AlfalfaGEDB | Msa1060320

M. sativa cultivar zhongmu-4 / Msa1060320

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060320	XP_013448805.1	95.584	1155	26	4	1	1152	1	1133	0.0	2199

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060320	sp\|C0LGV1\|RGI2_ARATH	66.132	1122	331	10	7	1120	13	1093	0.0	1457

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060320	A0A072TZI2	95.584	1155	26	4	1	1152	1	1133	0.0	2199

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024280	Msa1060320	0.825887	3.668851e-54	-8.615850e-47
Msa0048950	Msa1060320	0.831720	1.422256e-55	-8.615850e-47
Msa0059880	Msa1060320	0.848205	7.109872e-60	-8.615850e-47
Msa0143710	Msa1060320	0.801109	1.051415e-48	-8.615850e-47
Msa0150910	Msa1060320	0.819955	8.850314e-53	-8.615850e-47
Msa0163340	Msa1060320	0.842944	1.897105e-58	-8.615850e-47
Msa0343720	Msa1060320	0.809443	1.887895e-50	-8.615850e-47
Msa0469550	Msa1060320	0.802986	4.324884e-49	-8.615850e-47
Msa0515260	Msa1060320	0.802645	5.083896e-49	-8.615850e-47
Msa0535570	Msa1060320	0.800902	1.159021e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060320	MtrunA17_Chr7g0237821	95.584	1155	26	4	1	1152	1	1133	0.0	2199
Msa1060320	MtrunA17_Chr3g0126181	49.955	1103	486	11	9	1101	7	1053	0.0	996
Msa1060320	MtrunA17_Chr5g0419721	54.711	881	313	11	278	1110	99	941	0.0	915
Msa1060320	MtrunA17_Chr5g0419721	64.833	509	169	5	12	518	27	527	0.0	597
Msa1060320	MtrunA17_Chr5g0419721	31.868	182	99	2	507	663	88	269	1.21e-12	72.8
Msa1060320	MtrunA17_Chr4g0058761	46.303	1082	522	8	22	1095	23	1053	0.0	912
Msa1060320	MtrunA17_Chr3g0102901	46.239	1090	499	11	22	1093	35	1055	0.0	900
Msa1060320	MtrunA17_Chr1g0201241	41.037	1099	533	17	15	1098	9	1007	0.0	745
Msa1060320	MtrunA17_Chr2g0312651	37.544	1124	612	17	10	1094	15	1087	0.0	659
Msa1060320	MtrunA17_Chr1g0169841	37.764	1091	589	17	47	1097	53	1093	0.0	654

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1060320	AT5G48940.1	66.132	1122	331	10	7	1120	13	1093	1457
Msa1060320	AT3G24240.1	63.974	1077	347	6	29	1102	38	1076	1367
Msa1060320	AT5G56040.2	46.783	1088	491	14	24	1094	26	1042	949
Msa1060320	AT4G26540.1	46.285	1117	513	13	24	1120	23	1072	906
Msa1060320	AT1G34110.2	46.422	1062	517	11	44	1098	42	1058	840
Msa1060320	AT1G34110.1	46.341	1066	520	11	44	1102	42	1062	840
Msa1060320	AT5G56040.1	46.793	951	448	11	33	972	35	938	831
Msa1060320	AT5G63930.1	39.982	1088	563	19	49	1098	50	1085	687
Msa1060320	AT5G63930.2	39.888	1068	555	18	66	1098	6	1021	668
Msa1060320	AT1G17230.2	36.453	1122	620	16	13	1093	7	1076	667

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Find 214 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGAAGGGAGTTTGG+TGG	0.587790	7_2:-48202074	None:intergenic
AAAAGCGATGTATACAGCTA+TGG	0.590778	7_2:+48205203	Msa1060320:CDS
AAAATGGGAGGAGTGTGAAG+AGG	0.560966	7_2:-48202000	None:intergenic
AAACAATCTCCTAACTCTGA+TGG	0.516065	7_2:-48203150	None:intergenic
AAACATGAATCATGACCATT+AGG	0.414623	7_2:-48204005	None:intergenic
AAGAACATTGTTAGGTTCTT+GGG	0.356211	7_2:+48204512	Msa1060320:CDS
AAGACAAATCCAAAGCCTCA+AGG	0.592425	7_2:-48203176	None:intergenic
AAGACCTATGAGGATGTTGT+TGG	0.466941	7_2:-48204732	None:intergenic
AAGCTTCCAAGACTTCCATT+TGG	0.471131	7_2:-48204581	None:intergenic
AAGGAAAAGGAAGGGCTAGT+TGG	0.519975	7_2:-48202192	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAAGATAGTGACTTCAT+TGG	-	chr7_2:48202038-48202057	None:intergenic	30.0%
AAGTCACTATCTTACTTTCA+TGG	+	chr7_2:48202041-48202060	Msa1060320:CDS	30.0%
AGCTAAGATCAATGGTAATA+AGG	-	chr7_2:48202312-48202331	None:intergenic	30.0%
ACTATTTGAGCTAAGATCAA+TGG	-	chr7_2:48202320-48202339	None:intergenic	30.0%
TTAAACTCTAACCAATTGAC+AGG	+	chr7_2:48202397-48202416	Msa1060320:CDS	30.0%
GGTTATTGTCAAAAATGTCA+AGG	-	chr7_2:48202465-48202484	None:intergenic	30.0%
AATCTTGAAGTTATAAGAGC+TGG	+	chr7_2:48202523-48202542	Msa1060320:CDS	30.0%
CTTAACTTACCTAACGAATA+AGG	-	chr7_2:48202649-48202668	None:intergenic	30.0%
TTGTATGAGAATGATCTTTC+TGG	+	chr7_2:48202760-48202779	Msa1060320:CDS	30.0%
ATAAGCTTACCTATCTCAAA+AGG	-	chr7_2:48202793-48202812	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	48201956	48205658	48201956	ID=Msa1060320;Name=Msa1060320
chr7_2	mRNA	48201956	48205658	48201956	ID=Msa1060320-mRNA-1;Parent=Msa1060320;Name=Msa1060320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|1152
chr7_2	exon	48201956	48204863	48201956	ID=Msa1060320-mRNA-1:exon:8712;Parent=Msa1060320-mRNA-1
chr7_2	exon	48205108	48205658	48205108	ID=Msa1060320-mRNA-1:exon:8713;Parent=Msa1060320-mRNA-1
chr7_2	CDS	48201956	48204863	48201956	ID=Msa1060320-mRNA-1:cds;Parent=Msa1060320-mRNA-1
chr7_2	CDS	48205108	48205658	48205108	ID=Msa1060320-mRNA-1:cds;Parent=Msa1060320-mRNA-1

Gene Sequence

>Msa1060320

ATGTCTTCTCAACCTTTCATCACAAACCACCATCTTCTCCTCCTCCTCTTCACACTCCTCCCATTTTCCTTTGCTTCCACCAATGAAGTCACTATCTTACTTTCATGGACTCACACTTCCACCAAACTCCCTTCATCTTTTTCCAACTGGAACCCTTTGGACTCAAATCCATGCAAATGGTCATTCATAACATGCTCATCACAAAACTTTGTAACTGAAATCAACATCCAAAATGTCCAACTAGCCCTTCCTTTTCCTTCCAATATCTCTTCACTTTCCAACCTTCAAAAGCTAGCCATTTCAGGTGCCAACCTTACTGGAACCATTCCACATGAAATTGGTAACTGTCTTAACCTTATTACCATTGATCTTAGCTCAAATAGTCTTGTTGGTGAAATTCCTTCAACTATAGGAAACCTAAAAAATCTCCAAAACTTGATTTTAAACTCTAACCAATTGACAGGTTCAATACCAATTGAACTTGGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGACAATAACCTTAGTGGAAACCTTCCTATTGAACTAGGGAAACTTTCAAATCTTGAAGTTATAAGAGCTGGTGGGAACAAAGATATTGTAGGGAAGATTCCAGAAGAGTTAGGTGAATGCAAGAATTTGACTGTTTTAGGACTTGCTGACACTAAAATTTCAGGTTCATTACCTTATTCGTTAGGTAAGTTAAGTATGCTTCAGACAATATCTATTTATAGTACTTTAATTTCTGGTGAAATTCCTCATGAAATTGGTAACTGTTCTGAGCTAGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTGAGATTCCTTTTGAGATAGGTAAGCTTATGAAGCTTGAAAAGATTTTGCTATGGCAAAATAGTTTTGTTGGTAGGATACCTGAGGAAATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTTTCTTTGAATTATTTCTCTGGTGGAGTACCGAAAAGTTTAGGAAAATTATCGAATCTTGAAGAGCTTATGTTGAGTAACAATAATATTTCTGGTTCGATACCGGCTTCAATTTCGAATCTTACAAATTTGATACAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCAGTTGAGATTGGAAAGTTGACGAAGCTGACGGTTTTTTTCGCTTGGCAGAACAAACTTGAAGGTAGAATTCCATCAGAGTTAGGAGATTGTTTAAGCCTTGAGGCTTTGGATTTGTCTTATAATTCACTCAGTGATAGTTTACCTTCAGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTATTGATTTCTAATGATATCTCTGGCTCTATTCCTCATGAGATTGGCAACTGTAGTTCTCTGATTCGACTCCGGCTTTTAGATAACAGAATCAGTGGTGAGATACCAAGAGAAATAGGGTTTCTTAACAACCTTAATTTCCTTGATCTTTCAGAAAACCGTCTTAGTGGTTCGGTGCCGTTAGAGATTGGAAACTGTAAAGAACTTCAAATGCTGAATCTAAGTAACAACTCTCTTTCTGGTGATTTGCATAGTTACTTGTCTTCTCTGACAATGCTAGAGGTTTTGGATGTTTCAATGAATAATTTTTCTGGTGAGGTTCCTATGAGTATTGGTCAATTAACTTCGCTTCTTAGAGTTATTTTGAGCAAGAACTCGTTCTCTGGATCGATTCCTTCATCACTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGCAACATGTTATCAGGAAGCATACCACGAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTAAATTTGAGTCATAATGCATTATCTGGAGTAATCCCAGAAGAGATTTCGGCTCTTAACAAGTTGTCTGTTCTTGACCTTTCACATAACAATCTTGAAGGTGACTTGATGGTATTTTCAGGCCTTGAAAATCTTGTTTCTTTGAACATTTCATACAACAAATTCACTGGTTATTTACCAGATAGCAAGTTGTTTCATCAGCTAGCAGCAACAGATTTAGATGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTCATCGGAAATGCTGCAATGACAAGGATGTTAAATGGCTCTAATTCTAAGAGGTCAGAGATAATTAAAGTGGCCATTGGATTGCTCAGTTCTTTGACTGTTGTAATGGCAATCTTTGGAGTTGTTACGGTCTTTCGAGCGAGGAAACTCGTTCGAGACGACAATGATTCTGAGATGGGAGGAGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTAAACTTTTGTGTGGAGCAAATCCTAAAATGTTTGGTGGAATCCAATGTAATTGGAAAAGGGTGTTCGGGGATCGTTTATCGCGCGGAAATGGAAAATGGCGATGTCATTGCTGTCAAAAGGCTGTGGCCAACAACAACGGCAGCCACTGCCACTACTGGAAGATATGATCATAGTCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGCGATTCCTTTTCAGCCGAGGTAAAAACTCTCGGCTCAATTCGTCACAAGAACATTGTTAGGTTCTTGGGATGCTGTTGGAACAGAAACACAAGACTTCTTATGTATGATTACATGCCAAATGGAAGTCTTGGAAGCTTACTTCATGAAGGAAGTGGTAATTGCTTGGAGTGGAACATTAGATTCAAGATAATACTGGGAGCAGCTCAAGGTGTGGCTTATTTACACCATGATTGTGCTCCTCCTATTGTTCACAGAGATATTAAGGCCAACAACATCCTCATAGGTCTTGAATTTGAACCATACATAGCTGATTTTGGACTTGCAAAGCTTGTCGATGATGGAGATTTTGCACGATCTTCAAGTACGCTAGCTGGTTCTTATGGTTACATAGCTCCTGTTGATATTTTTTTAAATGTTCGTTTAACTCACGGTTACTTGTTTTTCTGCATGTTGAAACTTGAAGAGTATGGATACATGATGAAGATAACCGAGAAAAGCGATGTATACAGCTATGGTATTGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGTGGAGTTGAAGTGCTCGATGAAAGCTTAAGAGCAAGGCCAGAACCTGAAATTGAAGAAATGTTGCAGACTTTAGGTGTTGCTTTGTTATGCGTAACTCCAAGTCCAGATGATAGACCGACAATGAAAGACGTCGTTGCAATGATGAAAGAGATTAAACAGGAGAGAGATGAATGTGTGAAAGTTTTCGATGGATCTTCTACAAATGATCAACATGAAAGTAATCGTTCTAACGAAGAACAAGTTGAAGAGATGAAACATTCATGTCCAACAACAAGCAGCAGCAACACAAATATGAAAATGCATTACTCTCCTAATAGTTCTACAACACTAAAGTAA

Protein sequence

>Msa1060320

MSSQPFITNHHLLLLLFTLLPFSFASTNEVTILLSWTHTSTKLPSSFSNWNPLDSNPCKWSFITCSSQNFVTEINIQNVQLALPFPSNISSLSNLQKLAISGANLTGTIPHEIGNCLNLITIDLSSNSLVGEIPSTIGNLKNLQNLILNSNQLTGSIPIELGDCVNLKNLDIFDNNLSGNLPIELGKLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSLPYSLGKLSMLQTISIYSTLISGEIPHEIGNCSELVNLFLYENDLSGEIPFEIGKLMKLEKILLWQNSFVGRIPEEIGNCSSLKILDFSLNYFSGGVPKSLGKLSNLEELMLSNNNISGSIPASISNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFAWQNKLEGRIPSELGDCLSLEALDLSYNSLSDSLPSGLFKLQNLTKLLLISNDISGSIPHEIGNCSSLIRLRLLDNRISGEIPREIGFLNNLNFLDLSENRLSGSVPLEIGNCKELQMLNLSNNSLSGDLHSYLSSLTMLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGSIPSSLGKCSGIQLLDLSSNMLSGSIPRELFQIEALDIALNLSHNALSGVIPEEISALNKLSVLDLSHNNLEGDLMVFSGLENLVSLNISYNKFTGYLPDSKLFHQLAATDLDGNQGLCPNGHDSCFIGNAAMTRMLNGSNSKRSEIIKVAIGLLSSLTVVMAIFGVVTVFRARKLVRDDNDSEMGGGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTAATATTGRYDHSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEGSGNCLEWNIRFKIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPVDIFLNVRLTHGYLFFCMLKLEEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPEPEIEEMLQTLGVALLCVTPSPDDRPTMKDVVAMMKEIKQERDECVKVFDGSSTNDQHESNRSNEEQVEEMKHSCPTTSSSNTNMKMHYSPNSSTTLK*