Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024310 | XP_003623274.1 | 84.615 | 117 | 8 | 2 | 1 | 113 | 1 | 111 | 3.54e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024310 | G7KRF0 | 84.615 | 117 | 8 | 2 | 1 | 113 | 1 | 111 | 1.69e-61 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1024310 | 0.805041 | 1.616365e-49 | -8.615850e-47 |
| Msa0027860 | Msa1024310 | 0.820944 | 5.248366e-53 | -8.615850e-47 |
| Msa0604280 | Msa1024310 | 0.810854 | 9.370211e-51 | -8.615850e-47 |
| Msa0631700 | Msa1024310 | 0.809287 | 2.038339e-50 | -8.615850e-47 |
| Msa0634290 | Msa1024310 | 0.824008 | 1.018771e-53 | -8.615850e-47 |
| Msa0659230 | Msa1024310 | 0.810837 | 9.449550e-51 | -8.615850e-47 |
| Msa0670360 | Msa1024310 | 0.800911 | 1.154216e-48 | -8.615850e-47 |
| Msa0680460 | Msa1024310 | 0.800716 | 1.264970e-48 | -8.615850e-47 |
| Msa0711240 | Msa1024310 | 0.804261 | 2.351302e-49 | -8.615850e-47 |
| Msa0711250 | Msa1024310 | 0.805063 | 1.599175e-49 | -8.615850e-47 |
| Msa0168010 | Msa1024310 | 0.811438 | 7.001309e-51 | -8.615850e-47 |
| Msa0195190 | Msa1024310 | 0.805805 | 1.117966e-49 | -8.615850e-47 |
| Msa0366510 | Msa1024310 | 0.807344 | 5.291069e-50 | -8.615850e-47 |
| Msa0414480 | Msa1024310 | 0.819019 | 1.446757e-52 | -8.615850e-47 |
| Msa0418160 | Msa1024310 | 0.817585 | 3.055535e-52 | -8.615850e-47 |
| Msa0444400 | Msa1024310 | 0.815668 | 8.217356e-52 | -8.615850e-47 |
| Msa0464310 | Msa1024310 | 0.836955 | 6.908743e-57 | -8.615850e-47 |
| Msa0991010 | Msa1024310 | 0.805841 | 1.098586e-49 | -8.615850e-47 |
| Msa0996980 | Msa1024310 | 0.805849 | 1.094518e-49 | -8.615850e-47 |
| Msa0996990 | Msa1024310 | 0.815268 | 1.008771e-51 | -8.615850e-47 |
| Msa1024310 | Msa1041910 | 0.803513 | 3.362674e-49 | -8.615850e-47 |
| Msa1024310 | Msa1048390 | 0.804476 | 2.120978e-49 | -8.615850e-47 |
| Msa1024310 | Msa1064940 | 0.841090 | 5.868316e-58 | -8.615850e-47 |
| Msa1024310 | Msa1107220 | 0.812263 | 4.628691e-51 | -8.615850e-47 |
| Msa1024310 | Msa1107320 | 0.802506 | 5.431821e-49 | -8.615850e-47 |
| Msa1024310 | Msa1108370 | 0.957516 | 2.248777e-115 | -8.615850e-47 |
| Msa1024310 | Msa1150760 | 0.801908 | 7.212404e-49 | -8.615850e-47 |
| Msa1024310 | Msa1153690 | 0.802118 | 6.528819e-49 | -8.615850e-47 |
| Msa1024310 | Msa1167960 | 0.804760 | 1.850488e-49 | -8.615850e-47 |
| Msa1024310 | Msa1355340 | 0.822094 | 2.847153e-53 | -8.615850e-47 |
| Msa0240580 | Msa1024310 | 0.808802 | 2.589703e-50 | -8.615850e-47 |
| Msa0245660 | Msa1024310 | 0.803231 | 3.847174e-49 | -8.615850e-47 |
| Msa0278960 | Msa1024310 | 0.814295 | 1.657206e-51 | -8.615850e-47 |
| Msa0303900 | Msa1024310 | 0.801008 | 1.102646e-48 | -8.615850e-47 |
| Msa0323090 | Msa1024310 | 0.808880 | 2.491838e-50 | -8.615850e-47 |
| Msa0491830 | Msa1024310 | 0.813459 | 2.531924e-51 | -8.615850e-47 |
| Msa0515130 | Msa1024310 | 0.813078 | 3.070127e-51 | -8.615850e-47 |
| Msa0535570 | Msa1024310 | 0.811956 | 5.400041e-51 | -8.615850e-47 |
| Msa0538440 | Msa1024310 | 0.826285 | 2.949440e-54 | -8.615850e-47 |
| Msa0538530 | Msa1024310 | 0.826769 | 2.262420e-54 | -8.615850e-47 |
| Msa0540640 | Msa1024310 | 0.809072 | 2.266516e-50 | -8.615850e-47 |
| Msa0554660 | Msa1024310 | 0.812385 | 4.354834e-51 | -8.615850e-47 |
| Msa0589740 | Msa1024310 | 0.803342 | 3.649282e-49 | -8.615850e-47 |
| Msa0594330 | Msa1024310 | 0.809732 | 1.635944e-50 | -8.615850e-47 |
| Msa0893220 | Msa1024310 | 0.808213 | 3.459464e-50 | -8.615850e-47 |
| Msa0896920 | Msa1024310 | 0.836133 | 1.118622e-56 | -8.615850e-47 |
| Msa0932900 | Msa1024310 | 0.808700 | 2.723332e-50 | -8.615850e-47 |
| Msa0932930 | Msa1024310 | 0.813739 | 2.197095e-51 | -8.615850e-47 |
| Msa0964510 | Msa1024310 | 0.811801 | 5.836589e-51 | -8.615850e-47 |
| Msa0970790 | Msa1024310 | 0.821140 | 4.729735e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024310 | MtrunA17_Chr7g0242141 | 84.615 | 117 | 8 | 2 | 1 | 113 | 1 | 111 | 3.25e-65 | 193 |
| Msa1024310 | MtrunA17_Chr7g0242081 | 51.961 | 102 | 43 | 3 | 30 | 126 | 27 | 127 | 4.27e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGAATCGTCAGCAATTC+GGG | 0.244167 | 7_1:+53384885 | Msa1024310:CDS |
| ACCCGAATTGCTGACGATTC+AGG | 0.254329 | 7_1:-53384886 | None:intergenic |
| TAAGAGGGGATTCTCTTATA+AGG | 0.293421 | 7_1:+53383545 | Msa1024310:CDS |
| GGAGATCGCGGTTTCTTGAT+TGG | 0.347991 | 7_1:-53383667 | None:intergenic |
| ACCCTGAATCGTCAGCAATT+CGG | 0.349585 | 7_1:+53384884 | Msa1024310:CDS |
| CCCGAATTGCTGACGATTCA+GGG | 0.374699 | 7_1:-53384885 | None:intergenic |
| ATAACTTGGAAAGCAATTTC+AGG | 0.384541 | 7_1:-53385038 | None:intergenic |
| CGCGGTTTCTTGATTGGAGG+GGG | 0.395599 | 7_1:-53383661 | None:intergenic |
| GGAGAACTCCTTCGCAAACT+TGG | 0.406549 | 7_1:+53385015 | Msa1024310:CDS |
| GTCAGCAATTCGGGTAAGTC+TGG | 0.408786 | 7_1:+53384894 | Msa1024310:CDS |
| TAGATATCAGTTTCATAACT+TGG | 0.426133 | 7_1:-53385052 | None:intergenic |
| AAGAGGGGATTCTCTTATAA+GGG | 0.477382 | 7_1:+53383546 | Msa1024310:CDS |
| ATCTCCGATCTTACAAATCA+AGG | 0.478783 | 7_1:+53383684 | Msa1024310:CDS |
| TAAGGGAAATAGTTATCCTT+CGG | 0.485583 | 7_1:+53383563 | Msa1024310:CDS |
| TCTTCCATCGCGTTGTCTGT+TGG | 0.511505 | 7_1:-53384958 | None:intergenic |
| ATCGCGGTTTCTTGATTGGA+GGG | 0.519025 | 7_1:-53383663 | None:intergenic |
| TGATCCTTGATTTGTAAGAT+CGG | 0.527760 | 7_1:-53383688 | None:intergenic |
| TACAATGAATTGCACAAACA+CGG | 0.528310 | 7_1:+53383615 | Msa1024310:CDS |
| GGTAAGTCTGGAGGTGAACA+AGG | 0.534232 | 7_1:+53384906 | Msa1024310:CDS |
| GATCGCGGTTTCTTGATTGG+AGG | 0.552553 | 7_1:-53383664 | None:intergenic |
| GCAGCTGTGTTGGTTTCTCA+AGG | 0.564887 | 7_1:+53384994 | Msa1024310:CDS |
| TGCACACACCGCAGCTGTGT+TGG | 0.571415 | 7_1:+53384984 | Msa1024310:CDS |
| GGGTGAAAGCGATCATAAGA+GGG | 0.583008 | 7_1:+53383530 | Msa1024310:CDS |
| TGGGTGAAAGCGATCATAAG+AGG | 0.584348 | 7_1:+53383529 | Msa1024310:CDS |
| ACAATGAATTGCACAAACAC+GGG | 0.606791 | 7_1:+53383616 | Msa1024310:CDS |
| ATTTGTAAGATCGGAGATCG+CGG | 0.611829 | 7_1:-53383679 | None:intergenic |
| TCGCGGTTTCTTGATTGGAG+GGG | 0.613086 | 7_1:-53383662 | None:intergenic |
| TATCCTTCGGATGATGAGCA+TGG | 0.617244 | 7_1:+53383576 | Msa1024310:CDS |
| ATTTCAGGCCAAGTTTGCGA+AGG | 0.621581 | 7_1:-53385023 | None:intergenic |
| ACTCCATGCTCATCATCCGA+AGG | 0.646422 | 7_1:-53383579 | None:intergenic |
| GCGGTTTCTTGATTGGAGGG+GGG | 0.647692 | 7_1:-53383660 | None:intergenic |
| TTGAGAAACCAACACAGCTG+CGG | 0.651919 | 7_1:-53384992 | None:intergenic |
| TGTTCCAACAGACAACGCGA+TGG | 0.657088 | 7_1:+53384954 | Msa1024310:CDS |
| AGCAATTCGGGTAAGTCTGG+AGG | 0.657891 | 7_1:+53384897 | Msa1024310:CDS |
| GTAAGTCTGGAGGTGAACAA+GGG | 0.696458 | 7_1:+53384907 | Msa1024310:CDS |
| GGTGAAAGCGATCATAAGAG+GGG | 0.710139 | 7_1:+53383531 | Msa1024310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTAATAAAAAT+TGG | + | chr7_1:53384246-53384265 | Msa1024310:intron | 0.0% |
| !!! | ATTAAATTAATAATATTTTA+AGG | - | chr7_1:53384319-53384338 | None:intergenic | 0.0% |
| !!! | TTATTTTTTTTAATAAAAAT+TGG | + | chr7_1:53384246-53384265 | Msa1024310:intron | 0.0% |
| !!! | ATTAAATTAATAATATTTTA+AGG | - | chr7_1:53384319-53384338 | None:intergenic | 0.0% |
| !! | AAAAATTGATATATTTAGAT+GGG | - | chr7_1:53384153-53384172 | None:intergenic | 10.0% |
| !! | TAAAAATTGATATATTTAGA+TGG | - | chr7_1:53384154-53384173 | None:intergenic | 10.0% |
| !! | GATAAATTAATAAAGATTAA+AGG | + | chr7_1:53384377-53384396 | Msa1024310:intron | 10.0% |
| !!! | TAAAAATTTCATTCAAATTT+TGG | - | chr7_1:53384578-53384597 | None:intergenic | 10.0% |
| !!! | AAAAATAGATAAAATGTTTT+AGG | - | chr7_1:53384654-53384673 | None:intergenic | 10.0% |
| !! | AAAAATTGATATATTTAGAT+GGG | - | chr7_1:53384153-53384172 | None:intergenic | 10.0% |
| !! | TAAAAATTGATATATTTAGA+TGG | - | chr7_1:53384154-53384173 | None:intergenic | 10.0% |
| !! | GATAAATTAATAAAGATTAA+AGG | + | chr7_1:53384377-53384396 | Msa1024310:intron | 10.0% |
| !!! | TAAAAATTTCATTCAAATTT+TGG | - | chr7_1:53384578-53384597 | None:intergenic | 10.0% |
| !!! | AAAAATAGATAAAATGTTTT+AGG | - | chr7_1:53384654-53384673 | None:intergenic | 10.0% |
| !!! | ACTATAAATTTGTTTCTTTA+AGG | + | chr7_1:53384012-53384031 | Msa1024310:intron | 15.0% |
| !! | AACTCTATTTATTATTTGTT+GGG | + | chr7_1:53384111-53384130 | Msa1024310:intron | 15.0% |
| !!! | CTAAATAATTCTTTGTATTT+TGG | + | chr7_1:53384186-53384205 | Msa1024310:intron | 15.0% |
| !!! | TAATCTTTAATTTGAAGTTA+TGG | + | chr7_1:53384355-53384374 | Msa1024310:intron | 15.0% |
| !! | AAAAGAACAAACATAAAAAT+TGG | + | chr7_1:53384532-53384551 | Msa1024310:intron | 15.0% |
| !! | AAAGTAAAATAAATAGTATG+AGG | + | chr7_1:53384679-53384698 | Msa1024310:intron | 15.0% |
| !!! | ACTATAAATTTGTTTCTTTA+AGG | + | chr7_1:53384012-53384031 | Msa1024310:intron | 15.0% |
| !! | AACTCTATTTATTATTTGTT+GGG | + | chr7_1:53384111-53384130 | Msa1024310:intron | 15.0% |
| !!! | CTAAATAATTCTTTGTATTT+TGG | + | chr7_1:53384186-53384205 | Msa1024310:intron | 15.0% |
| !!! | TAATCTTTAATTTGAAGTTA+TGG | + | chr7_1:53384355-53384374 | Msa1024310:intron | 15.0% |
| !! | AAAAGAACAAACATAAAAAT+TGG | + | chr7_1:53384532-53384551 | Msa1024310:intron | 15.0% |
| !! | AAAGTAAAATAAATAGTATG+AGG | + | chr7_1:53384679-53384698 | Msa1024310:intron | 15.0% |
| !! | TTCATAGATGTCAAAATTAA+AGG | - | chr7_1:53383746-53383765 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGGAAATGAA+TGG | - | chr7_1:53383801-53383820 | None:intergenic | 20.0% |
| !!! | ATTTCCATCTTTAATTTCAA+TGG | + | chr7_1:53383804-53383823 | Msa1024310:intron | 20.0% |
| !! | TAATCCATTGAAATTAAAGA+TGG | - | chr7_1:53383811-53383830 | None:intergenic | 20.0% |
| !!! | GCGACAAATATTTTTTTTAA+GGG | - | chr7_1:53383872-53383891 | None:intergenic | 20.0% |
| !!! | AGCGACAAATATTTTTTTTA+AGG | - | chr7_1:53383873-53383892 | None:intergenic | 20.0% |
| !! | CAACTCTATTTATTATTTGT+TGG | + | chr7_1:53384110-53384129 | Msa1024310:intron | 20.0% |
| !!! | ATTTTGGTCCTATAAATTTT+CGG | + | chr7_1:53384202-53384221 | Msa1024310:intron | 20.0% |
| !! | ATTAGTAACCGAAAATTTAT+AGG | - | chr7_1:53384213-53384232 | None:intergenic | 20.0% |
| !! | ATATCAGAAAATAAGTCATT+TGG | + | chr7_1:53384487-53384506 | Msa1024310:intron | 20.0% |
| !! | CAAACATAAAAATTGGTAAA+AGG | + | chr7_1:53384539-53384558 | Msa1024310:intron | 20.0% |
| !! | TTCATAGATGTCAAAATTAA+AGG | - | chr7_1:53383746-53383765 | None:intergenic | 20.0% |
| !! | AAATTAAAGATGGAAATGAA+TGG | - | chr7_1:53383801-53383820 | None:intergenic | 20.0% |
| !!! | ATTTCCATCTTTAATTTCAA+TGG | + | chr7_1:53383804-53383823 | Msa1024310:intron | 20.0% |
| !! | TAATCCATTGAAATTAAAGA+TGG | - | chr7_1:53383811-53383830 | None:intergenic | 20.0% |
| !!! | GCGACAAATATTTTTTTTAA+GGG | - | chr7_1:53383872-53383891 | None:intergenic | 20.0% |
| !!! | AGCGACAAATATTTTTTTTA+AGG | - | chr7_1:53383873-53383892 | None:intergenic | 20.0% |
| !! | CAACTCTATTTATTATTTGT+TGG | + | chr7_1:53384110-53384129 | Msa1024310:intron | 20.0% |
| !!! | ATTTTGGTCCTATAAATTTT+CGG | + | chr7_1:53384202-53384221 | Msa1024310:intron | 20.0% |
| !! | ATTAGTAACCGAAAATTTAT+AGG | - | chr7_1:53384213-53384232 | None:intergenic | 20.0% |
| !! | ATATCAGAAAATAAGTCATT+TGG | + | chr7_1:53384487-53384506 | Msa1024310:intron | 20.0% |
| !! | CAAACATAAAAATTGGTAAA+AGG | + | chr7_1:53384539-53384558 | Msa1024310:intron | 20.0% |
| ! | ATCAATAATAACAAGTGAGT+TGG | + | chr7_1:53383707-53383726 | Msa1024310:intron | 25.0% |
| !!! | TTTTAAGGGATCTATGTTAA+AGG | - | chr7_1:53383858-53383877 | None:intergenic | 25.0% |
| !! | ATTATTTGTTGGGTTAACTA+TGG | + | chr7_1:53384121-53384140 | Msa1024310:intron | 25.0% |
| ! | ATCAATAATAACAAGTGAGT+TGG | + | chr7_1:53383707-53383726 | Msa1024310:intron | 25.0% |
| !!! | TTTTAAGGGATCTATGTTAA+AGG | - | chr7_1:53383858-53383877 | None:intergenic | 25.0% |
| !! | ATTATTTGTTGGGTTAACTA+TGG | + | chr7_1:53384121-53384140 | Msa1024310:intron | 25.0% |
| TAAGGGAAATAGTTATCCTT+CGG | + | chr7_1:53383563-53383582 | Msa1024310:CDS | 30.0% | |
| TACAATGAATTGCACAAACA+CGG | + | chr7_1:53383615-53383634 | Msa1024310:CDS | 30.0% | |
| !! | TGATCCTTGATTTGTAAGAT+CGG | - | chr7_1:53383691-53383710 | None:intergenic | 30.0% |
| CATGCAGAAAGTTGAAAATA+GGG | - | chr7_1:53383944-53383963 | None:intergenic | 30.0% | |
| TCATGCAGAAAGTTGAAAAT+AGG | - | chr7_1:53383945-53383964 | None:intergenic | 30.0% | |
| !! | TTCTTTAAGGTGTATAAGAG+AGG | + | chr7_1:53384025-53384044 | Msa1024310:intron | 30.0% |
| !! | TCTTTAAGGTGTATAAGAGA+GGG | + | chr7_1:53384026-53384045 | Msa1024310:intron | 30.0% |
| ATAACTTGGAAAGCAATTTC+AGG | - | chr7_1:53385041-53385060 | None:intergenic | 30.0% | |
| TAAGGGAAATAGTTATCCTT+CGG | + | chr7_1:53383563-53383582 | Msa1024310:CDS | 30.0% | |
| TACAATGAATTGCACAAACA+CGG | + | chr7_1:53383615-53383634 | Msa1024310:CDS | 30.0% | |
| !! | TGATCCTTGATTTGTAAGAT+CGG | - | chr7_1:53383691-53383710 | None:intergenic | 30.0% |
| CATGCAGAAAGTTGAAAATA+GGG | - | chr7_1:53383944-53383963 | None:intergenic | 30.0% | |
| TCATGCAGAAAGTTGAAAAT+AGG | - | chr7_1:53383945-53383964 | None:intergenic | 30.0% | |
| !! | TTCTTTAAGGTGTATAAGAG+AGG | + | chr7_1:53384025-53384044 | Msa1024310:intron | 30.0% |
| !! | TCTTTAAGGTGTATAAGAGA+GGG | + | chr7_1:53384026-53384045 | Msa1024310:intron | 30.0% |
| ATAACTTGGAAAGCAATTTC+AGG | - | chr7_1:53385041-53385060 | None:intergenic | 30.0% | |
| TAAGAGGGGATTCTCTTATA+AGG | + | chr7_1:53383545-53383564 | Msa1024310:CDS | 35.0% | |
| AAGAGGGGATTCTCTTATAA+GGG | + | chr7_1:53383546-53383565 | Msa1024310:CDS | 35.0% | |
| ACAATGAATTGCACAAACAC+GGG | + | chr7_1:53383616-53383635 | Msa1024310:CDS | 35.0% | |
| ATCTCCGATCTTACAAATCA+AGG | + | chr7_1:53383684-53383703 | Msa1024310:CDS | 35.0% | |
| TTTCAACTTTCTGCATGAGT+CGG | + | chr7_1:53383947-53383966 | Msa1024310:intron | 35.0% | |
| TTTAGTCAGTGAGCTTAACT+CGG | - | chr7_1:53384085-53384104 | None:intergenic | 35.0% | |
| TAAGAGGGGATTCTCTTATA+AGG | + | chr7_1:53383545-53383564 | Msa1024310:CDS | 35.0% | |
| AAGAGGGGATTCTCTTATAA+GGG | + | chr7_1:53383546-53383565 | Msa1024310:CDS | 35.0% | |
| ACAATGAATTGCACAAACAC+GGG | + | chr7_1:53383616-53383635 | Msa1024310:CDS | 35.0% | |
| ATCTCCGATCTTACAAATCA+AGG | + | chr7_1:53383684-53383703 | Msa1024310:CDS | 35.0% | |
| TTTCAACTTTCTGCATGAGT+CGG | + | chr7_1:53383947-53383966 | Msa1024310:intron | 35.0% | |
| TTTAGTCAGTGAGCTTAACT+CGG | - | chr7_1:53384085-53384104 | None:intergenic | 35.0% | |
| ATTTGTAAGATCGGAGATCG+CGG | - | chr7_1:53383682-53383701 | None:intergenic | 40.0% | |
| ATTTGTAAGATCGGAGATCG+CGG | - | chr7_1:53383682-53383701 | None:intergenic | 40.0% | |
| TGGGTGAAAGCGATCATAAG+AGG | + | chr7_1:53383529-53383548 | Msa1024310:CDS | 45.0% | |
| GGGTGAAAGCGATCATAAGA+GGG | + | chr7_1:53383530-53383549 | Msa1024310:CDS | 45.0% | |
| GGTGAAAGCGATCATAAGAG+GGG | + | chr7_1:53383531-53383550 | Msa1024310:CDS | 45.0% | |
| TATCCTTCGGATGATGAGCA+TGG | + | chr7_1:53383576-53383595 | Msa1024310:CDS | 45.0% | |
| ATCGCGGTTTCTTGATTGGA+GGG | - | chr7_1:53383666-53383685 | None:intergenic | 45.0% | |
| ! | TCGGTTGGTATGCATGAGTT+GGG | - | chr7_1:53384066-53384085 | None:intergenic | 45.0% |
| ACCCTGAATCGTCAGCAATT+CGG | + | chr7_1:53384884-53384903 | Msa1024310:CDS | 45.0% | |
| GTAAGTCTGGAGGTGAACAA+GGG | + | chr7_1:53384907-53384926 | Msa1024310:CDS | 45.0% | |
| TTGAGAAACCAACACAGCTG+CGG | - | chr7_1:53384995-53385014 | None:intergenic | 45.0% | |
| ATTTCAGGCCAAGTTTGCGA+AGG | - | chr7_1:53385026-53385045 | None:intergenic | 45.0% | |
| TGGGTGAAAGCGATCATAAG+AGG | + | chr7_1:53383529-53383548 | Msa1024310:CDS | 45.0% | |
| GGGTGAAAGCGATCATAAGA+GGG | + | chr7_1:53383530-53383549 | Msa1024310:CDS | 45.0% | |
| GGTGAAAGCGATCATAAGAG+GGG | + | chr7_1:53383531-53383550 | Msa1024310:CDS | 45.0% | |
| TATCCTTCGGATGATGAGCA+TGG | + | chr7_1:53383576-53383595 | Msa1024310:CDS | 45.0% | |
| ATCGCGGTTTCTTGATTGGA+GGG | - | chr7_1:53383666-53383685 | None:intergenic | 45.0% | |
| ! | TCGGTTGGTATGCATGAGTT+GGG | - | chr7_1:53384066-53384085 | None:intergenic | 45.0% |
| ACCCTGAATCGTCAGCAATT+CGG | + | chr7_1:53384884-53384903 | Msa1024310:CDS | 45.0% | |
| GTAAGTCTGGAGGTGAACAA+GGG | + | chr7_1:53384907-53384926 | Msa1024310:CDS | 45.0% | |
| TTGAGAAACCAACACAGCTG+CGG | - | chr7_1:53384995-53385014 | None:intergenic | 45.0% | |
| ATTTCAGGCCAAGTTTGCGA+AGG | - | chr7_1:53385026-53385045 | None:intergenic | 45.0% | |
| ACTCCATGCTCATCATCCGA+AGG | - | chr7_1:53383582-53383601 | None:intergenic | 50.0% | |
| TTGATTGGAGGGGGGAGAAT+TGG | - | chr7_1:53383655-53383674 | None:intergenic | 50.0% | |
| TCGCGGTTTCTTGATTGGAG+GGG | - | chr7_1:53383665-53383684 | None:intergenic | 50.0% | |
| GATCGCGGTTTCTTGATTGG+AGG | - | chr7_1:53383667-53383686 | None:intergenic | 50.0% | |
| GGAGATCGCGGTTTCTTGAT+TGG | - | chr7_1:53383670-53383689 | None:intergenic | 50.0% | |
| ! | CGGTTGGTATGCATGAGTTG+GGG | - | chr7_1:53384065-53384084 | None:intergenic | 50.0% |
| ! | CTCGGTTGGTATGCATGAGT+TGG | - | chr7_1:53384067-53384086 | None:intergenic | 50.0% |
| GTCAGTGAGCTTAACTCGGT+TGG | - | chr7_1:53384081-53384100 | None:intergenic | 50.0% | |
| CCCGAATTGCTGACGATTCA+GGG | - | chr7_1:53384888-53384907 | None:intergenic | 50.0% | |
| CCCTGAATCGTCAGCAATTC+GGG | + | chr7_1:53384885-53384904 | Msa1024310:CDS | 50.0% | |
| ACCCGAATTGCTGACGATTC+AGG | - | chr7_1:53384889-53384908 | None:intergenic | 50.0% | |
| GTCAGCAATTCGGGTAAGTC+TGG | + | chr7_1:53384894-53384913 | Msa1024310:CDS | 50.0% | |
| AGCAATTCGGGTAAGTCTGG+AGG | + | chr7_1:53384897-53384916 | Msa1024310:CDS | 50.0% | |
| GGTAAGTCTGGAGGTGAACA+AGG | + | chr7_1:53384906-53384925 | Msa1024310:CDS | 50.0% | |
| TGTTCCAACAGACAACGCGA+TGG | + | chr7_1:53384954-53384973 | Msa1024310:CDS | 50.0% | |
| TCTTCCATCGCGTTGTCTGT+TGG | - | chr7_1:53384961-53384980 | None:intergenic | 50.0% | |
| !! | GCAGCTGTGTTGGTTTCTCA+AGG | + | chr7_1:53384994-53385013 | Msa1024310:CDS | 50.0% |
| GGAGAACTCCTTCGCAAACT+TGG | + | chr7_1:53385015-53385034 | Msa1024310:CDS | 50.0% | |
| ACTCCATGCTCATCATCCGA+AGG | - | chr7_1:53383582-53383601 | None:intergenic | 50.0% | |
| TTGATTGGAGGGGGGAGAAT+TGG | - | chr7_1:53383655-53383674 | None:intergenic | 50.0% | |
| TCGCGGTTTCTTGATTGGAG+GGG | - | chr7_1:53383665-53383684 | None:intergenic | 50.0% | |
| GATCGCGGTTTCTTGATTGG+AGG | - | chr7_1:53383667-53383686 | None:intergenic | 50.0% | |
| GGAGATCGCGGTTTCTTGAT+TGG | - | chr7_1:53383670-53383689 | None:intergenic | 50.0% | |
| ! | CGGTTGGTATGCATGAGTTG+GGG | - | chr7_1:53384065-53384084 | None:intergenic | 50.0% |
| ! | CTCGGTTGGTATGCATGAGT+TGG | - | chr7_1:53384067-53384086 | None:intergenic | 50.0% |
| GTCAGTGAGCTTAACTCGGT+TGG | - | chr7_1:53384081-53384100 | None:intergenic | 50.0% | |
| CCCGAATTGCTGACGATTCA+GGG | - | chr7_1:53384888-53384907 | None:intergenic | 50.0% | |
| CCCTGAATCGTCAGCAATTC+GGG | + | chr7_1:53384885-53384904 | Msa1024310:CDS | 50.0% | |
| ACCCGAATTGCTGACGATTC+AGG | - | chr7_1:53384889-53384908 | None:intergenic | 50.0% | |
| GTCAGCAATTCGGGTAAGTC+TGG | + | chr7_1:53384894-53384913 | Msa1024310:CDS | 50.0% | |
| AGCAATTCGGGTAAGTCTGG+AGG | + | chr7_1:53384897-53384916 | Msa1024310:CDS | 50.0% | |
| GGTAAGTCTGGAGGTGAACA+AGG | + | chr7_1:53384906-53384925 | Msa1024310:CDS | 50.0% | |
| TGTTCCAACAGACAACGCGA+TGG | + | chr7_1:53384954-53384973 | Msa1024310:CDS | 50.0% | |
| TCTTCCATCGCGTTGTCTGT+TGG | - | chr7_1:53384961-53384980 | None:intergenic | 50.0% | |
| !! | GCAGCTGTGTTGGTTTCTCA+AGG | + | chr7_1:53384994-53385013 | Msa1024310:CDS | 50.0% |
| GGAGAACTCCTTCGCAAACT+TGG | + | chr7_1:53385015-53385034 | Msa1024310:CDS | 50.0% | |
| GAGGGGGGAGAATTGGATTC+TGG | - | chr7_1:53383648-53383667 | None:intergenic | 55.0% | |
| GCGGTTTCTTGATTGGAGGG+GGG | - | chr7_1:53383663-53383682 | None:intergenic | 55.0% | |
| CGCGGTTTCTTGATTGGAGG+GGG | - | chr7_1:53383664-53383683 | None:intergenic | 55.0% | |
| GAGGGGGGAGAATTGGATTC+TGG | - | chr7_1:53383648-53383667 | None:intergenic | 55.0% | |
| GCGGTTTCTTGATTGGAGGG+GGG | - | chr7_1:53383663-53383682 | None:intergenic | 55.0% | |
| CGCGGTTTCTTGATTGGAGG+GGG | - | chr7_1:53383664-53383683 | None:intergenic | 55.0% | |
| TGCACACACCGCAGCTGTGT+TGG | + | chr7_1:53384984-53385003 | Msa1024310:CDS | 60.0% | |
| TGCACACACCGCAGCTGTGT+TGG | + | chr7_1:53384984-53385003 | Msa1024310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 53383528 | 53385062 | 53383528 | ID=Msa1024310;Name=Msa1024310 |
| chr7_1 | mRNA | 53383528 | 53385062 | 53383528 | ID=Msa1024310-mRNA-1;Parent=Msa1024310;Name=Msa1024310-mRNA-1;_AED=0.03;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|126 |
| chr7_1 | exon | 53383528 | 53383720 | 53383528 | ID=Msa1024310-mRNA-1:exon:10557;Parent=Msa1024310-mRNA-1 |
| chr7_1 | exon | 53384875 | 53385062 | 53384875 | ID=Msa1024310-mRNA-1:exon:10558;Parent=Msa1024310-mRNA-1 |
| chr7_1 | CDS | 53383528 | 53383720 | 53383528 | ID=Msa1024310-mRNA-1:cds;Parent=Msa1024310-mRNA-1 |
| chr7_1 | CDS | 53384875 | 53385062 | 53384875 | ID=Msa1024310-mRNA-1:cds;Parent=Msa1024310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
