Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970520 | XP_013450760.1 | 94.515 | 237 | 4 | 2 | 1 | 228 | 1 | 237 | 2.02e-159 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970520 | sp|Q8VZT8|RT11_ARATH | 58.642 | 162 | 65 | 1 | 69 | 228 | 153 | 314 | 1.70e-64 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970520 | I3SP73 | 94.515 | 237 | 4 | 2 | 1 | 228 | 1 | 237 | 9.66e-160 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002540 | Msa0970520 | 0.825890 | 3.662094e-54 | -8.615850e-47 |
| Msa0032260 | Msa0970520 | 0.814816 | 1.270432e-51 | -8.615850e-47 |
| Msa0032840 | Msa0970520 | -0.811182 | 7.955480e-51 | -8.615850e-47 |
| Msa0044020 | Msa0970520 | 0.814286 | 1.664833e-51 | -8.615850e-47 |
| Msa0047980 | Msa0970520 | 0.819253 | 1.279913e-52 | -8.615850e-47 |
| Msa0064350 | Msa0970520 | 0.821035 | 5.000933e-53 | -8.615850e-47 |
| Msa0073670 | Msa0970520 | 0.826129 | 3.213297e-54 | -8.615850e-47 |
| Msa0076000 | Msa0970520 | 0.800844 | 1.191265e-48 | -8.615850e-47 |
| Msa0077200 | Msa0970520 | 0.807250 | 5.539900e-50 | -8.615850e-47 |
| Msa0082280 | Msa0970520 | 0.807822 | 4.189360e-50 | -8.615850e-47 |
| Msa0090590 | Msa0970520 | 0.801851 | 7.407785e-49 | -8.615850e-47 |
| Msa0623700 | Msa0970520 | 0.807068 | 6.055846e-50 | -8.615850e-47 |
| Msa0639120 | Msa0970520 | 0.806966 | 6.364442e-50 | -8.615850e-47 |
| Msa0650920 | Msa0970520 | 0.806914 | 6.526447e-50 | -8.615850e-47 |
| Msa0657790 | Msa0970520 | 0.820052 | 8.408825e-53 | -8.615850e-47 |
| Msa0663900 | Msa0970520 | 0.829186 | 5.926566e-55 | -8.615850e-47 |
| Msa0664960 | Msa0970520 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0680240 | Msa0970520 | 0.836706 | 7.994839e-57 | -8.615850e-47 |
| Msa0687630 | Msa0970520 | 0.848244 | 6.933793e-60 | -8.615850e-47 |
| Msa0690160 | Msa0970520 | 0.802188 | 6.314763e-49 | -8.615850e-47 |
| Msa0692840 | Msa0970520 | 0.816879 | 4.404893e-52 | -8.615850e-47 |
| Msa0692940 | Msa0970520 | 0.800560 | 1.361050e-48 | -8.615850e-47 |
| Msa0703230 | Msa0970520 | 0.860775 | 1.632301e-63 | -8.615850e-47 |
| Msa0705040 | Msa0970520 | 0.801466 | 8.887870e-49 | -8.615850e-47 |
| Msa0718740 | Msa0970520 | 0.804976 | 1.668066e-49 | -8.615850e-47 |
| Msa0755340 | Msa0970520 | 0.818507 | 1.890762e-52 | -8.615850e-47 |
| Msa0759030 | Msa0970520 | 0.815337 | 9.734493e-52 | -8.615850e-47 |
| Msa0797750 | Msa0970520 | 0.816605 | 5.072543e-52 | -8.615850e-47 |
| Msa0806920 | Msa0970520 | 0.802342 | 5.871211e-49 | -8.615850e-47 |
| Msa0810020 | Msa0970520 | 0.807870 | 4.091703e-50 | -8.615850e-47 |
| Msa0831870 | Msa0970520 | 0.812444 | 4.226329e-51 | -8.615850e-47 |
| Msa0841940 | Msa0970520 | 0.803536 | 3.326138e-49 | -8.615850e-47 |
| Msa0124990 | Msa0970520 | 0.820216 | 7.710672e-53 | -8.615850e-47 |
| Msa0127310 | Msa0970520 | 0.816871 | 4.423143e-52 | -8.615850e-47 |
| Msa0143430 | Msa0970520 | 0.821388 | 4.147175e-53 | -8.615850e-47 |
| Msa0172960 | Msa0970520 | -0.815634 | 8.359207e-52 | -8.615850e-47 |
| Msa0174770 | Msa0970520 | 0.815357 | 9.634574e-52 | -8.615850e-47 |
| Msa0181610 | Msa0970520 | 0.818338 | 2.064858e-52 | -8.615850e-47 |
| Msa0183830 | Msa0970520 | 0.818359 | 2.042755e-52 | -8.615850e-47 |
| Msa0186890 | Msa0970520 | 0.859153 | 5.035064e-63 | -8.615850e-47 |
| Msa0187930 | Msa0970520 | 0.829949 | 3.866023e-55 | -8.615850e-47 |
| Msa0194540 | Msa0970520 | 0.834568 | 2.780526e-56 | -8.615850e-47 |
| Msa0197780 | Msa0970520 | 0.804545 | 2.051769e-49 | -8.615850e-47 |
| Msa0199690 | Msa0970520 | 0.804826 | 1.792765e-49 | -8.615850e-47 |
| Msa0199880 | Msa0970520 | 0.809754 | 1.618248e-50 | -8.615850e-47 |
| Msa0204980 | Msa0970520 | 0.810608 | 1.059142e-50 | -8.615850e-47 |
| Msa0230550 | Msa0970520 | -0.813724 | 2.214585e-51 | -8.615850e-47 |
| Msa0231880 | Msa0970520 | 0.831264 | 1.841894e-55 | -8.615850e-47 |
| Msa0236270 | Msa0970520 | 0.810432 | 1.156338e-50 | -8.615850e-47 |
| Msa0376040 | Msa0970520 | 0.814103 | 1.826942e-51 | -8.615850e-47 |
| Msa0376690 | Msa0970520 | 0.803536 | 3.326588e-49 | -8.615850e-47 |
| Msa0402330 | Msa0970520 | 0.819258 | 1.276536e-52 | -8.615850e-47 |
| Msa0436460 | Msa0970520 | 0.805754 | 1.145894e-49 | -8.615850e-47 |
| Msa0471590 | Msa0970520 | 0.817478 | 3.229478e-52 | -8.615850e-47 |
| Msa0242410 | Msa0970520 | 0.809185 | 2.143499e-50 | -8.615850e-47 |
| Msa0244780 | Msa0970520 | 0.826759 | 2.273896e-54 | -8.615850e-47 |
| Msa0264570 | Msa0970520 | 0.836536 | 8.833479e-57 | -8.615850e-47 |
| Msa0268130 | Msa0970520 | 0.836830 | 7.433990e-57 | -8.615850e-47 |
| Msa0298990 | Msa0970520 | 0.835614 | 1.514745e-56 | -8.615850e-47 |
| Msa0304260 | Msa0970520 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0314720 | Msa0970520 | 0.808932 | 2.429349e-50 | -8.615850e-47 |
| Msa0355270 | Msa0970520 | 0.816399 | 5.642592e-52 | -8.615850e-47 |
| Msa0508630 | Msa0970520 | 0.807031 | 6.164594e-50 | -8.615850e-47 |
| Msa0516040 | Msa0970520 | 0.807428 | 5.079911e-50 | -8.615850e-47 |
| Msa0521880 | Msa0970520 | 0.804520 | 2.076820e-49 | -8.615850e-47 |
| Msa0526540 | Msa0970520 | 0.804864 | 1.760687e-49 | -8.615850e-47 |
| Msa0541860 | Msa0970520 | 0.856068 | 4.130413e-62 | -8.615850e-47 |
| Msa0552810 | Msa0970520 | 0.831516 | 1.597249e-55 | -8.615850e-47 |
| Msa0560470 | Msa0970520 | 0.812746 | 3.629590e-51 | -8.615850e-47 |
| Msa0576940 | Msa0970520 | 0.806346 | 8.601936e-50 | -8.615850e-47 |
| Msa0581070 | Msa0970520 | 0.844401 | 7.736809e-59 | -8.615850e-47 |
| Msa0591770 | Msa0970520 | 0.805568 | 1.253684e-49 | -8.615850e-47 |
| Msa0864010 | Msa0970520 | 0.801360 | 9.341509e-49 | -8.615850e-47 |
| Msa0876200 | Msa0970520 | 0.808008 | 3.825274e-50 | -8.615850e-47 |
| Msa0900630 | Msa0970520 | 0.806302 | 8.785942e-50 | -8.615850e-47 |
| Msa0905550 | Msa0970520 | 0.808176 | 3.522657e-50 | -8.615850e-47 |
| Msa0937550 | Msa0970520 | 0.829756 | 4.308043e-55 | -8.615850e-47 |
| Msa0949960 | Msa0970520 | 0.816041 | 6.783222e-52 | -8.615850e-47 |
| Msa0966270 | Msa0970520 | 0.839266 | 1.756534e-57 | -8.615850e-47 |
| Msa0968590 | Msa0970520 | 0.807139 | 5.847595e-50 | -8.615850e-47 |
| Msa0970520 | Msa0974810 | 0.815711 | 8.035060e-52 | -8.615850e-47 |
| Msa0970520 | Msa0996080 | 0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0970520 | Msa1008060 | -0.810238 | 1.273310e-50 | -8.615850e-47 |
| Msa0970520 | Msa1019240 | 0.802272 | 6.070850e-49 | -8.615850e-47 |
| Msa0970520 | Msa1019260 | 0.805851 | 1.093367e-49 | -8.615850e-47 |
| Msa0970520 | Msa1059540 | 0.820550 | 6.464649e-53 | -8.615850e-47 |
| Msa0970520 | Msa1081150 | 0.835769 | 1.383560e-56 | -8.615850e-47 |
| Msa0970520 | Msa1082700 | 0.831155 | 1.959724e-55 | -8.615850e-47 |
| Msa0970520 | Msa1083210 | 0.802955 | 4.387241e-49 | -8.615850e-47 |
| Msa0970520 | Msa1126510 | 0.841336 | 5.055924e-58 | -8.615850e-47 |
| Msa0970520 | Msa1126770 | 0.855635 | 5.527044e-62 | -8.615850e-47 |
| Msa0970520 | Msa1127890 | 0.822712 | 2.046117e-53 | -8.615850e-47 |
| Msa0970520 | Msa1134110 | 0.812180 | 4.827337e-51 | -8.615850e-47 |
| Msa0970520 | Msa1143840 | 0.804010 | 2.652395e-49 | -8.615850e-47 |
| Msa0970520 | Msa1150970 | 0.807120 | 5.902150e-50 | -8.615850e-47 |
| Msa0970520 | Msa1165870 | 0.814516 | 1.480549e-51 | -8.615850e-47 |
| Msa0970520 | Msa1166860 | 0.832647 | 8.391525e-56 | -8.615850e-47 |
| Msa0970520 | Msa1174100 | 0.810861 | 9.337033e-51 | -8.615850e-47 |
| Msa0970520 | Msa1184370 | 0.831618 | 1.507442e-55 | -8.615850e-47 |
| Msa0970520 | Msa1186800 | 0.806954 | 6.401570e-50 | -8.615850e-47 |
| Msa0970520 | Msa1204250 | 0.800975 | 1.119760e-48 | -8.615850e-47 |
| Msa0970520 | Msa1210810 | 0.850825 | 1.321831e-60 | -8.615850e-47 |
| Msa0970520 | Msa1227690 | 0.826759 | 2.274061e-54 | -8.615850e-47 |
| Msa0970520 | Msa1249870 | 0.807131 | 5.871880e-50 | -8.615850e-47 |
| Msa0970520 | Msa1254710 | 0.841570 | 4.385408e-58 | -8.615850e-47 |
| Msa0970520 | Msa1257510 | 0.829052 | 6.384951e-55 | -8.615850e-47 |
| Msa0970520 | Msa1259430 | 0.802979 | 4.337562e-49 | -8.615850e-47 |
| Msa0970520 | Msa1281190 | 0.829141 | 6.077628e-55 | -8.615850e-47 |
| Msa0970520 | Msa1299040 | 0.826841 | 2.173949e-54 | -8.615850e-47 |
| Msa0970520 | Msa1307950 | 0.838114 | 3.484297e-57 | -8.615850e-47 |
| Msa0970520 | Msa1315100 | 0.804997 | 1.650807e-49 | -8.615850e-47 |
| Msa0970520 | Msa1316780 | 0.800118 | 1.674276e-48 | -8.615850e-47 |
| Msa0970520 | Msa1316830 | 0.819682 | 1.021621e-52 | -8.615850e-47 |
| Msa0970520 | Msa1335940 | 0.827719 | 1.339353e-54 | -8.615850e-47 |
| Msa0970520 | Msa1363330 | 0.802424 | 5.647609e-49 | -8.615850e-47 |
| Msa0970520 | Msa1365150 | 0.830214 | 3.331648e-55 | -8.615850e-47 |
| Msa0970520 | Msa1367880 | 0.834154 | 3.531576e-56 | -8.615850e-47 |
| Msa0970520 | Msa1370860 | 0.809438 | 1.892291e-50 | -8.615850e-47 |
| Msa0970520 | Msa1386600 | 0.802240 | 6.162126e-49 | -8.615850e-47 |
| Msa0970520 | Msa1397810 | 0.806478 | 8.067030e-50 | -8.615850e-47 |
| Msa0970520 | Msa1404010 | 0.819344 | 1.219984e-52 | -8.615850e-47 |
| Msa0970520 | Msa1404190 | 0.836031 | 1.187193e-56 | -8.615850e-47 |
| Msa0970520 | Msa1427060 | 0.837385 | 5.362226e-57 | -8.615850e-47 |
| Msa0970520 | Msa1442850 | 0.829980 | 3.799480e-55 | -8.615850e-47 |
| Msa0970520 | Msa1448510 | 0.809702 | 1.660269e-50 | -8.615850e-47 |
| Msa0970520 | Msa1448690 | 0.830547 | 2.762314e-55 | -8.615850e-47 |
| Msa0970520 | Msa1462500 | 0.802814 | 4.692269e-49 | -8.615850e-47 |
| Msa0970520 | Msa1465080 | 0.825565 | 4.373281e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970520 | MtrunA17_Chr6g0449471 | 94.515 | 237 | 4 | 2 | 1 | 228 | 1 | 237 | 1.86e-163 | 451 |
| Msa0970520 | MtrunA17_Chr2g0332561 | 84.454 | 238 | 27 | 3 | 1 | 228 | 1 | 238 | 2.54e-141 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970520 | AT1G31817.1 | 58.642 | 162 | 65 | 1 | 69 | 228 | 153 | 314 | 1.73e-65 | 205 |
Find 61 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTAGGGTTTGAGATTT+GGG | 0.234267 | 6_4:-2042547 | None:intergenic |
| CATTGTTGCTGCAGATTACT+AGG | 0.255446 | 6_4:-2042561 | None:intergenic |
| TTGGCAGTCTGCAGCCATTA+TGG | 0.258176 | 6_4:-2048234 | None:intergenic |
| GATTACTAGGGTTTGAGATT+TGG | 0.262449 | 6_4:-2042548 | None:intergenic |
| AATCAGGGCAAAAGCTTTCT+AGG | 0.277751 | 6_4:+2048014 | Msa0970520:CDS |
| GTGAGATTGAAGTGTGGTTT+TGG | 0.288990 | 6_4:-2042639 | None:intergenic |
| CCCTGATTTCATGTCTTTCA+AGG | 0.289130 | 6_4:-2047999 | None:intergenic |
| GGACGGAGATCTAGAGGTTT+AGG | 0.305182 | 6_4:+2048067 | Msa0970520:CDS |
| TGGTGGAAATTCCAGGAAAA+TGG | 0.320222 | 6_4:+2047802 | Msa0970520:CDS |
| GAAGATGAAAAGAGTGTTAT+GGG | 0.321530 | 6_4:+2047845 | Msa0970520:CDS |
| TGGCAGTCTGCAGCCATTAT+GGG | 0.322578 | 6_4:-2048233 | None:intergenic |
| AGAAGATGAAAAGAGTGTTA+TGG | 0.333476 | 6_4:+2047844 | Msa0970520:CDS |
| TCCTTGAAAGACATGAAATC+AGG | 0.342062 | 6_4:+2047998 | Msa0970520:CDS |
| AACTAGATACGTCGACTCTT+TGG | 0.342449 | 6_4:-2048253 | None:intergenic |
| GAAACTGCAGGATATGTTAG+AGG | 0.388568 | 6_4:+2047674 | Msa0970520:intron |
| CTGAGATTGGTGGAAATTCC+AGG | 0.399094 | 6_4:+2047795 | Msa0970520:CDS |
| GTATCTTCAATGTATACAAT+TGG | 0.413544 | 6_4:-2048199 | None:intergenic |
| GTAAAACTTAGTGGCTCTGC+TGG | 0.418753 | 6_4:+2047974 | Msa0970520:CDS |
| TCCCGACCCCGCAGAAAATC+CGG | 0.427991 | 6_4:-2047764 | None:intergenic |
| ACAACTCGTCGTCCCCATAA+TGG | 0.428444 | 6_4:+2048220 | Msa0970520:CDS |
| AAAGGAAATGTAAAACTTAG+TGG | 0.428546 | 6_4:+2047965 | Msa0970520:CDS |
| TGTGAATGCAAGTGCTCGTC+CGG | 0.438860 | 6_4:+2047745 | Msa0970520:CDS |
| GCTATCTATCTCAGTTAGAA+AGG | 0.468861 | 6_4:+2048391 | Msa0970520:three_prime_UTR |
| GTTACAGTGACCGATTCTAA+AGG | 0.474490 | 6_4:+2047947 | Msa0970520:CDS |
| CGGGAGAATAATGCTGAGAT+TGG | 0.475176 | 6_4:+2047782 | Msa0970520:CDS |
| GTGCAAGTTGGGGTTTGAGC+GGG | 0.480718 | 6_4:+2047705 | Msa0970520:CDS |
| GAAGAAGGAATTGAAATTTG+AGG | 0.481411 | 6_4:-2048423 | None:intergenic |
| AATGAAGAGATTGACGGCTA+TGG | 0.482399 | 6_4:-2042610 | None:intergenic |
| CATCATGCTGGAAATGATAC+AGG | 0.497731 | 6_4:-2047883 | None:intergenic |
| TGCTGAAGCAACTGCGGAAG+TGG | 0.498444 | 6_4:+2048042 | Msa0970520:CDS |
| GAGAATAATGCTGAGATTGG+TGG | 0.503317 | 6_4:+2047785 | Msa0970520:CDS |
| AGAATCGGTCACTGTAACAA+AGG | 0.511601 | 6_4:-2047942 | None:intergenic |
| GAACAAAATCAGCATCATGC+TGG | 0.519192 | 6_4:-2047895 | None:intergenic |
| TTGTAGCAACGTCTATTGAA+AGG | 0.519770 | 6_4:+2048369 | Msa0970520:three_prime_UTR |
| AGATTGACGGCTATGGATGA+AGG | 0.535592 | 6_4:-2042603 | None:intergenic |
| CAAGTTGGGGTTTGAGCGGG+AGG | 0.553465 | 6_4:+2047708 | Msa0970520:CDS |
| GGCAGTCTGCAGCCATTATG+GGG | 0.556364 | 6_4:-2048232 | None:intergenic |
| TAGAAAATACGTTCAACAGT+AGG | 0.556732 | 6_4:-2048287 | None:intergenic |
| TGAAGGAAGAACACAATTTG+CGG | 0.562090 | 6_4:-2042586 | None:intergenic |
| GAAGCAACTGCGGAAGTGGT+TGG | 0.563081 | 6_4:+2048046 | Msa0970520:CDS |
| ATGGAGAATGAAGAGATTGA+CGG | 0.563106 | 6_4:-2042616 | None:intergenic |
| ATTGTTGCTGCAGATTACTA+GGG | 0.563552 | 6_4:-2042560 | None:intergenic |
| AGCAATATTGAGCTGGAGGG+AGG | 0.568183 | 6_4:+2048147 | Msa0970520:CDS |
| TCTCACACCACCTTCTTCCA+AGG | 0.578505 | 6_4:+2042656 | Msa0970520:CDS |
| AAAGGCAAGCAATATTGAGC+TGG | 0.578900 | 6_4:+2048140 | Msa0970520:CDS |
| GTGGTTGGACGGAGATCTAG+AGG | 0.582119 | 6_4:+2048061 | Msa0970520:CDS |
| CCTTGAAAGACATGAAATCA+GGG | 0.583578 | 6_4:+2047999 | Msa0970520:CDS |
| AGTGCAAGTTGGGGTTTGAG+CGG | 0.585051 | 6_4:+2047704 | Msa0970520:CDS |
| GCAATATTGAGCTGGAGGGA+GGG | 0.589094 | 6_4:+2048148 | Msa0970520:CDS |
| CAACTGCGGAAGTGGTTGGA+CGG | 0.593288 | 6_4:+2048050 | Msa0970520:CDS |
| TCTGTTGTCATGAAAGTGAA+CGG | 0.595836 | 6_4:+2048097 | Msa0970520:CDS |
| AGGAAAATGGACTTTGTGAG+AGG | 0.596525 | 6_4:+2047815 | Msa0970520:CDS |
| GGCAAGCAATATTGAGCTGG+AGG | 0.597786 | 6_4:+2048143 | Msa0970520:CDS |
| TTACTAGGGTTTGAGATTTG+GGG | 0.606708 | 6_4:-2042546 | None:intergenic |
| GAGGGATTTACTGATTCTCG+AGG | 0.625322 | 6_4:+2048166 | Msa0970520:CDS |
| GAAAGTGTTACCTTGGAAGA+AGG | 0.628450 | 6_4:-2042666 | None:intergenic |
| GCAAGCAATATTGAGCTGGA+GGG | 0.647783 | 6_4:+2048144 | Msa0970520:CDS |
| GTATGCTGCTGAAGCAACTG+CGG | 0.658519 | 6_4:+2048036 | Msa0970520:CDS |
| GATGAAAAGAGTGTTATGGG+AGG | 0.673626 | 6_4:+2047848 | Msa0970520:CDS |
| GGTGGTGTGAGATTGAAGTG+TGG | 0.696440 | 6_4:-2042645 | None:intergenic |
| AGTGTTACCTTGGAAGAAGG+TGG | 0.718531 | 6_4:-2042663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTAATTGTTAT+TGG | + | chr6_4:2042821-2042840 | Msa0970520:intron | 10.0% |
| !! | ATTTAACAATAATGAAATAT+TGG | + | chr6_4:2045961-2045980 | Msa0970520:intron | 10.0% |
| !!! | ATATATTTTACCATCAAATT+AGG | + | chr6_4:2043321-2043340 | Msa0970520:intron | 15.0% |
| !! | TTTCTTGATTTCATAAATTT+AGG | - | chr6_4:2043349-2043368 | None:intergenic | 15.0% |
| !! | TACAAAATATTGTTAAATAG+AGG | + | chr6_4:2043687-2043706 | Msa0970520:intron | 15.0% |
| !! | ACAAAATATTGTTAAATAGA+GGG | + | chr6_4:2043688-2043707 | Msa0970520:intron | 15.0% |
| !! | ACAAAAAGAAAATAAAAATC+AGG | - | chr6_4:2043826-2043845 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTGTAAGATTTT+TGG | + | chr6_4:2044821-2044840 | Msa0970520:intron | 15.0% |
| !!! | ATAAGTTTTGTAAGATTTTT+GGG | + | chr6_4:2044822-2044841 | Msa0970520:intron | 15.0% |
| !!! | ATATATTTTACCATCAAATT+AGG | + | chr6_4:2043321-2043340 | Msa0970520:intron | 15.0% |
| !! | AAATCAATAAACTAGAAAAA+AGG | + | chr6_4:2045167-2045186 | Msa0970520:intron | 15.0% |
| !! | ATATATGTTATCATCAAATT+AGG | + | chr6_4:2045385-2045404 | Msa0970520:intron | 15.0% |
| !! | TACAAAATATTGTTAAATAG+CGG | + | chr6_4:2043687-2043706 | Msa0970520:intron | 15.0% |
| !!! | TATAGTTTTCATCTAAAATT+GGG | - | chr6_4:2046138-2046157 | None:intergenic | 15.0% |
| !!! | ATATAGTTTTCATCTAAAAT+TGG | - | chr6_4:2046139-2046158 | None:intergenic | 15.0% |
| !! | TTGTGTTAATTATATTAAGT+TGG | + | chr6_4:2047070-2047089 | Msa0970520:intron | 15.0% |
| !! | TGTGTTAATTATATTAAGTT+GGG | + | chr6_4:2047071-2047090 | Msa0970520:intron | 15.0% |
| !!! | ATAAGTTTTGTAAGATTGTT+TGG | + | chr6_4:2043003-2043022 | Msa0970520:intron | 20.0% |
| !!! | TAAGTTTTGTAAGATTGTTT+GGG | + | chr6_4:2043004-2043023 | Msa0970520:intron | 20.0% |
| !! | ATACATGATATCATCAAATT+AGG | + | chr6_4:2043576-2043595 | Msa0970520:intron | 20.0% |
| !!! | TTTTCTTTTTGTAGAAAGAT+TGG | + | chr6_4:2043834-2043853 | Msa0970520:intron | 20.0% |
| !! | TAAAGAAATTGGATTCTAAA+TGG | + | chr6_4:2043987-2044006 | Msa0970520:intron | 20.0% |
| !! | ATATATGGTATCATCAAATT+AGG | + | chr6_4:2044180-2044199 | Msa0970520:intron | 20.0% |
| !! | ATATATGGTATCATCAAATT+AGG | + | chr6_4:2044180-2044199 | Msa0970520:intron | 20.0% |
| !! | TACAAAATATTGTCAAATAG+CGG | + | chr6_4:2044538-2044557 | Msa0970520:intron | 20.0% |
| !!! | TTTATTGATTTCATCCATTT+AGG | - | chr6_4:2045158-2045177 | None:intergenic | 20.0% |
| !!! | TATTCTTTTTGTAGAAAGAT+TGG | + | chr6_4:2045662-2045681 | Msa0970520:intron | 20.0% |
| !! | AATATGATGCTATTAATTAG+TGG | + | chr6_4:2046057-2046076 | Msa0970520:intron | 20.0% |
| !!! | ATCTAATTTCATTCCTTTTT+GGG | + | chr6_4:2046214-2046233 | Msa0970520:intron | 20.0% |
| !!! | TTATTAGAGTTGATAAAAGA+AGG | + | chr6_4:2046259-2046278 | Msa0970520:intron | 20.0% |
| !!! | AAAAGGTTTAAAATCCATAT+GGG | - | chr6_4:2046394-2046413 | None:intergenic | 20.0% |
| !!! | TAAAAGGTTTAAAATCCATA+TGG | - | chr6_4:2046395-2046414 | None:intergenic | 20.0% |
| !! | TAAAGAATCAAAGTCATAAA+AGG | - | chr6_4:2046411-2046430 | None:intergenic | 20.0% |
| !! | TATCCTAATCAAATTAATCT+TGG | - | chr6_4:2046519-2046538 | None:intergenic | 20.0% |
| !!! | AGATTAATTTGATTAGGATA+TGG | + | chr6_4:2046519-2046538 | Msa0970520:intron | 20.0% |
| !!! | GGTTTTTTTTTTTGAAGTAA+AGG | + | chr6_4:2046548-2046567 | Msa0970520:intron | 20.0% |
| !! | AAGATGTGTTAAACAAAATA+GGG | + | chr6_4:2046888-2046907 | Msa0970520:intron | 20.0% |
| !!! | TTATTTTGTGAGACTAAATT+GGG | - | chr6_4:2047022-2047041 | None:intergenic | 20.0% |
| !!! | ATTATTTTGTGAGACTAAAT+TGG | - | chr6_4:2047023-2047042 | None:intergenic | 20.0% |
| !!! | TGGTTATTATTTTGAGTAAA+AGG | + | chr6_4:2047328-2047347 | Msa0970520:intron | 20.0% |
| !!! | ATTTTGTTCATATAAAGATG+CGG | + | chr6_4:2047909-2047928 | Msa0970520:CDS | 20.0% |
| !!! | TTTTACATTTCCTTTAGAAT+CGG | - | chr6_4:2047960-2047979 | None:intergenic | 20.0% |
| !! | GAGAGTGATAATCATTTTAA+AGG | - | chr6_4:2042501-2042520 | None:intergenic | 25.0% |
| !! | TTTTTAGATGTTTGCACTTT+TGG | + | chr6_4:2042776-2042795 | Msa0970520:intron | 25.0% |
| !! | TTTTAGATGTTTGCACTTTT+GGG | + | chr6_4:2042777-2042796 | Msa0970520:intron | 25.0% |
| ! | TATCAAATTACTATCAGTGT+CGG | - | chr6_4:2042940-2042959 | None:intergenic | 25.0% |
| !! | AATTTAGGATCCTAATTTGA+TGG | - | chr6_4:2043334-2043353 | None:intergenic | 25.0% |
| ! | GAAATCAAGAAACTAGAAAA+AGG | + | chr6_4:2043357-2043376 | Msa0970520:intron | 25.0% |
| ! | TTACTAGTTAGTGATAGATT+CGG | + | chr6_4:2043388-2043407 | Msa0970520:intron | 25.0% |
| ! | TTACAACTTTAGATCCTAAA+TGG | + | chr6_4:2043770-2043789 | Msa0970520:intron | 25.0% |
| !!! | TATTTCATTTTAGTGTACCT+AGG | + | chr6_4:2043888-2043907 | Msa0970520:intron | 25.0% |
| !!! | TGTCAATGTTCTAAAGAAAT+TGG | + | chr6_4:2043976-2043995 | Msa0970520:intron | 25.0% |
| ! | TAAAATCAAGAAAACTGGAA+AGG | + | chr6_4:2044011-2044030 | Msa0970520:intron | 25.0% |
| ! | TAAATCAAGAAACTGCAAAA+AGG | + | chr6_4:2044067-2044086 | Msa0970520:intron | 25.0% |
| ! | TACACAACTCATATCATATA+TGG | + | chr6_4:2043306-2043325 | Msa0970520:intron | 25.0% |
| ! | TACACAACTCATATCATATA+TGG | + | chr6_4:2043306-2043325 | Msa0970520:intron | 25.0% |
| ! | CTAAATAGCTGAATTCATTT+GGG | + | chr6_4:2044646-2044665 | Msa0970520:intron | 25.0% |
| ! | AAATAGAAGTGATCGTATAT+AGG | + | chr6_4:2044784-2044803 | Msa0970520:intron | 25.0% |
| ! | AATAGAAGTGATCGTATATA+GGG | + | chr6_4:2044785-2044804 | Msa0970520:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | chr6_4:2043223-2043242 | Msa0970520:intron | 25.0% |
| !!! | TATTTGATTTTAATGCACGT+GGG | + | chr6_4:2045715-2045734 | Msa0970520:intron | 25.0% |
| ! | TCAACAAATTAGATCCTAAA+TGG | + | chr6_4:2045814-2045833 | Msa0970520:intron | 25.0% |
| !! | AAGTGAAATACAGTGTTTTA+AGG | - | chr6_4:2045899-2045918 | None:intergenic | 25.0% |
| ! | TCATTATTGTTAAATGAGCT+TGG | - | chr6_4:2045956-2045975 | None:intergenic | 25.0% |
| !! | CATCTAATTTCATTCCTTTT+TGG | + | chr6_4:2046213-2046232 | Msa0970520:intron | 25.0% |
| !! | TCTAATTTCATTCCTTTTTG+GGG | + | chr6_4:2046215-2046234 | Msa0970520:intron | 25.0% |
| ! | TTGCTAGTAAAAAATTAACC+TGG | + | chr6_4:2046355-2046374 | Msa0970520:intron | 25.0% |
| !! | TAGCCAAGATTAATTTGATT+AGG | + | chr6_4:2046513-2046532 | Msa0970520:intron | 25.0% |
| ! | CAAGATGTGTTAAACAAAAT+AGG | + | chr6_4:2046887-2046906 | Msa0970520:intron | 25.0% |
| ! | CTTATCAGTGTACTAATATT+CGG | + | chr6_4:2046959-2046978 | Msa0970520:intron | 25.0% |
| ! | GAAAATTGTAAGACCAAATT+GGG | - | chr6_4:2046993-2047012 | None:intergenic | 25.0% |
| ! | AGAAAATTGTAAGACCAAAT+TGG | - | chr6_4:2046994-2047013 | None:intergenic | 25.0% |
| ! | ACACAATTTGAAAATGTCAA+GGG | - | chr6_4:2047056-2047075 | None:intergenic | 25.0% |
| ! | AACACAATTTGAAAATGTCA+AGG | - | chr6_4:2047057-2047076 | None:intergenic | 25.0% |
| !!! | TAATCTTCTATTTCTATACC+TGG | - | chr6_4:2047167-2047186 | None:intergenic | 25.0% |
| ! | AAAACAACAATTAGTGAGAA+TGG | - | chr6_4:2047255-2047274 | None:intergenic | 25.0% |
| ! | ATAATCACACAACCTTATTA+GGG | - | chr6_4:2047527-2047546 | None:intergenic | 25.0% |
| ! | TATAATCACACAACCTTATT+AGG | - | chr6_4:2047528-2047547 | None:intergenic | 25.0% |
| ! | TTATGCAATGACATGAAATA+TGG | - | chr6_4:2046706-2046725 | None:intergenic | 25.0% |
| ! | AAAGGAAATGTAAAACTTAG+TGG | + | chr6_4:2047965-2047984 | Msa0970520:CDS | 25.0% |
| ! | GTATCTTCAATGTATACAAT+TGG | - | chr6_4:2048202-2048221 | None:intergenic | 25.0% |
| ! | ATTACTAGGGTTTGAGATTT+GGG | - | chr6_4:2042550-2042569 | None:intergenic | 30.0% |
| CAACACACACTTATGATTAT+GGG | - | chr6_4:2043249-2043268 | None:intergenic | 30.0% | |
| TCAACACACACTTATGATTA+TGG | - | chr6_4:2043250-2043269 | None:intergenic | 30.0% | |
| TATTACTAGTGTCTATGTGT+CGG | - | chr6_4:2043457-2043476 | None:intergenic | 30.0% | |
| CACTCTTTAACAACATTGTT+AGG | - | chr6_4:2043604-2043623 | None:intergenic | 30.0% | |
| ! | TATTTTGTACTAGTGTATCG+TGG | - | chr6_4:2043676-2043695 | None:intergenic | 30.0% |
| ATGGCTAAAATCAAGAAAAC+TGG | + | chr6_4:2044006-2044025 | Msa0970520:intron | 30.0% | |
| ATGCCTTCAATATGAAGTTT+AGG | + | chr6_4:2044139-2044158 | Msa0970520:intron | 30.0% | |
| TCTCTATTCACAACATTGTT+AGG | - | chr6_4:2044208-2044227 | None:intergenic | 30.0% | |
| ATGCCTTCAATATGAAGTTT+AGG | + | chr6_4:2044139-2044158 | Msa0970520:intron | 30.0% | |
| ACACCTAAACTTCATATTGA+AGG | - | chr6_4:2044381-2044400 | None:intergenic | 30.0% | |
| TCTCTATTCACAACATTGTT+AGG | - | chr6_4:2044208-2044227 | None:intergenic | 30.0% | |
| ! | GATTTGTTCAAATTTCGCTA+CGG | - | chr6_4:2044491-2044510 | None:intergenic | 30.0% |
| CCAAATGAATTCAGCTATTT+AGG | - | chr6_4:2044648-2044667 | None:intergenic | 30.0% | |
| CCTAAATAGCTGAATTCATT+TGG | + | chr6_4:2044645-2044664 | Msa0970520:intron | 30.0% | |
| !! | GTATATAGGGTCTTATTTAC+TGG | + | chr6_4:2044798-2044817 | Msa0970520:intron | 30.0% |
| ! | AGATCTTTTTATAAGCTACC+TGG | - | chr6_4:2044914-2044933 | None:intergenic | 30.0% |
| ! | CATTTAGGATCCTAATTTGA+TGG | - | chr6_4:2045143-2045162 | None:intergenic | 30.0% |
| CATCAAATTAGGATCCTAAA+TGG | + | chr6_4:2043332-2043351 | Msa0970520:intron | 30.0% | |
| ATGCCTTCAATATGAAGTTT+CGG | + | chr6_4:2044139-2044158 | Msa0970520:intron | 30.0% | |
| TCTCTATTCACAACATTGTT+AGG | - | chr6_4:2044208-2044227 | None:intergenic | 30.0% | |
| !! | GTTTTGTTCAAATTTCGCTA+CGG | - | chr6_4:2045460-2045479 | None:intergenic | 30.0% |
| TGACAACATTAGATCCTAAA+TGG | + | chr6_4:2045600-2045619 | Msa0970520:intron | 30.0% | |
| !! | GTATTTGATTTTAATGCACG+TGG | + | chr6_4:2045714-2045733 | Msa0970520:intron | 30.0% |
| ! | CATAATATTTAGCTCGCATT+TGG | + | chr6_4:2045772-2045791 | Msa0970520:intron | 30.0% |
| TAAAGTCGAGAAAACAGAAA+AGG | + | chr6_4:2045838-2045857 | Msa0970520:intron | 30.0% | |
| AGTGATAGATAGTAATCAAC+AGG | + | chr6_4:2045870-2045889 | Msa0970520:intron | 30.0% | |
| GTTTCTGTCAAAACAAGTAA+AGG | + | chr6_4:2046575-2046594 | Msa0970520:intron | 30.0% | |
| TGGAAAGACTAACTTAGAAT+TGG | + | chr6_4:2046770-2046789 | Msa0970520:intron | 30.0% | |
| TGAAGCTCATCAACATAAAT+GGG | - | chr6_4:2046830-2046849 | None:intergenic | 30.0% | |
| ATGAAGCTCATCAACATAAA+TGG | - | chr6_4:2046831-2046850 | None:intergenic | 30.0% | |
| TTTGTTTAACACATCTTGCT+TGG | - | chr6_4:2046885-2046904 | None:intergenic | 30.0% | |
| TCGACAAAAATTGTTAGATG+TGG | + | chr6_4:2047198-2047217 | Msa0970520:intron | 30.0% | |
| TCAATATTTGTGTTTGTGTG+TGG | + | chr6_4:2047400-2047419 | Msa0970520:intron | 30.0% | |
| TAATCACACAACCTTATTAG+GGG | - | chr6_4:2047526-2047545 | None:intergenic | 30.0% | |
| !! | AGAAGATGAAAAGAGTGTTA+TGG | + | chr6_4:2047844-2047863 | Msa0970520:CDS | 30.0% |
| !! | GAAGATGAAAAGAGTGTTAT+GGG | + | chr6_4:2047845-2047864 | Msa0970520:CDS | 30.0% |
| ! | TTACTCATTTTCGAAGGAAA+AGG | + | chr6_4:2048122-2048141 | Msa0970520:CDS | 30.0% |
| TAGAAAATACGTTCAACAGT+AGG | - | chr6_4:2048290-2048309 | None:intergenic | 30.0% | |
| ! | TTACTAGGGTTTGAGATTTG+GGG | - | chr6_4:2042549-2042568 | None:intergenic | 35.0% |
| ! | GATTACTAGGGTTTGAGATT+TGG | - | chr6_4:2042551-2042570 | None:intergenic | 35.0% |
| ATTGTTGCTGCAGATTACTA+GGG | - | chr6_4:2042563-2042582 | None:intergenic | 35.0% | |
| TGAAGGAAGAACACAATTTG+CGG | - | chr6_4:2042589-2042608 | None:intergenic | 35.0% | |
| ATGGAGAATGAAGAGATTGA+CGG | - | chr6_4:2042619-2042638 | None:intergenic | 35.0% | |
| !! | AAAGTGTGAAAGTGTTACCT+TGG | - | chr6_4:2042676-2042695 | None:intergenic | 35.0% |
| AAGTGATCCTATTCGTATGT+AGG | + | chr6_4:2042965-2042984 | Msa0970520:intron | 35.0% | |
| AGTGATCCTATTCGTATGTA+GGG | + | chr6_4:2042966-2042985 | Msa0970520:intron | 35.0% | |
| ATAAGACCCTACATACGAAT+AGG | - | chr6_4:2042975-2042994 | None:intergenic | 35.0% | |
| !! | GTATGTAGGGTCTTATTTAC+TGG | + | chr6_4:2042979-2042998 | Msa0970520:intron | 35.0% |
| ! | TTATTTTCGTAAGTTCTGCC+AGG | + | chr6_4:2043075-2043094 | Msa0970520:intron | 35.0% |
| AGATCTTTCTATAAGCTACC+TGG | - | chr6_4:2043096-2043115 | None:intergenic | 35.0% | |
| CTTATGATTATGGGTCTGTT+TGG | - | chr6_4:2043240-2043259 | None:intergenic | 35.0% | |
| ! | ATGCCTTTAATCTGAAGTGT+CGG | + | chr6_4:2043280-2043299 | Msa0970520:intron | 35.0% |
| CAAGAAACTAGAAAAAGGTG+TGG | + | chr6_4:2043362-2043381 | Msa0970520:intron | 35.0% | |
| ATAGTTGTGTTATACCGTAG+CGG | + | chr6_4:2043627-2043646 | Msa0970520:intron | 35.0% | |
| ! | GATTTGTTCAAATTCCGCTA+CGG | - | chr6_4:2043644-2043663 | None:intergenic | 35.0% |
| CCAAATGATTTCAGCCATTT+AGG | - | chr6_4:2043787-2043806 | None:intergenic | 35.0% | |
| CCTAAATGGCTGAAATCATT+TGG | + | chr6_4:2043784-2043803 | Msa0970520:intron | 35.0% | |
| TAGAAAGATTGGTGCAATAG+TGG | + | chr6_4:2043845-2043864 | Msa0970520:intron | 35.0% | |
| GTGAGTAGTGATAAATCCTT+TGG | + | chr6_4:2044044-2044063 | Msa0970520:intron | 35.0% | |
| GCAGTTTCTTGATTTACCAA+AGG | - | chr6_4:2044063-2044082 | None:intergenic | 35.0% | |
| GCACCTAAACTTCATATTGA+AGG | - | chr6_4:2044145-2044164 | None:intergenic | 35.0% | |
| ! | GCTTTGTTCAAATTTCGCTA+CGG | - | chr6_4:2044255-2044274 | None:intergenic | 35.0% |
| TTGTACTAAGTAGTGTATCG+CGG | - | chr6_4:2044523-2044542 | None:intergenic | 35.0% | |
| CAGCCTATGATATTGTTCAT+CGG | + | chr6_4:2044859-2044878 | Msa0970520:intron | 35.0% | |
| CAACCGATGAACAATATCAT+AGG | - | chr6_4:2044865-2044884 | None:intergenic | 35.0% | |
| ! | TTATTTTCGTATGTTCTGCC+AGG | + | chr6_4:2044893-2044912 | Msa0970520:intron | 35.0% |
| ACGCCTTTAATATGAAGTGT+CGG | + | chr6_4:2045094-2045113 | Msa0970520:intron | 35.0% | |
| AAGGTGTAGTAGTTACTAGT+TGG | + | chr6_4:2045186-2045205 | Msa0970520:intron | 35.0% | |
| TATTGCTGATGTATATGCGT+CGG | - | chr6_4:2045267-2045286 | None:intergenic | 35.0% | |
| GTTGTGAATAGAGATTGTAG+TGG | + | chr6_4:2045419-2045438 | Msa0970520:intron | 35.0% | |
| CTAAATGGCTGAAGTCATTT+GGG | + | chr6_4:2045615-2045634 | Msa0970520:intron | 35.0% | |
| TTTCTCGACTTTAGCCATTT+AGG | - | chr6_4:2045831-2045850 | None:intergenic | 35.0% | |
| TCGAGAAAACAGAAAAGGAT+CGG | + | chr6_4:2045843-2045862 | Msa0970520:intron | 35.0% | |
| !!! | AATCCTTTGAGCTAGCTTTT+GGG | + | chr6_4:2045922-2045941 | Msa0970520:intron | 35.0% |
| ATATCTGTGATTCACATCAG+TGG | + | chr6_4:2046003-2046022 | Msa0970520:intron | 35.0% | |
| GACTACTGATCCACTAAAAT+TGG | - | chr6_4:2046033-2046052 | None:intergenic | 35.0% | |
| TATCACTGAATGAATGCTCT+TGG | + | chr6_4:2046101-2046120 | Msa0970520:intron | 35.0% | |
| AAAATTCCTGTCAGACAGTT+TGG | + | chr6_4:2046168-2046187 | Msa0970520:intron | 35.0% | |
| AAATTCCTGTCAGACAGTTT+GGG | + | chr6_4:2046169-2046188 | Msa0970520:intron | 35.0% | |
| TGAGAACTTAATCCCCAAAA+AGG | - | chr6_4:2046230-2046249 | None:intergenic | 35.0% | |
| TTGATTAGGATATGGCTTGA+CGG | + | chr6_4:2046527-2046546 | Msa0970520:intron | 35.0% | |
| ATAATGATACACGCAAAGAG+TGG | + | chr6_4:2046750-2046769 | Msa0970520:intron | 35.0% | |
| ! | TTGATGAGCTTCATAGCTTT+TGG | + | chr6_4:2046837-2046856 | Msa0970520:intron | 35.0% |
| GAGAAAGCAACTTAGGAATT+TGG | + | chr6_4:2046912-2046931 | Msa0970520:intron | 35.0% | |
| ATTAGTACACTGATAAGCTG+AGG | - | chr6_4:2046956-2046975 | None:intergenic | 35.0% | |
| AGCAAGCTCAGCATATAATT+TGG | + | chr6_4:2047308-2047327 | Msa0970520:intron | 35.0% | |
| AGTGAAGATGAATGAATGCA+TGG | + | chr6_4:2047436-2047455 | Msa0970520:intron | 35.0% | |
| AATGCATGGTAATAGAGAGA+GGG | + | chr6_4:2047450-2047469 | Msa0970520:intron | 35.0% | |
| TGTGAAAAGAAGAGTGAAGA+TGG | + | chr6_4:2047496-2047515 | Msa0970520:intron | 35.0% | |
| TTTCATACTCTTGAAACTGC+AGG | + | chr6_4:2047662-2047681 | Msa0970520:intron | 35.0% | |
| TCCTTGAAAGACATGAAATC+AGG | + | chr6_4:2047998-2048017 | Msa0970520:CDS | 35.0% | |
| CCTTGAAAGACATGAAATCA+GGG | + | chr6_4:2047999-2048018 | Msa0970520:CDS | 35.0% | |
| TCTGTTGTCATGAAAGTGAA+CGG | + | chr6_4:2048097-2048116 | Msa0970520:CDS | 35.0% | |
| ! | ACGGATTTACTCATTTTCGA+AGG | + | chr6_4:2048116-2048135 | Msa0970520:CDS | 35.0% |
| AGACGTTGCTACAAAAATTC+TGG | - | chr6_4:2048363-2048382 | None:intergenic | 35.0% | |
| TTGTAGCAACGTCTATTGAA+AGG | + | chr6_4:2048369-2048388 | Msa0970520:three_prime_UTR | 35.0% | |
| GCTATCTATCTCAGTTAGAA+AGG | + | chr6_4:2048391-2048410 | Msa0970520:three_prime_UTR | 35.0% | |
| CATTGTTGCTGCAGATTACT+AGG | - | chr6_4:2042564-2042583 | None:intergenic | 40.0% | |
| AATGAAGAGATTGACGGCTA+TGG | - | chr6_4:2042613-2042632 | None:intergenic | 40.0% | |
| !!! | GATTGAAGTGTGGTTTTGGA+TGG | - | chr6_4:2042638-2042657 | None:intergenic | 40.0% |
| ! | GTGAGATTGAAGTGTGGTTT+TGG | - | chr6_4:2042642-2042661 | None:intergenic | 40.0% |
| !! | GAAAGTGTTACCTTGGAAGA+AGG | - | chr6_4:2042669-2042688 | None:intergenic | 40.0% |
| ! | GAAACTAGAAAAAGGTGTGG+TGG | + | chr6_4:2043365-2043384 | Msa0970520:intron | 40.0% |
| ATGTCTTCAATCTGCAGTGT+TGG | + | chr6_4:2043535-2043554 | Msa0970520:intron | 40.0% | |
| !! | AGATTGGTGCAATAGTGGAT+CGG | + | chr6_4:2043850-2043869 | Msa0970520:intron | 40.0% |
| CAAGAAACTGCAAAAAGGTG+TGG | + | chr6_4:2044072-2044091 | Msa0970520:intron | 40.0% | |
| GTTGTGAATAGAGACTGTAG+TGG | + | chr6_4:2044214-2044233 | Msa0970520:intron | 40.0% | |
| GTTGTGAATAGAGACTGTAG+TGG | + | chr6_4:2044214-2044233 | Msa0970520:intron | 40.0% | |
| ! | GCACCGACACTTCATATTAA+AGG | - | chr6_4:2045100-2045119 | None:intergenic | 40.0% |
| GCACCGAAACTTCATATTGA+AGG | - | chr6_4:2045350-2045369 | None:intergenic | 40.0% | |
| TTGTTCCACGATACACTACT+TGG | + | chr6_4:2045484-2045503 | Msa0970520:intron | 40.0% | |
| TTGTACCAAGTAGTGTATCG+TGG | - | chr6_4:2045492-2045511 | None:intergenic | 40.0% | |
| CCAAATGACTTCAGCCATTT+AGG | - | chr6_4:2045617-2045636 | None:intergenic | 40.0% | |
| CCTAAATGGCTGAAGTCATT+TGG | + | chr6_4:2045614-2045633 | Msa0970520:intron | 40.0% | |
| TAGAAAGATTGGCGCAATAG+TGG | + | chr6_4:2045673-2045692 | Msa0970520:intron | 40.0% | |
| !!! | CAATCCTTTGAGCTAGCTTT+TGG | + | chr6_4:2045921-2045940 | Msa0970520:intron | 40.0% |
| ! | CAGTGGTCAACCAATTTTAG+TGG | + | chr6_4:2046020-2046039 | Msa0970520:intron | 40.0% |
| ! | GAATGCTCTTGGTTAGTTGT+AGG | + | chr6_4:2046112-2046131 | Msa0970520:intron | 40.0% |
| ! | GTGCTTTGTGCTTTGTTACT+TGG | - | chr6_4:2046294-2046313 | None:intergenic | 40.0% |
| ! | AAATTAACCTGGCTTTCCAC+AGG | + | chr6_4:2046366-2046385 | Msa0970520:intron | 40.0% |
| AAAATCCATATGGGAACCTG+TGG | - | chr6_4:2046385-2046404 | None:intergenic | 40.0% | |
| CACGCAACAACTATCAATAG+AGG | + | chr6_4:2046434-2046453 | Msa0970520:intron | 40.0% | |
| TGTCAAAACAAGTAAAGGCG+TGG | + | chr6_4:2046580-2046599 | Msa0970520:intron | 40.0% | |
| ATAGGGAGAGAAAGCAACTT+AGG | + | chr6_4:2046905-2046924 | Msa0970520:intron | 40.0% | |
| AGTGAGAATGGTATCGTCTA+AGG | - | chr6_4:2047243-2047262 | None:intergenic | 40.0% | |
| GAACTGCGAGAAAATTGTGA+AGG | + | chr6_4:2047358-2047377 | Msa0970520:intron | 40.0% | |
| GAATGCATGGTAATAGAGAG+AGG | + | chr6_4:2047449-2047468 | Msa0970520:intron | 40.0% | |
| ATGCATGGTAATAGAGAGAG+GGG | + | chr6_4:2047451-2047470 | Msa0970520:intron | 40.0% | |
| AAGATGGTTGACCCCTAATA+AGG | + | chr6_4:2047512-2047531 | Msa0970520:intron | 40.0% | |
| GAAACTGCAGGATATGTTAG+AGG | + | chr6_4:2047674-2047693 | Msa0970520:intron | 40.0% | |
| !!! | AGGATTTTCGAGTGCAAGTT+GGG | + | chr6_4:2047694-2047713 | Msa0970520:CDS | 40.0% |
| GAGAATAATGCTGAGATTGG+TGG | + | chr6_4:2047785-2047804 | Msa0970520:CDS | 40.0% | |
| TGGTGGAAATTCCAGGAAAA+TGG | + | chr6_4:2047802-2047821 | Msa0970520:CDS | 40.0% | |
| ! | TCTCACAAAGTCCATTTTCC+TGG | - | chr6_4:2047816-2047835 | None:intergenic | 40.0% |
| ! | AGGAAAATGGACTTTGTGAG+AGG | + | chr6_4:2047815-2047834 | Msa0970520:CDS | 40.0% |
| !! | GATGAAAAGAGTGTTATGGG+AGG | + | chr6_4:2047848-2047867 | Msa0970520:CDS | 40.0% |
| CATCATGCTGGAAATGATAC+AGG | - | chr6_4:2047886-2047905 | None:intergenic | 40.0% | |
| GAACAAAATCAGCATCATGC+TGG | - | chr6_4:2047898-2047917 | None:intergenic | 40.0% | |
| AGAATCGGTCACTGTAACAA+AGG | - | chr6_4:2047945-2047964 | None:intergenic | 40.0% | |
| ! | GTTACAGTGACCGATTCTAA+AGG | + | chr6_4:2047947-2047966 | Msa0970520:CDS | 40.0% |
| CCCTGATTTCATGTCTTTCA+AGG | - | chr6_4:2048002-2048021 | None:intergenic | 40.0% | |
| AATCAGGGCAAAAGCTTTCT+AGG | + | chr6_4:2048014-2048033 | Msa0970520:CDS | 40.0% | |
| AAAGGCAAGCAATATTGAGC+TGG | + | chr6_4:2048140-2048159 | Msa0970520:CDS | 40.0% | |
| !! | AACTAGATACGTCGACTCTT+TGG | - | chr6_4:2048256-2048275 | None:intergenic | 40.0% |
| AGATTGACGGCTATGGATGA+AGG | - | chr6_4:2042606-2042625 | None:intergenic | 45.0% | |
| AGTGTTACCTTGGAAGAAGG+TGG | - | chr6_4:2042666-2042685 | None:intergenic | 45.0% | |
| !! | ATCAGTGTCGGTGTTTGTGT+TGG | - | chr6_4:2042928-2042947 | None:intergenic | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | - | chr6_4:2043286-2043305 | None:intergenic | 45.0% |
| AGTTGTAAAGCGCAGATTGC+AGG | - | chr6_4:2043758-2043777 | None:intergenic | 45.0% | |
| !! | GTGCAATAGTGGATCGGATT+AGG | + | chr6_4:2043856-2043875 | Msa0970520:intron | 45.0% |
| ! | GAAACTGCAAAAAGGTGTGG+TGG | + | chr6_4:2044075-2044094 | Msa0970520:intron | 45.0% |
| !! | GCGCAATAGTGGATACGATT+AGG | + | chr6_4:2045684-2045703 | Msa0970520:intron | 45.0% |
| ACTCCCAAAAGCTAGCTCAA+AGG | - | chr6_4:2045928-2045947 | None:intergenic | 45.0% | |
| ! | TTGGCTCTTATCAAGTCTGC+TGG | + | chr6_4:2045980-2045999 | Msa0970520:intron | 45.0% |
| GTAGAGTGCAGGATATAGAG+TGG | + | chr6_4:2046803-2046822 | Msa0970520:intron | 45.0% | |
| TTTGGCATGTCCTAGTGTCA+CGG | + | chr6_4:2046930-2046949 | Msa0970520:intron | 45.0% | |
| TTCGGAGTGAAGACCCAATT+TGG | + | chr6_4:2046977-2046996 | Msa0970520:intron | 45.0% | |
| CACAGTTCATGACTCATGAG+AGG | - | chr6_4:2047107-2047126 | None:intergenic | 45.0% | |
| CGTCACATTGCTTTGCTAGT+TGG | - | chr6_4:2047134-2047153 | None:intergenic | 45.0% | |
| ATGTGACGTGTGTTGTATCC+AGG | + | chr6_4:2047146-2047165 | Msa0970520:intron | 45.0% | |
| !! | TATGCTGAGCTTGCTGTTGA+AGG | - | chr6_4:2047303-2047322 | None:intergenic | 45.0% |
| !!! | GAGGATTTTCGAGTGCAAGT+TGG | + | chr6_4:2047693-2047712 | Msa0970520:CDS | 45.0% |
| !!! | GGATTTTCGAGTGCAAGTTG+GGG | + | chr6_4:2047695-2047714 | Msa0970520:CDS | 45.0% |
| CGGGAGAATAATGCTGAGAT+TGG | + | chr6_4:2047782-2047801 | Msa0970520:CDS | 45.0% | |
| CTGAGATTGGTGGAAATTCC+AGG | + | chr6_4:2047795-2047814 | Msa0970520:CDS | 45.0% | |
| ! | GTAAAACTTAGTGGCTCTGC+TGG | + | chr6_4:2047974-2047993 | Msa0970520:CDS | 45.0% |
| GCAAGCAATATTGAGCTGGA+GGG | + | chr6_4:2048144-2048163 | Msa0970520:CDS | 45.0% | |
| !! | GAGGGATTTACTGATTCTCG+AGG | + | chr6_4:2048166-2048185 | Msa0970520:CDS | 45.0% |
| !!! | TTTTATCATTATTTTTTTAT+TGG | + | chr6_4:2042725-2042744 | Msa0970520:intron | 5.0% |
| !!! | TTTATCATTATTTTTTTATT+GGG | + | chr6_4:2042726-2042745 | Msa0970520:intron | 5.0% |
| !!! | ATTTTTAATCTAAAATTTTA+AGG | - | chr6_4:2046634-2046653 | None:intergenic | 5.0% |
| GGTGGTGTGAGATTGAAGTG+TGG | - | chr6_4:2042648-2042667 | None:intergenic | 50.0% | |
| TCTCACACCACCTTCTTCCA+AGG | + | chr6_4:2042656-2042675 | Msa0970520:CDS | 50.0% | |
| GTACCTAGGTTGTGTGTGCT+TGG | + | chr6_4:2043902-2043921 | Msa0970520:intron | 50.0% | |
| GTCAGTGTCAGTGTCAGCAT+CGG | - | chr6_4:2044279-2044298 | None:intergenic | 50.0% | |
| AGCAGTGTCCACGTTTGTGT+CGG | - | chr6_4:2044752-2044771 | None:intergenic | 50.0% | |
| AAACAGGCCCATACTCACCA+GGG | + | chr6_4:2045053-2045072 | Msa0970520:intron | 50.0% | |
| CAACACACCCTGGTGAGTAT+GGG | - | chr6_4:2045063-2045082 | None:intergenic | 50.0% | |
| TCAACACACCCTGGTGAGTA+TGG | - | chr6_4:2045064-2045083 | None:intergenic | 50.0% | |
| TGTTGTCAAGCGCAGATTGC+AGG | - | chr6_4:2045588-2045607 | None:intergenic | 50.0% | |
| GCTTTCCACAGGTTCCCATA+TGG | + | chr6_4:2046377-2046396 | Msa0970520:intron | 50.0% | |
| GTGACATCAGTGTAGAGTGC+AGG | + | chr6_4:2046792-2046811 | Msa0970520:intron | 50.0% | |
| ! | AGTGCAAGTTGGGGTTTGAG+CGG | + | chr6_4:2047704-2047723 | Msa0970520:CDS | 50.0% |
| TGTGAATGCAAGTGCTCGTC+CGG | + | chr6_4:2047745-2047764 | Msa0970520:CDS | 50.0% | |
| GTATGCTGCTGAAGCAACTG+CGG | + | chr6_4:2048036-2048055 | Msa0970520:CDS | 50.0% | |
| GGACGGAGATCTAGAGGTTT+AGG | + | chr6_4:2048067-2048086 | Msa0970520:CDS | 50.0% | |
| GGCAAGCAATATTGAGCTGG+AGG | + | chr6_4:2048143-2048162 | Msa0970520:CDS | 50.0% | |
| AGCAATATTGAGCTGGAGGG+AGG | + | chr6_4:2048147-2048166 | Msa0970520:CDS | 50.0% | |
| GCAATATTGAGCTGGAGGGA+GGG | + | chr6_4:2048148-2048167 | Msa0970520:CDS | 50.0% | |
| ACAACTCGTCGTCCCCATAA+TGG | + | chr6_4:2048220-2048239 | Msa0970520:CDS | 50.0% | |
| TGGCAGTCTGCAGCCATTAT+GGG | - | chr6_4:2048236-2048255 | None:intergenic | 50.0% | |
| TTGGCAGTCTGCAGCCATTA+TGG | - | chr6_4:2048237-2048256 | None:intergenic | 50.0% | |
| GAGCCAAGCACACACAACCT+AGG | - | chr6_4:2043908-2043927 | None:intergenic | 55.0% | |
| TGTTGTCAAGCGCAGATCGC+AGG | - | chr6_4:2044619-2044638 | None:intergenic | 55.0% | |
| !! | GTGAAGCACCGACACAAACG+TGG | + | chr6_4:2044741-2044760 | Msa0970520:intron | 55.0% |
| CTGGTGAGTATGGGCCTGTT+TGG | - | chr6_4:2045054-2045073 | None:intergenic | 55.0% | |
| CAAACAGGCCCATACTCACC+AGG | + | chr6_4:2045052-2045071 | Msa0970520:intron | 55.0% | |
| ! | TCGAAGTGCTCAACACACCC+TGG | - | chr6_4:2045073-2045092 | None:intergenic | 55.0% |
| CACTGCCCAAACTGTCTGAC+AGG | - | chr6_4:2046177-2046196 | None:intergenic | 55.0% | |
| ATGGGAACCTGTGGAAAGCC+AGG | - | chr6_4:2046376-2046395 | None:intergenic | 55.0% | |
| TAAGCTGAGGCCGTGACACT+AGG | - | chr6_4:2046943-2046962 | None:intergenic | 55.0% | |
| ! | GTGCAAGTTGGGGTTTGAGC+GGG | + | chr6_4:2047705-2047724 | Msa0970520:CDS | 55.0% |
| ! | GTGCTCGTCCGGATTTTCTG+CGG | + | chr6_4:2047756-2047775 | Msa0970520:CDS | 55.0% |
| ! | TGCTCGTCCGGATTTTCTGC+GGG | + | chr6_4:2047757-2047776 | Msa0970520:CDS | 55.0% |
| TGCTGAAGCAACTGCGGAAG+TGG | + | chr6_4:2048042-2048061 | Msa0970520:CDS | 55.0% | |
| GAAGCAACTGCGGAAGTGGT+TGG | + | chr6_4:2048046-2048065 | Msa0970520:CDS | 55.0% | |
| CAACTGCGGAAGTGGTTGGA+CGG | + | chr6_4:2048050-2048069 | Msa0970520:CDS | 55.0% | |
| GTGGTTGGACGGAGATCTAG+AGG | + | chr6_4:2048061-2048080 | Msa0970520:CDS | 55.0% | |
| GGCAGTCTGCAGCCATTATG+GGG | - | chr6_4:2048235-2048254 | None:intergenic | 55.0% | |
| ! | GCACGTGGGTTGTGTGTGCT+TGG | + | chr6_4:2045729-2045748 | Msa0970520:intron | 60.0% |
| ! | CAAGTTGGGGTTTGAGCGGG+AGG | + | chr6_4:2047708-2047727 | Msa0970520:CDS | 60.0% |
| ! | GCTCGTCCGGATTTTCTGCG+GGG | + | chr6_4:2047758-2047777 | Msa0970520:CDS | 60.0% |
| ! | GTCCGGATTTTCTGCGGGGT+CGG | + | chr6_4:2047762-2047781 | Msa0970520:CDS | 60.0% |
| ! | TCCGGATTTTCTGCGGGGTC+GGG | + | chr6_4:2047763-2047782 | Msa0970520:CDS | 60.0% |
| TCCCGACCCCGCAGAAAATC+CGG | - | chr6_4:2047767-2047786 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 2042490 | 2048441 | 2042490 | ID=Msa0970520;Name=Msa0970520 |
| chr6_4 | mRNA | 2042490 | 2048441 | 2042490 | ID=Msa0970520-mRNA-1;Parent=Msa0970520;Name=Msa0970520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=91|1|1|1|1|1|2|168|228 |
| chr6_4 | exon | 2042490 | 2042677 | 2042490 | ID=Msa0970520-mRNA-1:exon:966;Parent=Msa0970520-mRNA-1 |
| chr6_4 | exon | 2047684 | 2048441 | 2047684 | ID=Msa0970520-mRNA-1:exon:967;Parent=Msa0970520-mRNA-1 |
| chr6_4 | five_prime_UTR | 2042490 | 2042580 | 2042490 | ID=Msa0970520-mRNA-1:five_prime_utr;Parent=Msa0970520-mRNA-1 |
| chr6_4 | CDS | 2042581 | 2042677 | 2042581 | ID=Msa0970520-mRNA-1:cds;Parent=Msa0970520-mRNA-1 |
| chr6_4 | CDS | 2047684 | 2048273 | 2047684 | ID=Msa0970520-mRNA-1:cds;Parent=Msa0970520-mRNA-1 |
| chr6_4 | three_prime_UTR | 2048274 | 2048441 | 2048274 | ID=Msa0970520-mRNA-1:three_prime_utr;Parent=Msa0970520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
