AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240580 MtrunA17_Chr2g0292091 96.221 344 13 0 1 344 1 344 0.0 677
Msa0240580 MtrunA17_Chr2g0292101 84.348 345 53 1 1 344 1 345 0.0 593
Msa0240580 MtrunA17_Chr2g0292111 68.437 339 102 1 1 334 1 339 1.80e-168 473
Msa0240580 MtrunA17_Chr2g0292241 66.377 345 109 2 1 338 1 345 1.31e-166 468
Msa0240580 MtrunA17_Chr2g0292181 66.377 345 109 2 1 338 10 354 5.22e-165 464
Msa0240580 MtrunA17_Chr2g0292211 66.857 350 109 2 1 343 12 361 1.34e-164 463
Msa0240580 MtrunA17_Chr2g0292251 71.613 310 88 0 22 331 26 335 2.06e-162 457
Msa0240580 MtrunA17_Chr2g0292151 65.179 336 112 1 1 331 1 336 9.28e-160 451
Msa0240580 MtrunA17_Chr2g0291751 66.055 327 111 0 9 335 14 340 6.41e-158 446
Msa0240580 MtrunA17_Chr2g0292271 64.589 353 113 3 4 344 1 353 3.25e-157 444
Msa0240580 MtrunA17_Chr2g0292261 63.068 352 122 2 1 344 1 352 1.63e-154 437
Msa0240580 MtrunA17_Chr2g0292291 63.557 343 117 3 10 344 11 353 5.46e-154 436
Msa0240580 MtrunA17_Chr7g0258811 57.595 316 133 1 12 326 57 372 3.83e-124 361
Msa0240580 MtrunA17_Chr1g0175561 53.823 327 150 1 1 326 1 327 2.58e-122 355
Msa0240580 MtrunA17_Chr5g0404721 50.993 302 147 1 24 325 30 330 1.05e-107 318
Msa0240580 MtrunA17_Chr4g0070951 52.769 307 141 2 22 326 26 330 1.10e-107 318
Msa0240580 MtrunA17_Chr8g0372601 49.669 302 151 1 24 325 30 330 8.88e-105 310
Msa0240580 MtrunA17_Chr5g0402571 51.148 305 145 3 22 325 25 326 2.03e-102 304
Msa0240580 MtrunA17_Chr5g0402581 49.843 319 155 4 9 325 11 326 1.22e-101 302
Msa0240580 MtrunA17_Chr2g0299691 48.860 307 152 2 23 326 55 359 4.56e-99 297
Msa0240580 MtrunA17_Chr3g0129051 50.662 302 138 4 22 321 26 318 1.57e-97 291
Msa0240580 MtrunA17_Chr1g0155611 48.013 302 157 0 24 325 46 347 2.13e-97 292
Msa0240580 MtrunA17_Chr4g0013201 47.869 305 150 2 21 325 43 338 1.01e-96 290
Msa0240580 MtrunA17_Chr5g0432441 45.872 327 164 5 3 325 9 326 1.24e-96 289
Msa0240580 MtrunA17_Chr4g0013191 48.534 307 146 4 22 325 43 340 7.70e-96 288
Msa0240580 MtrunA17_Chr5g0432351 47.302 315 155 5 14 325 15 321 9.99e-96 287
Msa0240580 MtrunA17_Chr5g0432341 47.302 315 155 5 14 325 15 321 1.72e-95 286
Msa0240580 MtrunA17_Chr4g0068621 46.689 302 158 2 24 325 38 336 3.78e-95 286
Msa0240580 MtrunA17_Chr2g0320071 45.342 322 167 2 4 325 5 317 4.84e-95 285
Msa0240580 MtrunA17_Chr2g0320101 48.525 305 146 3 22 325 23 317 3.90e-94 283
Msa0240580 MtrunA17_Chr5g0438021 46.440 323 160 5 7 325 12 325 9.89e-94 282
Msa0240580 MtrunA17_Chr7g0244461 47.039 304 152 2 22 325 18 312 1.44e-93 281
Msa0240580 MtrunA17_Chr3g0106921 46.372 317 158 5 12 325 13 320 1.90e-93 281
Msa0240580 MtrunA17_Chr5g0400331 46.452 310 162 2 20 325 22 331 3.08e-93 281
Msa0240580 MtrunA17_Chr4g0013171 46.708 319 157 5 10 325 13 321 4.11e-93 280
Msa0240580 MtrunA17_Chr2g0320091 46.885 305 152 3 22 325 23 318 4.49e-93 280
Msa0240580 MtrunA17_Chr3g0114451 46.205 303 154 2 23 325 25 318 6.57e-93 280
Msa0240580 MtrunA17_Chr5g0432331 46.984 315 156 5 14 325 46 352 8.73e-93 280
Msa0240580 MtrunA17_Chr4g0043391 49.511 307 145 4 22 325 25 324 2.39e-92 278
Msa0240580 MtrunA17_Chr3g0129061 47.095 327 158 5 1 321 1 318 2.12e-91 276
Msa0240580 MtrunA17_Chr2g0320051 44.785 326 171 3 1 325 1 318 3.21e-91 275
Msa0240580 MtrunA17_Chr4g0038171 48.534 307 148 3 22 325 22 321 3.53e-91 275
Msa0240580 MtrunA17_Chr7g0244451 46.711 304 153 2 22 325 22 316 5.02e-91 275
Msa0240580 MtrunA17_Chr2g0320061 44.479 326 172 3 1 325 1 318 2.19e-90 273
Msa0240580 MtrunA17_Chr2g0292281 60.435 230 79 3 117 344 18 237 2.35e-90 270
Msa0240580 MtrunA17_Chr4g0013181 48.333 300 144 4 28 325 63 353 4.82e-90 273
Msa0240580 MtrunA17_Chr4g0038161 45.732 328 167 3 1 325 1 320 1.80e-89 271
Msa0240580 MtrunA17_Chr3g0129041 47.468 316 155 4 12 325 16 322 3.84e-89 270
Msa0240580 MtrunA17_Chr4g0038151 46.906 307 152 3 22 325 23 321 5.94e-89 270
Msa0240580 MtrunA17_Chr5g0421411 46.996 283 141 4 49 325 6 285 3.25e-88 266
Msa0240580 MtrunA17_Chr1g0213061 43.354 316 167 5 13 326 17 322 1.28e-86 264
Msa0240580 MtrunA17_Chr7g0224371 43.692 325 164 6 6 326 14 323 7.38e-86 262
Msa0240580 MtrunA17_Chr2g0320031 44.079 304 162 3 22 325 24 319 3.35e-85 260
Msa0240580 MtrunA17_Chr3g0106901 43.810 315 167 3 11 325 19 323 1.77e-84 258
Msa0240580 MtrunA17_Chr3g0107881 44.625 307 160 3 22 325 25 324 8.50e-84 256
Msa0240580 MtrunA17_Chr4g0024121 41.896 327 185 5 1 325 3 326 1.83e-83 256
Msa0240580 MtrunA17_Chr4g0076211 43.960 298 156 6 29 325 46 333 2.02e-82 253
Msa0240580 MtrunA17_Chr2g0279041 45.033 302 155 5 28 325 31 325 2.42e-81 250
Msa0240580 MtrunA17_Chr4g0013721 42.763 304 169 3 22 325 98 396 5.41e-81 252
Msa0240580 MtrunA17_Chr2g0322861 41.796 323 181 6 5 325 69 386 7.05e-81 251
Msa0240580 MtrunA17_Chr4g0013821 42.763 304 167 4 24 326 28 325 6.14e-80 247
Msa0240580 MtrunA17_Chr4g0063671 43.366 309 163 6 22 325 19 320 9.80e-80 246
Msa0240580 MtrunA17_Chr5g0405991 42.574 303 164 7 24 325 23 316 2.64e-79 245
Msa0240580 MtrunA17_Chr6g0467161 41.846 325 169 7 10 325 23 336 9.48e-79 244
Msa0240580 MtrunA17_Chr1g0204011 39.077 325 192 4 1 325 4 322 1.10e-78 243
Msa0240580 MtrunA17_Chr2g0296621 43.092 304 161 6 24 326 50 342 4.79e-78 243
Msa0240580 MtrunA17_Chr1g0194151 40.303 330 186 4 5 325 6 333 3.95e-77 240
Msa0240580 MtrunA17_Chr3g0128061 40.065 307 181 2 21 326 23 327 1.07e-76 238
Msa0240580 MtrunA17_Chr1g0188431 41.391 302 164 5 24 325 39 327 5.48e-76 236
Msa0240580 MtrunA17_Chr1g0164891 41.914 303 168 5 28 325 93 392 1.19e-75 238
Msa0240580 MtrunA17_Chr7g0268501 41.250 320 181 5 6 325 8 320 1.20e-75 236
Msa0240580 MtrunA17_Chr7g0268521 41.250 320 181 5 6 325 8 320 1.20e-75 236
Msa0240580 MtrunA17_Chr1g0194271 40.476 336 182 5 6 325 7 340 1.38e-75 236
Msa0240580 MtrunA17_Chr8g0371381 41.584 303 167 7 24 325 26 319 2.42e-75 234
Msa0240580 MtrunA17_Chr1g0157051 41.254 303 169 6 24 325 24 318 4.55e-75 234
Msa0240580 MtrunA17_Chr6g0467121 42.073 328 165 8 10 326 51 364 5.55e-73 231
Msa0240580 MtrunA17_Chr7g0254201 39.869 306 175 5 20 325 16 312 1.32e-72 228
Msa0240580 MtrunA17_Chr5g0432401 41.830 306 128 5 22 324 27 285 1.50e-72 226
Msa0240580 MtrunA17_Chr6g0477071 38.750 320 182 6 6 325 37 342 4.91e-72 227
Msa0240580 MtrunA17_Chr5g0401431 38.182 330 196 5 1 324 1 328 2.60e-70 222
Msa0240580 MtrunA17_Chr7g0225221 40.122 329 181 7 4 325 1 320 3.96e-70 221
Msa0240580 MtrunA17_Chr6g0460711 40.683 322 183 5 4 325 1 314 1.14e-69 220
Msa0240580 MtrunA17_Chr6g0467251 42.333 300 160 6 24 321 36 324 4.69e-69 219
Msa0240580 MtrunA17_Chr4g0075241 39.016 305 179 4 23 325 28 327 4.73e-69 219
Msa0240580 MtrunA17_Chr2g0278671 42.122 311 164 9 22 325 22 323 5.75e-69 218
Msa0240580 MtrunA17_Chr1g0148021 39.458 332 190 7 1 325 1 328 2.43e-68 217
Msa0240580 MtrunA17_Chr1g0197411 38.111 307 185 4 22 325 26 330 1.02e-67 216
Msa0240580 MtrunA17_Chr2g0279061 45.802 262 131 5 68 325 12 266 3.64e-67 212
Msa0240580 MtrunA17_Chr4g0046131 38.361 305 181 5 23 322 41 343 1.08e-66 213
Msa0240580 MtrunA17_Chr4g0072091 39.073 302 176 4 23 321 23 319 1.24e-63 205
Msa0240580 MtrunA17_Chr4g0053871 37.879 330 192 5 1 324 1 323 1.39e-63 204
Msa0240580 MtrunA17_Chr7g0254231 37.377 305 179 5 22 326 20 312 1.65e-62 201
Msa0240580 MtrunA17_Chr8g0364291 34.906 318 203 3 10 325 9 324 3.49e-62 201
Msa0240580 MtrunA17_Chr3g0136751 39.934 303 172 4 22 321 23 318 3.84e-62 201
Msa0240580 MtrunA17_Chr2g0329641 37.338 308 181 5 23 325 35 335 6.00e-61 198
Msa0240580 MtrunA17_Chr5g0413051 36.774 310 187 6 22 325 71 377 2.16e-59 195
Msa0240580 MtrunA17_Chr6g0451571 37.013 308 185 7 22 325 32 334 4.25e-58 191
Msa0240580 MtrunA17_Chr2g0316791 34.535 333 183 7 22 322 74 403 4.90e-56 187
Msa0240580 MtrunA17_Chr2g0316481 35.135 333 181 7 22 322 74 403 1.29e-55 186
Msa0240580 MtrunA17_Chr1g0181511 33.762 311 195 4 20 327 23 325 1.32e-54 181
Msa0240580 MtrunA17_Chr2g0316831 34.835 333 182 7 22 322 110 439 2.35e-54 184
Msa0240580 MtrunA17_Chr1g0181431 34.084 311 194 4 20 327 23 325 8.74e-54 179
Msa0240580 MtrunA17_Chr2g0316191 34.132 334 184 7 22 322 74 404 2.36e-53 181
Msa0240580 MtrunA17_Chr1g0181481 34.405 311 193 4 20 327 23 325 1.04e-52 176
Msa0240580 MtrunA17_Chr2g0311251 34.030 335 185 8 22 324 9 339 4.57e-52 175
Msa0240580 MtrunA17_Chr2g0311241 30.319 376 185 7 22 324 58 429 2.14e-48 168
Msa0240580 MtrunA17_Chr3g0114461 43.455 191 100 2 135 325 10 192 5.47e-48 160
Msa0240580 MtrunA17_Chr4g0074851 32.558 301 192 4 28 325 36 328 3.28e-44 154
Msa0240580 MtrunA17_Chr4g0004591 29.595 321 164 3 24 324 77 355 1.35e-42 151
Msa0240580 MtrunA17_Chr2g0316811 35.537 242 138 4 22 246 48 288 8.82e-39 140
Msa0240580 MtrunA17_Chr3g0114491 50.459 109 54 0 20 128 14 122 2.35e-32 117
Msa0240580 MtrunA17_Chr2g0316141 31.119 286 143 9 70 322 11 275 1.43e-31 120
Msa0240580 MtrunA17_Chr2g0316181 31.119 286 143 9 70 322 11 275 1.43e-31 120
Msa0240580 MtrunA17_Chr5g0432321 45.161 124 60 2 145 268 17 132 6.90e-26 100
Msa0240580 MtrunA17_Chr1g0181501 31.633 196 123 4 135 327 4 191 6.75e-24 97.1
Msa0240580 MtrunA17_Chr3g0104101 35.862 145 84 4 188 326 9 150 1.22e-20 87.0
Msa0240580 MtrunA17_Chr6g0468731 53.521 71 29 2 63 133 22 88 4.76e-18 78.2
Msa0240580 MtrunA17_Chr7g0254181 38.095 105 61 2 86 190 22 122 5.79e-18 80.1
Msa0240580 MtrunA17_Chr2g0316771 28.729 181 97 3 174 324 7 185 9.02e-18 80.1
Msa0240580 MtrunA17_Chr1g0181491 40.187 107 62 2 22 128 10 114 2.35e-17 78.2
Msa0240580 MtrunA17_Chr5g0432361 40.206 97 57 1 228 324 13 108 1.30e-16 74.7
Msa0240580 MtrunA17_Chr1g0196191 57.143 63 26 1 66 128 27 88 1.55e-15 73.2
Msa0240580 MtrunA17_Chr4g0013811 42.466 73 42 0 135 207 6 78 1.35e-13 65.5
Msa0240580 MtrunA17_Chr7g0254171 36.842 76 47 1 67 142 1 75 5.94e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240580 AT5G06720.1 57.321 321 137 0 6 326 14 334 1.27e-131 379
Msa0240580 AT5G06730.1 56.231 329 144 0 6 334 15 343 1.65e-131 380
Msa0240580 AT2G38380.1 55.828 326 141 2 3 325 8 333 5.98e-129 373
Msa0240580 AT4G08770.1 55.949 311 135 2 21 329 21 331 4.07e-126 365
Msa0240580 AT3G32980.1 57.321 321 133 3 12 328 17 337 1.17e-125 365
Msa0240580 AT3G49120.1 56.386 321 136 3 12 328 18 338 1.42e-125 364
Msa0240580 AT2G38390.1 54.601 326 145 2 3 325 8 333 3.27e-123 358
Msa0240580 AT3G49110.1 55.864 324 138 3 7 328 19 339 2.34e-122 356
Msa0240580 AT4G08780.1 54.341 311 140 2 21 329 21 331 4.42e-122 355
Msa0240580 AT2G18140.1 50.993 302 147 1 24 325 35 335 2.44e-106 315
Msa0240580 AT5G19890.1 50.765 327 152 5 1 325 8 327 2.17e-105 312
Msa0240580 AT2G18150.1 50.000 300 149 1 26 325 38 336 4.46e-105 311
Msa0240580 AT4G36430.1 47.335 319 166 2 9 326 14 331 1.48e-103 308
Msa0240580 AT5G66390.1 47.771 314 162 2 12 325 22 333 3.62e-103 306
Msa0240580 AT1G44970.1 50.164 305 152 0 21 325 42 346 2.61e-102 305
Msa0240580 AT5G19880.1 50.814 307 148 2 22 325 23 329 5.03e-102 303
Msa0240580 AT1G49570.1 48.867 309 153 3 18 323 42 348 7.13e-100 299
Msa0240580 AT3G50990.1 47.386 306 160 1 22 327 39 343 7.73e-99 296
Msa0240580 AT1G14550.1 48.525 305 149 3 22 325 24 321 8.83e-96 287
Msa0240580 AT5G05340.1 47.386 306 150 4 22 325 28 324 3.92e-94 283
Msa0240580 AT1G14540.1 46.273 322 166 2 4 325 1 315 7.81e-92 277
Msa0240580 AT1G68850.1 46.624 311 152 8 24 325 30 335 2.30e-90 274
Msa0240580 AT4G16270.1 45.215 303 161 4 24 325 50 348 6.63e-90 273
Msa0240580 AT2G35380.1 48.344 302 152 3 28 325 34 335 1.64e-89 272
Msa0240580 AT5G58390.1 46.462 325 160 6 6 325 1 316 1.20e-88 269
Msa0240580 AT5G58400.1 44.062 320 167 5 9 325 15 325 2.61e-85 261
Msa0240580 AT3G03670.1 42.902 317 178 2 9 325 8 321 1.39e-84 259
Msa0240580 AT2G22420.1 42.020 307 163 5 24 325 23 319 5.41e-81 250
Msa0240580 AT2G41480.1 41.692 331 180 6 1 325 5 328 5.73e-80 247
Msa0240580 AT1G71695.1 44.156 308 160 6 24 328 44 342 6.80e-80 248
Msa0240580 AT5G51890.1 38.318 321 191 5 6 325 8 322 1.38e-78 243
Msa0240580 AT4G11290.1 41.033 329 184 6 4 325 1 326 7.10e-78 242
Msa0240580 AT5G64120.1 42.202 327 170 8 9 325 11 328 1.56e-77 241
Msa0240580 AT5G15180.1 40.984 305 170 5 24 325 32 329 1.68e-77 241
Msa0240580 AT3G01190.1 41.121 321 181 6 6 325 8 321 4.22e-77 239
Msa0240580 AT5G17820.1 40.850 306 169 5 20 325 20 313 5.44e-77 239
Msa0240580 AT4G25980.1 41.066 319 177 5 12 325 14 326 2.14e-76 238
Msa0240580 AT5G42180.1 41.722 302 167 6 24 324 23 316 4.50e-76 237
Msa0240580 AT5G17820.2 40.850 306 169 5 20 325 73 366 1.81e-75 237
Msa0240580 AT1G05260.1 40.062 322 187 5 7 326 9 326 7.25e-75 234
Msa0240580 AT4G37530.1 42.671 307 171 3 22 325 25 329 1.03e-74 234
Msa0240580 AT3G21770.1 41.100 309 176 5 16 322 21 325 2.90e-74 233
Msa0240580 AT5G39580.1 44.000 300 157 7 28 325 29 319 5.09e-73 229
Msa0240580 AT4G33420.1 41.009 317 168 7 15 325 22 325 2.20e-72 228
Msa0240580 AT4G33420.2 41.009 317 168 7 15 325 69 372 1.04e-71 228
Msa0240580 AT2G18980.1 40.498 321 180 5 9 325 10 323 2.43e-71 225
Msa0240580 AT1G30870.1 40.850 306 168 6 24 326 51 346 6.23e-71 225
Msa0240580 AT1G05240.1 39.344 305 177 5 24 325 26 325 2.46e-69 220
Msa0240580 AT1G05250.1 39.344 305 177 5 24 325 26 325 2.46e-69 220
Msa0240580 AT5G64100.1 42.525 301 160 7 28 325 41 331 2.56e-68 218
Msa0240580 AT4G30170.1 39.610 308 175 5 22 325 25 325 7.83e-68 216
Msa0240580 AT4G33870.1 35.629 334 177 5 24 322 68 398 8.04e-68 218
Msa0240580 AT4G31760.1 38.462 325 181 5 13 325 9 326 1.21e-67 216
Msa0240580 AT5G64110.1 41.528 301 165 6 28 325 38 330 5.35e-67 214
Msa0240580 AT5G14130.1 39.032 310 174 7 22 325 30 330 7.71e-67 214
Msa0240580 AT2G35380.2 46.964 247 127 3 83 325 1 247 8.39e-67 211
Msa0240580 AT4G37520.1 39.414 307 181 3 22 325 25 329 1.13e-66 213
Msa0240580 AT5G14130.2 39.032 310 174 7 22 325 71 371 1.82e-66 214
Msa0240580 AT3G49960.1 37.461 323 197 3 6 325 9 329 3.24e-66 212
Msa0240580 AT3G28200.1 37.987 308 177 5 22 325 19 316 1.14e-65 210
Msa0240580 AT5G40150.1 38.462 312 183 4 16 325 24 328 2.40e-65 209
Msa0240580 AT4G37520.2 39.088 307 179 4 22 325 25 326 4.23e-65 209
Msa0240580 AT4G37530.2 44.314 255 139 2 22 273 25 279 4.38e-65 207
Msa0240580 AT5G24070.1 41.489 282 152 6 51 327 64 337 1.10e-64 208
Msa0240580 AT2G24800.1 40.260 308 173 5 22 325 29 329 1.57e-64 207
Msa0240580 AT5G67400.1 40.584 308 176 5 22 325 25 329 1.77e-64 207
Msa0240580 AT2G34060.1 38.636 308 180 6 21 322 39 343 2.09e-64 208
Msa0240580 AT4G26010.1 36.957 322 187 6 5 325 3 309 4.67e-64 206
Msa0240580 AT4G26010.2 38.050 318 177 7 11 325 37 337 7.93e-64 206
Msa0240580 AT1G77100.1 39.628 323 177 8 11 325 7 319 2.00e-63 204
Msa0240580 AT2G39040.1 39.228 311 178 7 22 325 44 350 4.66e-63 204
Msa0240580 AT2G43480.1 41.429 280 151 6 51 325 64 335 4.35e-62 201
Msa0240580 AT5G22410.1 36.129 310 184 8 18 322 22 322 3.87e-61 199
Msa0240580 AT1G24110.1 34.528 307 194 5 22 325 20 322 5.09e-59 193
Msa0240580 AT1G34510.1 36.392 316 185 6 11 325 9 309 8.11e-59 192
Msa0240580 AT5G47000.1 33.754 317 200 5 12 325 21 330 1.35e-58 192
Msa0240580 AT4G17690.1 35.738 305 185 5 24 325 26 322 2.72e-56 186
Msa0240580 AT3G17070.1 33.131 329 204 7 7 325 17 339 1.24e-53 180
Msa0240580 AT2G37130.1 33.121 314 198 5 16 325 22 327 7.90e-49 167
Msa0240580 AT4G25980.2 45.604 182 95 3 12 193 59 236 3.95e-47 161
Msa0240580 AT2G37130.2 33.444 302 189 5 28 325 3 296 5.41e-47 161
Msa0240580 AT4G21960.1 31.751 337 212 6 1 327 1 329 9.13e-47 161
Msa0240580 AT3G17070.2 31.786 280 178 7 52 325 4 276 4.71e-40 142
Msa0240580 AT5G39580.2 45.614 171 88 3 28 198 29 194 7.80e-39 138
Msa0240580 AT2G24800.2 43.023 172 94 1 22 193 29 196 9.36e-35 127
Msa0240580 AT1G77490.2 25.651 269 150 11 58 309 106 341 1.34e-14 74.7
Msa0240580 AT1G77490.1 25.651 269 150 11 58 309 106 341 1.78e-14 74.3
Msa0240580 AT3G42570.1 29.787 141 86 4 53 191 20 149 3.64e-12 63.9

Find 71 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGTGTCCATGATTAAAA+TGG 0.262108 2_2:+15830657 Msa0240580:CDS
AAGTTGATCCAATGAGAAAA+AGG 0.270141 2_2:-15829609 None:intergenic
AATGAGACTGGCACCAATTC+GGG 0.277255 2_2:-15827765 None:intergenic
CCTCTTAATGAGTTTATGTT+TGG 0.284231 2_2:-15828476 None:intergenic
CACTTTGAAGTAAGCCTTTG+TGG 0.319319 2_2:-15830546 None:intergenic
GCAGATTCCTCTGGATTATC+TGG 0.328156 2_2:+15830742 Msa0240580:CDS
AGGGAACAATCTCACCAATT+TGG 0.328836 2_2:+15830471 Msa0240580:CDS
AATATGACTCTAAACACAAT+AGG 0.329328 2_2:-15827722 None:intergenic
CTGGTGATCAAGGGGAAATT+AGG 0.335959 2_2:+15830698 Msa0240580:CDS
GCCTTTGTGGCTTTGAAGAT+TGG 0.338713 2_2:-15830533 None:intergenic
CATAAACTCATTAAGAGGTT+TGG 0.346112 2_2:+15828481 Msa0240580:CDS
CGTGCAATATGTCCTCAAAA+TGG 0.347157 2_2:+15830445 Msa0240580:CDS
CATCAAGACTGCGCACAAAA+AGG 0.363723 2_2:-15827639 None:intergenic
CAAATTGATTTGGTGTAGTA+AGG 0.382467 2_2:-15830495 None:intergenic
ATGGGTTCCATGAATGTACT+AGG 0.387048 2_2:+15827611 Msa0240580:CDS
AAAGCTGCATTTCTTGTTCA+AGG 0.391405 2_2:+15829632 Msa0240580:CDS
CCAAACATAAACTCATTAAG+AGG 0.391730 2_2:+15828476 Msa0240580:CDS
ATGATTAAAATGGCTAATAT+TGG 0.393103 2_2:+15830667 Msa0240580:CDS
TGGTGTAGTAAGGTCCAAAT+TGG 0.395414 2_2:-15830485 None:intergenic
TGCATAGGTGCTCATACGTT+TGG 0.398741 2_2:+15830325 Msa0240580:intron
TCCCTCACTGATCCCCGAAT+TGG 0.403147 2_2:+15827752 Msa0240580:CDS
TTTATTAATGCAGATTCCTC+TGG 0.406967 2_2:+15830733 Msa0240580:CDS
GAATTGGTGCCAGTCTCATT+AGG 0.407331 2_2:+15827768 Msa0240580:CDS
GCTAATATTGGTGTACTAAC+TGG 0.408331 2_2:+15830679 Msa0240580:CDS
ATATGTCCTCAAAATGGAAC+AGG 0.412174 2_2:+15830451 Msa0240580:CDS
TGCGCAGTCTTGATGCATGC+TGG 0.413899 2_2:+15827647 Msa0240580:CDS
GGCAAATTCCATTGGGAAGA+AGG 0.414683 2_2:+15829537 Msa0240580:CDS
AATTTGTTGTCAAATTGATT+TGG 0.417521 2_2:-15830505 None:intergenic
TAATGAGACTGGCACCAATT+CGG 0.418061 2_2:-15827766 None:intergenic
ATAGCAATGGTATCTGCATT+AGG 0.425991 2_2:-15830589 None:intergenic
GGTATAGAAATGGACATGTT+TGG 0.432530 2_2:-15827700 None:intergenic
TTATACAATTTCAATAGCAC+TGG 0.440155 2_2:+15830379 Msa0240580:CDS
GGCCACCCCTAGTACATTCA+TGG 0.444356 2_2:-15827618 None:intergenic
AACACAATAGGGTATAGAAA+TGG 0.446200 2_2:-15827710 None:intergenic
ATATGACTCTAAACACAATA+GGG 0.454551 2_2:-15827721 None:intergenic
GGTGTACTAACTGGTGATCA+AGG 0.458052 2_2:+15830688 Msa0240580:CDS
ATACTTGAACAAAGCAATCA+TGG 0.458644 2_2:-15827799 None:intergenic
GTTGTGTTTAGAGTTTGATC+AGG 0.458651 2_2:-15830406 None:intergenic
CCCTCATGGCAAATTCCATT+GGG 0.466184 2_2:+15829530 Msa0240580:CDS
TCCCTCATGGCAAATTCCAT+TGG 0.478606 2_2:+15829529 Msa0240580:CDS
AGCTCAAGTAGCTTCTGTTC+TGG 0.481365 2_2:+15828583 Msa0240580:CDS
ACAGATTTAGTTACACTCTC+AGG 0.505239 2_2:+15829665 Msa0240580:CDS
CCCAATGGAATTTGCCATGA+GGG 0.510090 2_2:-15829530 None:intergenic
TGTGTTTAGAGTCATATTTG+AGG 0.521122 2_2:+15827727 Msa0240580:CDS
CATGTTTGGCTGTAAAATGA+AGG 0.525454 2_2:-15827686 None:intergenic
AATTCTCAAAGAAGAGAGGT+TGG 0.527401 2_2:-15830633 None:intergenic
GTGTACTAACTGGTGATCAA+GGG 0.539547 2_2:+15830689 Msa0240580:CDS
TTGGTTTATGAACAGGGAGG+AGG 0.539593 2_2:+15829506 Msa0240580:intron
AAACTATCCCTTCTTCCCAA+TGG 0.540488 2_2:-15829545 None:intergenic
AAGCTGCATTTCTTGTTCAA+GGG 0.544571 2_2:+15829633 Msa0240580:CDS
TTCCATGAATGTACTAGGGG+TGG 0.544977 2_2:+15827616 Msa0240580:CDS
TGGGTTCCATGAATGTACTA+GGG 0.550297 2_2:+15827612 Msa0240580:CDS
GCAAATTCCATTGGGAAGAA+GGG 0.554150 2_2:+15829538 Msa0240580:CDS
GAAATGAAGCCTAATGAGAC+TGG 0.563857 2_2:-15827777 None:intergenic
ACCAATTCGGGGATCAGTGA+GGG 0.574096 2_2:-15827753 None:intergenic
TGTTTGTGACAGGGTTGCGA+TGG 0.579435 2_2:+15828401 Msa0240580:intron
CTAAAATTCTCAAAGAAGAG+AGG 0.579859 2_2:-15830637 None:intergenic
TCAGCACAAGAAACAGTGGC+TGG 0.593952 2_2:-15828545 None:intergenic
GCGCAGTCTTGATGCATGCT+GGG 0.594442 2_2:+15827648 Msa0240580:CDS
AACAGGGAGGAGGTCCCTCA+TGG 0.596475 2_2:+15829516 Msa0240580:intron
AAAGCTATTAACAATAGCAA+TGG 0.599480 2_2:-15830602 None:intergenic
TCCAATCTTCAAAGCCACAA+AGG 0.630443 2_2:+15830532 Msa0240580:CDS
ATGAGACTGGCACCAATTCG+GGG 0.640565 2_2:-15827764 None:intergenic
GATTCCTCTGGATTATCTGG+TGG 0.641989 2_2:+15830745 Msa0240580:CDS
TGTACTAACTGGTGATCAAG+GGG 0.649642 2_2:+15830690 Msa0240580:CDS
AATATCAGCACAAGAAACAG+TGG 0.657026 2_2:-15828549 None:intergenic
CACCAATTCGGGGATCAGTG+AGG 0.657501 2_2:-15827754 None:intergenic
GGGTTCCATGAATGTACTAG+GGG 0.674090 2_2:+15827613 Msa0240580:CDS
TCCCAATGGAATTTGCCATG+AGG 0.679713 2_2:-15829531 None:intergenic
TATGTCCTCAAAATGGAACA+GGG 0.723062 2_2:+15830452 Msa0240580:CDS
TGCACCACCAGATAATCCAG+AGG 0.739615 2_2:-15830749 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAAAAATAGC+AGG + chr2_2:15828684-15828703 Msa0240580:intron 10.0%
!!! ATTATTTTTAGTATATATGT+AGG - chr2_2:15828980-15828999 None:intergenic 10.0%
!!! ACTAATATAAATAATTTGTT+TGG + chr2_2:15829107-15829126 Msa0240580:intron 10.0%
!!! TAGTTTTATAGTGATAATTT+TGG + chr2_2:15828859-15828878 Msa0240580:intron 15.0%
!!! AGTTTTATAGTGATAATTTT+GGG + chr2_2:15828860-15828879 Msa0240580:intron 15.0%
!! TAAACTAGTAACTAATATAT+TGG + chr2_2:15829487-15829506 Msa0240580:intron 15.0%
!! AATTTGAAGATAATTTACAT+CGG - chr2_2:15829905-15829924 None:intergenic 15.0%
!! TTAATCATAACTGATATAAA+AGG - chr2_2:15829986-15830005 None:intergenic 15.0%
!!! AAAAATGTTTGTTTTTACAA+TGG + chr2_2:15830016-15830035 Msa0240580:intron 15.0%
!!! AAATAAAAATCGATTTACAT+TGG - chr2_2:15830048-15830067 None:intergenic 15.0%
!!! TTTTTTTTTTGATACAATGT+TGG - chr2_2:15830100-15830119 None:intergenic 15.0%
!!! AACTTTTTATTAAACTTTGT+TGG - chr2_2:15830131-15830150 None:intergenic 15.0%
!! AATATTATGTAACATATATG+TGG + chr2_2:15830279-15830298 Msa0240580:intron 15.0%
!! TATACAAAAGTTAAAATTTC+AGG - chr2_2:15830305-15830324 None:intergenic 15.0%
!! AGAAATCATGATCTATATAT+AGG - chr2_2:15827866-15827885 None:intergenic 20.0%
!!! AAATTAAAGTGGATTGTATT+AGG - chr2_2:15827906-15827925 None:intergenic 20.0%
!!! AGAATTTTGGTTATTATTGA+CGG + chr2_2:15827941-15827960 Msa0240580:intron 20.0%
!!! TTTTATCTATATAACTAGCT+AGG - chr2_2:15828647-15828666 None:intergenic 20.0%
!! GTAATCAATGAATTAATATC+TGG + chr2_2:15828712-15828731 Msa0240580:intron 20.0%
!! TAATTAATGTTCTTAGAGAA+TGG - chr2_2:15828745-15828764 None:intergenic 20.0%
!!! ATTTTATTGTTTTCTTTTGC+TGG + chr2_2:15828827-15828846 Msa0240580:intron 20.0%
!!! TTTTATTGTTTTCTTTTGCT+GGG + chr2_2:15828828-15828847 Msa0240580:intron 20.0%
!!! ATTTTTTTTTTTTGACGAAC+AGG + chr2_2:15828945-15828964 Msa0240580:intron 20.0%
!!! TTTTTGTATGTTTTGTTTTC+AGG - chr2_2:15829067-15829086 None:intergenic 20.0%
!!! AGTTTTTATCTACTTAATGT+GGG - chr2_2:15829253-15829272 None:intergenic 20.0%
!!! AAGTTTTTATCTACTTAATG+TGG - chr2_2:15829254-15829273 None:intergenic 20.0%
!! GAATACAGAAAAATAAAAGT+GGG - chr2_2:15829435-15829454 None:intergenic 20.0%
!! AGAATACAGAAAAATAAAAG+TGG - chr2_2:15829436-15829455 None:intergenic 20.0%
!!! TATTAGTTACTAGTTTAAGA+TGG - chr2_2:15829484-15829503 None:intergenic 20.0%
!!! TAATATATTGGTTTATGAAC+AGG + chr2_2:15829499-15829518 Msa0240580:intron 20.0%
!!! AATATATTGGTTTATGAACA+GGG + chr2_2:15829500-15829519 Msa0240580:intron 20.0%
!!! AAGCTTTTCTATTAAATTGT+TGG - chr2_2:15829718-15829737 None:intergenic 20.0%
!!! CGATTTTTATTTTTGTACAA+CGG + chr2_2:15830056-15830075 Msa0240580:intron 20.0%
!!! TTTAACTTTTGTATATGCAT+AGG + chr2_2:15830310-15830329 Msa0240580:intron 20.0%
!!! AATTTGTTGTCAAATTGATT+TGG - chr2_2:15830508-15830527 None:intergenic 20.0%
!!! AATATTAGCCATTTTAATCA+TGG - chr2_2:15830668-15830687 None:intergenic 20.0%
!! ATGATTAAAATGGCTAATAT+TGG + chr2_2:15830667-15830686 Msa0240580:CDS 20.0%
! ATATGACTCTAAACACAATA+GGG - chr2_2:15827724-15827743 None:intergenic 25.0%
! AATATGACTCTAAACACAAT+AGG - chr2_2:15827725-15827744 None:intergenic 25.0%
!! TATATAGGAAGAGCTTTATA+TGG - chr2_2:15827851-15827870 None:intergenic 25.0%
! AATAACCAAAATTCTTGTAG+TGG - chr2_2:15827936-15827955 None:intergenic 25.0%
!! ATTGTGTTACTGAAAAAACA+TGG + chr2_2:15828264-15828283 Msa0240580:intron 25.0%
!! CATAGATTTTTGTCTTTTAG+TGG + chr2_2:15828333-15828352 Msa0240580:intron 25.0%
!!! ATTAGCTTTAGTCAAACAAA+AGG - chr2_2:15829164-15829183 None:intergenic 25.0%
! TAAGACTTAAACCAATAGTA+AGG - chr2_2:15829342-15829361 None:intergenic 25.0%
!!! ACTATTGGTTTAAGTCTTAA+CGG + chr2_2:15829343-15829362 Msa0240580:intron 25.0%
! TACAATAAGAGAATCTACAT+CGG - chr2_2:15829850-15829869 None:intergenic 25.0%
!! AAATCGATTTACATTGGTTA+AGG - chr2_2:15830042-15830061 None:intergenic 25.0%
! TTATACAATTTCAATAGCAC+TGG + chr2_2:15830379-15830398 Msa0240580:CDS 25.0%
! AAAGCTATTAACAATAGCAA+TGG - chr2_2:15830605-15830624 None:intergenic 25.0%
AACACAATAGGGTATAGAAA+TGG - chr2_2:15827713-15827732 None:intergenic 30.0%
! TGTGTTTAGAGTCATATTTG+AGG + chr2_2:15827727-15827746 Msa0240580:CDS 30.0%
ATACTTGAACAAAGCAATCA+TGG - chr2_2:15827802-15827821 None:intergenic 30.0%
GTGGTTCATTCAAATTAAAG+TGG - chr2_2:15827917-15827936 None:intergenic 30.0%
! ATGAACCACTACAAGAATTT+TGG + chr2_2:15827928-15827947 Msa0240580:intron 30.0%
AATACACATTAGTGGCTAAT+CGG + chr2_2:15827999-15828018 Msa0240580:intron 30.0%
ATCTGATGAAGAATTACTGA+GGG + chr2_2:15828099-15828118 Msa0240580:intron 30.0%
TTTCCTTCAGTAATTACTGA+CGG + chr2_2:15828125-15828144 Msa0240580:intron 30.0%
!!! TTCTTGTTTTACGATACTGA+CGG - chr2_2:15828175-15828194 None:intergenic 30.0%
TTCATGTGCACTACATTAAT+TGG - chr2_2:15828204-15828223 None:intergenic 30.0%
ACATGCATAAACAACAACTT+TGG - chr2_2:15828384-15828403 None:intergenic 30.0%
CCTCTTAATGAGTTTATGTT+TGG - chr2_2:15828479-15828498 None:intergenic 30.0%
CCAAACATAAACTCATTAAG+AGG + chr2_2:15828476-15828495 Msa0240580:CDS 30.0%
CATAAACTCATTAAGAGGTT+TGG + chr2_2:15828481-15828500 Msa0240580:CDS 30.0%
ATGATACTTGAAACTACTAC+TGG + chr2_2:15828792-15828811 Msa0240580:intron 30.0%
TGCTCACTAAAATAATTGAC+AGG + chr2_2:15828916-15828935 Msa0240580:intron 30.0%
!! GCTAATGTTGAACTTGTTAA+AGG + chr2_2:15829178-15829197 Msa0240580:intron 30.0%
GTTCAACTCAAATACTAATC+CGG - chr2_2:15829316-15829335 None:intergenic 30.0%
!!! GGTTTAAGTTTTAACTTTCG+TGG - chr2_2:15829393-15829412 None:intergenic 30.0%
AGTTGATCCAATGAGAAAAA+GGG - chr2_2:15829611-15829630 None:intergenic 30.0%
! AAGTTGATCCAATGAGAAAA+AGG - chr2_2:15829612-15829631 None:intergenic 30.0%
ACAATAAGAGAATCTACATC+GGG - chr2_2:15829849-15829868 None:intergenic 30.0%
GATTCTCTTATTGTAGAATG+TGG + chr2_2:15829855-15829874 Msa0240580:intron 30.0%
!! CAAATTGATTTGGTGTAGTA+AGG - chr2_2:15830498-15830517 None:intergenic 30.0%
CTAAAATTCTCAAAGAAGAG+AGG - chr2_2:15830640-15830659 None:intergenic 30.0%
! TAGAGTGTCCATGATTAAAA+TGG + chr2_2:15830657-15830676 Msa0240580:CDS 30.0%
TTTATTAATGCAGATTCCTC+TGG + chr2_2:15830733-15830752 Msa0240580:CDS 30.0%
CATGTTTGGCTGTAAAATGA+AGG - chr2_2:15827689-15827708 None:intergenic 35.0%
GGTATAGAAATGGACATGTT+TGG - chr2_2:15827703-15827722 None:intergenic 35.0%
!! AAAGTGGATTGTATTAGGTC+TGG - chr2_2:15827901-15827920 None:intergenic 35.0%
CCACTAATGTGTATTACTGA+GGG - chr2_2:15827994-15828013 None:intergenic 35.0%
GTCAGTAACTTTATTGACGT+CGG - chr2_2:15828050-15828069 None:intergenic 35.0%
GACGTCAATAAAGTTACTGA+CGG + chr2_2:15828049-15828068 Msa0240580:intron 35.0%
GATCTGATGAAGAATTACTG+AGG + chr2_2:15828098-15828117 Msa0240580:intron 35.0%
ATTCCGTCAGTAATTACTGA+AGG - chr2_2:15828131-15828150 None:intergenic 35.0%
!!! ACTGACGGATTTTTCTATAC+CGG - chr2_2:15828160-15828179 None:intergenic 35.0%
TGTTTATGCATGTTTGTGAC+AGG + chr2_2:15828391-15828410 Msa0240580:intron 35.0%
GTTTATGCATGTTTGTGACA+GGG + chr2_2:15828392-15828411 Msa0240580:intron 35.0%
AATATCAGCACAAGAAACAG+TGG - chr2_2:15828552-15828571 None:intergenic 35.0%
!! AGTGATAATTTTGGGTAACG+AGG + chr2_2:15828868-15828887 Msa0240580:intron 35.0%
TAGCTAAAATTGAACCCCAT+TGG + chr2_2:15829008-15829027 Msa0240580:intron 35.0%
TTGATCTGATCAAAGCCAAT+GGG - chr2_2:15829026-15829045 None:intergenic 35.0%
CAAAAGGTTCAACATTAGCT+AGG - chr2_2:15829148-15829167 None:intergenic 35.0%
TCAAATACTAATCCGGTAGA+TGG - chr2_2:15829309-15829328 None:intergenic 35.0%
AGTTGAACTCTCCTTACTAT+TGG + chr2_2:15829328-15829347 Msa0240580:intron 35.0%
TTGGTTTAAGTCTTAACGGT+TGG + chr2_2:15829347-15829366 Msa0240580:intron 35.0%
!! ATATTGGTTTATGAACAGGG+AGG + chr2_2:15829503-15829522 Msa0240580:intron 35.0%
!!! TGGAAGGTTTTGATTTGCAA+GGG - chr2_2:15829585-15829604 None:intergenic 35.0%
AAAGCTGCATTTCTTGTTCA+AGG + chr2_2:15829632-15829651 Msa0240580:CDS 35.0%
AAGCTGCATTTCTTGTTCAA+GGG + chr2_2:15829633-15829652 Msa0240580:CDS 35.0%
ACAGATTTAGTTACACTCTC+AGG + chr2_2:15829665-15829684 Msa0240580:CDS 35.0%
! GTTGTGTTTAGAGTTTGATC+AGG - chr2_2:15830409-15830428 None:intergenic 35.0%
ATATGTCCTCAAAATGGAAC+AGG + chr2_2:15830451-15830470 Msa0240580:CDS 35.0%
TATGTCCTCAAAATGGAACA+GGG + chr2_2:15830452-15830471 Msa0240580:CDS 35.0%
ATAGCAATGGTATCTGCATT+AGG - chr2_2:15830592-15830611 None:intergenic 35.0%
AATTCTCAAAGAAGAGAGGT+TGG - chr2_2:15830636-15830655 None:intergenic 35.0%
GCTAATATTGGTGTACTAAC+TGG + chr2_2:15830679-15830698 Msa0240580:CDS 35.0%
ATGGGTTCCATGAATGTACT+AGG + chr2_2:15827611-15827630 Msa0240580:CDS 40.0%
TGGGTTCCATGAATGTACTA+GGG + chr2_2:15827612-15827631 Msa0240580:CDS 40.0%
TAATGAGACTGGCACCAATT+CGG - chr2_2:15827769-15827788 None:intergenic 40.0%
GAAATGAAGCCTAATGAGAC+TGG - chr2_2:15827780-15827799 None:intergenic 40.0%
CCCTCAGTAATACACATTAG+TGG + chr2_2:15827991-15828010 Msa0240580:intron 40.0%
GCCACTAATGTGTATTACTG+AGG - chr2_2:15827995-15828014 None:intergenic 40.0%
! ACGGAATTTTCCCTCAGTAA+TGG + chr2_2:15828068-15828087 Msa0240580:intron 40.0%
ATCACTCACTCCATTACTGA+GGG - chr2_2:15828081-15828100 None:intergenic 40.0%
TGATCTGATCAAAGCCAATG+GGG - chr2_2:15829025-15829044 None:intergenic 40.0%
GTTGATCTGATCAAAGCCAA+TGG - chr2_2:15829027-15829046 None:intergenic 40.0%
!! AACTTGTTAAAGGAGCGTCT+AGG + chr2_2:15829188-15829207 Msa0240580:intron 40.0%
TGGATATGTTGTACGTGAGA+AGG - chr2_2:15829464-15829483 None:intergenic 40.0%
GCAAATTCCATTGGGAAGAA+GGG + chr2_2:15829538-15829557 Msa0240580:CDS 40.0%
AAACTATCCCTTCTTCCCAA+TGG - chr2_2:15829548-15829567 None:intergenic 40.0%
!!! CTGGAAGGTTTTGATTTGCA+AGG - chr2_2:15829586-15829605 None:intergenic 40.0%
ATTAGACACTTTCTTGTCCC+TGG + chr2_2:15829922-15829941 Msa0240580:intron 40.0%
TTAGACACTTTCTTGTCCCT+GGG + chr2_2:15829923-15829942 Msa0240580:intron 40.0%
! ACTTTCAATTTTCCAGCGTC+GGG - chr2_2:15829961-15829980 None:intergenic 40.0%
! CACTTTCAATTTTCCAGCGT+CGG - chr2_2:15829962-15829981 None:intergenic 40.0%
CGTGCAATATGTCCTCAAAA+TGG + chr2_2:15830445-15830464 Msa0240580:CDS 40.0%
! TTGTTCCCTGTTCCATTTTG+AGG - chr2_2:15830460-15830479 None:intergenic 40.0%
AGGGAACAATCTCACCAATT+TGG + chr2_2:15830471-15830490 Msa0240580:CDS 40.0%
TGGTGTAGTAAGGTCCAAAT+TGG - chr2_2:15830488-15830507 None:intergenic 40.0%
TCCAATCTTCAAAGCCACAA+AGG + chr2_2:15830532-15830551 Msa0240580:CDS 40.0%
!! CACTTTGAAGTAAGCCTTTG+TGG - chr2_2:15830549-15830568 None:intergenic 40.0%
GTGTACTAACTGGTGATCAA+GGG + chr2_2:15830689-15830708 Msa0240580:CDS 40.0%
TGTACTAACTGGTGATCAAG+GGG + chr2_2:15830690-15830709 Msa0240580:CDS 40.0%
GGGTTCCATGAATGTACTAG+GGG + chr2_2:15827613-15827632 Msa0240580:CDS 45.0%
TTCCATGAATGTACTAGGGG+TGG + chr2_2:15827616-15827635 Msa0240580:CDS 45.0%
CATCAAGACTGCGCACAAAA+AGG - chr2_2:15827642-15827661 None:intergenic 45.0%
AATGAGACTGGCACCAATTC+GGG - chr2_2:15827768-15827787 None:intergenic 45.0%
!! GAATTGGTGCCAGTCTCATT+AGG + chr2_2:15827768-15827787 Msa0240580:CDS 45.0%
GATCACTCACTCCATTACTG+AGG - chr2_2:15828082-15828101 None:intergenic 45.0%
!! GACGGATTTTTCTATACCGG+CGG - chr2_2:15828157-15828176 None:intergenic 45.0%
AGCTCAAGTAGCTTCTGTTC+TGG + chr2_2:15828583-15828602 Msa0240580:CDS 45.0%
!! AAAGGAGCGTCTAGGATTCA+TGG + chr2_2:15829196-15829215 Msa0240580:intron 45.0%
GGCATACAAGTCTTAACTGC+TGG - chr2_2:15829414-15829433 None:intergenic 45.0%
TTGGTTTATGAACAGGGAGG+AGG + chr2_2:15829506-15829525 Msa0240580:intron 45.0%
TCCCTCATGGCAAATTCCAT+TGG + chr2_2:15829529-15829548 Msa0240580:CDS 45.0%
CCCAATGGAATTTGCCATGA+GGG - chr2_2:15829533-15829552 None:intergenic 45.0%
CCCTCATGGCAAATTCCATT+GGG + chr2_2:15829530-15829549 Msa0240580:CDS 45.0%
TCCCAATGGAATTTGCCATG+AGG - chr2_2:15829534-15829553 None:intergenic 45.0%
GGCAAATTCCATTGGGAAGA+AGG + chr2_2:15829537-15829556 Msa0240580:CDS 45.0%
!!! GGTTTTGATTTGCAAGGGCT+TGG - chr2_2:15829580-15829599 None:intergenic 45.0%
!! ATGAGAAAAAGGGTGCTGGA+AGG - chr2_2:15829601-15829620 None:intergenic 45.0%
! TCCAGCACCCTTTTTCTCAT+TGG + chr2_2:15829601-15829620 Msa0240580:CDS 45.0%
! TCCAATGAGAAAAAGGGTGC+TGG - chr2_2:15829605-15829624 None:intergenic 45.0%
TAGACACTTTCTTGTCCCTG+GGG + chr2_2:15829924-15829943 Msa0240580:intron 45.0%
! CTTTCAATTTTCCAGCGTCG+GGG - chr2_2:15829960-15829979 None:intergenic 45.0%
TGCATAGGTGCTCATACGTT+TGG + chr2_2:15830325-15830344 Msa0240580:intron 45.0%
!! GCCTTTGTGGCTTTGAAGAT+TGG - chr2_2:15830536-15830555 None:intergenic 45.0%
GGTGTACTAACTGGTGATCA+AGG + chr2_2:15830688-15830707 Msa0240580:CDS 45.0%
CTGGTGATCAAGGGGAAATT+AGG + chr2_2:15830698-15830717 Msa0240580:CDS 45.0%
GCAGATTCCTCTGGATTATC+TGG + chr2_2:15830742-15830761 Msa0240580:CDS 45.0%
GATTCCTCTGGATTATCTGG+TGG + chr2_2:15830745-15830764 Msa0240580:CDS 45.0%
ACCAATTCGGGGATCAGTGA+GGG - chr2_2:15827756-15827775 None:intergenic 50.0%
ATGAGACTGGCACCAATTCG+GGG - chr2_2:15827767-15827786 None:intergenic 50.0%
TTACTGACGGAATAGTCCGC+CGG + chr2_2:15828138-15828157 Msa0240580:intron 50.0%
TGTTTGTGACAGGGTTGCGA+TGG + chr2_2:15828401-15828420 Msa0240580:intron 50.0%
TCAGCACAAGAAACAGTGGC+TGG - chr2_2:15828548-15828567 None:intergenic 50.0%
CGTGAGACTCTTCCATCTAC+CGG + chr2_2:15829294-15829313 Msa0240580:intron 50.0%
TGCACCACCAGATAATCCAG+AGG - chr2_2:15830752-15830771 None:intergenic 50.0%
GGCCACCCCTAGTACATTCA+TGG - chr2_2:15827621-15827640 None:intergenic 55.0%
TGCGCAGTCTTGATGCATGC+TGG + chr2_2:15827647-15827666 Msa0240580:CDS 55.0%
GCGCAGTCTTGATGCATGCT+GGG + chr2_2:15827648-15827667 Msa0240580:CDS 55.0%
TCCCTCACTGATCCCCGAAT+TGG + chr2_2:15827752-15827771 Msa0240580:CDS 55.0%
CACCAATTCGGGGATCAGTG+AGG - chr2_2:15827757-15827776 None:intergenic 55.0%
CGGGGTGAAAAATGACCCCA+GGG - chr2_2:15829942-15829961 None:intergenic 55.0%
TCGGGGTGAAAAATGACCCC+AGG - chr2_2:15829943-15829962 None:intergenic 55.0%
!!! GTCATTTTTCACCCCGACGC+TGG + chr2_2:15829946-15829965 Msa0240580:intron 55.0%
AACAGGGAGGAGGTCCCTCA+TGG + chr2_2:15829516-15829535 Msa0240580:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 15827611 15830801 15827611 ID=Msa0240580;Name=Msa0240580
chr2_2 mRNA 15827611 15830801 15827611 ID=Msa0240580-mRNA-1;Parent=Msa0240580;Name=Msa0240580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.25|1|1|1|4|0|344
chr2_2 exon 15827611 15827817 15827611 ID=Msa0240580-mRNA-1:exon:6496;Parent=Msa0240580-mRNA-1
chr2_2 exon 15828413 15828604 15828413 ID=Msa0240580-mRNA-1:exon:6497;Parent=Msa0240580-mRNA-1
chr2_2 exon 15829521 15829686 15829521 ID=Msa0240580-mRNA-1:exon:6498;Parent=Msa0240580-mRNA-1
chr2_2 exon 15830332 15830801 15830332 ID=Msa0240580-mRNA-1:exon:6499;Parent=Msa0240580-mRNA-1
chr2_2 CDS 15827611 15827817 15827611 ID=Msa0240580-mRNA-1:cds;Parent=Msa0240580-mRNA-1
chr2_2 CDS 15828413 15828604 15828413 ID=Msa0240580-mRNA-1:cds;Parent=Msa0240580-mRNA-1
chr2_2 CDS 15829521 15829686 15829521 ID=Msa0240580-mRNA-1:cds;Parent=Msa0240580-mRNA-1
chr2_2 CDS 15830332 15830801 15830332 ID=Msa0240580-mRNA-1:cds;Parent=Msa0240580-mRNA-1
Gene Sequence

>Msa0240580

ATGGGTTCCATGAATGTACTAGGGGTGGCCTTTTTGTGCGCAGTCTTGATGCATGCTGGGTATGCTCAGCTTAATCCTTCATTTTACAGCCAAACATGTCCATTTCTATACCCTATTGTGTTTAGAGTCATATTTGAGGCTTCCCTCACTGATCCCCGAATTGGTGCCAGTCTCATTAGGCTTCATTTCCATGATTGCTTTGTTCAAGGTTGCGATGGATCAGTTTTGTTGAACAACACTGATACAATTGTAAGTGAGCAAGATGCATTTCCAAACATAAACTCATTAAGAGGTTTGGATGTTGTGAATCAAATCAAGACAGCAGTTGAAAATGAATGTCCAGCCACTGTTTCTTGTGCTGATATTCTTACTATTGCAGCTCAAGTAGCTTCTGTTCTGGGAGGAGGTCCCTCATGGCAAATTCCATTGGGAAGAAGGGATAGTTTAACAGCAAACCAAGCCCTTGCAAATCAAAACCTTCCAGCACCCTTTTTCTCATTGGATCAACTTAAAGCTGCATTTCTTGTTCAAGGGCTCAACACTACAGATTTAGTTACACTCTCAGGTGCTCATACGTTTGGAAGAGCTAAGTGTAGCACATTCATTGATCGTTTATACAATTTCAATAGCACTGGAAATCCTGATCAAACTCTAAACACAACTTACTTACAAACATTGCGTGCAATATGTCCTCAAAATGGAACAGGGAACAATCTCACCAATTTGGACCTTACTACACCAAATCAATTTGACAACAAATTTTACTCCAATCTTCAAAGCCACAAAGGCTTACTTCAAAGTGATCAAGAGCTATTCTCAACTCCTAATGCAGATACCATTGCTATTGTTAATAGCTTTAGTAGTAACCAACCTCTCTTCTTTGAGAATTTTAGAGTGTCCATGATTAAAATGGCTAATATTGGTGTACTAACTGGTGATCAAGGGGAAATTAGGTTGCAATGTAATTTTATTAATGCAGATTCCTCTGGATTATCTGGTGGTGCATCAAAAGATGAACTTTTAAGCTCATTCTAA

Protein sequence

>Msa0240580

MGSMNVLGVAFLCAVLMHAGYAQLNPSFYSQTCPFLYPIVFRVIFEASLTDPRIGASLIRLHFHDCFVQGCDGSVLLNNTDTIVSEQDAFPNINSLRGLDVVNQIKTAVENECPATVSCADILTIAAQVASVLGGGPSWQIPLGRRDSLTANQALANQNLPAPFFSLDQLKAAFLVQGLNTTDLVTLSGAHTFGRAKCSTFIDRLYNFNSTGNPDQTLNTTYLQTLRAICPQNGTGNNLTNLDLTTPNQFDNKFYSNLQSHKGLLQSDQELFSTPNADTIAIVNSFSSNQPLFFENFRVSMIKMANIGVLTGDQGEIRLQCNFINADSSGLSGGASKDELLSSF*