Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127820 | XP_013470262.1 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127820 | sp|Q9SEZ6|RNH2A_ARATH | 71.331 | 293 | 83 | 1 | 6 | 298 | 5 | 296 | 3.67e-164 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127820 | A0A072W210 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 602 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0127820 | 0.823828 | 1.122557e-53 | -8.615850e-47 |
| Msa0004920 | Msa0127820 | 0.800816 | 1.206773e-48 | -8.615850e-47 |
| Msa0008830 | Msa0127820 | 0.802117 | 6.532728e-49 | -8.615850e-47 |
| Msa0016670 | Msa0127820 | 0.834183 | 3.473195e-56 | -8.615850e-47 |
| Msa0032840 | Msa0127820 | -0.827584 | 1.443596e-54 | -8.615850e-47 |
| Msa0036430 | Msa0127820 | 0.816676 | 4.890782e-52 | -8.615850e-47 |
| Msa0044020 | Msa0127820 | 0.915052 | 9.304563e-85 | -8.615850e-47 |
| Msa0046750 | Msa0127820 | 0.821079 | 4.884856e-53 | -8.615850e-47 |
| Msa0068060 | Msa0127820 | 0.820151 | 7.979901e-53 | -8.615850e-47 |
| Msa0074320 | Msa0127820 | 0.803213 | 3.881357e-49 | -8.615850e-47 |
| Msa0076000 | Msa0127820 | 0.807163 | 5.781193e-50 | -8.615850e-47 |
| Msa0077200 | Msa0127820 | 0.810871 | 9.293398e-51 | -8.615850e-47 |
| Msa0090590 | Msa0127820 | 0.886367 | 3.636881e-72 | -8.615850e-47 |
| Msa0094120 | Msa0127820 | 0.812534 | 4.040187e-51 | -8.615850e-47 |
| Msa0105420 | Msa0127820 | 0.824861 | 6.418203e-54 | -8.615850e-47 |
| Msa0110970 | Msa0127820 | 0.829306 | 5.541706e-55 | -8.615850e-47 |
| Msa0114540 | Msa0127820 | -0.822515 | 2.273057e-53 | -8.615850e-47 |
| Msa0124340 | Msa0127820 | 0.827897 | 1.213634e-54 | -8.615850e-47 |
| Msa0124990 | Msa0127820 | 0.811445 | 6.976535e-51 | -8.615850e-47 |
| Msa0127820 | Msa0143380 | 0.835462 | 1.655105e-56 | -8.615850e-47 |
| Msa0127820 | Msa0143430 | 0.800204 | 1.608629e-48 | -8.615850e-47 |
| Msa0127820 | Msa0183830 | 0.892193 | 1.989453e-74 | -8.615850e-47 |
| Msa0127820 | Msa0186890 | 0.807402 | 5.143573e-50 | -8.615850e-47 |
| Msa0127820 | Msa0197930 | 0.813059 | 3.099824e-51 | -8.615850e-47 |
| Msa0127820 | Msa0203160 | 0.822851 | 1.899156e-53 | -8.615850e-47 |
| Msa0127820 | Msa0205850 | 0.800466 | 1.422713e-48 | -8.615850e-47 |
| Msa0127820 | Msa0219190 | 0.813934 | 1.990541e-51 | -8.615850e-47 |
| Msa0127820 | Msa0225740 | 0.819356 | 1.212789e-52 | -8.615850e-47 |
| Msa0127820 | Msa0227400 | 0.805315 | 1.416667e-49 | -8.615850e-47 |
| Msa0127820 | Msa0230550 | -0.825844 | 3.755490e-54 | -8.615850e-47 |
| Msa0127820 | Msa0235890 | 0.825289 | 5.085229e-54 | -8.615850e-47 |
| Msa0127820 | Msa0239450 | 0.813409 | 2.598056e-51 | -8.615850e-47 |
| Msa0127820 | Msa0239570 | 0.802317 | 5.942542e-49 | -8.615850e-47 |
| Msa0127820 | Msa0259560 | 0.812337 | 4.461029e-51 | -8.615850e-47 |
| Msa0127820 | Msa0264350 | 0.817639 | 2.970340e-52 | -8.615850e-47 |
| Msa0127820 | Msa0264570 | 0.835973 | 1.228083e-56 | -8.615850e-47 |
| Msa0127820 | Msa0287310 | 0.807270 | 5.487718e-50 | -8.615850e-47 |
| Msa0127820 | Msa0296760 | 0.804897 | 1.732658e-49 | -8.615850e-47 |
| Msa0127820 | Msa0308830 | 0.813318 | 2.719898e-51 | -8.615850e-47 |
| Msa0127820 | Msa0311860 | 0.804699 | 1.905195e-49 | -8.615850e-47 |
| Msa0127820 | Msa0314210 | 0.811318 | 7.434639e-51 | -8.615850e-47 |
| Msa0127820 | Msa0316850 | 0.810503 | 1.115923e-50 | -8.615850e-47 |
| Msa0127820 | Msa0317280 | 0.817895 | 2.601125e-52 | -8.615850e-47 |
| Msa0127820 | Msa0334040 | 0.801813 | 7.544216e-49 | -8.615850e-47 |
| Msa0127820 | Msa0355270 | 0.825777 | 3.895023e-54 | -8.615850e-47 |
| Msa0127820 | Msa0398640 | 0.807601 | 4.667424e-50 | -8.615850e-47 |
| Msa0127820 | Msa0402330 | 0.826183 | 3.119967e-54 | -8.615850e-47 |
| Msa0127820 | Msa0413450 | 0.819182 | 1.328451e-52 | -8.615850e-47 |
| Msa0127820 | Msa0419820 | 0.833394 | 5.468815e-56 | -8.615850e-47 |
| Msa0127820 | Msa0423360 | -0.808590 | 2.874705e-50 | -8.615850e-47 |
| Msa0127820 | Msa0426330 | 0.805815 | 1.112373e-49 | -8.615850e-47 |
| Msa0127820 | Msa0474950 | 0.805530 | 1.276780e-49 | -8.615850e-47 |
| Msa0127820 | Msa0505150 | 0.802603 | 5.187085e-49 | -8.615850e-47 |
| Msa0127820 | Msa0505770 | 0.802681 | 4.999213e-49 | -8.615850e-47 |
| Msa0127820 | Msa0509610 | 0.819146 | 1.353748e-52 | -8.615850e-47 |
| Msa0127820 | Msa0516320 | 0.803153 | 3.992618e-49 | -8.615850e-47 |
| Msa0127820 | Msa0521880 | 0.814028 | 1.897415e-51 | -8.615850e-47 |
| Msa0127820 | Msa0526890 | 0.828192 | 1.030680e-54 | -8.615850e-47 |
| Msa0127820 | Msa0541860 | 0.808712 | 2.706657e-50 | -8.615850e-47 |
| Msa0127820 | Msa0555910 | 0.807022 | 6.190421e-50 | -8.615850e-47 |
| Msa0127820 | Msa0560470 | 0.805604 | 1.231756e-49 | -8.615850e-47 |
| Msa0127820 | Msa0591770 | 0.807090 | 5.989907e-50 | -8.615850e-47 |
| Msa0127820 | Msa0604360 | 0.814124 | 1.807261e-51 | -8.615850e-47 |
| Msa0127820 | Msa0609450 | 0.815915 | 7.238034e-52 | -8.615850e-47 |
| Msa0127820 | Msa0619980 | 0.816311 | 5.903541e-52 | -8.615850e-47 |
| Msa0127820 | Msa0620990 | 0.809214 | 2.113107e-50 | -8.615850e-47 |
| Msa0127820 | Msa0623700 | 0.805626 | 1.219076e-49 | -8.615850e-47 |
| Msa0127820 | Msa0643220 | 0.802389 | 5.741326e-49 | -8.615850e-47 |
| Msa0127820 | Msa0650090 | 0.800333 | 1.513712e-48 | -8.615850e-47 |
| Msa0127820 | Msa0682900 | 0.802972 | 4.351980e-49 | -8.615850e-47 |
| Msa0127820 | Msa0692080 | 0.823639 | 1.243089e-53 | -8.615850e-47 |
| Msa0127820 | Msa0702340 | 0.809580 | 1.764239e-50 | -8.615850e-47 |
| Msa0127820 | Msa0702590 | 0.805637 | 1.212416e-49 | -8.615850e-47 |
| Msa0127820 | Msa0702660 | 0.809714 | 1.650428e-50 | -8.615850e-47 |
| Msa0127820 | Msa0703230 | 0.810854 | 9.372362e-51 | -8.615850e-47 |
| Msa0127820 | Msa0706370 | 0.821089 | 4.859397e-53 | -8.615850e-47 |
| Msa0127820 | Msa0708520 | 0.815531 | 8.815005e-52 | -8.615850e-47 |
| Msa0127820 | Msa0739120 | 0.806950 | 6.413886e-50 | -8.615850e-47 |
| Msa0127820 | Msa0741900 | 0.828750 | 7.557507e-55 | -8.615850e-47 |
| Msa0127820 | Msa0754720 | -0.806173 | 9.356615e-50 | -8.615850e-47 |
| Msa0127820 | Msa0756630 | -0.800124 | 1.669535e-48 | -8.615850e-47 |
| Msa0127820 | Msa0760380 | 0.835284 | 1.835486e-56 | -8.615850e-47 |
| Msa0127820 | Msa0810020 | 0.824272 | 8.829844e-54 | -8.615850e-47 |
| Msa0127820 | Msa0822990 | 0.833305 | 5.756091e-56 | -8.615850e-47 |
| Msa0127820 | Msa0840260 | 0.820642 | 6.156759e-53 | -8.615850e-47 |
| Msa0127820 | Msa0850960 | 0.800063 | 1.717678e-48 | -8.615850e-47 |
| Msa0127820 | Msa0853320 | 0.804611 | 1.988046e-49 | -8.615850e-47 |
| Msa0127820 | Msa0862100 | 0.808158 | 3.552659e-50 | -8.615850e-47 |
| Msa0127820 | Msa0863370 | 0.809466 | 1.865947e-50 | -8.615850e-47 |
| Msa0127820 | Msa0872310 | 0.819180 | 1.329882e-52 | -8.615850e-47 |
| Msa0127820 | Msa0876200 | 0.810471 | 1.133820e-50 | -8.615850e-47 |
| Msa0127820 | Msa0905550 | 0.828612 | 8.162407e-55 | -8.615850e-47 |
| Msa0127820 | Msa0930780 | 0.822133 | 2.787459e-53 | -8.615850e-47 |
| Msa0127820 | Msa0937550 | 0.805174 | 1.516340e-49 | -8.615850e-47 |
| Msa0127820 | Msa0937670 | 0.817266 | 3.604758e-52 | -8.615850e-47 |
| Msa0127820 | Msa0949960 | 0.806765 | 7.018008e-50 | -8.615850e-47 |
| Msa0127820 | Msa1012810 | 0.806056 | 9.902134e-50 | -8.615850e-47 |
| Msa0127820 | Msa1018790 | 0.823308 | 1.485359e-53 | -8.615850e-47 |
| Msa0127820 | Msa1033560 | 0.819334 | 1.226496e-52 | -8.615850e-47 |
| Msa0127820 | Msa1037920 | 0.807999 | 3.840634e-50 | -8.615850e-47 |
| Msa0127820 | Msa1040830 | 0.823066 | 1.692214e-53 | -8.615850e-47 |
| Msa0127820 | Msa1040890 | 0.828572 | 8.343376e-55 | -8.615850e-47 |
| Msa0127820 | Msa1041530 | 0.803260 | 3.795367e-49 | -8.615850e-47 |
| Msa0127820 | Msa1082700 | 0.827754 | 1.314033e-54 | -8.615850e-47 |
| Msa0127820 | Msa1083210 | 0.833613 | 4.822897e-56 | -8.615850e-47 |
| Msa0127820 | Msa1097640 | 0.836023 | 1.192733e-56 | -8.615850e-47 |
| Msa0127820 | Msa1126510 | 0.800120 | 1.672491e-48 | -8.615850e-47 |
| Msa0127820 | Msa1126770 | 0.802953 | 4.392859e-49 | -8.615850e-47 |
| Msa0127820 | Msa1127830 | 0.823140 | 1.625993e-53 | -8.615850e-47 |
| Msa0127820 | Msa1127890 | 0.817588 | 3.050122e-52 | -8.615850e-47 |
| Msa0127820 | Msa1129980 | 0.802984 | 4.326996e-49 | -8.615850e-47 |
| Msa0127820 | Msa1139810 | 0.843014 | 1.817375e-58 | -8.615850e-47 |
| Msa0127820 | Msa1160400 | 0.802811 | 4.700288e-49 | -8.615850e-47 |
| Msa0127820 | Msa1165870 | 0.800016 | 1.756369e-48 | -8.615850e-47 |
| Msa0127820 | Msa1174100 | 0.809358 | 1.968916e-50 | -8.615850e-47 |
| Msa0127820 | Msa1187840 | 0.829334 | 5.455592e-55 | -8.615850e-47 |
| Msa0127820 | Msa1217860 | 0.800329 | 1.516430e-48 | -8.615850e-47 |
| Msa0127820 | Msa1224840 | 0.807391 | 5.173211e-50 | -8.615850e-47 |
| Msa0127820 | Msa1252190 | 0.841929 | 3.526844e-58 | -8.615850e-47 |
| Msa0127820 | Msa1254610 | 0.802992 | 4.311677e-49 | -8.615850e-47 |
| Msa0127820 | Msa1254710 | 0.814469 | 1.516234e-51 | -8.615850e-47 |
| Msa0127820 | Msa1255040 | -0.806083 | 9.771085e-50 | -8.615850e-47 |
| Msa0127820 | Msa1283170 | 0.807323 | 5.347742e-50 | -8.615850e-47 |
| Msa0127820 | Msa1292830 | 0.843269 | 1.554634e-58 | -8.615850e-47 |
| Msa0127820 | Msa1307950 | 0.808515 | 2.981669e-50 | -8.615850e-47 |
| Msa0127820 | Msa1316780 | 0.806302 | 8.787644e-50 | -8.615850e-47 |
| Msa0127820 | Msa1316830 | 0.804753 | 1.857016e-49 | -8.615850e-47 |
| Msa0127820 | Msa1320740 | 0.810093 | 1.367738e-50 | -8.615850e-47 |
| Msa0127820 | Msa1343070 | 0.813855 | 2.071790e-51 | -8.615850e-47 |
| Msa0127820 | Msa1365150 | 0.804113 | 2.524052e-49 | -8.615850e-47 |
| Msa0127820 | Msa1365200 | 0.800296 | 1.540224e-48 | -8.615850e-47 |
| Msa0127820 | Msa1367880 | 0.803623 | 3.190682e-49 | -8.615850e-47 |
| Msa0127820 | Msa1373330 | 0.807409 | 5.125705e-50 | -8.615850e-47 |
| Msa0127820 | Msa1379990 | 0.801296 | 9.625902e-49 | -8.615850e-47 |
| Msa0127820 | Msa1390310 | 0.800471 | 1.419356e-48 | -8.615850e-47 |
| Msa0127820 | Msa1397810 | 0.809140 | 2.192092e-50 | -8.615850e-47 |
| Msa0127820 | Msa1404730 | 0.802252 | 6.128643e-49 | -8.615850e-47 |
| Msa0127820 | Msa1420060 | 0.816635 | 4.995081e-52 | -8.615850e-47 |
| Msa0127820 | Msa1422270 | 0.802637 | 5.104748e-49 | -8.615850e-47 |
| Msa0127820 | Msa1430240 | 0.805334 | 1.403533e-49 | -8.615850e-47 |
| Msa0127820 | Msa1459380 | 0.801860 | 7.376238e-49 | -8.615850e-47 |
| Msa0127820 | Msa1466990 | 0.808272 | 3.359844e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127820 | MtrunA17_Chr1g0210591 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127820 | AT2G25100.1 | 71.331 | 293 | 83 | 1 | 6 | 298 | 5 | 296 | 3.74e-165 | 461 |
| Msa0127820 | AT2G25100.2 | 66.212 | 293 | 79 | 2 | 6 | 298 | 5 | 277 | 3.04e-148 | 417 |
Find 83 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTGAAATTAAACAATT+TGG | 0.119349 | 1_3:+57415760 | Msa0127820:CDS |
| CTGCCATGGGCCTCGTTGAT+AGG | 0.233916 | 1_3:+57413507 | Msa0127820:CDS |
| TGTTTACTTCTTGAGCATTT+TGG | 0.237684 | 1_3:-57413359 | None:intergenic |
| TTGAAAGCCAATGATTCTAT+TGG | 0.257884 | 1_3:+57413298 | Msa0127820:CDS |
| CGTTGATAGGGTGCTCAAAA+TGG | 0.268094 | 1_3:+57413520 | Msa0127820:CDS |
| GATCACAAACATTCTATCTT+TGG | 0.271558 | 1_3:+57414198 | Msa0127820:CDS |
| GCAACCACAAATTTGATAGA+TGG | 0.310246 | 1_3:-57413828 | None:intergenic |
| TATTTCTTCGCTTCTCCTCT+TGG | 0.315790 | 1_3:-57415795 | None:intergenic |
| CAATTGAAATTAAACAATTT+GGG | 0.333217 | 1_3:+57415761 | Msa0127820:CDS |
| GGCATCGGAGGGTTGCATAA+TGG | 0.340560 | 1_3:+57412259 | Msa0127820:CDS |
| CAAGTGGTAAAGGGCGTTCT+AGG | 0.341183 | 1_3:+57415822 | Msa0127820:CDS |
| AACATTAGTCAGGTTTAGTT+GGG | 0.344847 | 1_3:+57414227 | Msa0127820:CDS |
| GTCCTTGGTCCTATGGTCTA+TGG | 0.350982 | 1_3:+57412308 | Msa0127820:CDS |
| CAAATTTGTGGTTGCAAAGA+AGG | 0.351422 | 1_3:+57413836 | Msa0127820:CDS |
| TCTAGCCAAGACTTGGTTGC+AGG | 0.363522 | 1_3:-57414174 | None:intergenic |
| ACTCAATACTAGTGCACATT+TGG | 0.366678 | 1_3:-57416015 | None:intergenic |
| AGAAAGAAAGAAAGGGGAAA+TGG | 0.369584 | 1_3:+57412208 | None:intergenic |
| GCATCGGAGGGTTGCATAAT+GGG | 0.375113 | 1_3:+57412260 | Msa0127820:CDS |
| ATCTGAAGCTGCTATGGTTC+CGG | 0.379212 | 1_3:+57412232 | Msa0127820:CDS |
| AGCTGCTATGGTTCCGGAAT+GGG | 0.380956 | 1_3:+57412238 | Msa0127820:CDS |
| CAACATTAGTCAGGTTTAGT+TGG | 0.397868 | 1_3:+57414226 | Msa0127820:CDS |
| ATAATGCAAAGACAACAATT+AGG | 0.398457 | 1_3:-57415895 | None:intergenic |
| ATTGATACAGTTGGAGATCC+AGG | 0.399985 | 1_3:+57413774 | Msa0127820:CDS |
| CAACCCTCCGATGCCCATTC+CGG | 0.402068 | 1_3:-57412251 | None:intergenic |
| CTACTCACCTCCGGGATATC+CGG | 0.410035 | 1_3:-57414058 | None:intergenic |
| GGTGGCAGCAATAATAATAA+TGG | 0.411127 | 1_3:+57415731 | Msa0127820:CDS |
| GATAACATTCACAGGAACTT+TGG | 0.418465 | 1_3:+57414033 | Msa0127820:CDS |
| CAACTAAACCTGACTAATGT+TGG | 0.422536 | 1_3:-57414225 | None:intergenic |
| AGGTCCTGTCCTTGGTCCTA+TGG | 0.426005 | 1_3:+57412301 | Msa0127820:CDS |
| GAGATCGAGCTATAAGAGAT+TGG | 0.427593 | 1_3:+57413992 | Msa0127820:CDS |
| AGCCCATCCAATAGAATCAT+TGG | 0.430568 | 1_3:-57413305 | None:intergenic |
| GAAATAGAATCAAGTGGTAA+AGG | 0.437381 | 1_3:+57415812 | Msa0127820:CDS |
| GAAAGAAAGAAAGGGGAAAT+GGG | 0.444376 | 1_3:+57412209 | None:intergenic |
| CAGGTTTATATTGATACAGT+TGG | 0.452563 | 1_3:+57413765 | Msa0127820:intron |
| TTCGCTTCTCCTCTTGGATG+TGG | 0.454880 | 1_3:-57415789 | None:intergenic |
| AAGGTGGCACTGAAGTCTTA+TGG | 0.459123 | 1_3:+57414271 | Msa0127820:CDS |
| AACTTTGGCTCCGGATATCC+CGG | 0.468879 | 1_3:+57414048 | Msa0127820:CDS |
| GTGATCTTCTAGCCAAGACT+TGG | 0.469330 | 1_3:-57414181 | None:intergenic |
| AAATAGAATCAAGTGGTAAA+GGG | 0.471476 | 1_3:+57415813 | Msa0127820:CDS |
| TGCCATGGGCCTCGTTGATA+GGG | 0.471507 | 1_3:+57413508 | Msa0127820:CDS |
| GTTGATAGGGTGCTCAAAAT+GGG | 0.472159 | 1_3:+57413521 | Msa0127820:CDS |
| AATACTAGTGCACATTTGGT+TGG | 0.473640 | 1_3:-57416011 | None:intergenic |
| ATACTTGCACCACTGACAAC+AGG | 0.477284 | 1_3:-57413873 | None:intergenic |
| TAGTGCACATTTGGTTGGAC+TGG | 0.482557 | 1_3:-57416006 | None:intergenic |
| GCTGGAAGAGGTCCTGTCCT+TGG | 0.487213 | 1_3:+57412293 | Msa0127820:CDS |
| AATGGGATCTGAAGCTGCTA+TGG | 0.497249 | 1_3:+57412226 | Msa0127820:exon |
| AGCTTCGCTTCATATTTCCC+TGG | 0.499923 | 1_3:-57413792 | None:intergenic |
| GGTTCCGGAATGGGCATCGG+AGG | 0.503038 | 1_3:+57412247 | Msa0127820:CDS |
| AGATCGAGCTATAAGAGATT+GGG | 0.506461 | 1_3:+57413993 | Msa0127820:CDS |
| TCTGAATGAAGTGATCGAAT+TGG | 0.513203 | 1_3:+57416089 | Msa0127820:three_prime_UTR |
| GACACTAAAAGAAGAGAAGA+GGG | 0.517003 | 1_3:+57413258 | Msa0127820:CDS |
| TAGATCCTGCAACCAAGTCT+TGG | 0.525753 | 1_3:+57414169 | Msa0127820:intron |
| AAGCTGCTATGGTTCCGGAA+TGG | 0.527575 | 1_3:+57412237 | Msa0127820:CDS |
| AAGCCAATGATTCTATTGGA+TGG | 0.528501 | 1_3:+57413302 | Msa0127820:CDS |
| TGCGAAACTCAAAGTAGCTA+AGG | 0.529377 | 1_3:-57412363 | None:intergenic |
| ATTCACAGGAACTTTGGCTC+CGG | 0.560322 | 1_3:+57414039 | Msa0127820:CDS |
| TATGGTTCCGGAATGGGCAT+CGG | 0.560760 | 1_3:+57412244 | Msa0127820:CDS |
| TTAGCTACTTTGAGTTTCGC+AGG | 0.563355 | 1_3:+57412365 | Msa0127820:CDS |
| GGAATCGACGAAGCTGGAAG+AGG | 0.571188 | 1_3:+57412281 | Msa0127820:CDS |
| AGTCTGCTGATAACATTCAC+AGG | 0.575679 | 1_3:+57414025 | Msa0127820:CDS |
| GTTCCGGAATGGGCATCGGA+GGG | 0.576240 | 1_3:+57412248 | Msa0127820:CDS |
| AGACACTAAAAGAAGAGAAG+AGG | 0.576756 | 1_3:+57413257 | Msa0127820:CDS |
| TGGTGCAAGTATAGTTGCAA+AGG | 0.593002 | 1_3:+57413884 | Msa0127820:CDS |
| TTGATACAGTTGGAGATCCA+GGG | 0.597039 | 1_3:+57413775 | Msa0127820:CDS |
| CACCCTATCAACGAGGCCCA+TGG | 0.597149 | 1_3:-57413510 | None:intergenic |
| AGCCAATGATTCTATTGGAT+GGG | 0.597314 | 1_3:+57413303 | Msa0127820:CDS |
| GATATCACATGACTCTGCCA+TGG | 0.604388 | 1_3:+57413493 | Msa0127820:CDS |
| AGTGCACATTTGGTTGGACT+GGG | 0.605393 | 1_3:-57416005 | None:intergenic |
| TATAAACAACCATAGACCAT+AGG | 0.606448 | 1_3:-57412317 | None:intergenic |
| AGTCTTTATCCTGTTGTCAG+TGG | 0.607604 | 1_3:+57413864 | Msa0127820:CDS |
| TGTTGATGTCATTGACCCAA+AGG | 0.610587 | 1_3:+57413327 | Msa0127820:CDS |
| ATATCACATGACTCTGCCAT+GGG | 0.613919 | 1_3:+57413494 | Msa0127820:CDS |
| ACATTAGTCAGGTTTAGTTG+GGG | 0.616439 | 1_3:+57414228 | Msa0127820:CDS |
| GCAATAATAATAATGGCAAG+AGG | 0.617191 | 1_3:+57415738 | Msa0127820:CDS |
| GAGTCTGACTTGGATGAAGA+TGG | 0.620122 | 1_3:+57415710 | Msa0127820:CDS |
| AGCGAAGAAATAGAATCAAG+TGG | 0.622154 | 1_3:+57415806 | Msa0127820:CDS |
| ATAATGGGAATCGACGAAGC+TGG | 0.629515 | 1_3:+57412275 | Msa0127820:CDS |
| TAGACCATAGGACCAAGGAC+AGG | 0.637946 | 1_3:-57412305 | None:intergenic |
| TCACTTCATTCAGATGTCCA+AGG | 0.642202 | 1_3:-57416080 | None:intergenic |
| TGGGTTTCACCACATCCAAG+AGG | 0.671053 | 1_3:+57415780 | Msa0127820:CDS |
| AACCATAGACCATAGGACCA+AGG | 0.685457 | 1_3:-57412310 | None:intergenic |
| TCTGACTTGGATGAAGATGG+TGG | 0.731629 | 1_3:+57415713 | Msa0127820:CDS |
| TTTGGCTCCGGATATCCCGG+AGG | 0.764877 | 1_3:+57414051 | Msa0127820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGAATTATAATTAAAAA+TGG | - | chr1_3:57412457-57412476 | None:intergenic | 10.0% |
| !! | TTCTAATTAAAATTGAAAAT+AGG | + | chr1_3:57414526-57414545 | Msa0127820:intron | 10.0% |
| !!! | TATTTGAAATTTTAGAATTT+TGG | + | chr1_3:57415934-57415953 | Msa0127820:three_prime_UTR | 10.0% |
| !!! | CATTTTAGTTACAATAAATA+TGG | + | chr1_3:57414129-57414148 | Msa0127820:intron | 15.0% |
| !!! | AGAAAAGTATATTAATTTTC+AGG | + | chr1_3:57415115-57415134 | Msa0127820:intron | 15.0% |
| !! | ATTAAATTCCATTATGTATA+TGG | + | chr1_3:57415587-57415606 | Msa0127820:intron | 15.0% |
| !! | TTAAATTCCATTATGTATAT+GGG | + | chr1_3:57415588-57415607 | Msa0127820:intron | 15.0% |
| !! | CAATTGAAATTAAACAATTT+GGG | + | chr1_3:57415761-57415780 | Msa0127820:CDS | 15.0% |
| !!! | TAATGAGTTGGATAAAAATA+TGG | + | chr1_3:57412993-57413012 | Msa0127820:intron | 20.0% |
| !! | CTACTATCATTAATTCATTA+TGG | - | chr1_3:57413154-57413173 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGCAAAACCAAA+AGG | - | chr1_3:57413398-57413417 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTCAATTTAATGA+TGG | + | chr1_3:57413424-57413443 | Msa0127820:intron | 20.0% |
| !!! | TTTTCCCAACATATTTTAAT+GGG | + | chr1_3:57413567-57413586 | Msa0127820:intron | 20.0% |
| !! | AGATGTGAAATGTATAATTT+GGG | + | chr1_3:57413737-57413756 | Msa0127820:intron | 20.0% |
| !!! | CAATAAATATGGTTATGTTT+TGG | + | chr1_3:57414140-57414159 | Msa0127820:intron | 20.0% |
| !!! | TTGATTTGATATTGTTATTC+TGG | - | chr1_3:57414889-57414908 | None:intergenic | 20.0% |
| !!! | TTATTTGAAACTTTTGTTTC+TGG | + | chr1_3:57414993-57415012 | Msa0127820:intron | 20.0% |
| !!! | TATTTGAAACTTTTGTTTCT+GGG | + | chr1_3:57414994-57415013 | Msa0127820:intron | 20.0% |
| !! | TCATTTGATAAGTATTAAGT+AGG | + | chr1_3:57415330-57415349 | Msa0127820:intron | 20.0% |
| !! | ATGAGAAATATATTGTTTGT+GGG | - | chr1_3:57415550-57415569 | None:intergenic | 20.0% |
| !! | TAAATTCCATTATGTATATG+GGG | + | chr1_3:57415589-57415608 | Msa0127820:intron | 20.0% |
| !! | CTTATTTATCTGTTAAAACT+TGG | + | chr1_3:57415674-57415693 | Msa0127820:intron | 20.0% |
| !! | GCAATTGAAATTAAACAATT+TGG | + | chr1_3:57415760-57415779 | Msa0127820:CDS | 20.0% |
| ! | TAATTAAAAATGGAAAGCTC+TGG | - | chr1_3:57412447-57412466 | None:intergenic | 25.0% |
| ! | AACAGTGGCAATAATTAAAA+AGG | - | chr1_3:57412518-57412537 | None:intergenic | 25.0% |
| ! | TAAACCATCAAATTCAATCT+GGG | + | chr1_3:57412588-57412607 | Msa0127820:intron | 25.0% |
| !! | AAAGTACTACTCAAGTTTAA+GGG | + | chr1_3:57412637-57412656 | Msa0127820:intron | 25.0% |
| !!! | TTCCTTGTTGTAATTTTAAC+AGG | + | chr1_3:57413450-57413469 | Msa0127820:intron | 25.0% |
| ! | TTCCTGTTAAAATTACAACA+AGG | - | chr1_3:57413455-57413474 | None:intergenic | 25.0% |
| ! | CATTAAAATATGTTGGGAAA+AGG | - | chr1_3:57413568-57413587 | None:intergenic | 25.0% |
| !!! | CTTTTCCCAACATATTTTAA+TGG | + | chr1_3:57413566-57413585 | Msa0127820:intron | 25.0% |
| ! | TCTTCCCATTAAAATATGTT+GGG | - | chr1_3:57413574-57413593 | None:intergenic | 25.0% |
| ! | TTCTTCCCATTAAAATATGT+TGG | - | chr1_3:57413575-57413594 | None:intergenic | 25.0% |
| ! | GAGATGTGAAATGTATAATT+TGG | + | chr1_3:57413736-57413755 | Msa0127820:intron | 25.0% |
| !! | TTTTCCATCTATCAAATTTG+TGG | + | chr1_3:57413824-57413843 | Msa0127820:CDS | 25.0% |
| !!! | TTGTTTTCTAAGGATTTGTT+TGG | + | chr1_3:57414343-57414362 | Msa0127820:intron | 25.0% |
| !!! | GTTTGGTTTCATAACATTTT+CGG | + | chr1_3:57414360-57414379 | Msa0127820:intron | 25.0% |
| !!! | TTTGGTTTCATAACATTTTC+GGG | + | chr1_3:57414361-57414380 | Msa0127820:intron | 25.0% |
| ! | AAAACAAACTCAAAATAAGG+TGG | - | chr1_3:57414418-57414437 | None:intergenic | 25.0% |
| ! | CTGAAAACAAACTCAAAATA+AGG | - | chr1_3:57414421-57414440 | None:intergenic | 25.0% |
| !! | TCAGTTTTCAAAACATTTTC+TGG | + | chr1_3:57414437-57414456 | Msa0127820:intron | 25.0% |
| !! | TTTTTCACTTCCTTAGTTTA+CGG | + | chr1_3:57414843-57414862 | Msa0127820:intron | 25.0% |
| ! | ATTCCAAAAATTACAAACGT+GGG | - | chr1_3:57414919-57414938 | None:intergenic | 25.0% |
| ! | AATTCCAAAAATTACAAACG+TGG | - | chr1_3:57414920-57414939 | None:intergenic | 25.0% |
| !! | ATGATTCTAGTTACTTAAGT+GGG | - | chr1_3:57415091-57415110 | None:intergenic | 25.0% |
| !! | AATGATTCTAGTTACTTAAG+TGG | - | chr1_3:57415092-57415111 | None:intergenic | 25.0% |
| ! | CTATAACATATCAACTATCA+AGG | - | chr1_3:57415198-57415217 | None:intergenic | 25.0% |
| !! | CTTGATAGTTGATATGTTAT+AGG | + | chr1_3:57415196-57415215 | Msa0127820:intron | 25.0% |
| ! | TGAGAAATATATTGTTTGTG+GGG | - | chr1_3:57415549-57415568 | None:intergenic | 25.0% |
| ! | CATGAGAAATATATTGTTTG+TGG | - | chr1_3:57415551-57415570 | None:intergenic | 25.0% |
| ! | ATATTTCTCATGAAAGATGA+AGG | + | chr1_3:57415559-57415578 | Msa0127820:intron | 25.0% |
| ! | TAACACTTGGAACATAAAAA+TGG | - | chr1_3:57415637-57415656 | None:intergenic | 25.0% |
| !! | TAAAACTTGGACTTTTTGAT+AGG | + | chr1_3:57415687-57415706 | Msa0127820:intron | 25.0% |
| !! | AAAACTTGGACTTTTTGATA+GGG | + | chr1_3:57415688-57415707 | Msa0127820:intron | 25.0% |
| ! | AAATAGAATCAAGTGGTAAA+GGG | + | chr1_3:57415813-57415832 | Msa0127820:CDS | 25.0% |
| !!! | ATCATTTTTAGAAATGAGTG+AGG | - | chr1_3:57415874-57415893 | None:intergenic | 25.0% |
| ! | ATAATGCAAAGACAACAATT+AGG | - | chr1_3:57415898-57415917 | None:intergenic | 25.0% |
| !!! | TGTTGAATTTTAATTCACCT+TGG | + | chr1_3:57416063-57416082 | Msa0127820:three_prime_UTR | 25.0% |
| TATAAACAACCATAGACCAT+AGG | - | chr1_3:57412320-57412339 | None:intergenic | 30.0% | |
| !!! | TCAAAGTAGCTAAGGTTTTT+TGG | - | chr1_3:57412358-57412377 | None:intergenic | 30.0% |
| GTAAACCATCAAATTCAATC+TGG | + | chr1_3:57412587-57412606 | Msa0127820:intron | 30.0% | |
| !! | GAAAGTACTACTCAAGTTTA+AGG | + | chr1_3:57412636-57412655 | Msa0127820:intron | 30.0% |
| ATGACATTAAAGAGAGAGTT+CGG | + | chr1_3:57412805-57412824 | Msa0127820:intron | 30.0% | |
| AGCACCTATATTAGAAAAGA+TGG | + | chr1_3:57412830-57412849 | Msa0127820:intron | 30.0% | |
| ACCTATATTAGAAAAGATGG+TGG | + | chr1_3:57412833-57412852 | Msa0127820:intron | 30.0% | |
| ! | TCCACCATCTTTTCTAATAT+AGG | - | chr1_3:57412837-57412856 | None:intergenic | 30.0% |
| AGATCTAGAGATTAATGAGT+TGG | + | chr1_3:57412981-57413000 | Msa0127820:intron | 30.0% | |
| ! | TGGTATATGATAGAGCATTA+TGG | + | chr1_3:57413013-57413032 | Msa0127820:intron | 30.0% |
| CTTATCCCACTAAATAGAAT+CGG | - | chr1_3:57413058-57413077 | None:intergenic | 30.0% | |
| TTGAAAGCCAATGATTCTAT+TGG | + | chr1_3:57413298-57413317 | Msa0127820:CDS | 30.0% | |
| ! | TGTTTACTTCTTGAGCATTT+TGG | - | chr1_3:57413362-57413381 | None:intergenic | 30.0% |
| ! | ATCCATACGACATATTTTGT+TGG | - | chr1_3:57413657-57413676 | None:intergenic | 30.0% |
| TACGCTTCTTATAAGTACTT+GGG | + | chr1_3:57413680-57413699 | Msa0127820:intron | 30.0% | |
| CAGGTTTATATTGATACAGT+TGG | + | chr1_3:57413765-57413784 | Msa0127820:intron | 30.0% | |
| ! | AACCTTTAATCCAACCTTTT+AGG | + | chr1_3:57413963-57413982 | Msa0127820:intron | 30.0% |
| GATCACAAACATTCTATCTT+TGG | + | chr1_3:57414198-57414217 | Msa0127820:CDS | 30.0% | |
| AACATTAGTCAGGTTTAGTT+GGG | + | chr1_3:57414227-57414246 | Msa0127820:CDS | 30.0% | |
| !!! | ACTTGCAGCTCTTATTTTAA+AGG | + | chr1_3:57414252-57414271 | Msa0127820:CDS | 30.0% |
| AAATCCTTAGAAAACAAGTG+CGG | - | chr1_3:57414340-57414359 | None:intergenic | 30.0% | |
| AATGAAAACAGAAACCAAAG+AGG | + | chr1_3:57414563-57414582 | Msa0127820:intron | 30.0% | |
| CTGAACAGAACAGTATAAAA+AGG | - | chr1_3:57414601-57414620 | None:intergenic | 30.0% | |
| GCAGTATGTCAACATTAATA+TGG | - | chr1_3:57414711-57414730 | None:intergenic | 30.0% | |
| ATTAATGTTGACATACTGCT+AGG | + | chr1_3:57414712-57414731 | Msa0127820:intron | 30.0% | |
| ! | TTTTCACTTCCTTAGTTTAC+GGG | + | chr1_3:57414844-57414863 | Msa0127820:intron | 30.0% |
| AAAAATTACAAACGTGGGAT+TGG | - | chr1_3:57414914-57414933 | None:intergenic | 30.0% | |
| ! | AATCCCACGTTTGTAATTTT+TGG | + | chr1_3:57414913-57414932 | Msa0127820:intron | 30.0% |
| AACATGAAGTTAGTGGAATT+TGG | - | chr1_3:57415056-57415075 | None:intergenic | 30.0% | |
| ATTGGATAACATGAAGTTAG+TGG | - | chr1_3:57415063-57415082 | None:intergenic | 30.0% | |
| ! | TGATTCTAGTTACTTAAGTG+GGG | - | chr1_3:57415090-57415109 | None:intergenic | 30.0% |
| !! | AAAAAAGTGACTTGTTTCTG+TGG | - | chr1_3:57415269-57415288 | None:intergenic | 30.0% |
| ATCTTTCAAAGTTACTTGTG+AGG | + | chr1_3:57415293-57415312 | Msa0127820:intron | 30.0% | |
| !! | AAAGGCACTGCAAAAAATAT+AGG | - | chr1_3:57415362-57415381 | None:intergenic | 30.0% |
| TTTCCTTTGTTGACAACAAA+AGG | - | chr1_3:57415380-57415399 | None:intergenic | 30.0% | |
| AAATATATTGTTTGTGGGGT+GGG | - | chr1_3:57415545-57415564 | None:intergenic | 30.0% | |
| ! | AGTTTTCCCCATATACATAA+TGG | - | chr1_3:57415598-57415617 | None:intergenic | 30.0% |
| GCAATAATAATAATGGCAAG+AGG | + | chr1_3:57415738-57415757 | Msa0127820:CDS | 30.0% | |
| GAAATAGAATCAAGTGGTAA+AGG | + | chr1_3:57415812-57415831 | Msa0127820:CDS | 30.0% | |
| !!! | AGTAGCTAAGGTTTTTTGGT+AGG | - | chr1_3:57412354-57412373 | None:intergenic | 35.0% |
| TGAAGTTAAGAGAAGAGAGT+AGG | - | chr1_3:57412393-57412412 | None:intergenic | 35.0% | |
| TTCAACCGACACATAGAAAT+AGG | + | chr1_3:57412556-57412575 | Msa0127820:intron | 35.0% | |
| !! | CATCTCCTATTTCTATGTGT+CGG | - | chr1_3:57412564-57412583 | None:intergenic | 35.0% |
| TGACATTAAAGAGAGAGTTC+GGG | + | chr1_3:57412806-57412825 | Msa0127820:intron | 35.0% | |
| !! | TAGAAAAGATGGTGGAAACT+AGG | + | chr1_3:57412841-57412860 | Msa0127820:intron | 35.0% |
| AGACTCGTAGATTTGTACTA+AGG | + | chr1_3:57412891-57412910 | Msa0127820:intron | 35.0% | |
| AAGGAGAGTAGATCAAATGA+AGG | + | chr1_3:57412910-57412929 | Msa0127820:intron | 35.0% | |
| CGATTCTATTTAGTGGGATA+AGG | + | chr1_3:57413056-57413075 | Msa0127820:intron | 35.0% | |
| TGTCACATTTGCATCTTTGT+TGG | + | chr1_3:57413223-57413242 | Msa0127820:intron | 35.0% | |
| AGACACTAAAAGAAGAGAAG+AGG | + | chr1_3:57413257-57413276 | Msa0127820:CDS | 35.0% | |
| GACACTAAAAGAAGAGAAGA+GGG | + | chr1_3:57413258-57413277 | Msa0127820:CDS | 35.0% | |
| AAGCCAATGATTCTATTGGA+TGG | + | chr1_3:57413302-57413321 | Msa0127820:CDS | 35.0% | |
| AGCCAATGATTCTATTGGAT+GGG | + | chr1_3:57413303-57413322 | Msa0127820:CDS | 35.0% | |
| AAGCAAAACCAAAAGGACTA+AGG | - | chr1_3:57413391-57413410 | None:intergenic | 35.0% | |
| TGCCAACAAAATATGTCGTA+TGG | + | chr1_3:57413652-57413671 | Msa0127820:intron | 35.0% | |
| GTACGCTTCTTATAAGTACT+TGG | + | chr1_3:57413679-57413698 | Msa0127820:intron | 35.0% | |
| ATGTATAATTTGGGCTCTTC+AGG | + | chr1_3:57413746-57413765 | Msa0127820:intron | 35.0% | |
| GCAACCACAAATTTGATAGA+TGG | - | chr1_3:57413831-57413850 | None:intergenic | 35.0% | |
| CAAATTTGTGGTTGCAAAGA+AGG | + | chr1_3:57413836-57413855 | Msa0127820:CDS | 35.0% | |
| TTAGTGCAGGAAATTCTACA+CGG | - | chr1_3:57413922-57413941 | None:intergenic | 35.0% | |
| GATTAAAGGTTGCATGTAGA+CGG | - | chr1_3:57413954-57413973 | None:intergenic | 35.0% | |
| GACCTAAAAGGTTGGATTAA+AGG | - | chr1_3:57413968-57413987 | None:intergenic | 35.0% | |
| AGATCGAGCTATAAGAGATT+GGG | + | chr1_3:57413993-57414012 | Msa0127820:CDS | 35.0% | |
| GATAACATTCACAGGAACTT+TGG | + | chr1_3:57414033-57414052 | Msa0127820:CDS | 35.0% | |
| !! | TTGGTTTTCCAACATTAGTC+AGG | + | chr1_3:57414217-57414236 | Msa0127820:CDS | 35.0% |
| CAACTAAACCTGACTAATGT+TGG | - | chr1_3:57414228-57414247 | None:intergenic | 35.0% | |
| CAACATTAGTCAGGTTTAGT+TGG | + | chr1_3:57414226-57414245 | Msa0127820:CDS | 35.0% | |
| ACATTAGTCAGGTTTAGTTG+GGG | + | chr1_3:57414228-57414247 | Msa0127820:CDS | 35.0% | |
| !!! | TGCAGCTCTTATTTTAAAGG+TGG | + | chr1_3:57414255-57414274 | Msa0127820:CDS | 35.0% |
| !! | TATACCGCACTTGTTTTCTA+AGG | + | chr1_3:57414333-57414352 | Msa0127820:intron | 35.0% |
| TTTGTTTGCCATACTTTCCA+CGG | + | chr1_3:57414638-57414657 | Msa0127820:intron | 35.0% | |
| !!! | TTTTTGGAATTTGCTCCTCT+TGG | + | chr1_3:57414929-57414948 | Msa0127820:intron | 35.0% |
| !!! | TTTTGGAATTTGCTCCTCTT+GGG | + | chr1_3:57414930-57414949 | Msa0127820:intron | 35.0% |
| !! | AATTACTTTTACAGCCCAAG+AGG | - | chr1_3:57414947-57414966 | None:intergenic | 35.0% |
| ! | ATTCTAGTTACTTAAGTGGG+GGG | - | chr1_3:57415088-57415107 | None:intergenic | 35.0% |
| ! | GATTCTAGTTACTTAAGTGG+GGG | - | chr1_3:57415089-57415108 | None:intergenic | 35.0% |
| AGTGAAATAGTCCTTGAGAA+AGG | + | chr1_3:57415169-57415188 | Msa0127820:intron | 35.0% | |
| TATCAAGGATACCTTTCTCA+AGG | - | chr1_3:57415183-57415202 | None:intergenic | 35.0% | |
| GTTGTGAAAATAGCACAAGT+TGG | - | chr1_3:57415225-57415244 | None:intergenic | 35.0% | |
| TCAATAATCCTGAAAGCTGT+AGG | + | chr1_3:57415441-57415460 | Msa0127820:intron | 35.0% | |
| AAAGCTGTAGGTATTATGCT+TGG | + | chr1_3:57415453-57415472 | Msa0127820:intron | 35.0% | |
| CAAAGTTTGTAAGAGAAGAC+TGG | - | chr1_3:57415492-57415511 | None:intergenic | 35.0% | |
| TTGAAGCATGAACAATGCAT+GGG | + | chr1_3:57415515-57415534 | Msa0127820:intron | 35.0% | |
| AATATATTGTTTGTGGGGTG+GGG | - | chr1_3:57415544-57415563 | None:intergenic | 35.0% | |
| GAAATATATTGTTTGTGGGG+TGG | - | chr1_3:57415546-57415565 | None:intergenic | 35.0% | |
| GGTGGCAGCAATAATAATAA+TGG | + | chr1_3:57415731-57415750 | Msa0127820:CDS | 35.0% | |
| AGCGAAGAAATAGAATCAAG+TGG | + | chr1_3:57415806-57415825 | Msa0127820:CDS | 35.0% | |
| AATACTAGTGCACATTTGGT+TGG | - | chr1_3:57416014-57416033 | None:intergenic | 35.0% | |
| ACTCAATACTAGTGCACATT+TGG | - | chr1_3:57416018-57416037 | None:intergenic | 35.0% | |
| TCTGAATGAAGTGATCGAAT+TGG | + | chr1_3:57416089-57416108 | Msa0127820:three_prime_UTR | 35.0% | |
| !!! | AAGGTTTTTTGGTAGGAGAG+AGG | - | chr1_3:57412347-57412366 | None:intergenic | 40.0% |
| TGCGAAACTCAAAGTAGCTA+AGG | - | chr1_3:57412366-57412385 | None:intergenic | 40.0% | |
| ! | TTAGCTACTTTGAGTTTCGC+AGG | + | chr1_3:57412365-57412384 | Msa0127820:CDS | 40.0% |
| ! | AAAATGGAAAGCTCTGGCAA+TGG | - | chr1_3:57412441-57412460 | None:intergenic | 40.0% |
| TTATTGCCACTGTTTACGTG+TGG | + | chr1_3:57412524-57412543 | Msa0127820:intron | 40.0% | |
| ATACAACCACACGTAAACAG+TGG | - | chr1_3:57412533-57412552 | None:intergenic | 40.0% | |
| ACCATCAAATTCAATCTGGG+TGG | + | chr1_3:57412591-57412610 | Msa0127820:intron | 40.0% | |
| ACCACCCAGATTGAATTTGA+TGG | - | chr1_3:57412595-57412614 | None:intergenic | 40.0% | |
| TTCAATCTGGGTGGTTGAAA+TGG | + | chr1_3:57412600-57412619 | Msa0127820:intron | 40.0% | |
| ATGTTGTATGGGACAGTGTT+GGG | + | chr1_3:57412682-57412701 | Msa0127820:intron | 40.0% | |
| CTGAGATGAGAATGTTGCAT+TGG | + | chr1_3:57412745-57412764 | Msa0127820:intron | 40.0% | |
| !! | AGATGGTGGAAACTAGGATT+AGG | + | chr1_3:57412847-57412866 | Msa0127820:intron | 40.0% |
| AAGGATAGTCAGATCACTAG+AGG | + | chr1_3:57412929-57412948 | Msa0127820:intron | 40.0% | |
| ! | TGCAGCCGATTCTATTTAGT+GGG | + | chr1_3:57413050-57413069 | Msa0127820:intron | 40.0% |
| !! | TATGTAGCATTGACACAGAC+AGG | - | chr1_3:57413117-57413136 | None:intergenic | 40.0% |
| AGCCCATCCAATAGAATCAT+TGG | - | chr1_3:57413308-57413327 | None:intergenic | 40.0% | |
| TGTTGATGTCATTGACCCAA+AGG | + | chr1_3:57413327-57413346 | Msa0127820:CDS | 40.0% | |
| ! | TTTTGGCAGAGAGTTCCTTT+GGG | - | chr1_3:57413345-57413364 | None:intergenic | 40.0% |
| !! | ATTTTGGCAGAGAGTTCCTT+TGG | - | chr1_3:57413346-57413365 | None:intergenic | 40.0% |
| ! | CAAACAGACCTTAGTCCTTT+TGG | + | chr1_3:57413380-57413399 | Msa0127820:intron | 40.0% |
| ATATCACATGACTCTGCCAT+GGG | + | chr1_3:57413494-57413513 | Msa0127820:CDS | 40.0% | |
| ! | GTTGATAGGGTGCTCAAAAT+GGG | + | chr1_3:57413521-57413540 | Msa0127820:CDS | 40.0% |
| !!! | AATGGGAGTGCTTTTAACTG+AGG | + | chr1_3:57413538-57413557 | Msa0127820:CDS | 40.0% |
| ! | TCTGAAGTCATGTTAGAGCT+GGG | - | chr1_3:57413603-57413622 | None:intergenic | 40.0% |
| ! | ATCTGAAGTCATGTTAGAGC+TGG | - | chr1_3:57413604-57413623 | None:intergenic | 40.0% |
| ATTGATACAGTTGGAGATCC+AGG | + | chr1_3:57413774-57413793 | Msa0127820:CDS | 40.0% | |
| TTGATACAGTTGGAGATCCA+GGG | + | chr1_3:57413775-57413794 | Msa0127820:CDS | 40.0% | |
| AGTCTTTATCCTGTTGTCAG+TGG | + | chr1_3:57413864-57413883 | Msa0127820:CDS | 40.0% | |
| TGGTGCAAGTATAGTTGCAA+AGG | + | chr1_3:57413884-57413903 | Msa0127820:CDS | 40.0% | |
| TAGTGCAGGAAATTCTACAC+GGG | - | chr1_3:57413921-57413940 | None:intergenic | 40.0% | |
| ACGGTAAAACTTCTTAGTGC+AGG | - | chr1_3:57413935-57413954 | None:intergenic | 40.0% | |
| TCTCTTGTGACCTAAAAGGT+TGG | - | chr1_3:57413976-57413995 | None:intergenic | 40.0% | |
| TCGATCTCTTGTGACCTAAA+AGG | - | chr1_3:57413980-57413999 | None:intergenic | 40.0% | |
| GAGATCGAGCTATAAGAGAT+TGG | + | chr1_3:57413992-57414011 | Msa0127820:CDS | 40.0% | |
| AGTCTGCTGATAACATTCAC+AGG | + | chr1_3:57414025-57414044 | Msa0127820:CDS | 40.0% | |
| GTATACAGTCACAGAATGCA+TGG | - | chr1_3:57414318-57414337 | None:intergenic | 40.0% | |
| AGCAGTTAAGCTGCTTATGA+TGG | - | chr1_3:57414750-57414769 | None:intergenic | 40.0% | |
| ATCTTGAAGCCCGTAAACTA+AGG | - | chr1_3:57414856-57414875 | None:intergenic | 40.0% | |
| TTACTTAAGTGGGGGGAAAT+TGG | - | chr1_3:57415081-57415100 | None:intergenic | 40.0% | |
| !! | GTGCCTTTTGTTGTCAACAA+AGG | + | chr1_3:57415374-57415393 | Msa0127820:intron | 40.0% |
| GCATAATACCTACAGCTTTC+AGG | - | chr1_3:57415452-57415471 | None:intergenic | 40.0% | |
| CTTGAAGCATGAACAATGCA+TGG | + | chr1_3:57415514-57415533 | Msa0127820:intron | 40.0% | |
| ATATATTGTTTGTGGGGTGG+GGG | - | chr1_3:57415543-57415562 | None:intergenic | 40.0% | |
| ! | TTTTGATAGGGAGTCTGACT+TGG | + | chr1_3:57415700-57415719 | Msa0127820:intron | 40.0% |
| TATTTCTTCGCTTCTCCTCT+TGG | - | chr1_3:57415798-57415817 | None:intergenic | 40.0% | |
| !!! | GTTCTAGGTTTTTTCAGGCT+CGG | + | chr1_3:57415837-57415856 | Msa0127820:CDS | 40.0% |
| TCACTTCATTCAGATGTCCA+AGG | - | chr1_3:57416083-57416102 | None:intergenic | 40.0% | |
| ! | AATGGGATCTGAAGCTGCTA+TGG | + | chr1_3:57412226-57412245 | Msa0127820:exon | 45.0% |
| ! | ATCTGAAGCTGCTATGGTTC+CGG | + | chr1_3:57412232-57412251 | Msa0127820:CDS | 45.0% |
| ! | ATAATGGGAATCGACGAAGC+TGG | + | chr1_3:57412275-57412294 | Msa0127820:CDS | 45.0% |
| AACCATAGACCATAGGACCA+AGG | - | chr1_3:57412313-57412332 | None:intergenic | 45.0% | |
| AATCTGGGTGGTTGAAATGG+TGG | + | chr1_3:57412603-57412622 | Msa0127820:intron | 45.0% | |
| ! | CCATACAACATCGTTGGTCT+CGG | - | chr1_3:57412673-57412692 | None:intergenic | 45.0% |
| CGAGACCAACGATGTTGTAT+GGG | + | chr1_3:57412671-57412690 | Msa0127820:intron | 45.0% | |
| ACTGTCCCATACAACATCGT+TGG | - | chr1_3:57412679-57412698 | None:intergenic | 45.0% | |
| GATGTTGTATGGGACAGTGT+TGG | + | chr1_3:57412681-57412700 | Msa0127820:intron | 45.0% | |
| TGGTGGAAACTAGGATTAGG+TGG | + | chr1_3:57412850-57412869 | Msa0127820:intron | 45.0% | |
| ! | GTGCAGCCGATTCTATTTAG+TGG | + | chr1_3:57413049-57413068 | Msa0127820:intron | 45.0% |
| GATATCACATGACTCTGCCA+TGG | + | chr1_3:57413493-57413512 | Msa0127820:CDS | 45.0% | |
| ! | TTTTGAGCACCCTATCAACG+AGG | - | chr1_3:57413520-57413539 | None:intergenic | 45.0% |
| ! | CGTTGATAGGGTGCTCAAAA+TGG | + | chr1_3:57413520-57413539 | Msa0127820:CDS | 45.0% |
| AGTCATGTTAGAGCTGGGAA+AGG | - | chr1_3:57413598-57413617 | None:intergenic | 45.0% | |
| AGCTTCGCTTCATATTTCCC+TGG | - | chr1_3:57413795-57413814 | None:intergenic | 45.0% | |
| ATACTTGCACCACTGACAAC+AGG | - | chr1_3:57413876-57413895 | None:intergenic | 45.0% | |
| AAATTCTACACGGGAGAGTG+AGG | - | chr1_3:57413912-57413931 | None:intergenic | 45.0% | |
| ! | ATTCACAGGAACTTTGGCTC+CGG | + | chr1_3:57414039-57414058 | Msa0127820:CDS | 45.0% |
| TAGATCCTGCAACCAAGTCT+TGG | + | chr1_3:57414169-57414188 | Msa0127820:intron | 45.0% | |
| GTGATCTTCTAGCCAAGACT+TGG | - | chr1_3:57414184-57414203 | None:intergenic | 45.0% | |
| ! | AAGGTGGCACTGAAGTCTTA+TGG | + | chr1_3:57414271-57414290 | Msa0127820:CDS | 45.0% |
| CAAACACACCGTGGAAAGTA+TGG | - | chr1_3:57414649-57414668 | None:intergenic | 45.0% | |
| ! | GTTTCTGTGGTGCTAAGATC+AGG | - | chr1_3:57415256-57415275 | None:intergenic | 45.0% |
| TATATTGTTTGTGGGGTGGG+GGG | - | chr1_3:57415542-57415561 | None:intergenic | 45.0% | |
| TGTTCCAAGTGTTACGTGCT+AGG | + | chr1_3:57415643-57415662 | Msa0127820:intron | 45.0% | |
| !! | GAGTCTGACTTGGATGAAGA+TGG | + | chr1_3:57415710-57415729 | Msa0127820:CDS | 45.0% |
| !! | TCTGACTTGGATGAAGATGG+TGG | + | chr1_3:57415713-57415732 | Msa0127820:CDS | 45.0% |
| !!! | AGGGCGTTCTAGGTTTTTTC+AGG | + | chr1_3:57415832-57415851 | Msa0127820:CDS | 45.0% |
| AGTGCACATTTGGTTGGACT+GGG | - | chr1_3:57416008-57416027 | None:intergenic | 45.0% | |
| TAGTGCACATTTGGTTGGAC+TGG | - | chr1_3:57416009-57416028 | None:intergenic | 45.0% | |
| !! | AAATTAAATAAAAGAATAAA+TGG | - | chr1_3:57414820-57414839 | None:intergenic | 5.0% |
| AAGCTGCTATGGTTCCGGAA+TGG | + | chr1_3:57412237-57412256 | Msa0127820:CDS | 50.0% | |
| AGCTGCTATGGTTCCGGAAT+GGG | + | chr1_3:57412238-57412257 | Msa0127820:CDS | 50.0% | |
| TATGGTTCCGGAATGGGCAT+CGG | + | chr1_3:57412244-57412263 | Msa0127820:CDS | 50.0% | |
| GCATCGGAGGGTTGCATAAT+GGG | + | chr1_3:57412260-57412279 | Msa0127820:CDS | 50.0% | |
| TAGACCATAGGACCAAGGAC+AGG | - | chr1_3:57412308-57412327 | None:intergenic | 50.0% | |
| GTCCTTGGTCCTATGGTCTA+TGG | + | chr1_3:57412308-57412327 | Msa0127820:CDS | 50.0% | |
| CCGAGACCAACGATGTTGTA+TGG | + | chr1_3:57412670-57412689 | Msa0127820:intron | 50.0% | |
| AGTCAGATCACTAGAGGCAG+AGG | + | chr1_3:57412935-57412954 | Msa0127820:intron | 50.0% | |
| ACTAGAGGCAGAGGAGGATT+AGG | + | chr1_3:57412944-57412963 | Msa0127820:intron | 50.0% | |
| ! | AACTTTGGCTCCGGATATCC+CGG | + | chr1_3:57414048-57414067 | Msa0127820:CDS | 50.0% |
| AGTCATGACCTACTCACCTC+CGG | - | chr1_3:57414070-57414089 | None:intergenic | 50.0% | |
| ! | TCTAGCCAAGACTTGGTTGC+AGG | - | chr1_3:57414177-57414196 | None:intergenic | 50.0% |
| GGAAAAACGCAGAGCCTCTT+TGG | - | chr1_3:57414580-57414599 | None:intergenic | 50.0% | |
| TTCCACGGTGTGTTTGAGCT+AGG | + | chr1_3:57414653-57414672 | Msa0127820:intron | 50.0% | |
| TGTGTTTGAGCTAGGCTGGT+AGG | + | chr1_3:57414661-57414680 | Msa0127820:intron | 50.0% | |
| AACGCCTAGCACGTAACACT+TGG | - | chr1_3:57415650-57415669 | None:intergenic | 50.0% | |
| TGGGTTTCACCACATCCAAG+AGG | + | chr1_3:57415780-57415799 | Msa0127820:CDS | 50.0% | |
| TTCGCTTCTCCTCTTGGATG+TGG | - | chr1_3:57415792-57415811 | None:intergenic | 50.0% | |
| !! | CAAGTGGTAAAGGGCGTTCT+AGG | + | chr1_3:57415822-57415841 | Msa0127820:CDS | 50.0% |
| ! | GGCATCGGAGGGTTGCATAA+TGG | + | chr1_3:57412259-57412278 | Msa0127820:CDS | 55.0% |
| GGAATCGACGAAGCTGGAAG+AGG | + | chr1_3:57412281-57412300 | Msa0127820:CDS | 55.0% | |
| AGGTCCTGTCCTTGGTCCTA+TGG | + | chr1_3:57412301-57412320 | Msa0127820:CDS | 55.0% | |
| CAGATCACTAGAGGCAGAGG+AGG | + | chr1_3:57412938-57412957 | Msa0127820:intron | 55.0% | |
| TGCCATGGGCCTCGTTGATA+GGG | + | chr1_3:57413508-57413527 | Msa0127820:CDS | 55.0% | |
| CTACTCACCTCCGGGATATC+CGG | - | chr1_3:57414061-57414080 | None:intergenic | 55.0% | |
| GTCATGACCTACTCACCTCC+GGG | - | chr1_3:57414069-57414088 | None:intergenic | 55.0% | |
| AGCCTAGCTCAAACACACCG+TGG | - | chr1_3:57414658-57414677 | None:intergenic | 55.0% | |
| ACGGTGTGTTTGAGCTAGGC+TGG | + | chr1_3:57414657-57414676 | Msa0127820:intron | 55.0% | |
| !! | GTTCCGGAATGGGCATCGGA+GGG | + | chr1_3:57412248-57412267 | Msa0127820:CDS | 60.0% |
| CAACCCTCCGATGCCCATTC+CGG | - | chr1_3:57412254-57412273 | None:intergenic | 60.0% | |
| GCTGGAAGAGGTCCTGTCCT+TGG | + | chr1_3:57412293-57412312 | Msa0127820:CDS | 60.0% | |
| CTGCCATGGGCCTCGTTGAT+AGG | + | chr1_3:57413507-57413526 | Msa0127820:CDS | 60.0% | |
| CACCCTATCAACGAGGCCCA+TGG | - | chr1_3:57413513-57413532 | None:intergenic | 60.0% | |
| ! | TTTGGCTCCGGATATCCCGG+AGG | + | chr1_3:57414051-57414070 | Msa0127820:CDS | 60.0% |
| CGGATATCCCGGAGGTGAGT+AGG | + | chr1_3:57414059-57414078 | Msa0127820:intron | 60.0% | |
| !! | GGTTCCGGAATGGGCATCGG+AGG | + | chr1_3:57412247-57412266 | Msa0127820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57412220 | 57416115 | 57412220 | ID=Msa0127820;Name=Msa0127820 |
| chr1_3 | mRNA | 57412220 | 57416115 | 57412220 | ID=Msa0127820-mRNA-1;Parent=Msa0127820;Name=Msa0127820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=7|1|1|1|1|1|7|229|298 |
| chr1_3 | exon | 57412220 | 57412386 | 57412220 | ID=Msa0127820-mRNA-1:exon:18214;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57413251 | 57413374 | 57413251 | ID=Msa0127820-mRNA-1:exon:18215;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57413472 | 57413559 | 57413472 | ID=Msa0127820-mRNA-1:exon:18216;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57413768 | 57413905 | 57413768 | ID=Msa0127820-mRNA-1:exon:18217;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57413985 | 57414072 | 57413985 | ID=Msa0127820-mRNA-1:exon:18218;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57414172 | 57414292 | 57414172 | ID=Msa0127820-mRNA-1:exon:18219;Parent=Msa0127820-mRNA-1 |
| chr1_3 | exon | 57415709 | 57416115 | 57415709 | ID=Msa0127820-mRNA-1:exon:18220;Parent=Msa0127820-mRNA-1 |
| chr1_3 | five_prime_UTR | 57412220 | 57412226 | 57412220 | ID=Msa0127820-mRNA-1:five_prime_utr;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57412227 | 57412386 | 57412227 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57413251 | 57413374 | 57413251 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57413472 | 57413559 | 57413472 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57413768 | 57413905 | 57413768 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57413985 | 57414072 | 57413985 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57414172 | 57414292 | 57414172 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | CDS | 57415709 | 57415886 | 57415709 | ID=Msa0127820-mRNA-1:cds;Parent=Msa0127820-mRNA-1 |
| chr1_3 | three_prime_UTR | 57415887 | 57416115 | 57415887 | ID=Msa0127820-mRNA-1:three_prime_utr;Parent=Msa0127820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
