AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1017430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017430 MtrunA17_Chr7g0233311 85.945 619 87 0 1 619 1 619 0.0 1099
Msa1017430 MtrunA17_Chr7g0233301 80.744 618 88 1 1 618 1 587 0.0 1012
Msa1017430 MtrunA17_Chr2g0298851 73.183 619 163 3 1 618 1 617 0.0 942
Msa1017430 MtrunA17_Chr7g0221661 72.358 615 168 2 1 615 1 613 0.0 934
Msa1017430 MtrunA17_Chr2g0293581 72.097 620 170 3 1 618 1 619 0.0 924
Msa1017430 MtrunA17_Chr4g0040931 72.549 612 167 1 1 612 1 611 0.0 917
Msa1017430 MtrunA17_Chr2g0298861 70.365 631 172 4 1 618 1 629 0.0 915
Msa1017430 MtrunA17_Chr5g0427901 71.338 628 167 3 1 617 1 626 0.0 914
Msa1017430 MtrunA17_Chr7g0223721 70.874 618 179 1 1 618 1 617 0.0 907
Msa1017430 MtrunA17_Chr7g0223851 70.598 619 179 2 1 618 10 626 0.0 901
Msa1017430 MtrunA17_Chr7g0225671 71.195 611 172 3 9 618 16 623 0.0 894
Msa1017430 MtrunA17_Chr7g0223801 69.854 617 182 3 1 617 1 613 0.0 893
Msa1017430 MtrunA17_Chr7g0217971 70.388 618 156 3 1 618 1 591 0.0 881
Msa1017430 MtrunA17_Chr2g0287631 70.227 618 184 0 1 618 1 618 0.0 880
Msa1017430 MtrunA17_Chr7g0223821 69.021 623 179 5 1 615 1 617 0.0 851
Msa1017430 MtrunA17_Chr7g0223821 45.238 84 44 1 534 615 620 703 8.79e-13 71.6
Msa1017430 MtrunA17_Chr4g0012541 66.397 619 196 3 1 618 1 608 0.0 839
Msa1017430 MtrunA17_Chr7g0223181 66.236 619 203 5 1 617 1 615 0.0 827
Msa1017430 MtrunA17_Chr7g0223831 66.883 616 173 4 1 615 1 586 0.0 824
Msa1017430 MtrunA17_Chr2g0296391 74.432 528 135 0 1 528 1 528 0.0 822
Msa1017430 MtrunA17_Chr4g0031321 64.782 619 212 5 1 617 1 615 0.0 815
Msa1017430 MtrunA17_Chr7g0223711 63.695 617 222 2 1 617 1 615 0.0 815
Msa1017430 MtrunA17_Chr4g0031301 64.943 619 211 5 1 617 1 615 0.0 814
Msa1017430 MtrunA17_Chr8g0390821 62.687 670 180 8 1 617 1 653 0.0 814
Msa1017430 MtrunA17_Chr7g0223291 64.620 619 213 5 1 617 1 615 0.0 811
Msa1017430 MtrunA17_Chr8g0350731 64.019 617 219 2 1 617 29 642 0.0 811
Msa1017430 MtrunA17_Chr7g0223751 63.857 617 220 2 1 617 1 614 0.0 809
Msa1017430 MtrunA17_Chr7g0262821 64.459 619 214 5 1 617 1 615 0.0 808
Msa1017430 MtrunA17_Chr7g0215261 65.478 617 175 5 1 615 1 581 0.0 808
Msa1017430 MtrunA17_Chr7g0228281 65.751 619 164 5 1 618 62 633 0.0 807
Msa1017430 MtrunA17_Chr7g0223031 63.889 612 218 2 1 612 1 609 0.0 804
Msa1017430 MtrunA17_Chr7g0223621 63.312 616 223 2 1 616 1 613 0.0 803
Msa1017430 MtrunA17_Chr7g0223731 61.750 617 233 2 1 617 1 614 0.0 788
Msa1017430 MtrunA17_Chr7g0223781 63.577 615 220 3 1 615 1 611 0.0 786
Msa1017430 MtrunA17_Chr7g0223741 63.727 601 215 2 1 601 1 598 0.0 785
Msa1017430 MtrunA17_Chr4g0073741 62.359 619 226 6 1 617 1 614 0.0 779
Msa1017430 MtrunA17_Chr7g0248151 63.005 619 225 3 1 617 1 617 0.0 771
Msa1017430 MtrunA17_Chr7g0223701 61.290 620 230 5 1 612 1 618 0.0 769
Msa1017430 MtrunA17_Chr7g0248131 61.675 621 232 5 1 617 1 619 0.0 768
Msa1017430 MtrunA17_Chr7g0223631 61.912 617 218 4 1 617 1 600 0.0 760
Msa1017430 MtrunA17_Chr2g0293601 68.015 519 132 1 1 519 1 485 0.0 721
Msa1017430 MtrunA17_Chr2g0331381 64.007 539 131 3 10 548 7 482 0.0 695
Msa1017430 MtrunA17_Chr6g0462681 56.149 618 266 4 1 617 1 614 0.0 687
Msa1017430 MtrunA17_Chr7g0223541 61.651 545 205 4 74 617 31 572 0.0 687
Msa1017430 MtrunA17_Chr7g0223681 63.188 527 191 2 91 617 2 525 0.0 681
Msa1017430 MtrunA17_Chr6g0462601 56.796 618 262 4 1 617 1 614 0.0 675
Msa1017430 MtrunA17_Chr1g0166551 57.447 611 146 5 9 618 5 502 0.0 672
Msa1017430 MtrunA17_Chr6g0462711 54.797 615 269 5 9 617 10 621 0.0 645
Msa1017430 MtrunA17_Chr2g0284681 57.932 561 227 4 9 562 8 566 0.0 642
Msa1017430 MtrunA17_Chr2g0293561 78.780 377 80 0 1 377 1 377 0.0 639
Msa1017430 MtrunA17_Chr6g0462641 52.970 623 283 5 1 617 1 619 0.0 633
Msa1017430 MtrunA17_Chr8g0388761 54.344 587 257 8 7 589 36 615 0.0 624
Msa1017430 MtrunA17_Chr8g0388671 54.514 587 256 8 7 589 36 615 0.0 624
Msa1017430 MtrunA17_Chr6g0462771 53.659 615 275 5 9 617 9 619 0.0 623
Msa1017430 MtrunA17_Chr6g0462611 53.493 544 250 3 74 617 22 562 0.0 573
Msa1017430 MtrunA17_Chr2g0299821 64.467 394 136 2 1 392 1 392 0.0 526
Msa1017430 MtrunA17_Chr2g0299821 51.087 92 36 3 453 536 390 480 4.62e-17 84.3
Msa1017430 MtrunA17_Chr2g0293271 60.412 437 103 3 21 457 43 409 0.0 521
Msa1017430 MtrunA17_Chr2g0299921 68.274 394 121 2 3 396 1023 1412 1.37e-180 557
Msa1017430 MtrunA17_Chr2g0299921 66.751 394 126 3 3 395 1407 1796 2.10e-167 521
Msa1017430 MtrunA17_Chr2g0299851 67.179 390 124 2 1 390 1030 1415 8.03e-179 544
Msa1017430 MtrunA17_Chr2g0299791 66.581 389 126 2 1 389 1034 1418 6.30e-176 536
Msa1017430 MtrunA17_Chr1g0151991 78.351 291 63 0 1 291 1 291 7.61e-168 479
Msa1017430 MtrunA17_Chr2g0299881 65.974 385 123 3 9 389 1038 1418 2.00e-166 513
Msa1017430 MtrunA17_Chr2g0299881 56.164 73 30 1 180 250 1403 1475 2.53e-17 86.7
Msa1017430 MtrunA17_Chr2g0279901 46.299 581 282 13 10 582 57 615 2.49e-163 483
Msa1017430 MtrunA17_Chr6g0462861 43.891 622 317 10 6 617 6 605 1.96e-160 474
Msa1017430 MtrunA17_Chr7g0245521 78.388 273 59 0 1 273 1 273 2.20e-157 452
Msa1017430 MtrunA17_Chr4g0049501 44.940 583 288 14 10 582 54 613 4.58e-156 464
Msa1017430 MtrunA17_Chr7g0245531 69.329 313 94 2 305 617 2 312 2.64e-151 438
Msa1017430 MtrunA17_Chr2g0277021 45.081 559 285 11 10 562 72 614 1.56e-150 451
Msa1017430 MtrunA17_Chr7g0223761 58.047 379 115 3 241 618 3 338 4.56e-145 424
Msa1017430 MtrunA17_Chr1g0152001 63.333 300 107 2 315 614 1 297 3.34e-130 385
Msa1017430 MtrunA17_Chr1g0188611 63.300 297 101 2 322 618 1 289 3.90e-115 345
Msa1017430 MtrunA17_Chr1g0188601 82.199 191 34 0 92 282 1 191 2.46e-109 327
Msa1017430 MtrunA17_Chr6g0462631 52.077 313 107 3 100 411 22 292 3.85e-98 301
Msa1017430 MtrunA17_Chr7g0223671 72.340 188 52 0 74 261 8 195 1.05e-97 297
Msa1017430 MtrunA17_Chr6g0462751 48.555 346 118 4 67 409 12 300 4.01e-97 300
Msa1017430 MtrunA17_Chr7g0223771 78.431 153 33 0 93 245 1 153 7.26e-84 259
Msa1017430 MtrunA17_Chr5g0394391 35.516 504 297 14 9 495 29 521 9.04e-82 268
Msa1017430 MtrunA17_Chr7g0245541 62.687 201 73 2 417 617 1 199 2.55e-78 246
Msa1017430 MtrunA17_Chr7g0223861 82.443 131 23 0 78 208 4 134 1.08e-73 232
Msa1017430 MtrunA17_Chr4g0004331 33.827 405 261 6 10 411 4 404 1.50e-73 252
Msa1017430 MtrunA17_Chr4g0046881 78.723 141 27 1 135 275 14 151 2.30e-73 232
Msa1017430 MtrunA17_Chr3g0098761 29.878 492 331 8 10 497 4 485 4.07e-70 241
Msa1017430 MtrunA17_Chr2g0331901 32.110 436 277 8 10 431 4 434 5.26e-70 243
Msa1017430 MtrunA17_Chr6g0462791 61.932 176 66 1 108 283 1 175 1.96e-69 223
Msa1017430 MtrunA17_Chr5g0444001 32.401 429 278 6 10 431 4 427 1.02e-68 233
Msa1017430 MtrunA17_Chr4g0064621 33.529 510 303 17 9 492 140 639 4.34e-58 207
Msa1017430 MtrunA17_Chr5g0394221 38.176 296 164 6 299 588 69 351 1.44e-54 189
Msa1017430 MtrunA17_Chr3g0120101 27.186 526 345 11 7 499 24 544 5.42e-54 198
Msa1017430 MtrunA17_Chr6g0481391 70.492 122 33 1 38 159 13 131 2.56e-52 176
Msa1017430 MtrunA17_Chr6g0462701 53.801 171 55 1 100 270 22 168 7.36e-52 176
Msa1017430 MtrunA17_Chr4g0060241 27.811 507 328 14 10 498 21 507 8.22e-47 173
Msa1017430 MtrunA17_Chr5g0442171 33.934 333 192 12 170 488 1 319 1.85e-44 161
Msa1017430 MtrunA17_Chr4g0046871 75.758 99 24 0 339 437 9 107 2.76e-44 153
Msa1017430 MtrunA17_Chr6g0462691 52.817 142 66 1 322 462 1 142 9.59e-43 151
Msa1017430 MtrunA17_Chr5g0394231 36.404 228 92 5 74 299 5 181 3.49e-37 136
Msa1017430 MtrunA17_Chr1g0188591 80.822 73 14 0 1 73 1 73 1.63e-35 128
Msa1017430 MtrunA17_Chr7g0223691 75.342 73 18 0 1 73 1 73 1.52e-32 119
Msa1017430 MtrunA17_Chr7g0223871 48.819 127 65 0 492 618 7 133 5.28e-32 120
Msa1017430 MtrunA17_Chr6g0481381 71.622 74 21 0 176 249 1 74 5.65e-32 122
Msa1017430 MtrunA17_Chr6g0481381 56.842 95 41 0 516 610 75 169 1.48e-29 115
Msa1017430 MtrunA17_Chr7g0223791 47.727 132 59 2 441 572 58 179 1.78e-30 117
Msa1017430 MtrunA17_Chr7g0223791 67.901 81 18 3 56 136 18 90 8.35e-27 107
Msa1017430 MtrunA17_Chr7g0223881 65.854 82 27 1 281 362 2 82 4.99e-29 110
Msa1017430 MtrunA17_Chr6g0462621 67.123 73 22 1 1 73 1 71 9.54e-27 103
Msa1017430 MtrunA17_Chr7g0223661 42.241 116 24 1 315 430 1 73 8.41e-20 84.3
Msa1017430 MtrunA17_Chr7g0221651 46.429 84 45 0 215 298 1 84 2.30e-19 83.2
Msa1017430 MtrunA17_Chr6g0462801 59.091 66 22 1 322 382 1 66 8.59e-17 75.5
Msa1017430 MtrunA17_Chr2g0299891 76.744 43 10 0 315 357 1 43 1.63e-16 74.3
Msa1017430 MtrunA17_Chr5g0442161 32.680 153 96 4 9 157 28 177 1.87e-16 77.8
Msa1017430 MtrunA17_Chr4g0064651 40.860 93 53 2 397 488 29 120 2.96e-16 75.5
Msa1017430 MtrunA17_Chr2g0284661 50.602 83 40 1 368 449 61 143 1.30e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1017430 AT3G12580.1 64.297 619 215 5 1 617 1 615 0.0 809
Msa1017430 AT5G02500.1 63.651 619 219 5 1 617 1 615 0.0 804
Msa1017430 AT3G09440.1 63.489 619 220 5 1 617 1 615 0.0 797
Msa1017430 AT3G09440.4 63.489 619 220 5 1 617 1 615 0.0 797
Msa1017430 AT3G09440.2 63.489 619 220 5 1 617 1 615 0.0 797
Msa1017430 AT3G09440.3 63.489 619 220 5 1 617 1 615 0.0 797
Msa1017430 AT5G02490.1 63.328 619 221 5 1 617 1 615 0.0 796
Msa1017430 AT1G56410.1 63.813 619 216 6 1 617 1 613 0.0 792
Msa1017430 AT1G16030.1 61.551 619 231 6 1 617 1 614 0.0 771
Msa1017430 AT5G28540.1 54.160 613 269 9 7 615 35 639 0.0 635
Msa1017430 AT5G42020.1 53.997 613 270 9 7 615 35 639 0.0 634
Msa1017430 AT5G42020.3 53.997 613 270 9 7 615 40 644 0.0 633
Msa1017430 AT1G09080.1 53.958 619 264 9 7 613 50 659 0.0 625
Msa1017430 AT1G09080.2 53.958 619 264 9 7 613 40 649 0.0 625
Msa1017430 AT5G02500.2 73.265 389 102 1 1 389 1 387 0.0 607
Msa1017430 AT5G42020.2 49.592 613 242 11 7 615 35 584 0.0 555
Msa1017430 AT5G09590.1 44.026 611 302 15 10 612 60 638 4.81e-153 457
Msa1017430 AT4G37910.1 46.127 581 284 13 10 582 55 614 5.57e-152 454
Msa1017430 AT4G37910.2 46.127 581 284 13 10 582 55 614 5.57e-152 454
Msa1017430 AT4G24280.1 44.118 578 299 12 10 581 81 640 3.39e-150 451
Msa1017430 AT5G49910.1 45.081 559 285 11 10 562 81 623 3.16e-148 446
Msa1017430 AT2G32120.1 34.195 503 298 13 9 497 30 513 2.35e-74 248
Msa1017430 AT2G32120.2 34.195 503 298 13 9 497 30 513 2.35e-74 248
Msa1017430 AT1G79930.2 32.075 477 300 9 10 469 4 473 2.40e-73 251
Msa1017430 AT1G79920.3 32.495 477 298 9 10 469 4 473 3.59e-73 249
Msa1017430 AT1G79920.2 32.495 477 298 9 10 469 4 473 3.59e-73 249
Msa1017430 AT1G79920.4 32.495 477 298 9 10 469 4 473 3.59e-73 249
Msa1017430 AT1G79920.1 32.495 477 298 9 10 469 4 473 4.14e-73 249
Msa1017430 AT1G79930.1 32.075 477 300 9 10 469 4 473 5.95e-73 251
Msa1017430 AT1G11660.4 33.663 404 260 7 10 410 4 402 6.34e-70 241
Msa1017430 AT1G11660.3 33.663 404 260 7 10 410 4 402 6.34e-70 241
Msa1017430 AT1G11660.1 33.663 404 260 7 10 410 4 402 6.34e-70 241
Msa1017430 AT1G11660.2 34.239 368 236 5 46 410 1 365 1.87e-63 223
Msa1017430 AT4G16660.2 25.714 525 355 10 6 499 47 567 2.21e-55 202
Msa1017430 AT4G16660.1 25.714 525 355 10 6 499 23 543 3.10e-55 202

Find 139 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTCTTTCACTCTTTC+TGG -0.002130 7_1:+36592839 Msa1017430:CDS
TACTGTATTCTGCTTCTTTA+AGG 0.110951 7_1:+36593452 Msa1017430:three_prime_UTR
CTCAACCTCCTTAGGGCTTT+TGG 0.111076 7_1:-36592245 None:intergenic
TGAGGTCGATGCTTTGTTTC+AGG 0.236745 7_1:+36592322 Msa1017430:CDS
CAAAATCTTTAAAACGAAAA+TGG 0.243676 7_1:-36590527 None:intergenic
TCCTTGTTGGTGGATCTTCT+AGG 0.269778 7_1:+36592480 Msa1017430:CDS
TGCAATAGTTGCTGCACTTT+AGG 0.278166 7_1:-36592506 None:intergenic
GCAAGTGACAATCATCTTCT+TGG 0.280969 7_1:+36592821 Msa1017430:CDS
ACAGATGCCAAGAGGCTAAT+TGG 0.308993 7_1:+36591669 Msa1017430:intron
ACGCAGTTCTCAACCTCCTT+AGG 0.321307 7_1:-36592253 None:intergenic
AGTATGTATGAGCGCATTAT+AGG 0.322524 7_1:+36593277 Msa1017430:CDS
ACATCGATCAACACCAAGTT+TGG 0.331418 7_1:-36592638 None:intergenic
CGCTTATGGCGCAGCTGTCC+AGG 0.334122 7_1:+36592583 Msa1017430:CDS
GGAGATTGCAGAGGCATATC+TGG 0.336106 7_1:+36591854 Msa1017430:CDS
CCTGATGAGGCAATCGCTTA+TGG 0.336355 7_1:+36592569 Msa1017430:CDS
TGTGTCTCTTCTTACAATTA+AGG 0.339763 7_1:+36592094 Msa1017430:CDS
AACCCAGAAAACACTGTCTT+TGG 0.348697 7_1:+36591312 Msa1017430:CDS
ATAGATGCTGGTGTCATTGC+TGG 0.352626 7_1:+36591945 Msa1017430:CDS
AAATGAAAGTGATGTTCTTC+AGG 0.352646 7_1:+36593234 Msa1017430:CDS
GTTGATGATGTTGTCCTTGT+TGG 0.355323 7_1:+36592467 Msa1017430:CDS
CCATAAGCGATTGCCTCATC+AGG 0.366584 7_1:-36592569 None:intergenic
AAAGATGAAGGATGTGCTAT+TGG 0.373706 7_1:+36591123 Msa1017430:CDS
TAAAGTGCAGCAACTATTGC+AGG 0.380400 7_1:+36592508 Msa1017430:CDS
TGCTGAGGAAATCTCGTCTA+TGG 0.383573 7_1:+36591815 Msa1017430:CDS
TATTGATTTGTCTTCTTGAC+AGG 0.384471 7_1:-36592734 None:intergenic
AGCAATGACACCAGCATCTA+TGG 0.384494 7_1:-36591943 None:intergenic
ATGAAAAGTGAGATTGAGTT+TGG 0.390787 7_1:-36590469 None:intergenic
CGCAGTTCTCAACCTCCTTA+GGG 0.394218 7_1:-36592252 None:intergenic
CTGCGTGCGAGAAGGCAAAA+AGG 0.396025 7_1:+36592270 Msa1017430:CDS
TATGGTTAATACTTGAGGTT+TGG 0.396886 7_1:+36593480 Msa1017430:three_prime_UTR
CTCCTGTCCCTTGTACTTGA+GGG 0.399012 7_1:-36591781 None:intergenic
CTGGTGGAAACACTCACCTT+GGG 0.401415 7_1:+36592141 Msa1017430:CDS
AATGGTTCAAAATGAGATCT+TGG 0.402519 7_1:-36590509 None:intergenic
TCTTCTTACAATTAAGGATA+AGG 0.404002 7_1:+36592100 Msa1017430:CDS
GCTCAAGAGGAACGGTTGAT+TGG 0.410428 7_1:+36591261 Msa1017430:CDS
CGACAACCTTCCTATGTCAT+TGG 0.412744 7_1:-36592984 None:intergenic
TCTCCATGCACTCATTAAAA+AGG 0.412944 7_1:-36592400 None:intergenic
GAATGATTAGTTAATATTTG+TGG 0.422386 7_1:+36593390 Msa1017430:three_prime_UTR
GGATAAGGTCTTCGAAGTTA+AGG 0.423231 7_1:+36592115 Msa1017430:CDS
GGATGGCCACGAGCAGCTGC+AGG 0.428028 7_1:-36592869 None:intergenic
TGGCCATTCAAAGTCATTGC+GGG 0.429564 7_1:+36591735 Msa1017430:CDS
TGCTTTGATGTCGATCAAAA+TGG 0.429626 7_1:+36592902 Msa1017430:CDS
TGTCAATTAAGACACTTGTT+TGG 0.436784 7_1:-36592775 None:intergenic
AATCTCTCGTGCAAAGTTTG+AGG 0.447581 7_1:+36592364 Msa1017430:CDS
GAGGCTTACCGTATCGATGA+TGG 0.448991 7_1:+36593040 Msa1017430:CDS
CACCTCGAATGTTCCAAACT+TGG 0.450052 7_1:+36592625 Msa1017430:CDS
CTTCCTACCAATTAGCCTCT+TGG 0.451481 7_1:-36591676 None:intergenic
AGATGATTGTCACTTGCTCT+TGG 0.452190 7_1:-36592815 None:intergenic
CTATTGCAGGACTTCTTCTA+CGG 0.461154 7_1:+36592521 Msa1017430:CDS
GAGGTCGATGCTTTGTTTCA+GGG 0.461220 7_1:+36592323 Msa1017430:CDS
ACGCCCGCAATGACTTTGAA+TGG 0.462078 7_1:-36591738 None:intergenic
CTTTGTTGCTTTCGCTCAAG+AGG 0.462984 7_1:+36591248 Msa1017430:CDS
TATGAGATAAGGCGTCTTGT+TGG 0.464947 7_1:-36590440 None:intergenic
GATGATGTTGTCCTTGTTGG+TGG 0.468097 7_1:+36592470 Msa1017430:CDS
GAGATTATTCACAATGATCA+AGG 0.469218 7_1:+36591207 Msa1017430:CDS
TTTGTCTTTGACCTTGGTGG+TGG 0.469354 7_1:+36592062 Msa1017430:CDS
ATCAAGCAAATTTGCGGCCA+CGG 0.470005 7_1:-36593197 None:intergenic
ACATCAAAGCATACATCAAA+AGG 0.475211 7_1:-36592890 None:intergenic
GAAGTTAATACATGATGTCT+TGG 0.476092 7_1:+36592682 Msa1017430:CDS
TGAGAATCGTTGAAATAAGC+AGG 0.477964 7_1:-36591909 None:intergenic
TCTTGGGTGTGGTGATTCCT+AGG 0.481383 7_1:+36592699 Msa1017430:CDS
TTCAGAAGAAAACAAGAAGA+TGG 0.482093 7_1:+36593162 Msa1017430:CDS
TCTCCTGTCCCTTGTACTTG+AGG 0.482957 7_1:-36591782 None:intergenic
ACTGCTGCAGCTATTGCATA+TGG 0.483888 7_1:+36591999 Msa1017430:CDS
ATCCACATCAAGCAAATTTG+CGG 0.484545 7_1:-36593203 None:intergenic
GGCTGAAGTCATGAATGCTC+TGG 0.489484 7_1:+36593078 Msa1017430:CDS
TTGTCTTTGACCTTGGTGGT+GGG 0.491381 7_1:+36592063 Msa1017430:CDS
AGAGGACTTTGATAATAGAA+TGG 0.500038 7_1:+36592166 Msa1017430:CDS
GATGTCGCACCACTGTCTCT+TGG 0.500080 7_1:+36592656 Msa1017430:CDS
ACAGGAATTGAAGTGTTCCT+AGG 0.500444 7_1:-36592716 None:intergenic
AAAGTTTGAGGAGATCAATA+TGG 0.505480 7_1:+36592376 Msa1017430:CDS
GTCTTCGAAGTTAAGGCCAC+TGG 0.522470 7_1:+36592122 Msa1017430:CDS
CATTATAGGCAAGTCCTGCT+AGG 0.523311 7_1:+36593291 Msa1017430:CDS
TGTCTTAATTGACATCTATG+AGG 0.526959 7_1:+36592784 Msa1017430:CDS
AAGCTCGTTCTTACTATCAG+TGG 0.530723 7_1:-36592954 None:intergenic
GAGAAATGTGTTGAAGAAGA+AGG 0.531211 7_1:+36593120 Msa1017430:CDS
CACCAAGTTTGGAACATTCG+AGG 0.533491 7_1:-36592627 None:intergenic
TTTGGTGTTGGTATGAGATA+AGG 0.533782 7_1:-36590451 None:intergenic
TTCCCTCAAGTACAAGGGAC+AGG 0.533865 7_1:+36591779 Msa1017430:CDS
GATGATTTCCCTCAAGTACA+AGG 0.534895 7_1:+36591773 Msa1017430:CDS
TCGCACCACTGTCTCTTGGT+TGG 0.536532 7_1:+36592660 Msa1017430:CDS
ACTGGTGGAAACACTCACCT+TGG 0.538678 7_1:+36592140 Msa1017430:CDS
GGCCGCAAATTTGCTTGATG+TGG 0.539872 7_1:+36593201 Msa1017430:CDS
TGATGGGAAATTCTTGAGAA+AGG 0.545073 7_1:+36593057 Msa1017430:CDS
AAGGTGAGTGTTTCCACCAG+TGG 0.547001 7_1:-36592138 None:intergenic
AGTGAGATTGAGTTTGGTGT+TGG 0.548069 7_1:-36590463 None:intergenic
AGAAAAGCCACCATAGATGC+TGG 0.548590 7_1:+36591933 Msa1017430:CDS
TGCTGTTGTCACCAATGTTG+AGG 0.549124 7_1:+36592304 Msa1017430:CDS
TATTAACTAATCATTCATAG+AGG 0.552247 7_1:-36593383 None:intergenic
AGAGGCATATCTGGAATCAC+TGG 0.554460 7_1:+36591863 Msa1017430:CDS
TATGCAATAGCTGCAGCAGT+TGG 0.558562 7_1:-36591996 None:intergenic
TTGCTTTCGCTCAAGAGGAA+CGG 0.559950 7_1:+36591253 Msa1017430:CDS
AAGTTAATACATGATGTCTT+GGG 0.562861 7_1:+36592683 Msa1017430:CDS
AGAATTTCCCATCATCGATA+CGG 0.568365 7_1:-36593048 None:intergenic
TGAGCGAAAGCAACAAAGGA+AGG 0.574959 7_1:-36591243 None:intergenic
GATGGCCACGAGCAGCTGCA+GGG 0.575202 7_1:-36592868 None:intergenic
AGGCTTACCGTATCGATGAT+GGG 0.575473 7_1:+36593041 Msa1017430:CDS
TTCGAAGTTAAGGCCACTGG+TGG 0.576585 7_1:+36592125 Msa1017430:CDS
TATGGTACTCACAAAGATGC+GGG 0.579590 7_1:+36591833 Msa1017430:CDS
CAAAGCATCGACCTCAACAT+TGG 0.580273 7_1:-36592315 None:intergenic
CTCTTGAGCGAAAGCAACAA+AGG 0.582705 7_1:-36591247 None:intergenic
ATGGCCACGAGCAGCTGCAG+GGG 0.583174 7_1:-36592867 None:intergenic
ATCATCGATACGGTAAGCCT+CGG 0.588087 7_1:-36593038 None:intergenic
GTTGAGAACTGCGTGCGAGA+AGG 0.591918 7_1:+36592262 Msa1017430:CDS
TTGGGAACCCAAAAGCCCTA+AGG 0.593146 7_1:+36592237 Msa1017430:CDS
CTTACAATAACCAATGACAT+AGG 0.595828 7_1:+36592974 Msa1017430:CDS
TGTGCTATTGGAATAGACCT+TGG 0.601062 7_1:+36591135 Msa1017430:CDS
TGGTGGAAACACTCACCTTG+GGG 0.601557 7_1:+36592142 Msa1017430:CDS
GTCTTAATTGACATCTATGA+GGG 0.602609 7_1:+36592785 Msa1017430:CDS
TATTGCAGGACTTCTTCTAC+GGG 0.603960 7_1:+36592522 Msa1017430:CDS
CAATAACCAATGACATAGGA+AGG 0.605155 7_1:+36592978 Msa1017430:CDS
ATGCCAAGAGGCTAATTGGT+AGG 0.605854 7_1:+36591673 Msa1017430:CDS
GCAGGACTTCTTCTACGGGA+AGG 0.609093 7_1:+36592526 Msa1017430:CDS
GTGGCCATTCAAAGTCATTG+CGG 0.612672 7_1:+36591734 Msa1017430:CDS
AAGATTGATTGAAGAAGCCG+AGG 0.612741 7_1:+36593021 Msa1017430:CDS
TATTTGAAGACTTACAATGC+AGG 0.614305 7_1:-36593509 None:intergenic
CAAAGCATACATCAAAAGGA+TGG 0.615551 7_1:-36592886 None:intergenic
TGGCCACGAGCAGCTGCAGG+GGG 0.617063 7_1:-36592866 None:intergenic
TAGGAAGTTTACTGATCCTG+TGG 0.621004 7_1:+36591692 Msa1017430:CDS
CAAGAGCATCAACCCTGATG+AGG 0.621114 7_1:+36592556 Msa1017430:CDS
TTGTACTTGAGGGAAATCAT+CGG 0.621700 7_1:-36591771 None:intergenic
TTTCACTCAACAAAGCAGCC+TGG 0.623218 7_1:-36592601 None:intergenic
CATAAGCGATTGCCTCATCA+GGG 0.623921 7_1:-36592568 None:intergenic
GAAAAGAGAACTGACTGTGA+TGG 0.633914 7_1:+36592026 Msa1017430:CDS
CTATGGTACTCACAAAGATG+CGG 0.635011 7_1:+36591832 Msa1017430:CDS
GGAACCCAAAAGCCCTAAGG+AGG 0.640087 7_1:+36592240 Msa1017430:CDS
AATACATGATGTCTTGGGTG+TGG 0.643033 7_1:+36592688 Msa1017430:CDS
CGTACTCTTGTGTTGCTGTG+TGG 0.655627 7_1:+36591163 Msa1017430:CDS
TCCTAGAAGATCCACCAACA+AGG 0.665374 7_1:-36592481 None:intergenic
AATGACACCAGCATCTATGG+TGG 0.667765 7_1:-36591940 None:intergenic
GGTGGAAACACTCACCTTGG+GGG 0.675471 7_1:+36592143 Msa1017430:CDS
AAAGATGCGGGAGATTGCAG+AGG 0.680528 7_1:+36591845 Msa1017430:CDS
CACAAGAGTACGTAGTACCA+AGG 0.684270 7_1:-36591152 None:intergenic
ATGATTTCCCTCAAGTACAA+GGG 0.686901 7_1:+36591774 Msa1017430:CDS
AACTTCCAACCAAGAGACAG+TGG 0.687062 7_1:-36592665 None:intergenic
CATCAAAAGTCCCACCACCA+AGG 0.703356 7_1:-36592073 None:intergenic
GATGGATACTGCAATTACCG+TGG 0.724475 7_1:+36593180 Msa1017430:CDS
GCTGTGTGGCATGAAGAACA+TGG 0.753906 7_1:+36591177 Msa1017430:CDS
AGTGCATGGAGACTGTTGAG+AGG 0.754321 7_1:+36592411 Msa1017430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACGATATAAACAT+AGG - chr7_1:36590584-36590603 None:intergenic 15.0%
!! TTAAAAAGGTTTATTATTTG+TGG + chr7_1:36590759-36590778 Msa1017430:intron 15.0%
!!! TACAAAATTTTATTGTTTCT+AGG + chr7_1:36590907-36590926 Msa1017430:intron 15.0%
!!! TAAAGGTATATAATTAAGAA+AGG + chr7_1:36591381-36591400 Msa1017430:intron 15.0%
!!! AAAAAAATTTAGATCCATTT+TGG + chr7_1:36591475-36591494 Msa1017430:intron 15.0%
!!! CAAAATCTTTAAAACGAAAA+TGG - chr7_1:36590530-36590549 None:intergenic 20.0%
!!! TAACTTTTCGTTTTTTGTTA+TGG + chr7_1:36590945-36590964 Msa1017430:intron 20.0%
!! AATTAAGTGAATAAATGCTT+AGG + chr7_1:36590984-36591003 Msa1017430:intron 20.0%
!! TACATTTGATTATTGAGTAA+AGG + chr7_1:36591364-36591383 Msa1017430:intron 20.0%
!! TTTGATCTATGATATAATGT+TGG + chr7_1:36591432-36591451 Msa1017430:intron 20.0%
!!! TATTTGAGACTTATAAGATT+AGG + chr7_1:36591543-36591562 Msa1017430:intron 20.0%
!! AAAATACATGAAGATCTATT+TGG - chr7_1:36591592-36591611 None:intergenic 20.0%
!!! TAGATCTTCATGTATTTTAT+TGG + chr7_1:36591594-36591613 Msa1017430:intron 20.0%
!! TATTAACTAATCATTCATAG+AGG - chr7_1:36593386-36593405 None:intergenic 20.0%
!!! GAATGATTAGTTAATATTTG+TGG + chr7_1:36593390-36593409 Msa1017430:three_prime_UTR 20.0%
!!! TTTTATATGGTTAATACTTG+AGG + chr7_1:36593475-36593494 Msa1017430:three_prime_UTR 20.0%
! ATTTATGATTCAACACCATT+TGG + chr7_1:36590691-36590710 Msa1017430:intron 25.0%
! GTTTATTATTTGTGGTAGAA+AGG + chr7_1:36590767-36590786 Msa1017430:intron 25.0%
! CATGTTATATACGTTCTTTA+TGG + chr7_1:36590830-36590849 Msa1017430:intron 25.0%
!!! TATGGATTCTATGTTGATTT+TGG + chr7_1:36590848-36590867 Msa1017430:intron 25.0%
!!! CTTAATTTGTCAAACAGATA+AGG - chr7_1:36590971-36590990 None:intergenic 25.0%
!!! ATAAATGCTTAGGTTTTAGA+TGG + chr7_1:36590994-36591013 Msa1017430:intron 25.0%
!!! ATTTTGGTCCATCATTTTTT+GGG + chr7_1:36591491-36591510 Msa1017430:intron 25.0%
! AAAAATGTCCCAAAAAATGA+TGG - chr7_1:36591502-36591521 None:intergenic 25.0%
!! TAAGATTAGGTTCTTACTTT+TGG + chr7_1:36591556-36591575 Msa1017430:intron 25.0%
!!! TATTTTATTGGTGACTGATT+AGG + chr7_1:36591606-36591625 Msa1017430:intron 25.0%
! TACAAAAAGACATAATGTTG+TGG + chr7_1:36591715-36591734 Msa1017430:CDS 25.0%
!!! AATATTTTTGTCTTTGACCT+TGG + chr7_1:36592056-36592075 Msa1017430:CDS 25.0%
! TCTTCTTACAATTAAGGATA+AGG + chr7_1:36592100-36592119 Msa1017430:CDS 25.0%
! GATCAAAAGGAAGAAAAATT+TGG + chr7_1:36592208-36592227 Msa1017430:CDS 25.0%
! AAGAAAAATTTGGACATCAT+TGG + chr7_1:36592218-36592237 Msa1017430:CDS 25.0%
! AGAAAAATTTGGACATCATT+GGG + chr7_1:36592219-36592238 Msa1017430:CDS 25.0%
! AAGTTAATACATGATGTCTT+GGG + chr7_1:36592683-36592702 Msa1017430:CDS 25.0%
!!! TTCTCACTTGATATTTTAAG+TGG + chr7_1:36593322-36593341 Msa1017430:three_prime_UTR 25.0%
!!! TGCTTCTTTAAGGTTTTATA+TGG + chr7_1:36593462-36593481 Msa1017430:three_prime_UTR 25.0%
ATGAAAAGTGAGATTGAGTT+TGG - chr7_1:36590472-36590491 None:intergenic 30.0%
AATGGTTCAAAATGAGATCT+TGG - chr7_1:36590512-36590531 None:intergenic 30.0%
! TCGTTTTCATTGCAAGATTA+TGG + chr7_1:36591095-36591114 Msa1017430:intron 30.0%
ATTATGGCGAAAAAAGATGA+AGG + chr7_1:36591111-36591130 Msa1017430:exon 30.0%
GAGATTATTCACAATGATCA+AGG + chr7_1:36591207-36591226 Msa1017430:CDS 30.0%
!! CAAAAAATGATGGACCAAAA+TGG - chr7_1:36591492-36591511 None:intergenic 30.0%
!! CATTTTGGTCCATCATTTTT+TGG + chr7_1:36591490-36591509 Msa1017430:intron 30.0%
! TTAATTTTACAGATGCCAAG+AGG + chr7_1:36591661-36591680 Msa1017430:intron 30.0%
! ATTATGTCTTTTTGTACCAC+AGG - chr7_1:36591711-36591730 None:intergenic 30.0%
TGTGTCTCTTCTTACAATTA+AGG + chr7_1:36592094-36592113 Msa1017430:CDS 30.0%
! AGAGGACTTTGATAATAGAA+TGG + chr7_1:36592166-36592185 Msa1017430:CDS 30.0%
! AATGGTGAACTATTTTGTAG+AGG + chr7_1:36592184-36592203 Msa1017430:CDS 30.0%
! ATTTTGTAGAGGAGATCAAA+AGG + chr7_1:36592195-36592214 Msa1017430:CDS 30.0%
AAAGTTTGAGGAGATCAATA+TGG + chr7_1:36592376-36592395 Msa1017430:CDS 30.0%
GAAGTTAATACATGATGTCT+TGG + chr7_1:36592682-36592701 Msa1017430:CDS 30.0%
!! TATTGATTTGTCTTCTTGAC+AGG - chr7_1:36592737-36592756 None:intergenic 30.0%
TGTCAATTAAGACACTTGTT+TGG - chr7_1:36592778-36592797 None:intergenic 30.0%
TGTCTTAATTGACATCTATG+AGG + chr7_1:36592784-36592803 Msa1017430:CDS 30.0%
GTCTTAATTGACATCTATGA+GGG + chr7_1:36592785-36592804 Msa1017430:CDS 30.0%
ACATCAAAGCATACATCAAA+AGG - chr7_1:36592893-36592912 None:intergenic 30.0%
!!! TATTTTGACAGTTTCTGCTA+TGG + chr7_1:36592925-36592944 Msa1017430:CDS 30.0%
CTTACAATAACCAATGACAT+AGG + chr7_1:36592974-36592993 Msa1017430:CDS 30.0%
TTCAGAAGAAAACAAGAAGA+TGG + chr7_1:36593162-36593181 Msa1017430:CDS 30.0%
AAATGAAAGTGATGTTCTTC+AGG + chr7_1:36593234-36593253 Msa1017430:CDS 30.0%
TACTGTATTCTGCTTCTTTA+AGG + chr7_1:36593452-36593471 Msa1017430:three_prime_UTR 30.0%
TATGGTTAATACTTGAGGTT+TGG + chr7_1:36593480-36593499 Msa1017430:three_prime_UTR 30.0%
TATTTGAAGACTTACAATGC+AGG - chr7_1:36593512-36593531 None:intergenic 30.0%
!! TTTGGTGTTGGTATGAGATA+AGG - chr7_1:36590454-36590473 None:intergenic 35.0%
! TTTTGCATCACTTTCCAGTA+AGG + chr7_1:36590545-36590564 Msa1017430:intron 35.0%
!!! TTTTTTTTTGTGTGCGTGTG+TGG + chr7_1:36590603-36590622 Msa1017430:intron 35.0%
!!! TCAACACCATTTGGTGTTTT+TGG + chr7_1:36590700-36590719 Msa1017430:intron 35.0%
ACCATTGCTTGAGCTTAAAA+AGG + chr7_1:36590745-36590764 Msa1017430:intron 35.0%
!! ACCTTTTTAAGCTCAAGCAA+TGG - chr7_1:36590749-36590768 None:intergenic 35.0%
ATACCCTTAATGTCATCAAC+AGG - chr7_1:36591043-36591062 None:intergenic 35.0%
TCTTGCAATGAAAACGAACA+AGG - chr7_1:36591092-36591111 None:intergenic 35.0%
AAAGATGAAGGATGTGCTAT+TGG + chr7_1:36591123-36591142 Msa1017430:CDS 35.0%
! TACCAAAGACAGTGTTTTCT+GGG - chr7_1:36591317-36591336 None:intergenic 35.0%
! TTACCAAAGACAGTGTTTTC+TGG - chr7_1:36591318-36591337 None:intergenic 35.0%
TTGTACTTGAGGGAAATCAT+CGG - chr7_1:36591774-36591793 None:intergenic 35.0%
ATGATTTCCCTCAAGTACAA+GGG + chr7_1:36591774-36591793 Msa1017430:CDS 35.0%
TGAGAATCGTTGAAATAAGC+AGG - chr7_1:36591912-36591931 None:intergenic 35.0%
! ATTTTTGTCTTTGACCTTGG+TGG + chr7_1:36592059-36592078 Msa1017430:CDS 35.0%
TCTCCATGCACTCATTAAAA+AGG - chr7_1:36592403-36592422 None:intergenic 35.0%
! GTGTTTTACTGATGCTAAGA+TGG + chr7_1:36592433-36592452 Msa1017430:CDS 35.0%
CAAAGCATACATCAAAAGGA+TGG - chr7_1:36592889-36592908 None:intergenic 35.0%
TGCTTTGATGTCGATCAAAA+TGG + chr7_1:36592902-36592921 Msa1017430:CDS 35.0%
CAATAACCAATGACATAGGA+AGG + chr7_1:36592978-36592997 Msa1017430:CDS 35.0%
AGAATTTCCCATCATCGATA+CGG - chr7_1:36593051-36593070 None:intergenic 35.0%
TGATGGGAAATTCTTGAGAA+AGG + chr7_1:36593057-36593076 Msa1017430:CDS 35.0%
GAGAAATGTGTTGAAGAAGA+AGG + chr7_1:36593120-36593139 Msa1017430:CDS 35.0%
ATCCACATCAAGCAAATTTG+CGG - chr7_1:36593206-36593225 None:intergenic 35.0%
AGTATGTATGAGCGCATTAT+AGG + chr7_1:36593277-36593296 Msa1017430:CDS 35.0%
TGAGAACATAAAAACCTAGC+AGG - chr7_1:36593308-36593327 None:intergenic 35.0%
! TATGAGATAAGGCGTCTTGT+TGG - chr7_1:36590443-36590462 None:intergenic 40.0%
!! AGTGAGATTGAGTTTGGTGT+TGG - chr7_1:36590466-36590485 None:intergenic 40.0%
GAATGTTGACAGAACCTTAC+TGG - chr7_1:36590562-36590581 None:intergenic 40.0%
TGCAAGCCAAAAACACCAAA+TGG - chr7_1:36590709-36590728 None:intergenic 40.0%
!! TCGTCCTGTTGATGACATTA+AGG + chr7_1:36591036-36591055 Msa1017430:intron 40.0%
!! CGTCCTGTTGATGACATTAA+GGG + chr7_1:36591037-36591056 Msa1017430:intron 40.0%
! TGTGCTATTGGAATAGACCT+TGG + chr7_1:36591135-36591154 Msa1017430:CDS 40.0%
AACCCAGAAAACACTGTCTT+TGG + chr7_1:36591312-36591331 Msa1017430:CDS 40.0%
TAGGAAGTTTACTGATCCTG+TGG + chr7_1:36591692-36591711 Msa1017430:CDS 40.0%
GATGATTTCCCTCAAGTACA+AGG + chr7_1:36591773-36591792 Msa1017430:CDS 40.0%
CTATGGTACTCACAAAGATG+CGG + chr7_1:36591832-36591851 Msa1017430:CDS 40.0%
TATGGTACTCACAAAGATGC+GGG + chr7_1:36591833-36591852 Msa1017430:CDS 40.0%
!! TGCTGGTCTCAATGTTTTGA+AGG + chr7_1:36591962-36591981 Msa1017430:CDS 40.0%
! CACAGTCAGTTCTCTTTTCA+AGG - chr7_1:36592025-36592044 None:intergenic 40.0%
GAAAAGAGAACTGACTGTGA+TGG + chr7_1:36592026-36592045 Msa1017430:CDS 40.0%
GGATAAGGTCTTCGAAGTTA+AGG + chr7_1:36592115-36592134 Msa1017430:CDS 40.0%
AATCTCTCGTGCAAAGTTTG+AGG + chr7_1:36592364-36592383 Msa1017430:CDS 40.0%
! GGACCTTTTTAATGAGTGCA+TGG + chr7_1:36592397-36592416 Msa1017430:CDS 40.0%
!! GTTGATGATGTTGTCCTTGT+TGG + chr7_1:36592467-36592486 Msa1017430:CDS 40.0%
TGCAATAGTTGCTGCACTTT+AGG - chr7_1:36592509-36592528 None:intergenic 40.0%
TAAAGTGCAGCAACTATTGC+AGG + chr7_1:36592508-36592527 Msa1017430:CDS 40.0%
CTATTGCAGGACTTCTTCTA+CGG + chr7_1:36592521-36592540 Msa1017430:CDS 40.0%
TATTGCAGGACTTCTTCTAC+GGG + chr7_1:36592522-36592541 Msa1017430:CDS 40.0%
ACATCGATCAACACCAAGTT+TGG - chr7_1:36592641-36592660 None:intergenic 40.0%
AATACATGATGTCTTGGGTG+TGG + chr7_1:36592688-36592707 Msa1017430:CDS 40.0%
! ACAGGAATTGAAGTGTTCCT+AGG - chr7_1:36592719-36592738 None:intergenic 40.0%
! AGATGATTGTCACTTGCTCT+TGG - chr7_1:36592818-36592837 None:intergenic 40.0%
GCAAGTGACAATCATCTTCT+TGG + chr7_1:36592821-36592840 Msa1017430:CDS 40.0%
! CTTGGTTCTTTCACTCTTTC+TGG + chr7_1:36592839-36592858 Msa1017430:CDS 40.0%
AAGCTCGTTCTTACTATCAG+TGG - chr7_1:36592957-36592976 None:intergenic 40.0%
AAGATTGATTGAAGAAGCCG+AGG + chr7_1:36593021-36593040 Msa1017430:CDS 40.0%
! CACAAGAGTACGTAGTACCA+AGG - chr7_1:36591155-36591174 None:intergenic 45.0%
TGAGCGAAAGCAACAAAGGA+AGG - chr7_1:36591246-36591265 None:intergenic 45.0%
CTCTTGAGCGAAAGCAACAA+AGG - chr7_1:36591250-36591269 None:intergenic 45.0%
!! CTTTGTTGCTTTCGCTCAAG+AGG + chr7_1:36591248-36591267 Msa1017430:CDS 45.0%
TTGCTTTCGCTCAAGAGGAA+CGG + chr7_1:36591253-36591272 Msa1017430:CDS 45.0%
ACAGATGCCAAGAGGCTAAT+TGG + chr7_1:36591669-36591688 Msa1017430:intron 45.0%
ATGCCAAGAGGCTAATTGGT+AGG + chr7_1:36591673-36591692 Msa1017430:CDS 45.0%
! CTTCCTACCAATTAGCCTCT+TGG - chr7_1:36591679-36591698 None:intergenic 45.0%
GTGGCCATTCAAAGTCATTG+CGG + chr7_1:36591734-36591753 Msa1017430:CDS 45.0%
TGGCCATTCAAAGTCATTGC+GGG + chr7_1:36591735-36591754 Msa1017430:CDS 45.0%
TGCTGAGGAAATCTCGTCTA+TGG + chr7_1:36591815-36591834 Msa1017430:CDS 45.0%
! AGAGGCATATCTGGAATCAC+TGG + chr7_1:36591863-36591882 Msa1017430:CDS 45.0%
AGAAAAGCCACCATAGATGC+TGG + chr7_1:36591933-36591952 Msa1017430:CDS 45.0%
AATGACACCAGCATCTATGG+TGG - chr7_1:36591943-36591962 None:intergenic 45.0%
AGCAATGACACCAGCATCTA+TGG - chr7_1:36591946-36591965 None:intergenic 45.0%
!! ATAGATGCTGGTGTCATTGC+TGG + chr7_1:36591945-36591964 Msa1017430:CDS 45.0%
TATGCAATAGCTGCAGCAGT+TGG - chr7_1:36591999-36592018 None:intergenic 45.0%
ACTGCTGCAGCTATTGCATA+TGG + chr7_1:36591999-36592018 Msa1017430:CDS 45.0%
TTTGTCTTTGACCTTGGTGG+TGG + chr7_1:36592062-36592081 Msa1017430:CDS 45.0%
! TTGTCTTTGACCTTGGTGGT+GGG + chr7_1:36592063-36592082 Msa1017430:CDS 45.0%
! TCAACCTCCTTAGGGCTTTT+GGG - chr7_1:36592247-36592266 None:intergenic 45.0%
TGCTGTTGTCACCAATGTTG+AGG + chr7_1:36592304-36592323 Msa1017430:CDS 45.0%
!! CAAAGCATCGACCTCAACAT+TGG - chr7_1:36592318-36592337 None:intergenic 45.0%
!! TGAGGTCGATGCTTTGTTTC+AGG + chr7_1:36592322-36592341 Msa1017430:CDS 45.0%
!! GAGGTCGATGCTTTGTTTCA+GGG + chr7_1:36592323-36592342 Msa1017430:CDS 45.0%
GATGATGTTGTCCTTGTTGG+TGG + chr7_1:36592470-36592489 Msa1017430:CDS 45.0%
! TCCTTGTTGGTGGATCTTCT+AGG + chr7_1:36592480-36592499 Msa1017430:CDS 45.0%
TCCTAGAAGATCCACCAACA+AGG - chr7_1:36592484-36592503 None:intergenic 45.0%
CATAAGCGATTGCCTCATCA+GGG - chr7_1:36592571-36592590 None:intergenic 45.0%
TTTCACTCAACAAAGCAGCC+TGG - chr7_1:36592604-36592623 None:intergenic 45.0%
CACCTCGAATGTTCCAAACT+TGG + chr7_1:36592625-36592644 Msa1017430:CDS 45.0%
! CACCAAGTTTGGAACATTCG+AGG - chr7_1:36592630-36592649 None:intergenic 45.0%
AACTTCCAACCAAGAGACAG+TGG - chr7_1:36592668-36592687 None:intergenic 45.0%
CGACAACCTTCCTATGTCAT+TGG - chr7_1:36592987-36593006 None:intergenic 45.0%
ATCATCGATACGGTAAGCCT+CGG - chr7_1:36593041-36593060 None:intergenic 45.0%
! AGGCTTACCGTATCGATGAT+GGG + chr7_1:36593041-36593060 Msa1017430:CDS 45.0%
GATGGATACTGCAATTACCG+TGG + chr7_1:36593180-36593199 Msa1017430:CDS 45.0%
ATCAAGCAAATTTGCGGCCA+CGG - chr7_1:36593200-36593219 None:intergenic 45.0%
CATTATAGGCAAGTCCTGCT+AGG + chr7_1:36593291-36593310 Msa1017430:CDS 45.0%
! CGTACTCTTGTGTTGCTGTG+TGG + chr7_1:36591163-36591182 Msa1017430:CDS 50.0%
GCTGTGTGGCATGAAGAACA+TGG + chr7_1:36591177-36591196 Msa1017430:CDS 50.0%
GCTCAAGAGGAACGGTTGAT+TGG + chr7_1:36591261-36591280 Msa1017430:CDS 50.0%
ACGCCCGCAATGACTTTGAA+TGG - chr7_1:36591741-36591760 None:intergenic 50.0%
TTCCCTCAAGTACAAGGGAC+AGG + chr7_1:36591779-36591798 Msa1017430:CDS 50.0%
CTCCTGTCCCTTGTACTTGA+GGG - chr7_1:36591784-36591803 None:intergenic 50.0%
TCTCCTGTCCCTTGTACTTG+AGG - chr7_1:36591785-36591804 None:intergenic 50.0%
! GGAGAAGCTCTTTTGTGCTG+AGG + chr7_1:36591800-36591819 Msa1017430:CDS 50.0%
AAAGATGCGGGAGATTGCAG+AGG + chr7_1:36591845-36591864 Msa1017430:CDS 50.0%
! GGAGATTGCAGAGGCATATC+TGG + chr7_1:36591854-36591873 Msa1017430:CDS 50.0%
CATCAAAAGTCCCACCACCA+AGG - chr7_1:36592076-36592095 None:intergenic 50.0%
GTCTTCGAAGTTAAGGCCAC+TGG + chr7_1:36592122-36592141 Msa1017430:CDS 50.0%
TTCGAAGTTAAGGCCACTGG+TGG + chr7_1:36592125-36592144 Msa1017430:CDS 50.0%
AAGGTGAGTGTTTCCACCAG+TGG - chr7_1:36592141-36592160 None:intergenic 50.0%
ACTGGTGGAAACACTCACCT+TGG + chr7_1:36592140-36592159 Msa1017430:CDS 50.0%
CTGGTGGAAACACTCACCTT+GGG + chr7_1:36592141-36592160 Msa1017430:CDS 50.0%
TGGTGGAAACACTCACCTTG+GGG + chr7_1:36592142-36592161 Msa1017430:CDS 50.0%
TATCAAAGTCCTCTCCCCCA+AGG - chr7_1:36592160-36592179 None:intergenic 50.0%
TTGGGAACCCAAAAGCCCTA+AGG + chr7_1:36592237-36592256 Msa1017430:CDS 50.0%
! CTCAACCTCCTTAGGGCTTT+TGG - chr7_1:36592248-36592267 None:intergenic 50.0%
CGCAGTTCTCAACCTCCTTA+GGG - chr7_1:36592255-36592274 None:intergenic 50.0%
ACGCAGTTCTCAACCTCCTT+AGG - chr7_1:36592256-36592275 None:intergenic 50.0%
AGTGCATGGAGACTGTTGAG+AGG + chr7_1:36592411-36592430 Msa1017430:CDS 50.0%
!! CAAGAGCATCAACCCTGATG+AGG + chr7_1:36592556-36592575 Msa1017430:CDS 50.0%
CCATAAGCGATTGCCTCATC+AGG - chr7_1:36592572-36592591 None:intergenic 50.0%
CCTGATGAGGCAATCGCTTA+TGG + chr7_1:36592569-36592588 Msa1017430:CDS 50.0%
TCTTGGGTGTGGTGATTCCT+AGG + chr7_1:36592699-36592718 Msa1017430:CDS 50.0%
! GAGGCTTACCGTATCGATGA+TGG + chr7_1:36593040-36593059 Msa1017430:CDS 50.0%
GGCTGAAGTCATGAATGCTC+TGG + chr7_1:36593078-36593097 Msa1017430:CDS 50.0%
! GGCCGCAAATTTGCTTGATG+TGG + chr7_1:36593201-36593220 Msa1017430:CDS 50.0%
GGTGGAAACACTCACCTTGG+GGG + chr7_1:36592143-36592162 Msa1017430:CDS 55.0%
AAACACTCACCTTGGGGGAG+AGG + chr7_1:36592148-36592167 Msa1017430:CDS 55.0%
GGAACCCAAAAGCCCTAAGG+AGG + chr7_1:36592240-36592259 Msa1017430:CDS 55.0%
GTTGAGAACTGCGTGCGAGA+AGG + chr7_1:36592262-36592281 Msa1017430:CDS 55.0%
CTGCGTGCGAGAAGGCAAAA+AGG + chr7_1:36592270-36592289 Msa1017430:CDS 55.0%
GCAGGACTTCTTCTACGGGA+AGG + chr7_1:36592526-36592545 Msa1017430:CDS 55.0%
GATGTCGCACCACTGTCTCT+TGG + chr7_1:36592656-36592675 Msa1017430:CDS 55.0%
TCGCACCACTGTCTCTTGGT+TGG + chr7_1:36592660-36592679 Msa1017430:CDS 55.0%
CGCTTATGGCGCAGCTGTCC+AGG + chr7_1:36592583-36592602 Msa1017430:CDS 65.0%
TTACCCCCTGCAGCTGCTCG+TGG + chr7_1:36592863-36592882 Msa1017430:CDS 65.0%
ATGGCCACGAGCAGCTGCAG+GGG - chr7_1:36592870-36592889 None:intergenic 65.0%
GATGGCCACGAGCAGCTGCA+GGG - chr7_1:36592871-36592890 None:intergenic 65.0%
TGGCCACGAGCAGCTGCAGG+GGG - chr7_1:36592869-36592888 None:intergenic 70.0%
GGATGGCCACGAGCAGCTGC+AGG - chr7_1:36592872-36592891 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 36590425 36593580 36590425 ID=Msa1017430;Name=Msa1017430
chr7_1 mRNA 36590425 36593580 36590425 ID=Msa1017430-mRNA-1;Parent=Msa1017430;Name=Msa1017430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=140|1|1|1|0.5|0.33|3|268|619
chr7_1 exon 36590425 36590561 36590425 ID=Msa1017430-mRNA-1:exon:6919;Parent=Msa1017430-mRNA-1
chr7_1 exon 36591111 36591333 36591111 ID=Msa1017430-mRNA-1:exon:6920;Parent=Msa1017430-mRNA-1
chr7_1 exon 36591673 36593580 36591673 ID=Msa1017430-mRNA-1:exon:6921;Parent=Msa1017430-mRNA-1
chr7_1 five_prime_UTR 36590425 36590561 36590425 ID=Msa1017430-mRNA-1:five_prime_utr;Parent=Msa1017430-mRNA-1
chr7_1 five_prime_UTR 36591111 36591113 36591111 ID=Msa1017430-mRNA-1:five_prime_utr;Parent=Msa1017430-mRNA-1
chr7_1 CDS 36591114 36591333 36591114 ID=Msa1017430-mRNA-1:cds;Parent=Msa1017430-mRNA-1
chr7_1 CDS 36591673 36593312 36591673 ID=Msa1017430-mRNA-1:cds;Parent=Msa1017430-mRNA-1
chr7_1 three_prime_UTR 36593313 36593580 36593313 ID=Msa1017430-mRNA-1:three_prime_utr;Parent=Msa1017430-mRNA-1
Gene Sequence

>Msa1017430

ATGGCGAAAAAAGATGAAGGATGTGCTATTGGAATAGACCTTGGTACTACGTACTCTTGTGTTGCTGTGTGGCATGAAGAACATGGTAGAGTTGAGATTATTCACAATGATCAAGGTAACAAAACTACTCCTTCCTTTGTTGCTTTCGCTCAAGAGGAACGGTTGATTGGTAATGCTGCTAAGAATCAAGCTGCTACAAACCCAGAAAACACTGTCTTTGATGCCAAGAGGCTAATTGGTAGGAAGTTTACTGATCCTGTGGTACAAAAAGACATAATGTTGTGGCCATTCAAAGTCATTGCGGGCGTGAATGACAAACCGATGATTTCCCTCAAGTACAAGGGACAGGAGAAGCTCTTTTGTGCTGAGGAAATCTCGTCTATGGTACTCACAAAGATGCGGGAGATTGCAGAGGCATATCTGGAATCACTGGTTAAGAATGCTGTCATTACTGTGCCTGCTTATTTCAACGATTCTCAAAGAAAAGCCACCATAGATGCTGGTGTCATTGCTGGTCTCAATGTTTTGAAGGTAATCAATGAACCAACTGCTGCAGCTATTGCATATGGCCTTGAAAAGAGAACTGACTGTGATGGTAAACAGAATATTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTGTCTCTTCTTACAATTAAGGATAAGGTCTTCGAAGTTAAGGCCACTGGTGGAAACACTCACCTTGGGGGAGAGGACTTTGATAATAGAATGGTGAACTATTTTGTAGAGGAGATCAAAAGGAAGAAAAATTTGGACATCATTGGGAACCCAAAAGCCCTAAGGAGGTTGAGAACTGCGTGCGAGAAGGCAAAAAGGACATTATCTTTTGCTGTTGTCACCAATGTTGAGGTCGATGCTTTGTTTCAGGGTGTTGATTTTTCTTCATCAATCTCTCGTGCAAAGTTTGAGGAGATCAATATGGACCTTTTTAATGAGTGCATGGAGACTGTTGAGAGGTGTTTTACTGATGCTAAGATGGACAAGAATAGTGTTGATGATGTTGTCCTTGTTGGTGGATCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGACTTCTTCTACGGGAAGGAATTATGCAAGAGCATCAACCCTGATGAGGCAATCGCTTATGGCGCAGCTGTCCAGGCTGCTTTGTTGAGTGAAAGCACCTCGAATGTTCCAAACTTGGTGTTGATCGATGTCGCACCACTGTCTCTTGGTTGGAAGTTAATACATGATGTCTTGGGTGTGGTGATTCCTAGGAACACTTCAATTCCTGTCAAGAAGACAAATCAATATATTACAGTTATAGATAACCAAACAAGTGTCTTAATTGACATCTATGAGGGTGAGAGACCAAGAGCAAGTGACAATCATCTTCTTGGTTCTTTCACTCTTTCTGGCTTACCCCCTGCAGCTGCTCGTGGCCATCCTTTTGATGTATGCTTTGATGTCGATCAAAATGGTATTTTGACAGTTTCTGCTATGGACAAATCCACTGATAGTAAGAACGAGCTTACAATAACCAATGACATAGGAAGGTTGTCGACTGAAGAAATCAAAAGATTGATTGAAGAAGCCGAGGCTTACCGTATCGATGATGGGAAATTCTTGAGAAAGGCTGAAGTCATGAATGCTCTGGATCACTGTATTTACAAAATGAGAAATGTGTTGAAGAAGAAGGATATTAATCTAAAGCTCTCTTCAGAAGAAAACAAGAAGATGGATACTGCAATTACCGTGGCCGCAAATTTGCTTGATGTGGATGATCGTCAAAATGAAAGTGATGTTCTTCAGGATCACTTGAATGAGCTTGAGAGTATGTATGAGCGCATTATAGGCAAGTCCTGCTAG
Protein sequence

>Msa1017430

MAKKDEGCAIGIDLGTTYSCVAVWHEEHGRVEIIHNDQGNKTTPSFVAFAQEERLIGNAAKNQAATNPENTVFDAKRLIGRKFTDPVVQKDIMLWPFKVIAGVNDKPMISLKYKGQEKLFCAEEISSMVLTKMREIAEAYLESLVKNAVITVPAYFNDSQRKATIDAGVIAGLNVLKVINEPTAAAIAYGLEKRTDCDGKQNIFVFDLGGGTFDVSLLTIKDKVFEVKATGGNTHLGGEDFDNRMVNYFVEEIKRKKNLDIIGNPKALRRLRTACEKAKRTLSFAVVTNVEVDALFQGVDFSSSISRAKFEEINMDLFNECMETVERCFTDAKMDKNSVDDVVLVGGSSRIPKVQQLLQDFFYGKELCKSINPDEAIAYGAAVQAALLSESTSNVPNLVLIDVAPLSLGWKLIHDVLGVVIPRNTSIPVKKTNQYITVIDNQTSVLIDIYEGERPRASDNHLLGSFTLSGLPPAAARGHPFDVCFDVDQNGILTVSAMDKSTDSKNELTITNDIGRLSTEEIKRLIEEAEAYRIDDGKFLRKAEVMNALDHCIYKMRNVLKKKDINLKLSSEENKKMDTAITVAANLLDVDDRQNESDVLQDHLNELESMYERIIGKSC*