
GTCCAAAAGTTGTTAAAAAG+TGG - chr7_3:32971175-32971194 Msa1101860:intron 30.0%
! ATGATTAGTCCTTGCAAATA+TGG + chr7_3:32971234-32971253 None:intergenic 30.0%
GGTAGTATAATAATACGACT+TGG - chr7_3:32971309-32971328 Msa1101860:intron 30.0%
GACTAACAAAATGCATAATC+AGG + chr7_3:32971463-32971482 None:intergenic 30.0%
!!! GAAAGATTATTTTAGTGTCG+AGG - chr7_3:32971625-32971644 Msa1101860:intron 30.0%
AAAATGACTAATCATTACCG+AGG - chr7_3:32971712-32971731 Msa1101860:intron 30.0%
AAATGACTAATCATTACCGA+GGG - chr7_3:32971713-32971732 Msa1101860:intron 30.0%
!! TAATAGTAATTTTGGTCCCT+CGG + chr7_3:32971732-32971751 None:intergenic 30.0%
!! AGAGACTTGTTAAGAGATAA+TGG + chr7_3:32972020-32972039 None:intergenic 30.0%
!! AAGAATTTAGCTTGTTGAAG+GGG + chr7_3:32972320-32972339 None:intergenic 30.0%
!! GAAGAATTTAGCTTGTTGAA+GGG + chr7_3:32972321-32972340 None:intergenic 30.0%
!! AGAAGAATTTAGCTTGTTGA+AGG + chr7_3:32972322-32972341 None:intergenic 30.0%
TAATTTACCGCATATTTCAC+AGG - chr7_3:32972418-32972437 Msa1101860:intron 30.0%
AATTTACCGCATATTTCACA+GGG - chr7_3:32972419-32972438 Msa1101860:intron 30.0%
! CACAATTGATGATAGTGAAA+AGG - chr7_3:32972499-32972518 Msa1101860:intron 30.0%
!! TTAAGTGTTGCTTGTGAAAA+TGG + chr7_3:32972782-32972801 None:intergenic 30.0%
AGGGTGACATAAAGTTTAAT+TGG - chr7_3:32972882-32972901 Msa1101860:intron 30.0%
! ACTTCTAAAGATAGACAATC+TGG + chr7_3:32972977-32972996 None:intergenic 30.0%
ATTTGAAAATCCTTTGGTAG+AGG - chr7_3:32973051-32973070 Msa1101860:intron 30.0%
AGAATAAAGTATGCCATGTT+TGG - chr7_3:32973191-32973210 Msa1101860:intron 30.0%
TATGTCTAGTAATTATGGCT+TGG - chr7_3:32973314-32973333 Msa1101860:intron 30.0%
CAAAGGTGAAATGTAAATTC+TGG + chr7_3:32973392-32973411 Msa1101870:CDS 30.0%
CAATTGTTACTCTCTTTCAA+AGG + chr7_3:32973409-32973428 Msa1101870:CDS 30.0%
GACTTTCAAACAAGTGACTT+GGG + chr7_3:32966181-32966200 None:intergenic 35.0%
TGACTTTCAAACAAGTGACT+TGG + chr7_3:32966182-32966201 None:intergenic 35.0%
! TTTCTTCAATAAGTTGGCAG+AGG + chr7_3:32966220-32966239 None:intergenic 35.0%
TGAAGAAAGTGAATCACATG+GGG - chr7_3:32966232-32966251 Msa1101860:three_prime_UTR 35.0%
TGATGTTAACGTGTAAAACC+AGG - chr7_3:32966271-32966290 Msa1101860:three_prime_UTR 35.0%
GATGTTAACGTGTAAAACCA+GGG - chr7_3:32966272-32966291 Msa1101860:three_prime_UTR 35.0%
ACACATTTAAAAGGCAGTCA+TGG + chr7_3:32966317-32966336 None:intergenic 35.0%
CAATTAGCCAATAGGAGTAA+AGG + chr7_3:32966374-32966393 None:intergenic 35.0%
AAAATGGAAGGAGCTTCATT+AGG - chr7_3:32966509-32966528 Msa1101860:CDS 35.0%
TCACAATTCTCTCTTTCCTT+TGG - chr7_3:32966708-32966727 Msa1101860:CDS 35.0%
GATGGTTGTTAGATCAAGAT+TGG + chr7_3:32966905-32966924 None:intergenic 35.0%
AAGTAGCAAAGAAGTGGATA+TGG + chr7_3:32966973-32966992 None:intergenic 35.0%
!!! TTAAACTTGTTTTGCAGACC+AGG - chr7_3:32967043-32967062 Msa1101860:intron 35.0%
CTCTCAAACTTATTGACACA+GGG + chr7_3:32967397-32967416 None:intergenic 35.0%
TCTCTCAAACTTATTGACAC+AGG + chr7_3:32967398-32967417 None:intergenic 35.0%
TGGTAGATCAAATAAAGAGG+TGG + chr7_3:32967516-32967535 None:intergenic 35.0%
GGTTACAACATTTGCTTTCT+CGG + chr7_3:32967678-32967697 None:intergenic 35.0%
! TCAAGTTGTGAAGATGGAAA+AGG - chr7_3:32967748-32967767 Msa1101860:intron 35.0%
!! TTAAGGCTTCATTGATTCCA+TGG + chr7_3:32967777-32967796 None:intergenic 35.0%
TTAGGCTAGTAATTATGGCT+TGG - chr7_3:32967917-32967936 Msa1101860:intron 35.0%
!! ATAATGTTCTAGGGGATCTA+AGG - chr7_3:32968209-32968228 Msa1101860:intron 35.0%
TTCAGTACAACACTCAGAAA+CGG - chr7_3:32968661-32968680 Msa1101860:intron 35.0%
ATCTACTTGTCGTAGATTAG+AGG - chr7_3:32968684-32968703 Msa1101860:intron 35.0%
ATATAAGAGGAACCGTAGTT+GGG + chr7_3:32968717-32968736 None:intergenic 35.0%
TATATAAGAGGAACCGTAGT+TGG + chr7_3:32968718-32968737 None:intergenic 35.0%
TGGAAGAAACTCTTTGATAG+TGG + chr7_3:32969341-32969360 None:intergenic 35.0%
! TTTTCTCGAATCTCTTATGG+TGG - chr7_3:32969430-32969449 Msa1101860:intron 35.0%
CATTATGTTGCAATATGGGA+TGG + chr7_3:32969571-32969590 None:intergenic 35.0%
ATGGTAAAATGCTGGGATTA+AGG + chr7_3:32969669-32969688 None:intergenic 35.0%
! TTTTGGCATGGTAAAATGCT+GGG + chr7_3:32969676-32969695 None:intergenic 35.0%
!! ATTTTGGCATGGTAAAATGC+TGG + chr7_3:32969677-32969696 None:intergenic 35.0%
ACGTCATCAAATTAATGACG+TGG + chr7_3:32969742-32969761 None:intergenic 35.0%
! ATGTTGTTTGCAGATACATC+CGG + chr7_3:32969844-32969863 None:intergenic 35.0%
ATGGTAGCTACAGAAAATAG+TGG - chr7_3:32970099-32970118 Msa1101860:intron 35.0%
!! TGTACTTGGCTTGTAATTGT+TGG + chr7_3:32970153-32970172 None:intergenic 35.0%
! TGCCAATAATTTGTGCAACT+TGG - chr7_3:32970185-32970204 Msa1101860:intron 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr7_3:32970385-32970404 Msa1101860:intron 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7_3:32970398-32970417 Msa1101860:intron 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7_3:32970399-32970418 Msa1101860:intron 35.0%
TATCCAGGTCTTAAAATCTC+GGG + chr7_3:32970502-32970521 None:intergenic 35.0%
!! GTTTTGGATATCAGTTTCGT+AGG - chr7_3:32970624-32970643 Msa1101860:intron 35.0%
CTTCCCTTTATGATCGTAAT+TGG - chr7_3:32970729-32970748 Msa1101860:intron 35.0%
TGAGGGAAACAAGAACAATA+TGG - chr7_3:32970811-32970830 Msa1101860:intron 35.0%
GAGGGAAACAAGAACAATAT+GGG - chr7_3:32970812-32970831 Msa1101860:intron 35.0%
CAAGAACAATATGGGTATTC+TGG - chr7_3:32970820-32970839 Msa1101860:intron 35.0%
GCAATTGTCTGATAAGTTCA+AGG - chr7_3:32970850-32970869 Msa1101860:intron 35.0%
GGCAATGATTAATTGAGCTT+AGG - chr7_3:32970937-32970956 Msa1101860:intron 35.0%
TATTGGGGTAATAGTCACTT+TGG - chr7_3:32971375-32971394 Msa1101860:intron 35.0%
TTGAAGTTGTGGTACATTGA+AGG + chr7_3:32971433-32971452 None:intergenic 35.0%
! TTTTGTCGTATTCTCAGCTT+GGG + chr7_3:32971771-32971790 None:intergenic 35.0%
! ATTTTGTCGTATTCTCAGCT+TGG + chr7_3:32971772-32971791 None:intergenic 35.0%
TCATTTCCTTGTCTCTTTCT+AGG - chr7_3:32971841-32971860 Msa1101860:intron 35.0%
AAGTTACCTAGAAAGAGACA+AGG + chr7_3:32971850-32971869 None:intergenic 35.0%
TGTCTCTTTCTAGGTAACTT+CGG - chr7_3:32971850-32971869 Msa1101860:intron 35.0%
AAAGTGCAGATTCTATTCTC+AGG + chr7_3:32972054-32972073 None:intergenic 35.0%
! TGACGTTGTTGTTGGAATAT+TGG + chr7_3:32972544-32972563 None:intergenic 35.0%
TTTGGATTCAGATTTGTGTG+AGG - chr7_3:32972862-32972881 Msa1101860:intron 35.0%
TTGGATTCAGATTTGTGTGA+GGG - chr7_3:32972863-32972882 Msa1101860:intron 35.0%
GACAAATGTACCGAGAAATT+TGG + chr7_3:32972911-32972930 None:intergenic 35.0%
CAAAAGAGATTGAATCAGCA+TGG - chr7_3:32973231-32973250 Msa1101860:intron 35.0%
GATAAAGAACCAGATGGTGA+AGG - chr7_3:32966107-32966126 Msa1101860:three_prime_UTR 40.0%
CATTTAAAAGGCAGTCATGG+TGG + chr7_3:32966314-32966333 None:intergenic 40.0%
GTTTGGTCAGCAATGTGAAT+TGG + chr7_3:32966415-32966434 None:intergenic 40.0%
! TTTAACCCTTGGTGTGTGTT+TGG + chr7_3:32966432-32966451 None:intergenic 40.0%
GGTAATGACTGTTTAACCCT+TGG + chr7_3:32966443-32966462 None:intergenic 40.0%
TTACCACAGTCAAAAACCCT+AGG - chr7_3:32966458-32966477 Msa1101860:CDS 40.0%
!! AATCCTAGGGTTTTTGACTG+TGG + chr7_3:32966464-32966483 None:intergenic 40.0%
TGTACTGAATTAATGCCTGG+CGG + chr7_3:32966490-32966509 None:intergenic 40.0%
! GAAGGAGCTTCATTAGGTTT+TGG - chr7_3:32966515-32966534 Msa1101860:CDS 40.0%
!!! AGCTTCATTAGGTTTTGGCT+AGG - chr7_3:32966520-32966539 Msa1101860:CDS 40.0%
!!! GCTTCATTAGGTTTTGGCTA+GGG - chr7_3:32966521-32966540 Msa1101860:CDS 40.0%
GGAAGATACAGATGAAAACC+TGG + chr7_3:32966737-32966756 None:intergenic 40.0%
! GGTTTTCATCTGTATCTTCC+AGG - chr7_3:32966737-32966756 Msa1101860:CDS 40.0%
TAAATACTTACATGGACGGC+TGG + chr7_3:32966765-32966784 None:intergenic 40.0%
TCATGCAGTCAACAAATCGA+TGG + chr7_3:32966923-32966942 None:intergenic 40.0%
AGAAATGATTTCTCGACGGT+AGG - chr7_3:32966943-32966962 Msa1101860:CDS 40.0%
GAAATGATTTCTCGACGGTA+GGG - chr7_3:32966944-32966963 Msa1101860:CDS 40.0%
AAATGATTTCTCGACGGTAG+GGG - chr7_3:32966945-32966964 Msa1101860:CDS 40.0%
ACCAGGATCATCCTTTCTAA+TGG - chr7_3:32967060-32967079 Msa1101860:intron 40.0%
ACAGGGATTGTTGCAAGATA+TGG + chr7_3:32967380-32967399 None:intergenic 40.0%
! TCGGTGTTTACCTCTAATAC+CGG + chr7_3:32967659-32967678 None:intergenic 40.0%
! ACTCGGATTGTTCGATTTGT+AGG + chr7_3:32967699-32967718 None:intergenic 40.0%
CAATCCGAGTTTAGTACAAC+CGG - chr7_3:32967709-32967728 Msa1101860:intron 40.0%
!! AAGGCTTCAAGTTGTGAAGA+TGG - chr7_3:32967742-32967761 Msa1101860:intron 40.0%
AGCCTTAAGCTAGCCATATT+TGG - chr7_3:32967789-32967808 Msa1101860:intron 40.0%
!! CTCCAAATATGGCTAGCTTA+AGG + chr7_3:32967794-32967813 None:intergenic 40.0%
AGCATTATAGTGTAGTTGGG+TGG - chr7_3:32968314-32968333 Msa1101860:intron 40.0%
GCTTGTGAATGTTTGGTTGT+TGG + chr7_3:32968520-32968539 None:intergenic 40.0%
TATAAGAGGAACCGTAGTTG+GGG + chr7_3:32968716-32968735 None:intergenic 40.0%
TGCTGGGATTAAGGAATACA+TGG + chr7_3:32969660-32969679 None:intergenic 40.0%
GAATGAGAAGATGAAGACAG+GGG + chr7_3:32969808-32969827 None:intergenic 40.0%
GGAATGAGAAGATGAAGACA+GGG + chr7_3:32969809-32969828 None:intergenic 40.0%
TCATTCCCTCTTCTTCTTAC+CGG - chr7_3:32969822-32969841 Msa1101860:intron 40.0%
TACATCCGGTAAGAAGAAGA+GGG + chr7_3:32969830-32969849 None:intergenic 40.0%
ATACATCCGGTAAGAAGAAG+AGG + chr7_3:32969831-32969850 None:intergenic 40.0%
AGGAGGGTAAAGAACAACAT+CGG + chr7_3:32969953-32969972 None:intergenic 40.0%
TGGGTTTCAGATTGAAGCTT+TGG - chr7_3:32970003-32970022 Msa1101860:intron 40.0%
!!! TAACCCGAGATTTTAAGACC+TGG - chr7_3:32970496-32970515 Msa1101860:intron 40.0%
TGGAATGTAGAGGGTAAAGA+AGG - chr7_3:32970784-32970803 Msa1101860:intron 40.0%
! AGGGTAAAGAAGGTATGTGA+GGG - chr7_3:32970794-32970813 Msa1101860:intron 40.0%
GGTGAGGTGTGAATGTTAAT+TGG + chr7_3:32970904-32970923 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr7_3:32971118-32971137 Msa1101860:intron 40.0%
TGGAATAAGCCAAATGACGA+AGG - chr7_3:32971329-32971348 Msa1101860:intron 40.0%
ACATCAAAGCCTTCGTCATT+TGG + chr7_3:32971341-32971360 None:intergenic 40.0%
!! GACGAAGGCTTTGATGTTTT+TGG - chr7_3:32971344-32971363 Msa1101860:intron 40.0%
!!! CAGGGACTATTTTGAAGTTG+TGG + chr7_3:32971444-32971463 None:intergenic 40.0%
! CAGCTTGGGCTAATGTTTTA+TGG + chr7_3:32971757-32971776 None:intergenic 40.0%
GTTCTTAATCTTAGGGAGCA+AGG + chr7_3:32971949-32971968 None:intergenic 40.0%
TGGTTGAACTTGAATGAGCA+AGG + chr7_3:32972000-32972019 None:intergenic 40.0%
TCTTGTCCCTGTGAAATATG+CGG + chr7_3:32972428-32972447 None:intergenic 40.0%
TCATCAATCATCACTCCGAA+TGG - chr7_3:32972448-32972467 Msa1101860:intron 40.0%
TCATCAATTGTGTTCTCAGC+AGG + chr7_3:32972491-32972510 None:intergenic 40.0%
AGATTCAGTCTTGGTACGTT+TGG - chr7_3:32972844-32972863 Msa1101860:intron 40.0%
AGCATCTATAGTCACAACCA+AGG + chr7_3:32972954-32972973 None:intergenic 40.0%
TGAAAATCCTTTGGTAGAGG+TGG - chr7_3:32973054-32973073 Msa1101860:intron 40.0%
CTGAGAACAATCTCCAAACA+TGG + chr7_3:32973207-32973226 None:intergenic 40.0%
GTTTGGAGATTGTTCTCAGT+AGG - chr7_3:32973208-32973227 Msa1101860:intron 40.0%
AGAACCAGATGGTGAAGGAA+TGG - chr7_3:32966112-32966131 Msa1101860:three_prime_UTR 45.0%
! GAGATTTGAAATGAGAGCCC+TGG + chr7_3:32966292-32966311 None:intergenic 45.0%
AACCGTCCCTTTACTCCTAT+TGG - chr7_3:32966364-32966383 Msa1101860:CDS 45.0%
AGCCAATAGGAGTAAAGGGA+CGG + chr7_3:32966369-32966388 None:intergenic 45.0%
GATGAAAACCTGGTTGCCAA+AGG + chr7_3:32966727-32966746 None:intergenic 45.0%
GCCATTAGAAAGGATGATCC+TGG + chr7_3:32967064-32967083 None:intergenic 45.0%
AACGGGTGTAGCCATTAGAA+AGG + chr7_3:32967074-32967093 None:intergenic 45.0%
TCTACCAAATTCCAACGGCT+TGG - chr7_3:32967529-32967548 Msa1101860:intron 45.0%
TATTGTAACCACCAAGCCGT+TGG + chr7_3:32967543-32967562 None:intergenic 45.0%
! TCCACCGGTTGTACTAAACT+CGG + chr7_3:32967716-32967735 None:intergenic 45.0%
GAAGATGGAAAAGGTGACCA+TGG - chr7_3:32967757-32967776 Msa1101860:intron 45.0%
GGGATCTAAGGATGACTATG+TGG - chr7_3:32968221-32968240 Msa1101860:intron 45.0%
! GATGACTATGTGGACTGTCA+AGG - chr7_3:32968231-32968250 Msa1101860:intron 45.0%
ATGCTCTCTCCCCAATATGT+AGG + chr7_3:32969309-32969328 None:intergenic 45.0%
TGACGTGGCAGTGATTAAGT+GGG + chr7_3:32969727-32969746 None:intergenic 45.0%
ATGACGTGGCAGTGATTAAG+TGG + chr7_3:32969728-32969747 None:intergenic 45.0%
! CTGTCATTTCACTTGTGGGT+TGG + chr7_3:32969780-32969799 None:intergenic 45.0%
GGGAATGAGAAGATGAAGAC+AGG + chr7_3:32969810-32969829 None:intergenic 45.0%
! CAATCTGAAACCCAAAGCAG+CGG + chr7_3:32969997-32970016 None:intergenic 45.0%
! GAGGGTAAAGAAGGTATGTG+AGG - chr7_3:32970793-32970812 Msa1101860:intron 45.0%
TCATTGCCACGTCACTAATC+AGG + chr7_3:32970925-32970944 None:intergenic 45.0%
!!! AATTTTAAATGATTAAATTT+TGG + chr7_3:32969693-32969712 None:intergenic 5.0%
!! ATGGTGATGGTGGTGATGGA+AGG - chr7_3:32966024-32966043 Msa1101860:three_prime_UTR 50.0%
!! TGATGGTGGTGATGGAAGGA+CGG - chr7_3:32966028-32966047 Msa1101860:three_prime_UTR 50.0%
ACCAGATGGTGAAGGAATGG+AGG - chr7_3:32966115-32966134 Msa1101860:three_prime_UTR 50.0%
TCCTCCATTCCTTCACCATC+TGG + chr7_3:32966119-32966138 None:intergenic 50.0%
AGATGGTGAAGGAATGGAGG+AGG - chr7_3:32966118-32966137 Msa1101860:three_prime_UTR 50.0%
AAGGAATGGAGGAGGAGGTT+TGG - chr7_3:32966126-32966145 Msa1101860:three_prime_UTR 50.0%
AAGGGACGGTTTCAGAACAG+AGG + chr7_3:32966355-32966374 None:intergenic 50.0%
TGCTGACCAAACACACACCA+AGG - chr7_3:32966423-32966442 Msa1101860:CDS 50.0%
GCTGACCAAACACACACCAA+GGG - chr7_3:32966424-32966443 Msa1101860:CDS 50.0%
! AACCCTAGGATTTTACCGCC+AGG - chr7_3:32966472-32966491 Msa1101860:CDS 50.0%
TGCCTGGCGGTAAAATCCTA+GGG + chr7_3:32966477-32966496 None:intergenic 50.0%
ATGCCTGGCGGTAAAATCCT+AGG + chr7_3:32966478-32966497 None:intergenic 50.0%
CTCTCTTTCCTTTGGCAACC+AGG - chr7_3:32966716-32966735 Msa1101860:CDS 50.0%
! ACCAAATTCCAACGGCTTGG+TGG - chr7_3:32967532-32967551 Msa1101860:intron 50.0%
ACCACCAAGCCGTTGGAATT+TGG + chr7_3:32967536-32967555 None:intergenic 50.0%
TCCGAGTTTAGTACAACCGG+TGG - chr7_3:32967712-32967731 Msa1101860:intron 50.0%
!! TACAACCGGTGGATTGCTGA+AGG - chr7_3:32967723-32967742 Msa1101860:intron 50.0%
TGAAGCCTTCAGCAATCCAC+CGG + chr7_3:32967731-32967750 None:intergenic 50.0%
GACGTGGCAGTGATTAAGTG+GGG + chr7_3:32969726-32969745 None:intergenic 50.0%
ACCTCACCTGATTAGTGACG+TGG - chr7_3:32970916-32970935 Msa1101860:intron 50.0%
TCTAGCGAATTCGAACGCCT+TGG - chr7_3:32972934-32972953 Msa1101860:intron 50.0%
TCAGTGTCCACCTCTACCAA+AGG + chr7_3:32973064-32973083 None:intergenic 50.0%
TGGTGAAGGAATGGAGGAGG+AGG - chr7_3:32966121-32966140 Msa1101860:three_prime_UTR 55.0%
TTACATGGACGGCTGGAACC+TGG + chr7_3:32966758-32966777 None:intergenic 55.0%
AGAGGCAACTGCCCCAACTA+CGG - chr7_3:32968702-32968721 Msa1101860:intron 55.0%
GTTCTTTACCCTCCTGTCGC+CGG - chr7_3:32969958-32969977 Msa1101860:intron 55.0%
! TCTGAAACCCAAAGCAGCGG+CGG + chr7_3:32969994-32970013 None:intergenic 55.0%
GCCACGTCACTAATCAGGTG+AGG + chr7_3:32970920-32970939 None:intergenic 55.0%
!! TGGTGGTGATGGAAGGACGG+TGG - chr7_3:32966031-32966050 Msa1101860:three_prime_UTR 60.0%
!! GGTGGTGATGGAAGGACGGT+GGG - chr7_3:32966032-32966051 Msa1101860:three_prime_UTR 60.0%
GGAGGAGGAGGTTTGGCATG+TGG - chr7_3:32966133-32966152 Msa1101860:three_prime_UTR 60.0%
AACCAGATCCGGCGACAGGA+GGG + chr7_3:32969969-32969988 None:intergenic 60.0%
! TGGTTCACCGCCGCTGCTTT+GGG - chr7_3:32969984-32970003 Msa1101860:intron 60.0%
! GTGATGGAAGGACGGTGGGC+TGG - chr7_3:32966036-32966055 Msa1101860:three_prime_UTR 65.0%
!! ATGGAAGGACGGTGGGCTGG+TGG - chr7_3:32966039-32966058 Msa1101860:three_prime_UTR 65.0%
TACCCTCCTGTCGCCGGATC+TGG - chr7_3:32969964-32969983 Msa1101860:intron 65.0%
GAACCAGATCCGGCGACAGG+AGG + chr7_3:32969970-32969989 None:intergenic 65.0%
GGTGAACCAGATCCGGCGAC+AGG + chr7_3:32969973-32969992 None:intergenic 65.0%
CAGCGGCGGTGAACCAGATC+CGG + chr7_3:32969980-32969999 None:intergenic 65.0%
CTGGTTCACCGCCGCTGCTT+TGG - chr7_3:32969983-32970002 Msa1101860:intron 65.0%
!! GAAGGACGGTGGGCTGGTGG+CGG - chr7_3:32966042-32966061 Msa1101860:three_prime_UTR 70.0%
!! GCTGGTGGCGGTGGAGGAGA+GGG - chr7_3:32966054-32966073 Msa1101860:three_prime_UTR 70.0%
GCGGTGGAGGAGAGGGTGGA+TGG - chr7_3:32966061-32966080 Msa1101860:three_prime_UTR 70.0%
!! GGCTGGTGGCGGTGGAGGAG+AGG - chr7_3:32966053-32966072 Msa1101860:three_prime_UTR 75.0%
! GGTGGCGGTGGAGGAGAGGG+TGG - chr7_3:32966057-32966076 Msa1101860:three_prime_UTR 75.0%
!!! GGACGGTGGGCTGGTGGCGG+TGG - chr7_3:32966045-32966064 Msa1101860:three_prime_UTR 80.0%
!!! CGGTGGGCTGGTGGCGGTGG+AGG - chr7_3:32966048-32966067 Msa1101860:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 32966024 32973450 32966024 ID=Msa1101860;Name=Msa1101860
chr7_3 mRNA 32966024 32973450 32966024 ID=Msa1101860-mRNA-1;Parent=Msa1101860;Name=Msa1101860-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0.25|0.75|0.66|0.75|4|312|362
chr7_3 exon 32966024 32967034 32966024 ID=Msa1101860-mRNA-1:exon:7146;Parent=Msa1101860-mRNA-1
chr7_3 exon 32971873 32972006 32971873 ID=Msa1101860-mRNA-1:exon:7145;Parent=Msa1101860-mRNA-1
chr7_3 exon 32972278 32972414 32972278 ID=Msa1101860-mRNA-1:exon:7144;Parent=Msa1101860-mRNA-1
chr7_3 exon 32973332 32973450 32973332 ID=Msa1101860-mRNA-1:exon:7143;Parent=Msa1101860-mRNA-1
chr7_3 CDS 32973332 32973450 32973332 ID=Msa1101860-mRNA-1:cds;Parent=Msa1101860-mRNA-1
chr7_3 CDS 32972278 32972414 32972278 ID=Msa1101860-mRNA-1:cds;Parent=Msa1101860-mRNA-1
chr7_3 CDS 32971873 32972006 32971873 ID=Msa1101860-mRNA-1:cds;Parent=Msa1101860-mRNA-1
chr7_3 CDS 32966336 32967034 32966336 ID=Msa1101860-mRNA-1:cds;Parent=Msa1101860-mRNA-1
chr7_3 three_prime_UTR 32966024 32966335 32966024 ID=Msa1101860-mRNA-1:three_prime_utr;Parent=Msa1101860-mRNA-1
Gene Sequence

>Msa1101860

ATGGTGATGGTGGTGATGGAAGGACGGTGGGCTGGTGGCGGTGGAGGAGAGGGTGGATGGTTTGAGATGAGACTGAGAAAGAAGATAAAGAACCAGATGGTGAAGGAATGGAGGAGGAGACCAGGATCATCCTTTCTAATGGCTACACCCGTTCTTGTTAATGATTCTGAGACAAAAACTGATGCAGCTAAAAAGGAATATAGCATAGTTCACTTCAATTATCACAACTATTATGGCATAGAAAACATATCAATAGATGTGTGTGTGAATGACATAAACTTTAATTGGTTTCCGAATTTTTCCACCTCTTTATTTGATCTACCAAATTCCAACGGCTTGGTGGTTACAATAGATCTCCCAGATTCTGTAGATTTAAAAGTTGAGTATAGGGGACAAGATCATCAATCATCACTCCGAATGGATTCTTTTTATTTTGTTCCTGCTGAGAACACAATTGATGATAGTGAAAAGGAATACAGTATTGTTCACTTCCAATATTCCAACAACAACGTCATAAAAAAAATATCAACTAGTCAAATTTATAAGCAAACACTATTTTCAATATTCAATTTCCTAAAACCTTACAAAATTAAAACCATAGAAGAAAATCTTTCAGTAGAGAAATACAAAGATGTGTATTTGCTATCAAGAGATGACATTAGAAGTCATAGAAGTAACTATAATTTTCTTCATATTGGGTTGGTACAATTTTCTATAGTTAATAGCTATCCATTTTCACAAGCAACACTTAATGTGTCAATTAGTTTGAGAGATTCTAAGTACCAAAAATTTGAAGATTCAGTCTTGGTACGTTTGGATTCAGATTTGTGTGAGGGTGACATAAAGTTTAATTGGTTTCCAAATTTCTCGGTACATTTGTCTGATCTAGCGAATTCGAACGCCTTGGTTGTGACTATAGATGCTCCAGATTGTCTATCTTTAGAAGTTAGGTATAGGGTTTGTTATAAATTATGGAAGAAATCTATTAAACTTGGTTATCTATTTGAAAATCCTTTGGTAGAGGTGGACACTGAGAAAACAAATGTTGTTATCCCCAAATCAAATAATAATGTTAATAATCAGGGTTAA
Protein sequence

>Msa1101860

MVMVVMEGRWAGGGGGEGGWFEMRLRKKIKNQMVKEWRRRPGSSFLMATPVLVNDSETKTDAAKKEYSIVHFNYHNYYGIENISIDVCVNDINFNWFPNFSTSLFDLPNSNGLVVTIDLPDSVDLKVEYRGQDHQSSLRMDSFYFVPAENTIDDSEKEYSIVHFQYSNNNVIKKISTSQIYKQTLFSIFNFLKPYKIKTIEENLSVEKYKDVYLLSRDDIRSHRSNYNFLHIGLVQFSIVNSYPFSQATLNVSISLRDSKYQKFEDSVLVRLDSDLCEGDIKFNWFPNFSVHLSDLANSNALVVTIDAPDCLSLEVRYRVCYKLWKKSIKLGYLFENPLVEVDTEKTNVVIPKSNNNVNNQG*